AlfalfaGEDB | Msa1177830

M. sativa cultivar zhongmu-4 / Msa1177830

KEGG: K22047
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006950 GO:0006979 GO:0008150 GO:0008381 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015267 GO:0016020 GO:0019866 GO:0022803 GO:0022836 GO:0022857 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0034599 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0070887
PFAM: PF00924.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1177830	sp\|Q8VZL4\|MSL1_ARATH	67.010	388	128	0	162	549	108	495	0.0	555

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1177830	A0A072TNQ4	94.011	551	29	2	1	550	1	548	0.0	1031

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0318000	Msa1177830	0.802723	4.900866e-49	-8.615850e-47
Msa0896210	Msa1177830	0.806972	6.344951e-50	-8.615850e-47
Msa1089530	Msa1177830	0.800534	1.378026e-48	-8.615850e-47
Msa1177830	Msa1318120	0.956521	2.424527e-114	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1177830	MtrunA17_Chr8g0348501	94.011	551	29	2	1	550	1	548	0.0	1031
Msa1177830	MtrunA17_Chr3g0132961	23.111	225	163	4	330	544	239	463	2.36e-12	69.7

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1177830	AT4G00290.1	67.010	388	128	0	162	549	108	495	0.0	555
Msa1177830	AT4G00234.1	54.167	264	113	2	105	368	7	262	1.50e-92	284
Msa1177830	AT1G58200.2	24.873	197	141	3	355	544	257	453	1.65e-13	73.9
Msa1177830	AT1G58200.1	24.873	197	141	3	355	544	257	453	1.65e-13	73.9
Msa1177830	AT5G10490.3	22.791	215	145	4	344	544	242	449	5.54e-12	68.9
Msa1177830	AT5G10490.1	22.791	215	145	4	344	544	244	451	5.75e-12	68.9
Msa1177830	AT5G10490.2	22.791	215	145	4	344	544	216	423	7.32e-12	68.6

Showing 1 to 7 of 7 entries

Previous1Next

Find 139 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTGTACTTGGACTTGAT+AGG	0.481759	8_1:-10231420	Msa1177830:CDS
AAATATGCAGAACTGACTCT+TGG	0.474237	8_1:-10228512	Msa1177830:CDS
AACATGGTGGTCGTTCCGGT+TGG	0.531909	8_1:-10232073	Msa1177830:CDS
AAGAAAACAAATATTGAAAA+AGG	0.312178	8_1:-10232976	Msa1177830:five_prime_UTR
AAGAATCATGGTGTTGCTCT+TGG	0.420133	8_1:-10227571	Msa1177830:CDS
AAGAATGGTGAAACAGAAGT+GGG	0.595658	8_1:-10232289	Msa1177830:CDS
AAGGTAACCAAATATCGCAC+TGG	0.515597	8_1:+10231890	None:intergenic
AAGGTTAAGGAAGGTTCTGA+TGG	0.574954	8_1:-10232142	Msa1177830:CDS
AAGTGTACTTGGACTTGATA+GGG	0.534927	8_1:-10231419	Msa1177830:CDS
AATACAGTAATGACATTGTT+TGG	0.312825	8_1:+10232741	None:intergenic

Showing 1 to 10 of 139 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTTAACAATGTCTGCTATT+AGG	-	chr8_1:10227634-10227653	Msa1177830:CDS	30.0%
ATCTCTTCATAGTTCAATCA+AGG	-	chr8_1:10227671-10227690	Msa1177830:intron	30.0%
TCTCTTCATAGTTCAATCAA+GGG	-	chr8_1:10227672-10227691	Msa1177830:intron	30.0%
AATTATCACTCTAACCCTAA+TGG	-	chr8_1:10227726-10227745	Msa1177830:intron	30.0%
ATTATCACTCTAACCCTAAT+GGG	-	chr8_1:10227727-10227746	Msa1177830:intron	30.0%
TCAGACTCAGTTTAGAAATT+TGG	-	chr8_1:10227842-10227861	Msa1177830:intron	30.0%
CAGACTCAGTTTAGAAATTT+GGG	-	chr8_1:10227843-10227862	Msa1177830:intron	30.0%
ATCGTCGAATTAGAAACAAA+AGG	+	chr8_1:10227963-10227982	None:intergenic	30.0%
TTGATAGGATGAAAGATACA+TGG	-	chr8_1:10228126-10228145	Msa1177830:intron	30.0%
TTCACATCCTTATCTTAACA+TGG	-	chr8_1:10228238-10228257	Msa1177830:intron	30.0%

Showing 1 to 10 of 369 entries

Previous1 2 3 4 5…37Next

Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	10227330	10233019	10227330	ID=Msa1177830;Name=Msa1177830
chr8_1	mRNA	10227330	10233019	10227330	ID=Msa1177830-mRNA-1;Parent=Msa1177830;Name=Msa1177830-mRNA-1;_AED=0.18;_eAED=0.18;_QI=162\|1\|1\|1\|0.83\|0.71\|7\|216\|550
chr8_1	exon	10227330	10227653	10227330	ID=Msa1177830-mRNA-1:exon:3562;Parent=Msa1177830-mRNA-1
chr8_1	exon	10228493	10228714	10228493	ID=Msa1177830-mRNA-1:exon:3561;Parent=Msa1177830-mRNA-1
chr8_1	exon	10229719	10229826	10229719	ID=Msa1177830-mRNA-1:exon:3560;Parent=Msa1177830-mRNA-1
chr8_1	exon	10230324	10230424	10230324	ID=Msa1177830-mRNA-1:exon:3559;Parent=Msa1177830-mRNA-1
chr8_1	exon	10231299	10231576	10231299	ID=Msa1177830-mRNA-1:exon:3558;Parent=Msa1177830-mRNA-1
chr8_1	exon	10231872	10232778	10231872	ID=Msa1177830-mRNA-1:exon:3557;Parent=Msa1177830-mRNA-1
chr8_1	exon	10232929	10233019	10232929	ID=Msa1177830-mRNA-1:exon:3556;Parent=Msa1177830-mRNA-1
chr8_1	five_prime_UTR	10232929	10233019	10232929	ID=Msa1177830-mRNA-1:five_prime_utr;Parent=Msa1177830-mRNA-1
chr8_1	five_prime_UTR	10232708	10232778	10232708	ID=Msa1177830-mRNA-1:five_prime_utr;Parent=Msa1177830-mRNA-1
chr8_1	CDS	10231872	10232707	10231872	ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1	CDS	10231299	10231576	10231299	ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1	CDS	10230324	10230424	10230324	ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1	CDS	10229719	10229826	10229719	ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1	CDS	10228493	10228714	10228493	ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1	CDS	10227546	10227653	10227546	ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1	three_prime_UTR	10227330	10227545	10227330	ID=Msa1177830-mRNA-1:three_prime_utr;Parent=Msa1177830-mRNA-1

Gene Sequence

>Msa1177830

ATGTCTGCTATTAGGTTTTCTCATGTAAAATCTCTTCATAGTTCAATCAAGGGTTTTTCCAATTTCAATGTCCAAAATGTTCAAAATTATCACTCTAACCCTAATGGGTCATTGAATCTTGCAAGAATTTCAATTTTTTGTACTGATTTATCGAGCCGTCGTTATTCAAAAAATGGGTCTAAGTCACCTAAGATGTTTGCTCAGACTCAGTTTAGAAATTTGGGTTTTTTATCAGGTCATAGGGGTTTCAAATTCAATGCTGCATTTGAAACCCAAGGGTTTAATTCACCTAGGGTATGTTTCAGTGTTGTTAATGTTCCTTTTGTTTCTAATTCGACGATGACTAATGGGTTGAGTTCCCGAATGTATTCATCGGGTCTGGGAGGGGAAGGAAGTAAGAATGGTGAAACAGAAGTGGGTGTTGGGACTGGTGTGAGTGATGTGAAGGGTGGGGGTGGTGATTCGGTTGTTTCGGGTGATTTGGTTGATAGGATGAAAGATACATGGAAGAGTGTTGTTGAGGCAGTTTCATATGCTGGTGATAAGGTTAAGGAAGGTTCTGATGGTGTTACTCCATATGCTCAACAGTTTCTTGATTCACATCCTTATCTTAACATGGTGGTCGTTCCGGTTGGTGGTACTTTAACTGCTACTCTAGTAGGTTGGTTCATCTTGCCGAGGATTTTGAGGAAATTTCACAAATATGGAATGCAAAGTCCGGTTTCTCTGCTTCAAGGAAACTTGTCAGGGGAGCCAGTTCCTTATGAAAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTGGTTACCTTTTTGGCATTCTCACAAATTGCTGTAATGGTAGCTCCAACAGCTATAGCTTCGCAATACCTTGCACCCACTTGGAGGGGTGCAGTGATTCTTTCTTTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACTTTGTCGAGTCAAAGTGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATCTCGTCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTTACAGTTGGCGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGACGTACTTGGCAATGTGTTTAGCGGTTTATCCATGCAGTTTTCTAAGCCCTTCTCAATTGGAGATACGATAAAAGCTGGATCGATAGAAGGTCAAGTGGTGGAAATTGGTCTTACTAGCACATCATTGCTGAGTCCTGAGAAGTTCCCAGTCATTGTGCCGAACTCATTTTTTTCTAGCCAGGCAATTGTGAACAAGTCCCGTGCCGATTATCGTGCCATTCTTACCAAAATCCCTCTTCAAATTGAGGATTTAAGTAAGATTCCCCATATATCGAATGATATTAAAGGCATGTTAACATCAAATGCAAAAGTTTTCTTAGGAAAAGATGTTCCCTGCTGTTTCTTGTCACGCATGGAAAGTAAATATGCAGAACTGACTCTTGGATACAACCTCAAGAACATGCGCAAAGATGAGTTCTACTCTGCAGAACAAGATATTCTCCTGCAAGCAGTTCAAATCATTAAGAATCATGGTGTTGCTCTTGGAAGCACATGGAATGACACTAAGTAA

Protein sequence

>Msa1177830

MSAIRFSHVKSLHSSIKGFSNFNVQNVQNYHSNPNGSLNLARISIFCTDLSSRRYSKNGSKSPKMFAQTQFRNLGFLSGHRGFKFNAAFETQGFNSPRVCFSVVNVPFVSNSTMTNGLSSRMYSSGLGGEGSKNGETEVGVGTGVSDVKGGGGDSVVSGDLVDRMKDTWKSVVEAVSYAGDKVKEGSDGVTPYAQQFLDSHPYLNMVVVPVGGTLTATLVGWFILPRILRKFHKYGMQSPVSLLQGNLSGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAVMVAPTAIASQYLAPTWRGAVILSFVWFLHRWKTNVFARTLSSQSVLGLDREKMLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEIGLTSTSLLSPEKFPVIVPNSFFSSQAIVNKSRADYRAILTKIPLQIEDLSKIPHISNDIKGMLTSNAKVFLGKDVPCCFLSRMESKYAELTLGYNLKNMRKDEFYSAEQDILLQAVQIIKNHGVALGSTWNDTK*