Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314960 | sp|C6TCZ5|JAZ1_SOYBN | 70.638 | 235 | 66 | 2 | 1 | 235 | 1 | 232 | 1.57e-110 | 320 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314960 | I3T425 | 94.894 | 235 | 12 | 0 | 1 | 235 | 1 | 235 | 7.59e-162 | 456 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1314960 | TF | Tify |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203400 | Msa1314960 | 0.804197 | 2.424543e-49 | -8.615850e-47 |
| Msa1234910 | Msa1314960 | 0.902393 | 1.014670e-78 | -8.615850e-47 |
| Msa1276810 | Msa1314960 | 0.938341 | 7.900773e-99 | -8.615850e-47 |
| Msa1174800 | Msa1314960 | 0.898478 | 5.103291e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314960 | MtrunA17_Chr8g0344481 | 94.894 | 235 | 12 | 0 | 1 | 235 | 1 | 235 | 1.46e-165 | 456 |
| Msa1314960 | MtrunA17_Chr2g0301131 | 33.191 | 235 | 112 | 9 | 11 | 210 | 12 | 236 | 2.69e-21 | 89.4 |
| Msa1314960 | MtrunA17_Chr5g0399881 | 32.283 | 127 | 71 | 4 | 85 | 208 | 24 | 138 | 6.46e-13 | 64.7 |
| Msa1314960 | MtrunA17_Chr4g0070271 | 30.693 | 202 | 100 | 7 | 11 | 208 | 12 | 177 | 3.14e-12 | 63.5 |
| Msa1314960 | MtrunA17_Chr5g0399861 | 30.147 | 136 | 73 | 4 | 79 | 208 | 19 | 138 | 9.88e-12 | 61.6 |
| Msa1314960 | MtrunA17_Chr5g0399851 | 31.193 | 109 | 72 | 1 | 100 | 208 | 16 | 121 | 4.58e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314960 | AT1G72450.1 | 35.000 | 220 | 113 | 7 | 15 | 212 | 3 | 214 | 1.44e-23 | 95.9 |
| Msa1314960 | AT1G17380.1 | 33.641 | 217 | 109 | 8 | 17 | 212 | 11 | 213 | 5.73e-19 | 83.6 |
| Msa1314960 | AT1G19180.1 | 32.589 | 224 | 116 | 8 | 12 | 209 | 14 | 228 | 1.13e-17 | 79.7 |
| Msa1314960 | AT1G19180.3 | 32.589 | 224 | 116 | 8 | 12 | 209 | 14 | 228 | 1.13e-17 | 79.7 |
| Msa1314960 | AT1G72450.2 | 33.173 | 208 | 109 | 6 | 15 | 200 | 3 | 202 | 1.87e-17 | 78.2 |
| Msa1314960 | AT1G74950.1 | 29.200 | 250 | 143 | 10 | 1 | 223 | 1 | 243 | 2.30e-15 | 73.6 |
| Msa1314960 | AT1G17380.2 | 33.962 | 159 | 80 | 5 | 95 | 230 | 59 | 215 | 1.38e-13 | 68.6 |
| Msa1314960 | AT1G17380.3 | 31.707 | 205 | 108 | 7 | 16 | 202 | 10 | 200 | 3.51e-13 | 67.0 |
| Msa1314960 | AT1G19180.2 | 35.345 | 116 | 71 | 3 | 96 | 209 | 49 | 162 | 1.84e-12 | 64.3 |
Find 62 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCTGCTTTCTTTGGGAAAA+TGG | 0.109042 | 8_4:-14075899 | Msa1314960:CDS |
| TTGAAGGAAAAGAGAATTTC+TGG | 0.175716 | 8_4:-14075931 | Msa1314960:CDS |
| AAGGCCACAACAATCTTCTT+AGG | 0.212839 | 8_4:+14073710 | None:intergenic |
| GATTCTACACCTGCTTTCTT+TGG | 0.212849 | 8_4:-14075907 | Msa1314960:CDS |
| TTTAGTTCATCTTGAACTTT+AGG | 0.228550 | 8_4:-14073776 | Msa1314960:three_prime_UTR |
| TTAAGAAGTGAAGCTCTTCT+TGG | 0.236604 | 8_4:+14074043 | None:intergenic |
| CAATTGACGATATTCTATTC+TGG | 0.252458 | 8_4:-14074410 | Msa1314960:CDS |
| CTAAGCTTGTTCGTTGAATC+TGG | 0.272218 | 8_4:+14076170 | None:intergenic |
| GTGTTTGTTTGAGGAATTTC+GGG | 0.278263 | 8_4:+14074248 | None:intergenic |
| AACTAATTTACCTGAACATT+TGG | 0.278582 | 8_4:+14074193 | None:intergenic |
| TCCTTGTTCGGTTGTTTCTA+AGG | 0.284638 | 8_4:+14074223 | None:intergenic |
| GAACTTCTCCGGTGCCTTAC+CGG | 0.289709 | 8_4:+14075990 | None:intergenic |
| AGTGTTTGTTTGAGGAATTT+CGG | 0.311669 | 8_4:+14074247 | None:intergenic |
| AGAGGACCTTATCAAATTAA+TGG | 0.313978 | 8_4:-14073878 | Msa1314960:CDS |
| TGATCGGAAGAATTATCTTT+AGG | 0.316360 | 8_4:+14073821 | None:intergenic |
| ACTTTAGGTTATACATGTTT+TGG | 0.324420 | 8_4:-14073761 | Msa1314960:three_prime_UTR |
| TATTATGTTATCAATCAATT+AGG | 0.344670 | 8_4:-14073645 | Msa1314960:three_prime_UTR |
| TTTGGCTTGGTTTCCTTGTT+CGG | 0.349316 | 8_4:+14074211 | None:intergenic |
| ATTCTACACCTGCTTTCTTT+GGG | 0.379166 | 8_4:-14075906 | Msa1314960:CDS |
| AATCTTCTTAGGGCATAGTT+AGG | 0.380172 | 8_4:+14073721 | None:intergenic |
| GGAAACCAAGCCAAATGTTC+AGG | 0.389691 | 8_4:-14074203 | Msa1314960:intron |
| TCAATTAGGTCCAATGCTTT+CGG | 0.391973 | 8_4:-14073631 | Msa1314960:three_prime_UTR |
| TTGTGACCATTAATTTGATA+AGG | 0.394801 | 8_4:+14073872 | None:intergenic |
| CACTAGTGACCGGTGCACTT+GGG | 0.400373 | 8_4:+14074285 | None:intergenic |
| CTTGTTCGTTGAATCTGGTT+TGG | 0.405449 | 8_4:+14076175 | None:intergenic |
| AATTGACGATATTCTATTCT+GGG | 0.405626 | 8_4:-14074409 | Msa1314960:CDS |
| TCACTAGTGACCGGTGCACT+TGG | 0.422956 | 8_4:+14074284 | None:intergenic |
| TAAATCTATATGAAGATTGA+AGG | 0.439481 | 8_4:+14073691 | None:intergenic |
| AACTAAATCACTATAAGTTA+AGG | 0.443726 | 8_4:+14073792 | None:intergenic |
| GTGCCTTACCGGTGAGTCTC+CGG | 0.457733 | 8_4:+14076001 | None:intergenic |
| TGTGAAAATTTGAACTTCTC+CGG | 0.466884 | 8_4:+14075979 | None:intergenic |
| TCTAAGGCAGTGTTTGTTTG+AGG | 0.469946 | 8_4:+14074239 | None:intergenic |
| TTTGGGAAAATGGAACCTAA+AGG | 0.472484 | 8_4:-14075889 | Msa1314960:intron |
| ACTAGTGACCGGTGCACTTG+GGG | 0.487227 | 8_4:+14074286 | None:intergenic |
| TACGAATGCAACTGAGATCA+TGG | 0.488655 | 8_4:-14074357 | Msa1314960:CDS |
| GTATCAAACTTCTTAATGCA+AGG | 0.499300 | 8_4:+14075480 | None:intergenic |
| CTAATACTGTGTCGGATGGC+CGG | 0.499466 | 8_4:-14076020 | Msa1314960:CDS |
| AGGCCACAACAATCTTCTTA+GGG | 0.511789 | 8_4:+14073711 | None:intergenic |
| CCAACATGCAAAACTCAGAT+GGG | 0.513652 | 8_4:-14075557 | Msa1314960:CDS |
| ATTTACCTGAACATTTGGCT+TGG | 0.519424 | 8_4:+14074198 | None:intergenic |
| TGAATCTCTTCCTCAGCTTG+TGG | 0.531942 | 8_4:-14075508 | Msa1314960:CDS |
| GCATTAAGAAGTTTGATACA+AGG | 0.535356 | 8_4:-14075476 | Msa1314960:intron |
| GCCAACATGCAAAACTCAGA+TGG | 0.537855 | 8_4:-14075558 | Msa1314960:CDS |
| TCGGATGGCCGGAGACTCAC+CGG | 0.544946 | 8_4:-14076009 | Msa1314960:CDS |
| CTAGTGACCGGTGCACTTGG+GGG | 0.549856 | 8_4:+14074287 | None:intergenic |
| TGCAACTGAGATCATGGAGT+TGG | 0.557096 | 8_4:-14074351 | Msa1314960:CDS |
| TAAGTTAAGGTCGAATTGAT+CGG | 0.557387 | 8_4:+14073805 | None:intergenic |
| GAAGAAAGAAACTATGAACT+AGG | 0.564784 | 8_4:+14076127 | None:intergenic |
| GAGACTCACCGGTAAGGCAC+CGG | 0.568974 | 8_4:-14075998 | Msa1314960:CDS |
| TTCTTGAGAAAAGAAAAGAA+AGG | 0.582036 | 8_4:-14074018 | Msa1314960:intron |
| GAATAGAATATCGTCAATTG+TGG | 0.583205 | 8_4:+14074413 | None:intergenic |
| GCCTTAGAAACAACCGAACA+AGG | 0.584084 | 8_4:-14074224 | Msa1314960:CDS |
| AAATTTAGCTAATACTGTGT+CGG | 0.588601 | 8_4:-14076028 | Msa1314960:CDS |
| ATGATCTCAGTTGCATTCGT+AGG | 0.602248 | 8_4:+14074359 | None:intergenic |
| TGTTGCAGGGTCATTGCTAG+AGG | 0.603165 | 8_4:-14073896 | Msa1314960:intron |
| TTAGCTAATACTGTGTCGGA+TGG | 0.619524 | 8_4:-14076024 | Msa1314960:CDS |
| CAACATGCAAAACTCAGATG+GGG | 0.638179 | 8_4:-14075556 | Msa1314960:CDS |
| ATGCCCTAAGAAGATTGTTG+TGG | 0.644601 | 8_4:-14073714 | Msa1314960:three_prime_UTR |
| TTATGTAGATAAAGACCACA+TGG | 0.687381 | 8_4:-14076212 | Msa1314960:five_prime_UTR |
| AACATGCAAAACTCAGATGG+GGG | 0.692839 | 8_4:-14075555 | Msa1314960:CDS |
| GTCTGAACTATGAGACCATG+TGG | 0.700545 | 8_4:+14076197 | None:intergenic |
| TTAGCCTCTGAAAATCCAAG+CGG | 0.722831 | 8_4:-14074320 | Msa1314960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATAATAAAATTAAATA+AGG | + | chr8_4:14074063-14074082 | None:intergenic | 0.0% |
| !!! | ATTATTATTTTGTTACAAAA+TGG | - | chr8_4:14074074-14074093 | Msa1314960:intron | 10.0% |
| !!! | TTAATGTTTTATTTCTTACT+TGG | - | chr8_4:14073966-14073985 | Msa1314960:intron | 15.0% |
| !!! | TTTAGTATTGGAAAATTATT+GGG | - | chr8_4:14074106-14074125 | Msa1314960:intron | 15.0% |
| !!! | ATATTGGTTAGAATAATAAT+TGG | - | chr8_4:14074957-14074976 | Msa1314960:intron | 15.0% |
| !!! | TGTAAATTAATTTTATTGTG+AGG | + | chr8_4:14075213-14075232 | None:intergenic | 15.0% |
| !!! | TTTAGAGTATCATTTTATTT+TGG | + | chr8_4:14075237-14075256 | None:intergenic | 15.0% |
| !! | AAATATATATTGTAAGAGTT+TGG | - | chr8_4:14075313-14075332 | Msa1314960:intron | 15.0% |
| !! | TATTATGTTATCAATCAATT+AGG | - | chr8_4:14076162-14076181 | Msa1314960:five_prime_UTR | 15.0% |
| !!! | GTGATATTAGTATTGTTTTT+TGG | + | chr8_4:14073519-14073538 | None:intergenic | 20.0% |
| !!! | GTAAAGTTAAGATTTTTTGT+TGG | - | chr8_4:14073735-14073754 | Msa1314960:three_prime_UTR | 20.0% |
| !!! | GTTTAGTATTGGAAAATTAT+TGG | - | chr8_4:14074105-14074124 | Msa1314960:intron | 20.0% |
| !!! | ATTTACATGGAAAAACATTT+TGG | + | chr8_4:14074465-14074484 | None:intergenic | 20.0% |
| !!! | AATGTTTTTCCATGTAAATT+AGG | - | chr8_4:14074466-14074485 | Msa1314960:intron | 20.0% |
| !! | TAGATCTATTTATAACAAAG+TGG | - | chr8_4:14074575-14074594 | Msa1314960:intron | 20.0% |
| !!! | TAAATAAGTGTAGATTTGTT+TGG | - | chr8_4:14074886-14074905 | Msa1314960:intron | 20.0% |
| !! | AAGGAAATAAAATAAACAGA+CGG | + | chr8_4:14075841-14075860 | None:intergenic | 20.0% |
| !! | AACTAAATCACTATAAGTTA+AGG | + | chr8_4:14076018-14076037 | None:intergenic | 20.0% |
| !! | TAAATCTATATGAAGATTGA+AGG | + | chr8_4:14076119-14076138 | None:intergenic | 20.0% |
| !! | AATCACATGTATTCAAAAAA+TGG | + | chr8_4:14076306-14076325 | None:intergenic | 20.0% |
| !!! | TTTTTTGAATACATGTGATT+TGG | - | chr8_4:14076306-14076325 | Msa1314960:five_prime_UTR | 20.0% |
| !!! | AAGTTAAGATTTTTTGTTGG+TGG | - | chr8_4:14073738-14073757 | Msa1314960:three_prime_UTR | 25.0% |
| !!! | AGTTAAGATTTTTTGTTGGT+GGG | - | chr8_4:14073739-14073758 | Msa1314960:three_prime_UTR | 25.0% |
| ! | AAATTTAGCTAATACTGTGT+CGG | - | chr8_4:14073779-14073798 | Msa1314960:three_prime_UTR | 25.0% |
| ! | AAGAGAAAGATTATACCTTT+AGG | + | chr8_4:14073936-14073955 | None:intergenic | 25.0% |
| !! | ATAATCTTTCTCTTGTTTCA+TGG | - | chr8_4:14073942-14073961 | Msa1314960:intron | 25.0% |
| ! | AACCAAACAATTAATTGACA+AGG | + | chr8_4:14074027-14074046 | None:intergenic | 25.0% |
| ! | TTGTTACAAAATGGATGATT+TGG | - | chr8_4:14074083-14074102 | Msa1314960:intron | 25.0% |
| !! | ATGTAAATTAGGTTAGTCAT+GGG | - | chr8_4:14074477-14074496 | Msa1314960:intron | 25.0% |
| !!! | GATACAATTCAGTTTTGAAA+AGG | - | chr8_4:14074512-14074531 | Msa1314960:intron | 25.0% |
| ! | ATCTTGATTAAAACAATCGT+CGG | - | chr8_4:14074656-14074675 | Msa1314960:intron | 25.0% |
| !!! | AATCTTTCATTTTGATCTTG+TGG | + | chr8_4:14075045-14075064 | None:intergenic | 25.0% |
| !! | AGATTTGTTTGATTGAAAAG+AGG | - | chr8_4:14075060-14075079 | Msa1314960:intron | 25.0% |
| !! | AGGTTGAAGTATTAATGATA+TGG | + | chr8_4:14075113-14075132 | None:intergenic | 25.0% |
| !! | TACATGTTAGTGATCAATTT+TGG | + | chr8_4:14075142-14075161 | None:intergenic | 25.0% |
| ! | ATAAACAACAATAAGAACAC+TGG | + | chr8_4:14075344-14075363 | None:intergenic | 25.0% |
| ! | AATTGACGATATTCTATTCT+GGG | - | chr8_4:14075398-14075417 | Msa1314960:intron | 25.0% |
| !!! | TTTAATTTTTCACTAGTGAC+CGG | + | chr8_4:14075535-14075554 | None:intergenic | 25.0% |
| ! | AACTAATTTACCTGAACATT+TGG | + | chr8_4:14075617-14075636 | None:intergenic | 25.0% |
| ! | TTCTTGAGAAAAGAAAAGAA+AGG | - | chr8_4:14075789-14075808 | Msa1314960:intron | 25.0% |
| !! | CGGAAATAGAAATTTTTAAC+TGG | + | chr8_4:14075821-14075840 | None:intergenic | 25.0% |
| ! | CAAAAATAGACAACATACAA+AGG | + | chr8_4:14075860-14075879 | None:intergenic | 25.0% |
| !!! | TGTATGTTGTCTATTTTTGT+TGG | - | chr8_4:14075861-14075880 | Msa1314960:intron | 25.0% |
| ! | CAAGATTCAATTAATTAGCA+TGG | + | chr8_4:14075888-14075907 | None:intergenic | 25.0% |
| !! | TTGTGACCATTAATTTGATA+AGG | + | chr8_4:14075938-14075957 | None:intergenic | 25.0% |
| ! | AATTAATGGTCACAAAAATG+AGG | - | chr8_4:14075943-14075962 | Msa1314960:CDS | 25.0% |
| ! | ATTAATGGTCACAAAAATGA+GGG | - | chr8_4:14075944-14075963 | Msa1314960:CDS | 25.0% |
| !! | TTTAGTTCATCTTGAACTTT+AGG | - | chr8_4:14076031-14076050 | Msa1314960:CDS | 25.0% |
| !!! | ACTTTAGGTTATACATGTTT+TGG | - | chr8_4:14076046-14076065 | Msa1314960:exon | 25.0% |
| TTATGTAGATAAAGACCACA+TGG | - | chr8_4:14073595-14073614 | Msa1314960:three_prime_UTR | 30.0% | |
| GAAGAAAGAAACTATGAACT+AGG | + | chr8_4:14073683-14073702 | None:intergenic | 30.0% | |
| !!! | GTTAAGATTTTTTGTTGGTG+GGG | - | chr8_4:14073740-14073759 | Msa1314960:three_prime_UTR | 30.0% |
| TGTGAAAATTTGAACTTCTC+CGG | + | chr8_4:14073831-14073850 | None:intergenic | 30.0% | |
| TTGAAGGAAAAGAGAATTTC+TGG | - | chr8_4:14073876-14073895 | Msa1314960:CDS | 30.0% | |
| TGCCTTGTCAATTAATTGTT+TGG | - | chr8_4:14074022-14074041 | Msa1314960:CDS | 30.0% | |
| !! | TGGATGATTTGGTTTAGTAT+TGG | - | chr8_4:14074094-14074113 | Msa1314960:intron | 30.0% |
| !!! | AGTTTGCTGATTGTGTTTTT+TGG | - | chr8_4:14074190-14074209 | Msa1314960:intron | 30.0% |
| !! | GATTTTTCTAGCAAGTACAA+AGG | - | chr8_4:14074218-14074237 | Msa1314960:CDS | 30.0% |
| GTATCAAACTTCTTAATGCA+AGG | + | chr8_4:14074330-14074349 | None:intergenic | 30.0% | |
| GCATTAAGAAGTTTGATACA+AGG | - | chr8_4:14074331-14074350 | Msa1314960:CDS | 30.0% | |
| !! | TGGAAAAACATTTTGGTAGT+AGG | + | chr8_4:14074458-14074477 | None:intergenic | 30.0% |
| CATGACTAACCTAATTTACA+TGG | + | chr8_4:14074478-14074497 | None:intergenic | 30.0% | |
| ! | CATGTAAATTAGGTTAGTCA+TGG | - | chr8_4:14074476-14074495 | Msa1314960:intron | 30.0% |
| ! | AACAGATCTAGACTTCTTTT+TGG | + | chr8_4:14074724-14074743 | None:intergenic | 30.0% |
| TTAGCAAAAGTCGAATTGTT+TGG | - | chr8_4:14074757-14074776 | Msa1314960:intron | 30.0% | |
| TAGCAAAAGTCGAATTGTTT+GGG | - | chr8_4:14074758-14074777 | Msa1314960:intron | 30.0% | |
| !! | GTTTTGATCTTCTAGTCTAA+GGG | + | chr8_4:14074864-14074883 | None:intergenic | 30.0% |
| !!! | GTTAGTGATCAATTTTGGTT+GGG | + | chr8_4:14075137-14075156 | None:intergenic | 30.0% |
| !! | TGTTAGTGATCAATTTTGGT+TGG | + | chr8_4:14075138-14075157 | None:intergenic | 30.0% |
| CTAACATGTATGTACGAAAA+AGG | - | chr8_4:14075152-14075171 | Msa1314960:intron | 30.0% | |
| ! | AGGTATTGTTGTGTTAAGTT+TGG | - | chr8_4:14075172-14075191 | Msa1314960:intron | 30.0% |
| GAATAGAATATCGTCAATTG+TGG | + | chr8_4:14075397-14075416 | None:intergenic | 30.0% | |
| CAATTGACGATATTCTATTC+TGG | - | chr8_4:14075397-14075416 | Msa1314960:intron | 30.0% | |
| GGTCACTAGTGAAAAATTAA+AGG | - | chr8_4:14075534-14075553 | Msa1314960:CDS | 30.0% | |
| AGTGTTTGTTTGAGGAATTT+CGG | + | chr8_4:14075563-14075582 | None:intergenic | 30.0% | |
| TTGCATGCTTTGTAATGTTT+CGG | + | chr8_4:14075688-14075707 | None:intergenic | 30.0% | |
| GAGAAAAGAAAAGAAAGGTA+TGG | - | chr8_4:14075794-14075813 | Msa1314960:intron | 30.0% | |
| ATTGAATCTTGAATTGTTGC+AGG | - | chr8_4:14075897-14075916 | Msa1314960:CDS | 30.0% | |
| TTGAATCTTGAATTGTTGCA+GGG | - | chr8_4:14075898-14075917 | Msa1314960:CDS | 30.0% | |
| AGAGGACCTTATCAAATTAA+TGG | - | chr8_4:14075929-14075948 | Msa1314960:CDS | 30.0% | |
| TGATCGGAAGAATTATCTTT+AGG | + | chr8_4:14075989-14076008 | None:intergenic | 30.0% | |
| TAAGTTAAGGTCGAATTGAT+CGG | + | chr8_4:14076005-14076024 | None:intergenic | 30.0% | |
| !! | ATCAGTTTTATCACTGAGAT+TGG | - | chr8_4:14076215-14076234 | Msa1314960:five_prime_UTR | 30.0% |
| !! | TCTTTTGAGTCAGTTCTTGA+AGG | - | chr8_4:14073860-14073879 | Msa1314960:CDS | 35.0% |
| ATTCTACACCTGCTTTCTTT+GGG | - | chr8_4:14073901-14073920 | Msa1314960:intron | 35.0% | |
| TTTGGGAAAATGGAACCTAA+AGG | - | chr8_4:14073918-14073937 | Msa1314960:intron | 35.0% | |
| !!! | CTGATTGTGTTTTTTGGTTG+TGG | - | chr8_4:14074196-14074215 | Msa1314960:intron | 35.0% |
| TCTAGACATCTAATGACAAG+TGG | + | chr8_4:14074559-14074578 | None:intergenic | 35.0% | |
| TTATAACAAAGTGGCGCAAT+TGG | - | chr8_4:14074584-14074603 | Msa1314960:intron | 35.0% | |
| ! | TAGCTTAGGTCGAAATGTTT+TGG | - | chr8_4:14074618-14074637 | Msa1314960:intron | 35.0% |
| TAAAATCGTGAATCAGTGAG+AGG | - | chr8_4:14074691-14074710 | Msa1314960:intron | 35.0% | |
| CTTCTAGTCTAAGGGAAATT+GGG | + | chr8_4:14074856-14074875 | None:intergenic | 35.0% | |
| TCTTCTAGTCTAAGGGAAAT+TGG | + | chr8_4:14074857-14074876 | None:intergenic | 35.0% | |
| !! | CGTTTTGATCTTCTAGTCTA+AGG | + | chr8_4:14074865-14074884 | None:intergenic | 35.0% |
| TTAGCTAAGGCCTAATTGTT+CGG | - | chr8_4:14074918-14074937 | Msa1314960:intron | 35.0% | |
| GTAGTACTCGAGTTCAATAT+TGG | - | chr8_4:14074941-14074960 | Msa1314960:intron | 35.0% | |
| TTTATTGTGAGGTTGAGATC+TGG | + | chr8_4:14075202-14075221 | None:intergenic | 35.0% | |
| CTAAACTCGTTGAACATCAA+TGG | - | chr8_4:14075252-14075271 | Msa1314960:intron | 35.0% | |
| ! | ATCGTCAATTGTGGAGTTTT+AGG | + | chr8_4:14075388-14075407 | None:intergenic | 35.0% |
| ! | ATTTTCAGAGGCTAATTTGG+TGG | + | chr8_4:14075482-14075501 | None:intergenic | 35.0% |
| ! | TGGATTTTCAGAGGCTAATT+TGG | + | chr8_4:14075485-14075504 | None:intergenic | 35.0% |
| GTGTTTGTTTGAGGAATTTC+GGG | + | chr8_4:14075562-14075581 | None:intergenic | 35.0% | |
| ATTTACCTGAACATTTGGCT+TGG | + | chr8_4:14075612-14075631 | None:intergenic | 35.0% | |
| TTAAGAAGTGAAGCTCTTCT+TGG | + | chr8_4:14075767-14075786 | None:intergenic | 35.0% | |
| AAAAATGAGGGTAGTAGTTC+TGG | - | chr8_4:14075956-14075975 | Msa1314960:CDS | 35.0% | |
| AATCTTCTTAGGGCATAGTT+AGG | + | chr8_4:14076089-14076108 | None:intergenic | 35.0% | |
| TCAATTAGGTCCAATGCTTT+CGG | - | chr8_4:14076176-14076195 | Msa1314960:five_prime_UTR | 35.0% | |
| !!! | TTGTTTTGATCCGAAAGCAT+TGG | + | chr8_4:14076189-14076208 | None:intergenic | 35.0% |
| CTTGTTCGTTGAATCTGGTT+TGG | + | chr8_4:14073635-14073654 | None:intergenic | 40.0% | |
| ! | CTAAGCTTGTTCGTTGAATC+TGG | + | chr8_4:14073640-14073659 | None:intergenic | 40.0% |
| TTAGCTAATACTGTGTCGGA+TGG | - | chr8_4:14073783-14073802 | Msa1314960:exon | 40.0% | |
| GATTCTACACCTGCTTTCTT+TGG | - | chr8_4:14073900-14073919 | Msa1314960:intron | 40.0% | |
| ! | ACCTGCTTTCTTTGGGAAAA+TGG | - | chr8_4:14073908-14073927 | Msa1314960:intron | 40.0% |
| ! | TCCATTTTCCCAAAGAAAGC+AGG | + | chr8_4:14073912-14073931 | None:intergenic | 40.0% |
| CACAATCAGCAAACTTTCAC+AGG | + | chr8_4:14074185-14074204 | None:intergenic | 40.0% | |
| CCAACATGCAAAACTCAGAT+GGG | - | chr8_4:14074250-14074269 | Msa1314960:CDS | 40.0% | |
| CAACATGCAAAACTCAGATG+GGG | - | chr8_4:14074251-14074270 | Msa1314960:CDS | 40.0% | |
| AACATGCAAAACTCAGATGG+GGG | - | chr8_4:14074252-14074271 | Msa1314960:CDS | 40.0% | |
| ! | AAATTAGGTTAGTCATGGGC+TGG | - | chr8_4:14074481-14074500 | Msa1314960:intron | 40.0% |
| AGACATCTAATGACAAGTGG+TGG | + | chr8_4:14074556-14074575 | None:intergenic | 40.0% | |
| GTAGTACTTGAGTTCGATCT+TGG | - | chr8_4:14074780-14074799 | Msa1314960:intron | 40.0% | |
| TACTTGAGTTCGATCTTGGT+TGG | - | chr8_4:14074784-14074803 | Msa1314960:intron | 40.0% | |
| AGTCTAAGGGAAATTGGGTT+CGG | + | chr8_4:14074851-14074870 | None:intergenic | 40.0% | |
| GAACAATTAGGCCTTAGCTA+AGG | + | chr8_4:14074919-14074938 | None:intergenic | 40.0% | |
| TAGCTAAGGCCTAATTGTTC+GGG | - | chr8_4:14074919-14074938 | Msa1314960:intron | 40.0% | |
| !!! | GTGATCAATTTTGGTTGGGA+AGG | + | chr8_4:14075133-14075152 | None:intergenic | 40.0% |
| ACTCGTTGAACATCAATGGT+AGG | - | chr8_4:14075256-14075275 | Msa1314960:intron | 40.0% | |
| ATGATCTCAGTTGCATTCGT+AGG | + | chr8_4:14075451-14075470 | None:intergenic | 40.0% | |
| TACGAATGCAACTGAGATCA+TGG | - | chr8_4:14075450-14075469 | Msa1314960:intron | 40.0% | |
| ! | TTAGCCTCTGAAAATCCAAG+CGG | - | chr8_4:14075487-14075506 | Msa1314960:CDS | 40.0% |
| ! | TCTAAGGCAGTGTTTGTTTG+AGG | + | chr8_4:14075571-14075590 | None:intergenic | 40.0% |
| !! | TCCTTGTTCGGTTGTTTCTA+AGG | + | chr8_4:14075587-14075606 | None:intergenic | 40.0% |
| !! | TTTGGCTTGGTTTCCTTGTT+CGG | + | chr8_4:14075599-14075618 | None:intergenic | 40.0% |
| ATGCCCTAAGAAGATTGTTG+TGG | - | chr8_4:14076093-14076112 | Msa1314960:five_prime_UTR | 40.0% | |
| AGGCCACAACAATCTTCTTA+GGG | + | chr8_4:14076099-14076118 | None:intergenic | 40.0% | |
| AAGGCCACAACAATCTTCTT+AGG | + | chr8_4:14076100-14076119 | None:intergenic | 40.0% | |
| GTCTGAACTATGAGACCATG+TGG | + | chr8_4:14073613-14073632 | None:intergenic | 45.0% | |
| GCCAACATGCAAAACTCAGA+TGG | - | chr8_4:14074249-14074268 | Msa1314960:CDS | 45.0% | |
| ! | CCCATCTGAGTTTTGCATGT+TGG | + | chr8_4:14074253-14074272 | None:intergenic | 45.0% |
| TGAATCTCTTCCTCAGCTTG+TGG | - | chr8_4:14074299-14074318 | Msa1314960:CDS | 45.0% | |
| ! | CAAGGATTTTCCACAAGCTG+AGG | + | chr8_4:14074312-14074331 | None:intergenic | 45.0% |
| ! | TGGTTAATGCGCGTTAGCTT+AGG | - | chr8_4:14074604-14074623 | Msa1314960:intron | 45.0% |
| !! | TTGGTTCTACGCCTTAGCTA+AGG | - | chr8_4:14074905-14074924 | Msa1314960:intron | 45.0% |
| CGAGTACTACCCGAACAATT+AGG | + | chr8_4:14074931-14074950 | None:intergenic | 45.0% | |
| GTCGAGACTGAATTTCACTG+TGG | - | chr8_4:14075018-14075037 | Msa1314960:intron | 45.0% | |
| TGCAACTGAGATCATGGAGT+TGG | - | chr8_4:14075456-14075475 | Msa1314960:intron | 45.0% | |
| ! | TTCACCGCTTGGATTTTCAG+AGG | + | chr8_4:14075494-14075513 | None:intergenic | 45.0% |
| GCCTTAGAAACAACCGAACA+AGG | - | chr8_4:14075583-14075602 | Msa1314960:intron | 45.0% | |
| GGAAACCAAGCCAAATGTTC+AGG | - | chr8_4:14075604-14075623 | Msa1314960:intron | 45.0% | |
| !!! | TATGAAATTTTAATTTTTTT+TGG | - | chr8_4:14073991-14074010 | Msa1314960:intron | 5.0% |
| CTAATACTGTGTCGGATGGC+CGG | - | chr8_4:14073787-14073806 | Msa1314960:exon | 50.0% | |
| TGTTGCAGGGTCATTGCTAG+AGG | - | chr8_4:14075911-14075930 | Msa1314960:CDS | 50.0% | |
| GAACTTCTCCGGTGCCTTAC+CGG | + | chr8_4:14073820-14073839 | None:intergenic | 55.0% | |
| AGAAAACCCCCCAAGTGCAC+CGG | - | chr8_4:14075513-14075532 | Msa1314960:CDS | 55.0% | |
| ACTAGTGACCGGTGCACTTG+GGG | + | chr8_4:14075524-14075543 | None:intergenic | 55.0% | |
| CACTAGTGACCGGTGCACTT+GGG | + | chr8_4:14075525-14075544 | None:intergenic | 55.0% | |
| TCACTAGTGACCGGTGCACT+TGG | + | chr8_4:14075526-14075545 | None:intergenic | 55.0% | |
| GTGCCTTACCGGTGAGTCTC+CGG | + | chr8_4:14073809-14073828 | None:intergenic | 60.0% | |
| GAGACTCACCGGTAAGGCAC+CGG | - | chr8_4:14073809-14073828 | Msa1314960:CDS | 60.0% | |
| ! | GGGGGGTTTTCTTCACCGCT+TGG | + | chr8_4:14075505-14075524 | None:intergenic | 60.0% |
| TAGTGACCGGTGCACTTGGG+GGG | + | chr8_4:14075522-14075541 | None:intergenic | 60.0% | |
| CTAGTGACCGGTGCACTTGG+GGG | + | chr8_4:14075523-14075542 | None:intergenic | 60.0% | |
| TCGGATGGCCGGAGACTCAC+CGG | - | chr8_4:14073798-14073817 | Msa1314960:exon | 65.0% | |
| TGGCCGGAGACTCACCGGTA+AGG | - | chr8_4:14073803-14073822 | Msa1314960:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 14073499 | 14076330 | 14073499 | ID=Msa1314960;Name=Msa1314960 |
| chr8_4 | mRNA | 14073499 | 14076330 | 14073499 | ID=Msa1314960-mRNA-1;Parent=Msa1314960;Name=Msa1314960-mRNA-1;_AED=0.08;_eAED=0.08;_QI=275|1|1|1|1|1|5|303|235 |
| chr8_4 | exon | 14073499 | 14073910 | 14073499 | ID=Msa1314960-mRNA-1:exon:5271;Parent=Msa1314960-mRNA-1 |
| chr8_4 | exon | 14074019 | 14074076 | 14074019 | ID=Msa1314960-mRNA-1:exon:5270;Parent=Msa1314960-mRNA-1 |
| chr8_4 | exon | 14074204 | 14074454 | 14074204 | ID=Msa1314960-mRNA-1:exon:5269;Parent=Msa1314960-mRNA-1 |
| chr8_4 | exon | 14075477 | 14075600 | 14075477 | ID=Msa1314960-mRNA-1:exon:5268;Parent=Msa1314960-mRNA-1 |
| chr8_4 | exon | 14075890 | 14076330 | 14075890 | ID=Msa1314960-mRNA-1:exon:5267;Parent=Msa1314960-mRNA-1 |
| chr8_4 | five_prime_UTR | 14076056 | 14076330 | 14076056 | ID=Msa1314960-mRNA-1:five_prime_utr;Parent=Msa1314960-mRNA-1 |
| chr8_4 | CDS | 14075890 | 14076055 | 14075890 | ID=Msa1314960-mRNA-1:cds;Parent=Msa1314960-mRNA-1 |
| chr8_4 | CDS | 14075477 | 14075600 | 14075477 | ID=Msa1314960-mRNA-1:cds;Parent=Msa1314960-mRNA-1 |
| chr8_4 | CDS | 14074204 | 14074454 | 14074204 | ID=Msa1314960-mRNA-1:cds;Parent=Msa1314960-mRNA-1 |
| chr8_4 | CDS | 14074019 | 14074076 | 14074019 | ID=Msa1314960-mRNA-1:cds;Parent=Msa1314960-mRNA-1 |
| chr8_4 | CDS | 14073802 | 14073910 | 14073802 | ID=Msa1314960-mRNA-1:cds;Parent=Msa1314960-mRNA-1 |
| chr8_4 | three_prime_UTR | 14073499 | 14073801 | 14073499 | ID=Msa1314960-mRNA-1:three_prime_utr;Parent=Msa1314960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
