AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177500

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177500 MtrunA17_Chr8g0348081 95.429 175 8 0 1 175 1 175 6.85e-123 351
Msa1177500 MtrunA17_Chr8g0336851 84.571 175 27 0 1 175 1 175 1.82e-108 314
Msa1177500 MtrunA17_Chr8g0336761 83.429 175 29 0 1 175 1 175 8.65e-108 313
Msa1177500 MtrunA17_Chr8g0336631 79.459 185 37 1 1 184 1 185 1.27e-107 312
Msa1177500 MtrunA17_Chr8g0336781 84.091 176 27 1 1 175 36 211 2.54e-106 310
Msa1177500 MtrunA17_Chr8g0336791 82.955 176 29 1 1 175 1 176 9.76e-106 301
Msa1177500 MtrunA17_Chr8g0336831 82.386 176 30 1 1 175 1 176 6.55e-104 299
Msa1177500 MtrunA17_Chr8g0336861 77.838 185 40 1 1 184 1 185 1.99e-100 294
Msa1177500 MtrunA17_Chr4g0066121 76.136 176 41 1 1 175 1 176 1.20e-96 284
Msa1177500 MtrunA17_Chr2g0311761 70.732 164 44 2 15 175 20 182 1.42e-79 241
Msa1177500 MtrunA17_Chr2g0311831 67.073 164 50 2 15 175 20 182 2.58e-76 233
Msa1177500 MtrunA17_Chr2g0311921 64.634 164 54 2 15 175 6 168 5.24e-74 226
Msa1177500 MtrunA17_Chr8g0336751 59.509 163 62 3 16 175 47 208 3.18e-64 202
Msa1177500 MtrunA17_Chr1g0167951 58.228 158 63 3 19 175 11 166 6.06e-62 195
Msa1177500 MtrunA17_Chr2g0311861 57.143 175 51 3 15 186 16 169 6.21e-62 195
Msa1177500 MtrunA17_Chr1g0167911 55.215 163 69 3 15 175 7 167 1.46e-60 192
Msa1177500 MtrunA17_Chr1g0168001 53.571 168 68 4 15 174 7 172 3.02e-59 182
Msa1177500 MtrunA17_Chr1g0167961 53.143 175 77 4 15 186 22 194 1.27e-58 187
Msa1177500 MtrunA17_Chr8g0354241 48.851 174 81 3 17 184 22 193 4.09e-52 171
Msa1177500 MtrunA17_Chr8g0354261 47.701 174 83 3 17 184 22 193 4.80e-51 168
Msa1177500 MtrunA17_Chr1g0187821 44.571 175 86 4 17 181 18 191 3.17e-50 166
Msa1177500 MtrunA17_Chr1g0187811 46.739 184 78 5 15 181 132 312 1.99e-49 166
Msa1177500 MtrunA17_Chr1g0187831 45.000 180 82 5 17 182 19 195 1.14e-47 159
Msa1177500 MtrunA17_Chr8g0335411 44.785 163 83 3 17 175 22 181 2.23e-47 158
Msa1177500 MtrunA17_Chr7g0235951 44.633 177 83 4 16 182 21 192 2.28e-47 158
Msa1177500 MtrunA17_Chr7g0247991 44.785 163 83 3 17 175 22 181 2.55e-46 155
Msa1177500 MtrunA17_Chr8g0364161 42.515 167 83 3 16 175 21 181 1.70e-45 148
Msa1177500 MtrunA17_Chr8g0364471 43.478 161 88 3 17 175 22 181 3.81e-45 152
Msa1177500 MtrunA17_Chr4g0011311 42.857 161 89 3 17 175 22 181 2.97e-44 149
Msa1177500 MtrunA17_Chr4g0055591 43.902 164 76 3 19 175 16 170 2.45e-43 147
Msa1177500 MtrunA17_Chr2g0311711 43.293 164 88 3 16 175 19 181 7.17e-43 147
Msa1177500 MtrunA17_Chr6g0472861 42.391 184 90 3 15 186 15 194 2.15e-42 145
Msa1177500 MtrunA17_Chr2g0311701 41.463 164 91 2 16 175 21 183 2.70e-42 145
Msa1177500 MtrunA17_Chr7g0225881 42.262 168 86 2 15 175 15 178 3.91e-41 142
Msa1177500 MtrunA17_Chr7g0236011 40.805 174 92 4 17 182 22 192 4.30e-41 142
Msa1177500 MtrunA17_Chr2g0311681 42.073 164 90 3 16 175 15 177 8.79e-41 141
Msa1177500 MtrunA17_Chr2g0311691 42.683 164 89 3 16 175 15 177 5.26e-40 139
Msa1177500 MtrunA17_Chr7g0266651 39.375 160 92 2 19 175 15 172 2.50e-37 132
Msa1177500 MtrunA17_Chr4g0066991 39.877 163 71 4 17 175 22 161 4.49e-36 128
Msa1177500 MtrunA17_Chr8g0362741 41.667 156 74 4 17 170 22 162 1.89e-35 125
Msa1177500 MtrunA17_Chr1g0184241 38.690 168 103 0 17 184 23 190 6.25e-35 125
Msa1177500 MtrunA17_Chr2g0311741 47.107 121 63 1 55 175 22 141 1.53e-33 121
Msa1177500 MtrunA17_Chr1g0167931 39.080 174 64 3 15 186 7 140 6.63e-33 119
Msa1177500 MtrunA17_Chr2g0311751 44.262 122 67 1 55 176 22 142 8.59e-33 115
Msa1177500 MtrunA17_Chr1g0161081 36.646 161 94 2 19 175 28 184 2.19e-31 116
Msa1177500 MtrunA17_Chr1g0161041 36.207 174 102 3 6 175 39 207 3.53e-31 116
Msa1177500 MtrunA17_Chr1g0161111 36.025 161 95 2 19 175 87 243 2.64e-30 114
Msa1177500 MtrunA17_Chr7g0235991 38.406 138 78 3 42 175 1 135 2.61e-28 104
Msa1177500 MtrunA17_Chr7g0235981 33.962 159 72 4 17 174 8 134 1.70e-22 92.4
Msa1177500 MtrunA17_Chr7g0242551 30.968 155 99 3 14 161 1 154 7.95e-20 85.5
Msa1177500 MtrunA17_Chr2g0311641 32.450 151 95 4 27 174 21 167 7.58e-18 76.6
Msa1177500 MtrunA17_Chr8g0375571 36.290 124 74 3 56 175 41 163 1.13e-17 79.3
Msa1177500 MtrunA17_Chr5g0426891 28.313 166 113 4 27 186 3 168 1.34e-17 79.0
Msa1177500 MtrunA17_Chr2g0311621 40.816 98 54 2 27 123 21 115 1.37e-17 74.7
Msa1177500 MtrunA17_Chr2g0311631 32.237 152 96 4 27 175 21 168 1.54e-16 76.3
Msa1177500 MtrunA17_Chr3g0126741 31.073 177 102 5 10 179 19 182 1.30e-15 73.6
Msa1177500 MtrunA17_Chr8g0375591 40.845 71 42 0 60 130 46 116 2.34e-15 69.3
Msa1177500 MtrunA17_Chr3g0113641 26.627 169 116 3 14 175 1 168 2.83e-15 72.8
Msa1177500 MtrunA17_Chr8g0375661 30.201 149 96 5 27 170 17 162 3.41e-15 69.7
Msa1177500 MtrunA17_Chr8g0375641 33.929 112 72 2 60 170 52 162 8.18e-15 68.9
Msa1177500 MtrunA17_Chr8g0375671 33.981 103 67 1 60 162 52 153 2.44e-14 70.1
Msa1177500 MtrunA17_Chr3g0093741 30.968 155 93 3 27 174 17 164 3.05e-14 69.7
Msa1177500 MtrunA17_Chr4g0006371 30.657 137 85 4 43 174 48 179 7.22e-14 68.6
Msa1177500 MtrunA17_Chr8g0345831 29.730 111 75 1 51 161 33 140 1.01e-13 68.2
Msa1177500 MtrunA17_Chr3g0128001 32.353 102 63 1 60 161 38 133 1.54e-13 67.4
Msa1177500 MtrunA17_Chr1g0179801 30.625 160 96 5 27 175 26 181 1.58e-13 67.8
Msa1177500 MtrunA17_Chr3g0093751 29.677 155 95 3 27 174 17 164 1.72e-13 67.4
Msa1177500 MtrunA17_Chr5g0437181 30.645 124 81 2 56 175 45 167 2.17e-13 67.4
Msa1177500 MtrunA17_Chr5g0423201 26.316 152 96 3 27 166 12 159 1.04e-12 65.5
Msa1177500 MtrunA17_Chr1g0162361 33.962 106 60 4 60 165 27 122 1.07e-12 65.1
Msa1177500 MtrunA17_Chr5g0423211 29.333 150 96 6 27 172 12 155 2.85e-12 63.9
Msa1177500 MtrunA17_Chr5g0412671 36.782 87 52 2 44 130 24 107 2.97e-12 63.9
Msa1177500 MtrunA17_Chr5g0421041 28.477 151 91 4 27 166 12 156 3.45e-12 63.9
Msa1177500 MtrunA17_Chr7g0250511 25.926 135 95 2 30 161 16 148 4.09e-12 63.5
Msa1177500 MtrunA17_Chr5g0412651 35.165 91 56 2 44 134 24 111 4.12e-12 63.5
Msa1177500 MtrunA17_Chr3g0093761 29.487 156 93 5 27 174 17 163 6.54e-12 63.2
Msa1177500 MtrunA17_Chr5g0421101 31.288 163 96 8 27 184 12 163 8.59e-12 62.8
Msa1177500 MtrunA17_Chr7g0239101 28.058 139 88 4 28 161 20 151 9.11e-12 62.8
Msa1177500 MtrunA17_Chr4g0045461 34.444 90 56 1 40 126 6 95 9.12e-12 62.8
Msa1177500 MtrunA17_Chr8g0375601 29.747 158 96 7 28 174 11 164 9.38e-12 62.8
Msa1177500 MtrunA17_Chr4g0045451 35.556 90 55 1 40 126 6 95 9.57e-12 62.4
Msa1177500 MtrunA17_Chr7g0239121 31.132 106 68 3 57 162 48 148 9.60e-12 62.4
Msa1177500 MtrunA17_Chr5g0420891 28.188 149 97 5 28 172 12 154 1.17e-11 60.1
Msa1177500 MtrunA17_Chr4g0045471 37.349 83 49 1 51 130 17 99 1.36e-11 62.0
Msa1177500 MtrunA17_Chr1g0184161 31.034 116 72 4 46 158 26 136 1.76e-11 61.6
Msa1177500 MtrunA17_Chr8g0371921 31.858 113 72 4 51 161 29 138 1.78e-11 61.6
Msa1177500 MtrunA17_Chr5g0398291 31.061 132 80 3 60 181 47 177 2.22e-11 61.6
Msa1177500 MtrunA17_Chr5g0421011 29.661 118 77 3 60 176 47 159 2.88e-11 61.2
Msa1177500 MtrunA17_Chr1g0162191 29.126 103 70 2 60 162 47 146 3.24e-11 60.8
Msa1177500 MtrunA17_Chr1g0184151 35.238 105 62 3 57 158 35 136 3.29e-11 60.8
Msa1177500 MtrunA17_Chr4g0050031 32.773 119 74 3 60 175 62 177 3.73e-11 60.8
Msa1177500 MtrunA17_Chr1g0162321 37.931 87 46 2 45 126 57 140 4.26e-11 60.8
Msa1177500 MtrunA17_Chr5g0412681 35.632 87 45 2 44 130 19 94 4.40e-11 60.5
Msa1177500 MtrunA17_Chr1g0162351 37.931 87 46 2 45 126 57 140 4.83e-11 60.5
Msa1177500 MtrunA17_Chr1g0184121 31.532 111 70 3 46 155 25 130 5.15e-11 60.5
Msa1177500 MtrunA17_Chr7g0265351 28.448 116 77 1 60 175 39 148 5.25e-11 60.5
Msa1177500 MtrunA17_Chr7g0239111 30.189 106 69 2 57 162 52 152 5.28e-11 60.5
Msa1177500 MtrunA17_Chr5g0420951 26.623 154 106 3 11 161 1 150 6.41e-11 60.1
Msa1177500 MtrunA17_Chr4g0045441 28.571 119 79 2 40 155 6 121 7.77e-11 60.1
Msa1177500 MtrunA17_Chr5g0423221 27.778 162 103 7 27 184 36 187 8.12e-11 60.1
Msa1177500 MtrunA17_Chr5g0421091 28.947 152 89 6 28 166 11 156 8.27e-11 59.7
Msa1177500 MtrunA17_Chr5g0420901 28.758 153 99 6 28 176 12 158 9.73e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177500 AT5G59540.2 54.598 174 72 4 17 184 14 186 5.25e-61 191
Msa1177500 AT5G59540.1 54.598 174 72 4 17 184 14 186 2.50e-60 192
Msa1177500 AT1G06640.3 53.614 166 71 2 16 175 14 179 1.53e-59 187
Msa1177500 AT1G06640.2 53.614 166 71 2 16 175 14 179 2.19e-59 188
Msa1177500 AT1G06640.1 53.614 166 71 2 16 175 14 179 1.09e-58 188
Msa1177500 AT1G06650.1 51.807 166 74 2 16 175 14 179 1.22e-58 186
Msa1177500 AT1G06650.2 51.807 166 74 2 16 175 14 179 5.91e-58 186
Msa1177500 AT1G06620.2 51.250 160 74 2 19 175 18 176 4.97e-56 178
Msa1177500 AT1G04350.1 51.829 164 70 3 16 174 10 169 2.48e-55 179
Msa1177500 AT1G06620.1 51.250 160 74 2 19 175 18 176 5.41e-55 178
Msa1177500 AT2G30830.1 50.311 161 79 1 16 175 9 169 4.39e-53 173
Msa1177500 AT2G30840.2 47.879 165 81 2 16 175 9 173 1.01e-52 171
Msa1177500 AT5G59530.1 52.000 175 74 6 17 184 13 184 1.01e-52 172
Msa1177500 AT5G43440.2 47.778 180 83 4 15 186 11 187 1.36e-52 170
Msa1177500 AT2G30840.1 47.879 165 81 2 16 175 9 173 2.53e-52 171
Msa1177500 AT2G30840.3 47.879 165 81 2 16 175 9 173 2.86e-52 171
Msa1177500 AT5G43440.1 47.222 180 84 4 15 186 11 187 1.17e-51 169
Msa1177500 AT5G43450.2 43.889 180 87 3 15 186 11 184 5.54e-51 166
Msa1177500 AT1G06645.1 52.941 153 66 2 16 162 27 179 7.19e-51 168
Msa1177500 AT1G03410.2 48.795 166 78 3 16 175 8 172 1.97e-50 166
Msa1177500 AT5G43450.1 43.889 180 87 3 15 186 11 184 2.78e-50 166
Msa1177500 AT1G03410.1 48.795 166 78 3 16 175 45 209 3.53e-50 167
Msa1177500 AT2G25450.1 48.765 162 80 2 16 175 9 169 1.36e-49 164
Msa1177500 AT3G61400.2 45.882 170 81 3 15 175 12 179 3.67e-48 159
Msa1177500 AT3G61400.1 45.882 170 81 3 15 175 12 179 1.50e-47 159
Msa1177500 AT1G04380.2 43.529 170 78 3 16 184 13 165 1.40e-44 149
Msa1177500 AT1G04380.1 43.529 170 78 3 16 184 13 165 9.25e-44 149
Msa1177500 AT1G03400.1 45.783 166 73 4 16 175 8 162 1.92e-42 145
Msa1177500 AT1G03400.2 45.783 166 73 4 16 175 8 162 5.19e-42 145
Msa1177500 AT1G55290.1 30.519 154 94 5 27 174 25 171 5.71e-19 83.2
Msa1177500 AT3G13610.1 30.065 153 95 4 27 174 26 171 1.13e-18 82.4
Msa1177500 AT3G12900.1 31.788 151 99 3 27 175 21 169 8.04e-18 80.1
Msa1177500 AT2G36690.2 31.034 145 89 3 25 161 18 159 8.48e-15 71.6
Msa1177500 AT2G36690.1 31.034 145 89 3 25 161 18 159 8.48e-15 71.6
Msa1177500 AT4G10500.1 29.412 102 69 1 60 161 44 142 8.18e-13 65.9
Msa1177500 AT3G55970.2 28.926 121 81 2 59 175 51 170 1.33e-12 65.1
Msa1177500 AT3G55970.1 28.926 121 81 2 59 175 51 170 2.06e-12 64.7
Msa1177500 AT3G19010.2 31.933 119 71 3 55 168 23 136 2.43e-12 64.3
Msa1177500 AT3G19010.3 31.933 119 71 3 55 168 23 136 2.49e-12 64.3
Msa1177500 AT3G19010.1 31.933 119 71 3 55 168 23 136 2.67e-12 64.3
Msa1177500 AT3G19010.4 31.933 119 71 3 55 168 23 136 2.67e-12 64.3
Msa1177500 AT2G38240.1 27.027 148 98 3 20 163 4 145 3.83e-12 63.9
Msa1177500 AT5G05600.2 28.302 106 75 1 56 161 58 162 8.01e-12 62.8
Msa1177500 AT2G44800.1 26.897 145 100 3 21 161 9 151 1.03e-11 62.8
Msa1177500 AT5G05600.1 28.302 106 75 1 56 161 58 162 1.31e-11 62.8
Msa1177500 AT5G24530.1 27.451 102 68 1 60 161 38 133 2.12e-11 62.0
Msa1177500 AT4G10490.1 26.471 102 72 1 60 161 42 140 2.16e-11 62.0
Msa1177500 AT4G22880.1 31.633 98 64 2 60 155 47 143 3.64e-11 61.2
Msa1177500 AT4G22880.2 31.633 98 64 2 60 155 47 143 3.64e-11 61.2
Msa1177500 AT4G22880.3 31.633 98 64 2 60 155 47 143 3.64e-11 61.2
Msa1177500 AT4G25300.1 32.000 125 78 5 40 161 30 150 5.39e-11 60.8
Msa1177500 AT3G19000.2 31.034 116 67 5 60 168 32 141 5.47e-11 60.5
Msa1177500 AT1G77330.1 29.323 133 70 4 59 181 2 120 6.03e-11 60.5
Msa1177500 AT3G19000.1 31.034 116 67 5 60 168 32 141 7.99e-11 60.1

Find 39 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCTCACCAGCACTTAAT+TGG 0.240215 8_1:+9877598 Msa1177500:CDS
GCAACATGATCCCTTTGTTT+TGG 0.275541 8_1:-9882018 None:intergenic
GAAACAAAAGCTGGTGTAAA+AGG 0.285364 8_1:+9877234 Msa1177500:CDS
TCTTCTGGTTTGGGAGTATC+AGG 0.295482 8_1:-9877648 None:intergenic
ATCAGGTTGATGATGGAATA+AGG 0.321050 8_1:-9877289 None:intergenic
TAGGCTAACTCATATTTATC+AGG 0.330157 8_1:-9877306 None:intergenic
AAAATTGCTATTATAAATAA+AGG 0.338787 8_1:-9877568 None:intergenic
AATAACATGGCTTGTGTTGT+AGG 0.361872 8_1:-9877325 None:intergenic
TACAGGAATATCTTCTGGTT+TGG 0.364821 8_1:-9877658 None:intergenic
ACAGGAATATCTTCTGGTTT+GGG 0.374059 8_1:-9877657 None:intergenic
CATACTACAGGAATATCTTC+TGG 0.395763 8_1:-9877663 None:intergenic
AGTTGAAAGATGGTGTTAAG+AGG 0.407849 8_1:+9877487 Msa1177500:CDS
CATATTTATCAGGTTGATGA+TGG 0.411678 8_1:-9877296 None:intergenic
AAGATTTGTATACTAGAGAT+AGG 0.424171 8_1:+9877538 Msa1177500:CDS
GAATCAAGGTTAGGCTTGGC+TGG 0.466069 8_1:-9877183 None:intergenic
GTTAGGCTTGGCTGGATAAG+TGG 0.481084 8_1:-9877175 None:intergenic
GTTCATTCAATATAGAATCA+AGG 0.486469 8_1:-9877197 None:intergenic
GGTTGATGATGGAATAAGGT+AGG 0.489286 8_1:-9877285 None:intergenic
TTCAATATAGAATCAAGGTT+AGG 0.490953 8_1:-9877192 None:intergenic
AACTCCTCAAGAACACTCAA+AGG 0.516232 8_1:-9877468 None:intergenic
GGTGTAAAAGGACTTGTTGA+TGG 0.518526 8_1:+9877246 Msa1177500:CDS
GTATCTCTCCAATTAAGTGC+TGG 0.524725 8_1:-9877606 None:intergenic
ACTCCTCAAGAACACTCAAA+GGG 0.527377 8_1:-9877467 None:intergenic
TAAAGGAAGCATGTGAAACA+TGG 0.530210 8_1:+9877415 Msa1177500:CDS
AAGATATTCCTGTAGTATGC+AGG 0.540298 8_1:+9877667 Msa1177500:CDS
TACACATACCTGCATACTAC+AGG 0.542466 8_1:-9877675 None:intergenic
TATAGAATCAAGGTTAGGCT+TGG 0.544202 8_1:-9877187 None:intergenic
AATCCCTTTGAGTGTTCTTG+AGG 0.545874 8_1:+9877464 Msa1177500:CDS
GGAATACGAACCAAAACAAA+GGG 0.551392 8_1:+9882008 Msa1177500:CDS
GTTCTTGAGGAGTTGAAAGA+TGG 0.561567 8_1:+9877477 Msa1177500:CDS
ATATCTGCAAGGTCTATGAC+AGG 0.576610 8_1:-9877348 None:intergenic
GCATTTGATGAAACAAAAGC+TGG 0.578863 8_1:+9877225 Msa1177500:CDS
AAAGGAAGCATGTGAAACAT+GGG 0.585515 8_1:+9877416 Msa1177500:CDS
GTTGATGATGGAATAAGGTA+GGG 0.587595 8_1:-9877284 None:intergenic
CTTTATTGTCAATATCTGCA+AGG 0.600509 8_1:-9877359 None:intergenic
GGGAATACGAACCAAAACAA+AGG 0.635320 8_1:+9882007 Msa1177500:intron
GGTCTATGACAGGAATAACA+TGG 0.684175 8_1:-9877338 None:intergenic
AAGGAAGCATGTGAAACATG+GGG 0.687924 8_1:+9877417 Msa1177500:CDS
GTAAAAGGACTTGTTGATGG+AGG 0.724997 8_1:+9877249 Msa1177500:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTGCTATTATAAATAA+AGG - chr8_1:9877571-9877590 None:intergenic 10.0%
!! TTAAGTTAAATACTTAAATT+TGG + chr8_1:9877926-9877945 Msa1177500:intron 10.0%
!!! TTTTTTTTTAAAGTAACAAA+CGG - chr8_1:9880208-9880227 None:intergenic 10.0%
!! TAACTGATAGATATTATAAA+AGG + chr8_1:9878242-9878261 Msa1177500:intron 15.0%
!!! AAGCAGTTTTTTATTTTTTT+AGG - chr8_1:9878286-9878305 None:intergenic 15.0%
!! AAAAAAAACTGTAAATACAA+TGG + chr8_1:9879704-9879723 Msa1177500:intron 15.0%
!! ATATATAGTTTATCATATAC+TGG + chr8_1:9879933-9879952 Msa1177500:intron 15.0%
!!! TGTGCAATTTTAAATTTTAA+TGG - chr8_1:9880127-9880146 None:intergenic 15.0%
!!! TTTGAAATGAAAAATTGTTA+AGG + chr8_1:9880247-9880266 Msa1177500:intron 15.0%
!! TTGAAATGAAAAATTGTTAA+GGG + chr8_1:9880248-9880267 Msa1177500:intron 15.0%
!! AATCAAATTATAAACGAAAT+GGG - chr8_1:9880322-9880341 None:intergenic 15.0%
!!! TTTACACTATTTTCTTTTAT+AGG + chr8_1:9880365-9880384 Msa1177500:intron 15.0%
!! TAAAATTAAGTAGAATAAGT+AGG + chr8_1:9880429-9880448 Msa1177500:intron 15.0%
!! AAAATTAAGTAGAATAAGTA+GGG + chr8_1:9880430-9880449 Msa1177500:intron 15.0%
!! AAACTTAATTTAGATTTAAG+TGG + chr8_1:9881213-9881232 Msa1177500:intron 15.0%
!!! TTACTTTGTCAACAATTTTT+TGG - chr8_1:9877398-9877417 None:intergenic 20.0%
!! AAAAATTGTTGACAAAGTAA+AGG + chr8_1:9877398-9877417 Msa1177500:CDS 20.0%
!! CGGTTAGAAAATATAAAATA+TGG - chr8_1:9877843-9877862 None:intergenic 20.0%
!!! AATTTCTAGTTAACATGAAA+AGG - chr8_1:9878192-9878211 None:intergenic 20.0%
!! ATTAAATAATCAAACTTCTG+AGG + chr8_1:9878887-9878906 Msa1177500:intron 20.0%
!!! ATGATTTTGATTAGACATTT+AGG - chr8_1:9878993-9879012 None:intergenic 20.0%
!! CTTAAATAAGATGAAAGATA+GGG - chr8_1:9879088-9879107 None:intergenic 20.0%
!!! CTATCTTTCATCTTATTTAA+GGG + chr8_1:9879087-9879106 Msa1177500:intron 20.0%
!!! TATCTTTCATCTTATTTAAG+GGG + chr8_1:9879088-9879107 Msa1177500:intron 20.0%
!! TCGTACTATATTTCAAAATA+AGG - chr8_1:9879965-9879984 None:intergenic 20.0%
!!! GCAATTTTAAATTTTAATGG+TGG - chr8_1:9880124-9880143 None:intergenic 20.0%
!! GAATCAAATTATAAACGAAA+TGG - chr8_1:9880323-9880342 None:intergenic 20.0%
!! AAGAAAATAGTGTAAAAAGA+AGG - chr8_1:9880361-9880380 None:intergenic 20.0%
!! TTAATTCTTTACATACCAAA+TGG + chr8_1:9880401-9880420 Msa1177500:intron 20.0%
!!! CTTAATTTTATAAGTCCATT+TGG - chr8_1:9880419-9880438 None:intergenic 20.0%
!! TTCATCGCTTTATATAATTT+GGG - chr8_1:9880663-9880682 None:intergenic 20.0%
!! GATAAATTAGATAAAAACAG+AGG + chr8_1:9880732-9880751 Msa1177500:intron 20.0%
!!! TTTATCATTTGAGTTAGAAT+TGG - chr8_1:9881163-9881182 None:intergenic 20.0%
!!! ATAGTTAATTTGTATGCTAA+TGG - chr8_1:9881268-9881287 None:intergenic 20.0%
!! TATGAAATTAATTGTTAGAG+TGG + chr8_1:9881570-9881589 Msa1177500:intron 20.0%
!!! TTTTTTGAATTTTGAATCGA+AGG - chr8_1:9881928-9881947 None:intergenic 20.0%
! TTCAATATAGAATCAAGGTT+AGG - chr8_1:9877195-9877214 None:intergenic 25.0%
! GTTCATTCAATATAGAATCA+AGG - chr8_1:9877200-9877219 None:intergenic 25.0%
!!! ACAATTTTTTGGTGAATACT+TGG - chr8_1:9877387-9877406 None:intergenic 25.0%
!!! TTTTTTCAGGTTGTTAATCA+TGG + chr8_1:9877441-9877460 Msa1177500:CDS 25.0%
! AAGATTTGTATACTAGAGAT+AGG + chr8_1:9877538-9877557 Msa1177500:CDS 25.0%
!! AGATACTTTTACATGTTACT+TGG + chr8_1:9877623-9877642 Msa1177500:CDS 25.0%
! TTTATGTACTCTTTCAACTT+TGG + chr8_1:9877713-9877732 Msa1177500:intron 25.0%
! TGAACAAATTGAAGAAACAA+CGG + chr8_1:9877958-9877977 Msa1177500:intron 25.0%
!! AGAGAAAATGTTGTTTGTAT+CGG + chr8_1:9878107-9878126 Msa1177500:intron 25.0%
! AGAGATATATTGCTAGAATA+TGG + chr8_1:9878322-9878341 Msa1177500:intron 25.0%
! GAAAATACATGAGAAATCTA+GGG + chr8_1:9878344-9878363 Msa1177500:intron 25.0%
! AAAATACATGAGAAATCTAG+GGG + chr8_1:9878345-9878364 Msa1177500:intron 25.0%
! ATTTATCCTGATAAAGAACT+TGG - chr8_1:9878567-9878586 None:intergenic 25.0%
! AAGTTCTTTATCAGGATAAA+TGG + chr8_1:9878566-9878585 Msa1177500:intron 25.0%
!! AGTACATTACTAAGAGTTTT+TGG - chr8_1:9878680-9878699 None:intergenic 25.0%
! TAGTCATTGATGCAAAATTA+TGG + chr8_1:9878726-9878745 Msa1177500:intron 25.0%
! AGTCATTGATGCAAAATTAT+GGG + chr8_1:9878727-9878746 Msa1177500:intron 25.0%
! ATCAATTCTTCAAAATCTCA+GGG - chr8_1:9878797-9878816 None:intergenic 25.0%
! AATCAATTCTTCAAAATCTC+AGG - chr8_1:9878798-9878817 None:intergenic 25.0%
! AATCTTTGTTAACTGTCTAA+TGG + chr8_1:9878858-9878877 Msa1177500:intron 25.0%
! CCTTAAATAAGATGAAAGAT+AGG - chr8_1:9879089-9879108 None:intergenic 25.0%
!! CCTATCTTTCATCTTATTTA+AGG + chr8_1:9879086-9879105 Msa1177500:intron 25.0%
!!! TTTTATTTGTTGTTGTGTGA+AGG + chr8_1:9879269-9879288 Msa1177500:intron 25.0%
! TTAATAGTAACTGCAAAATC+AGG + chr8_1:9880096-9880115 Msa1177500:intron 25.0%
! ATTATAAACGAAATGGGTAT+CGG - chr8_1:9880316-9880335 None:intergenic 25.0%
! TTACATACCAAATGAACTTA+CGG + chr8_1:9880469-9880488 Msa1177500:intron 25.0%
! CAATTTATCATGTGTTCTAT+AGG - chr8_1:9880634-9880653 None:intergenic 25.0%
! GTTCATCGCTTTATATAATT+TGG - chr8_1:9880664-9880683 None:intergenic 25.0%
! AATTATATAAAGCGATGAAC+AGG + chr8_1:9880664-9880683 Msa1177500:intron 25.0%
! AATTAGATAAAAACAGAGGT+AGG + chr8_1:9880736-9880755 Msa1177500:intron 25.0%
! ATTAGATAAAAACAGAGGTA+GGG + chr8_1:9880737-9880756 Msa1177500:intron 25.0%
! AGCAAATTGATTAAAGAGAA+AGG + chr8_1:9880763-9880782 Msa1177500:intron 25.0%
! GCAAATTGATTAAAGAGAAA+GGG + chr8_1:9880764-9880783 Msa1177500:intron 25.0%
! ATAACAATGTCTATTTAACC+AGG + chr8_1:9880809-9880828 Msa1177500:intron 25.0%
! AGGTTCTTTAATTAACCAAT+GGG + chr8_1:9880829-9880848 Msa1177500:intron 25.0%
!!! GTCCAAATATTTTGATGTAT+GGG - chr8_1:9880896-9880915 None:intergenic 25.0%
!!! TGTCCAAATATTTTGATGTA+TGG - chr8_1:9880897-9880916 None:intergenic 25.0%
! ATTTGGACATCTTAACATAT+TGG + chr8_1:9880908-9880927 Msa1177500:intron 25.0%
! TTTATAGTAGAACCACATTT+AGG + chr8_1:9881369-9881388 Msa1177500:intron 25.0%
!! TATTTTCAAATGCCTAAATG+TGG - chr8_1:9881384-9881403 None:intergenic 25.0%
! GTTCCAAAACAAAACAAATT+TGG + chr8_1:9881512-9881531 Msa1177500:intron 25.0%
!!! TGTCCAAATTTGTTTTGTTT+TGG - chr8_1:9881518-9881537 None:intergenic 25.0%
! CAAACCATCCTATTTAAATT+GGG - chr8_1:9881695-9881714 None:intergenic 25.0%
! TCAAACCATCCTATTTAAAT+TGG - chr8_1:9881696-9881715 None:intergenic 25.0%
!! CATTTTTCTTGGTTCAATTT+TGG - chr8_1:9881807-9881826 None:intergenic 25.0%
! ACCAAGAAAAATGAAAAACT+TGG + chr8_1:9881814-9881833 Msa1177500:intron 25.0%
!!! ACCAAGTTTTTCATTTTTCT+TGG - chr8_1:9881818-9881837 None:intergenic 25.0%
!! CATATTTATCAGGTTGATGA+TGG - chr8_1:9877299-9877318 None:intergenic 30.0%
TAGGCTAACTCATATTTATC+AGG - chr8_1:9877309-9877328 None:intergenic 30.0%
CTTTATTGTCAATATCTGCA+AGG - chr8_1:9877362-9877381 None:intergenic 30.0%
GGTATAATTGAATGTAACCA+TGG - chr8_1:9877822-9877841 None:intergenic 30.0%
GATTAAATAGAACTCTCATG+TGG - chr8_1:9878222-9878241 None:intergenic 30.0%
GGAAAATACATGAGAAATCT+AGG + chr8_1:9878343-9878362 Msa1177500:intron 30.0%
TCCAAACCATCTAAAAGATA+TGG + chr8_1:9878408-9878427 Msa1177500:intron 30.0%
! TCCATATCTTTTAGATGGTT+TGG - chr8_1:9878412-9878431 None:intergenic 30.0%
! CACAATCCATATCTTTTAGA+TGG - chr8_1:9878417-9878436 None:intergenic 30.0%
GAAATCATTATCAGAATGCT+TGG - chr8_1:9878509-9878528 None:intergenic 30.0%
!!! ACTACTCTTTTTTGGCATTT+AGG + chr8_1:9878830-9878849 Msa1177500:intron 30.0%
!! AATAATCAAACTTCTGAGGT+AGG + chr8_1:9878891-9878910 Msa1177500:intron 30.0%
!! ATAATCAAACTTCTGAGGTA+GGG + chr8_1:9878892-9878911 Msa1177500:intron 30.0%
! ATTAGACATTTAGGTTTGCA+CGG - chr8_1:9878984-9879003 None:intergenic 30.0%
!! AAATCATCATTGTGCTGTTT+CGG + chr8_1:9879006-9879025 Msa1177500:intron 30.0%
AATTAGTCCTATCCATTTGA+GGG - chr8_1:9879188-9879207 None:intergenic 30.0%
TAATTAGTCCTATCCATTTG+AGG - chr8_1:9879189-9879208 None:intergenic 30.0%
AAACAAACGATTATCGCATT+AGG - chr8_1:9879251-9879270 None:intergenic 30.0%
AAACATGCAACAGATATTCT+TGG - chr8_1:9879407-9879426 None:intergenic 30.0%
TCTGATAAGAGTTCCTTTAT+AGG - chr8_1:9879470-9879489 None:intergenic 30.0%
CACATTTCAAGATTTGAACT+AGG + chr8_1:9879579-9879598 Msa1177500:intron 30.0%
GAAATAAGATCACAATCATG+TGG - chr8_1:9879673-9879692 None:intergenic 30.0%
TAAATACAATGGTCATGCTA+TGG + chr8_1:9879715-9879734 Msa1177500:intron 30.0%
AATCTCCGATTTAAAGAGAA+AGG + chr8_1:9879786-9879805 Msa1177500:intron 30.0%
ATCTCCGATTTAAAGAGAAA+GGG + chr8_1:9879787-9879806 Msa1177500:intron 30.0%
TAAAACAGAGTTTGACTAAG+AGG + chr8_1:9879817-9879836 Msa1177500:intron 30.0%
ATGCTAATCTTTGTTCGTTA+TGG + chr8_1:9879994-9880013 Msa1177500:intron 30.0%
!! TACACTCTAGTCTTATGAAT+AGG + chr8_1:9880290-9880309 Msa1177500:intron 30.0%
AATAAGTAGGGTAGTTTACA+AGG + chr8_1:9880442-9880461 Msa1177500:intron 30.0%
TAATTCACCGTAAGTTCATT+TGG - chr8_1:9880479-9880498 None:intergenic 30.0%
CAAATCTTTGACAAATGTCA+TGG + chr8_1:9880545-9880564 Msa1177500:intron 30.0%
ATCTAATTTATCAACCCTAG+AGG - chr8_1:9880724-9880743 None:intergenic 30.0%
! CATTGGTTAATTAAAGAACC+TGG - chr8_1:9880830-9880849 None:intergenic 30.0%
CAGGTTCTTTAATTAACCAA+TGG + chr8_1:9880828-9880847 Msa1177500:intron 30.0%
!!! TATTTTGATGTATGGGCAAT+TGG - chr8_1:9880889-9880908 None:intergenic 30.0%
TGCCCATACATCAAAATATT+TGG + chr8_1:9880891-9880910 Msa1177500:intron 30.0%
!! TTCAAGTTGGTTAACATAGT+GGG - chr8_1:9880959-9880978 None:intergenic 30.0%
TTTGCATGAAGTTAATTGAC+AGG - chr8_1:9880982-9881001 None:intergenic 30.0%
! GATCAAGCTAGTTTACATAT+TGG + chr8_1:9881014-9881033 Msa1177500:intron 30.0%
! CAAAGTATTTCTCTAACCAT+TGG + chr8_1:9881094-9881113 Msa1177500:intron 30.0%
CAAGACTAGAATTGTGAATA+GGG - chr8_1:9881128-9881147 None:intergenic 30.0%
ACAAGACTAGAATTGTGAAT+AGG - chr8_1:9881129-9881148 None:intergenic 30.0%
TATTGTTAGACATGGATTCA+AGG - chr8_1:9881297-9881316 None:intergenic 30.0%
TAGAGATTAGTAGCGTTATT+TGG + chr8_1:9881467-9881486 Msa1177500:intron 30.0%
AGAGATTAGTAGCGTTATTT+GGG + chr8_1:9881468-9881487 Msa1177500:intron 30.0%
ATATTTAATTGCCGAATCGT+AGG - chr8_1:9881542-9881561 None:intergenic 30.0%
!! GCATATTACTCTTGTTATTG+AGG - chr8_1:9881596-9881615 None:intergenic 30.0%
GAACTCATTCGTGATTAAAT+TGG + chr8_1:9881714-9881733 Msa1177500:intron 30.0%
AGTGAAAATTAATTCATCCC+AGG - chr8_1:9881751-9881770 None:intergenic 30.0%
! TGTTTATTCAAGTTTGCCTT+CGG - chr8_1:9881872-9881891 None:intergenic 30.0%
!! ATAAACAACGCACTGATTTA+TGG + chr8_1:9881885-9881904 Msa1177500:intron 30.0%
TATAGAATCAAGGTTAGGCT+TGG - chr8_1:9877190-9877209 None:intergenic 35.0%
GCATTTGATGAAACAAAAGC+TGG + chr8_1:9877225-9877244 Msa1177500:CDS 35.0%
GAAACAAAAGCTGGTGTAAA+AGG + chr8_1:9877234-9877253 Msa1177500:CDS 35.0%
!! GTTGATGATGGAATAAGGTA+GGG - chr8_1:9877287-9877306 None:intergenic 35.0%
!! ATCAGGTTGATGATGGAATA+AGG - chr8_1:9877292-9877311 None:intergenic 35.0%
! AATAACATGGCTTGTGTTGT+AGG - chr8_1:9877328-9877347 None:intergenic 35.0%
! TAAAGGAAGCATGTGAAACA+TGG + chr8_1:9877415-9877434 Msa1177500:CDS 35.0%
! AAAGGAAGCATGTGAAACAT+GGG + chr8_1:9877416-9877435 Msa1177500:CDS 35.0%
!!! TGAAACATGGGGATTTTTTC+AGG + chr8_1:9877428-9877447 Msa1177500:CDS 35.0%
! AGTTGAAAGATGGTGTTAAG+AGG + chr8_1:9877487-9877506 Msa1177500:CDS 35.0%
!! TGTTAAGAGGTTTTATGAGC+AGG + chr8_1:9877500-9877519 Msa1177500:CDS 35.0%
!! ACAGGAATATCTTCTGGTTT+GGG - chr8_1:9877660-9877679 None:intergenic 35.0%
! TACAGGAATATCTTCTGGTT+TGG - chr8_1:9877661-9877680 None:intergenic 35.0%
CATACTACAGGAATATCTTC+TGG - chr8_1:9877666-9877685 None:intergenic 35.0%
AAGATATTCCTGTAGTATGC+AGG + chr8_1:9877667-9877686 Msa1177500:CDS 35.0%
! ATGCCTACAATTTAAAGCGT+TGG - chr8_1:9877757-9877776 None:intergenic 35.0%
! GTGAAGCACTAACATATACA+AGG - chr8_1:9877901-9877920 None:intergenic 35.0%
GAACTATTGTCAGAAGCTTT+AGG + chr8_1:9878379-9878398 Msa1177500:intron 35.0%
! AAAGATATGGATTGTGCTGA+AGG + chr8_1:9878421-9878440 Msa1177500:intron 35.0%
TATCCTGATAAAGAACTTGG+AGG - chr8_1:9878564-9878583 None:intergenic 35.0%
TAATGTTGGAGATCTATTGC+AGG + chr8_1:9878624-9878643 Msa1177500:intron 35.0%
!!! GAGAGCAAACTACTCTTTTT+TGG + chr8_1:9878822-9878841 Msa1177500:intron 35.0%
CAGAATGACTCAATTTATCG+TGG + chr8_1:9878933-9878952 Msa1177500:intron 35.0%
!! CGGTAAGTCCTATTTAGTTT+TGG - chr8_1:9878964-9878983 None:intergenic 35.0%
GCAATGTAAGCAACATTAGA+GGG - chr8_1:9879133-9879152 None:intergenic 35.0%
TGCAATGTAAGCAACATTAG+AGG - chr8_1:9879134-9879153 None:intergenic 35.0%
CATAAACTTGATCCCTCAAA+TGG + chr8_1:9879173-9879192 Msa1177500:intron 35.0%
AGAGTTCTTGCAAATCATGT+TGG + chr8_1:9879380-9879399 Msa1177500:intron 35.0%
AAAGCTCTATGGACCTATAA+AGG + chr8_1:9879454-9879473 Msa1177500:intron 35.0%
ACTGTGGTTTCTCTGTATAT+GGG - chr8_1:9879503-9879522 None:intergenic 35.0%
AACTGTGGTTTCTCTGTATA+TGG - chr8_1:9879504-9879523 None:intergenic 35.0%
!! GTAGCATACTTTGAAGCAAA+AGG + chr8_1:9879533-9879552 Msa1177500:intron 35.0%
! TTTGAAGCAAAAGGACTAGA+TGG + chr8_1:9879542-9879561 Msa1177500:intron 35.0%
AAGATTTGAACTAGGCAATG+TGG + chr8_1:9879587-9879606 Msa1177500:intron 35.0%
TCTCCGATTTAAAGAGAAAG+GGG + chr8_1:9879788-9879807 Msa1177500:intron 35.0%
AGACCCCTTTCTCTTTAAAT+CGG - chr8_1:9879794-9879813 None:intergenic 35.0%
TACCACATAGACAATCTTGA+TGG + chr8_1:9879896-9879915 Msa1177500:intron 35.0%
ATCCATCAAGATTGTCTATG+TGG - chr8_1:9879901-9879920 None:intergenic 35.0%
TGCAGTTACTATTAACGTTG+CGG - chr8_1:9880091-9880110 None:intergenic 35.0%
ATAAGACTAGAGTGTAGATG+AGG - chr8_1:9880286-9880305 None:intergenic 35.0%
AGTAATCAGAGAAGAGAAGT+GGG - chr8_1:9880602-9880621 None:intergenic 35.0%
TAGTAATCAGAGAAGAGAAG+TGG - chr8_1:9880603-9880622 None:intergenic 35.0%
!! GTTCAAGTTGGTTAACATAG+TGG - chr8_1:9880960-9880979 None:intergenic 35.0%
GTTAATTGACAGGTTCAAGT+TGG - chr8_1:9880972-9880991 None:intergenic 35.0%
TTCATGCAAAAAAGATTGCC+AGG + chr8_1:9880992-9881011 Msa1177500:intron 35.0%
! TATGTAAACTAGCTTGATCC+TGG - chr8_1:9881013-9881032 None:intergenic 35.0%
CTAAGTAACTGTGTTGAAGT+TGG - chr8_1:9881043-9881062 None:intergenic 35.0%
GAATAGGGCTATTAATCCAA+TGG - chr8_1:9881113-9881132 None:intergenic 35.0%
GACAATGCTATTGTTAGACA+TGG - chr8_1:9881305-9881324 None:intergenic 35.0%
AATTTGGACATCCTACGATT+CGG + chr8_1:9881528-9881547 Msa1177500:intron 35.0%
TTCGGCAATTAAATATGCGA+AGG + chr8_1:9881546-9881565 Msa1177500:intron 35.0%
AAATTGGACCTATAGAAACC+TGG + chr8_1:9881730-9881749 Msa1177500:intron 35.0%
AATTGGACCTATAGAAACCT+GGG + chr8_1:9881731-9881750 Msa1177500:intron 35.0%
AATTCATCCCAGGTTTCTAT+AGG - chr8_1:9881741-9881760 None:intergenic 35.0%
GATCTCAAATGAATATCCGA+AGG + chr8_1:9881853-9881872 Msa1177500:intron 35.0%
! TTTTGAATCGAAGGTTCCTA+TGG - chr8_1:9881919-9881938 None:intergenic 35.0%
! TGTTGTTATGATGATGCTCA+GGG + chr8_1:9881987-9882006 Msa1177500:intron 35.0%
GGAATACGAACCAAAACAAA+GGG + chr8_1:9882008-9882027 Msa1177500:CDS 35.0%
!! GGTGTAAAAGGACTTGTTGA+TGG + chr8_1:9877246-9877265 Msa1177500:CDS 40.0%
!! GTAAAAGGACTTGTTGATGG+AGG + chr8_1:9877249-9877268 Msa1177500:CDS 40.0%
!! GGTTGATGATGGAATAAGGT+AGG - chr8_1:9877288-9877307 None:intergenic 40.0%
GGTCTATGACAGGAATAACA+TGG - chr8_1:9877341-9877360 None:intergenic 40.0%
ATATCTGCAAGGTCTATGAC+AGG - chr8_1:9877351-9877370 None:intergenic 40.0%
! AAGGAAGCATGTGAAACATG+GGG + chr8_1:9877417-9877436 Msa1177500:CDS 40.0%
AATCCCTTTGAGTGTTCTTG+AGG + chr8_1:9877464-9877483 Msa1177500:CDS 40.0%
ACTCCTCAAGAACACTCAAA+GGG - chr8_1:9877470-9877489 None:intergenic 40.0%
AACTCCTCAAGAACACTCAA+AGG - chr8_1:9877471-9877490 None:intergenic 40.0%
GTTCTTGAGGAGTTGAAAGA+TGG + chr8_1:9877477-9877496 Msa1177500:CDS 40.0%
ATAGCTCACCAGCACTTAAT+TGG + chr8_1:9877598-9877617 Msa1177500:CDS 40.0%
GTATCTCTCCAATTAAGTGC+TGG - chr8_1:9877609-9877628 None:intergenic 40.0%
TACACATACCTGCATACTAC+AGG - chr8_1:9877678-9877697 None:intergenic 40.0%
! GCACCAACGCTTTAAATTGT+AGG + chr8_1:9877751-9877770 Msa1177500:intron 40.0%
ATGTCTAGCATGTGTCCTAT+CGG + chr8_1:9877782-9877801 Msa1177500:intron 40.0%
ATGTAACCATGGTCTCATGT+TGG - chr8_1:9877811-9877830 None:intergenic 40.0%
CTAATATTGTCACGTGGACA+CGG - chr8_1:9877863-9877882 None:intergenic 40.0%
ACGACACTAATATTGTCACG+TGG - chr8_1:9877869-9877888 None:intergenic 40.0%
GACAATATTAGTGTCGTCTC+TGG + chr8_1:9877872-9877891 Msa1177500:intron 40.0%
CAGGACAAGGAGGATAATAA+TGG - chr8_1:9878462-9878481 None:intergenic 40.0%
ATTGACATTACACCTGTTCC+TGG + chr8_1:9878589-9878608 Msa1177500:intron 40.0%
ACATTAACTATGAGAGCTCC+AGG - chr8_1:9878610-9878629 None:intergenic 40.0%
GGAGCTCTCATAGTTAATGT+TGG + chr8_1:9878610-9878629 Msa1177500:intron 40.0%
TGGCTCGTCCAAAACTAAAT+AGG + chr8_1:9878953-9878972 Msa1177500:intron 40.0%
ACTTGATCCCTCAAATGGAT+AGG + chr8_1:9879178-9879197 Msa1177500:intron 40.0%
!!! GTTGCATGTTTTTTCTGCAC+AGG + chr8_1:9879416-9879435 Msa1177500:intron 40.0%
TATAGGTCCATAGAGCTTTG+AGG - chr8_1:9879453-9879472 None:intergenic 40.0%
!! TTGTTGAGTTGATGCTTGTG+TGG + chr8_1:9879636-9879655 Msa1177500:intron 40.0%
AGTTACTATTAACGTTGCGG+TGG - chr8_1:9880088-9880107 None:intergenic 40.0%
AGAACAACCTTAGACCTCTA+GGG + chr8_1:9880707-9880726 Msa1177500:intron 40.0%
TTATCAACCCTAGAGGTCTA+AGG - chr8_1:9880717-9880736 None:intergenic 40.0%
! CAAGTTGAATTGTAGCCCAT+TGG - chr8_1:9880847-9880866 None:intergenic 40.0%
! TGGGCAATTGGTTGTTTCAA+TGG - chr8_1:9880877-9880896 None:intergenic 40.0%
! GTTATTTGGGATATAGCCGA+GGG + chr8_1:9881481-9881500 Msa1177500:intron 40.0%
! TTTGGAACATCTTGAACCCT+CGG - chr8_1:9881500-9881519 None:intergenic 40.0%
TCTCGCGACCCAATTTAAAT+AGG + chr8_1:9881684-9881703 Msa1177500:intron 40.0%
GCGACCCAATTTAAATAGGA+TGG + chr8_1:9881688-9881707 Msa1177500:intron 40.0%
ATTTATGGCGTTTCCTCCAT+AGG + chr8_1:9881900-9881919 Msa1177500:intron 40.0%
! GTGTTGTTATGATGATGCTC+AGG + chr8_1:9881986-9882005 Msa1177500:intron 40.0%
GGGAATACGAACCAAAACAA+AGG + chr8_1:9882007-9882026 Msa1177500:intron 40.0%
!! GCAACATGATCCCTTTGTTT+TGG - chr8_1:9882021-9882040 None:intergenic 40.0%
!! TCTTCTGGTTTGGGAGTATC+AGG - chr8_1:9877651-9877670 None:intergenic 45.0%
GAAACAACGGCCCAATTCAA+TGG + chr8_1:9877971-9877990 Msa1177500:intron 45.0%
CTGCCACGATCCATTGAATT+GGG - chr8_1:9877984-9878003 None:intergenic 45.0%
!! AATTCTGGTTCAGGACAAGG+AGG - chr8_1:9878472-9878491 None:intergenic 45.0%
!! GTCAATTCTGGTTCAGGACA+AGG - chr8_1:9878475-9878494 None:intergenic 45.0%
TCCTGAACCAGAATTGACTG+TGG + chr8_1:9878477-9878496 Msa1177500:intron 45.0%
CCTGAACCAGAATTGACTGT+GGG + chr8_1:9878478-9878497 Msa1177500:intron 45.0%
GTTGTTCCCACAGTCAATTC+TGG - chr8_1:9878487-9878506 None:intergenic 45.0%
GTGCTTCTCCAAGACCATAT+TGG + chr8_1:9878535-9878554 Msa1177500:intron 45.0%
CTTCTCCAAGACCATATTGG+TGG + chr8_1:9878538-9878557 Msa1177500:intron 45.0%
TGGCCTCCAAGTTCTTTATC+AGG + chr8_1:9878558-9878577 Msa1177500:intron 45.0%
!!! GTTTTTTCTGCACAGGCCAT+AGG + chr8_1:9879423-9879442 Msa1177500:intron 45.0%
!! AGAGCTTTGAGGATGACCTA+TGG - chr8_1:9879442-9879461 None:intergenic 45.0%
AGGTCATCCTCAAAGCTCTA+TGG + chr8_1:9879443-9879462 Msa1177500:intron 45.0%
GTGGTTTCTCTGTATATGGG+AGG - chr8_1:9879500-9879519 None:intergenic 45.0%
TGCTACATAGTCAGCAACTG+TGG - chr8_1:9879519-9879538 None:intergenic 45.0%
GAGAACAACCTTAGACCTCT+AGG + chr8_1:9880706-9880725 Msa1177500:intron 45.0%
! CGTTATTTGGGATATAGCCG+AGG + chr8_1:9881480-9881499 Msa1177500:intron 45.0%
AGAGTAATATGCCTCTCTGC+TGG + chr8_1:9881604-9881623 Msa1177500:intron 45.0%
GAGTAATATGCCTCTCTGCT+GGG + chr8_1:9881605-9881624 Msa1177500:intron 45.0%
AATTGGGTCGCGAGAAAACT+GGG - chr8_1:9881679-9881698 None:intergenic 45.0%
AAATTGGGTCGCGAGAAAAC+TGG - chr8_1:9881680-9881699 None:intergenic 45.0%
TGAATCGAAGGTTCCTATGG+AGG - chr8_1:9881916-9881935 None:intergenic 45.0%
!! AATTAATATATCTTAAAATA+AGG - chr8_1:9878150-9878169 None:intergenic 5.0%
!! TATATAATTATTACAAAAAA+AGG + chr8_1:9881951-9881970 Msa1177500:intron 5.0%
!! ATATAATTATTACAAAAAAA+GGG + chr8_1:9881952-9881971 Msa1177500:intron 5.0%
GTTAGGCTTGGCTGGATAAG+TGG - chr8_1:9877178-9877197 None:intergenic 50.0%
GAATCAAGGTTAGGCTTGGC+TGG - chr8_1:9877186-9877205 None:intergenic 50.0%
! GTCTCATGTTGGTGTCCGAT+AGG - chr8_1:9877800-9877819 None:intergenic 50.0%
GCTGCCACGATCCATTGAAT+TGG - chr8_1:9877985-9878004 None:intergenic 50.0%
GATAGAGTGACCTTGCTACC+AGG - chr8_1:9878007-9878026 None:intergenic 50.0%
!! CCCACAGTCAATTCTGGTTC+AGG - chr8_1:9878481-9878500 None:intergenic 50.0%
GAACTTGGAGGCCACCAATA+TGG - chr8_1:9878552-9878571 None:intergenic 50.0%
ACTATGAGAGCTCCAGGAAC+AGG - chr8_1:9878604-9878623 None:intergenic 50.0%
CGGACACCAACATGAGACCA+TGG + chr8_1:9877802-9877821 Msa1177500:intron 55.0%
CGGCCCAATTCAATGGATCG+TGG + chr8_1:9877978-9877997 Msa1177500:intron 55.0%
TTCAATGGATCGTGGCAGCC+TGG + chr8_1:9877986-9878005 Msa1177500:intron 55.0%
! GGTCTTGGAGAAGCACAGTG+AGG - chr8_1:9878531-9878550 None:intergenic 55.0%
GGAGGCCACCAATATGGTCT+TGG - chr8_1:9878546-9878565 None:intergenic 55.0%
ATGCGAAGATCCCAGCAGAG+AGG - chr8_1:9881618-9881637 None:intergenic 55.0%
ATCGTGGCAGCCTGGTAGCA+AGG + chr8_1:9877994-9878013 Msa1177500:intron 60.0%
TGGGTCGCGAGAAAACTGGG+AGG - chr8_1:9881676-9881695 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 9877168 9882047 9877168 ID=Msa1177500;Name=Msa1177500
chr8_1 mRNA 9877168 9882047 9877168 ID=Msa1177500-mRNA-1;Parent=Msa1177500;Name=Msa1177500-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|0.5|1|1|2|0|186
chr8_1 exon 9877168 9877688 9877168 ID=Msa1177500-mRNA-1:exon:3375;Parent=Msa1177500-mRNA-1
chr8_1 exon 9882008 9882047 9882008 ID=Msa1177500-mRNA-1:exon:3376;Parent=Msa1177500-mRNA-1
chr8_1 CDS 9877168 9877688 9877168 ID=Msa1177500-mRNA-1:cds;Parent=Msa1177500-mRNA-1
chr8_1 CDS 9882008 9882047 9882008 ID=Msa1177500-mRNA-1:cds;Parent=Msa1177500-mRNA-1
Gene Sequence

>Msa1177500

ATGGGAACCACTTATCCAGCCAAGCCTAACCTTGATTCTATATTGAATGAACGCAAAGCATTTGATGAAACAAAAGCTGGTGTAAAAGGACTTGTTGATGGAGGACTTAAGAAGATCCCTACCTTATTCCATCATCAACCTGATAAATATGAGTTAGCCTACAACACAAGCCATGTTATTCCTGTCATAGACCTTGCAGATATTGACAATAAAGATCCAAGTATTCACCAAAAAATTGTTGACAAAGTAAAGGAAGCATGTGAAACATGGGGATTTTTTCAGGTTGTTAATCATGGAATCCCTTTGAGTGTTCTTGAGGAGTTGAAAGATGGTGTTAAGAGGTTTTATGAGCAGGATACAGAAGTCAAAAAAGATTTGTATACTAGAGATAGGCATAGATCCTTTATTTATAATAGCAATTTTGATATTTATAGCTCACCAGCACTTAATTGGAGAGATACTTTTACATGTTACTTGGCTCCTGATACTCCCAAACCAGAAGATATTCCTGTAGTATGCAGGGAATACGAACCAAAACAAAGGGATCATGTTGCAGAATAA
Protein sequence

>Msa1177500

MGTTYPAKPNLDSILNERKAFDETKAGVKGLVDGGLKKIPTLFHHQPDKYELAYNTSHVIPVIDLADIDNKDPSIHQKIVDKVKEACETWGFFQVVNHGIPLSVLEELKDGVKRFYEQDTEVKKDLYTRDRHRSFIYNSNFDIYSSPALNWRDTFTCYLAPDTPKPEDIPVVCREYEPKQRDHVAE*