AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1177830


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177830 MtrunA17_Chr8g0348501 94.011 551 29 2 1 550 1 548 0.0 1031
Msa1177830 MtrunA17_Chr3g0132961 23.111 225 163 4 330 544 239 463 2.36e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1177830 AT4G00290.1 67.010 388 128 0 162 549 108 495 0.0 555
Msa1177830 AT4G00234.1 54.167 264 113 2 105 368 7 262 1.50e-92 284
Msa1177830 AT1G58200.2 24.873 197 141 3 355 544 257 453 1.65e-13 73.9
Msa1177830 AT1G58200.1 24.873 197 141 3 355 544 257 453 1.65e-13 73.9
Msa1177830 AT5G10490.3 22.791 215 145 4 344 544 242 449 5.54e-12 68.9
Msa1177830 AT5G10490.1 22.791 215 145 4 344 544 244 451 5.75e-12 68.9
Msa1177830 AT5G10490.2 22.791 215 145 4 344 544 216 423 7.32e-12 68.6

Find 139 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGACTCAGTTTAGAAATT+TGG 0.094573 8_1:-10232485 Msa1177830:CDS
CTCAATTTGAAGAGGGATTT+TGG 0.122310 8_1:+10228649 None:intergenic
TTGAGGAAATTTCACAAATA+TGG 0.164828 8_1:-10232001 Msa1177830:CDS
CTTTAATATCATTCGATATA+TGG 0.170635 8_1:+10228609 None:intergenic
GGGTGGTGATTCGGTTGTTT+CGG 0.248572 8_1:-10232233 Msa1177830:CDS
GGTGGTGATTCGGTTGTTTC+GGG 0.258012 8_1:-10232232 Msa1177830:CDS
CAGACTCAGTTTAGAAATTT+GGG 0.265782 8_1:-10232484 Msa1177830:CDS
CATATATCGAATGATATTAA+AGG 0.266364 8_1:-10228608 Msa1177830:CDS
GTTTAACAATGTCTGCTATT+AGG 0.276214 8_1:-10232693 Msa1177830:exon
GGAAGACCCAGTGCGATATT+TGG 0.288817 8_1:-10231897 Msa1177830:CDS
AAGAAAACAAATATTGAAAA+AGG 0.312178 8_1:-10232976 Msa1177830:five_prime_UTR
AATACAGTAATGACATTGTT+TGG 0.312825 8_1:+10232741 None:intergenic
TCTAATTCGACGATGACTAA+TGG 0.316756 8_1:-10232358 Msa1177830:CDS
TCTATTTGTGATTGGTATAA+TGG 0.317516 8_1:-10231359 Msa1177830:CDS
GCAAGATTCAATGACCCATT+AGG 0.322768 8_1:+10232586 None:intergenic
TAATGATTTGAACTGCTTGC+AGG 0.324391 8_1:+10227593 None:intergenic
TTTAATATCATTCGATATAT+GGG 0.328592 8_1:+10228610 None:intergenic
AATTATCACTCTAACCCTAA+TGG 0.334727 8_1:-10232601 Msa1177830:CDS
CAAGATTCAATGACCCATTA+GGG 0.335100 8_1:+10232587 None:intergenic
AATGAGTTCGGCACAATGAC+TGG 0.346967 8_1:+10229732 None:intergenic
GGTAAGAATGGCACGATAAT+CGG 0.349808 8_1:+10228670 None:intergenic
TCTATTGGTCTATTTGTGAT+TGG 0.352282 8_1:-10231367 Msa1177830:CDS
TGAGTCTGAGCAAACATCTT+AGG 0.352880 8_1:+10232499 None:intergenic
TCTTAACATGGTGGTCGTTC+CGG 0.362031 8_1:-10232077 Msa1177830:CDS
TTTCGGGTGATTTGGTTGAT+AGG 0.363794 8_1:-10232216 Msa1177830:CDS
CTGCTTCAAGGAAACTTGTC+AGG 0.369298 8_1:-10231959 Msa1177830:CDS
CATTTGTGAGAATGCCAAAA+AGG 0.370440 8_1:+10231871 None:intergenic
CTGTGTAGTCAGATATCATT+TGG 0.375797 8_1:-10227401 Msa1177830:three_prime_UTR
CTAATTCGACGATGACTAAT+GGG 0.378728 8_1:-10232357 Msa1177830:CDS
GTGAGTGATGTGAAGGGTGG+GGG 0.382712 8_1:-10232253 Msa1177830:CDS
TGTGATTGGTATAATGGCTT+TGG 0.384174 8_1:-10231353 Msa1177830:CDS
CAAAATCCCTCTTCAAATTG+AGG 0.387715 8_1:-10228648 Msa1177830:CDS
TTCGGTTGTTTCGGGTGATT+TGG 0.393366 8_1:-10232224 Msa1177830:CDS
ATTATCACTCTAACCCTAAT+GGG 0.397693 8_1:-10232600 Msa1177830:CDS
GAAGGTCAAGTGGTGGAAAT+TGG 0.405677 8_1:-10229792 Msa1177830:CDS
ACTTTAACTGCTACTCTAGT+AGG 0.408075 8_1:-10232046 Msa1177830:CDS
CTAGACAAAATCTCGTCTAT+TGG 0.408910 8_1:-10231382 Msa1177830:CDS
ATCTCTTCATAGTTCAATCA+AGG 0.411159 8_1:-10232656 Msa1177830:CDS
TCAAGAAACTGTTGAGCATA+TGG 0.413338 8_1:+10232112 None:intergenic
AAGAATCATGGTGTTGCTCT+TGG 0.420133 8_1:-10227571 Msa1177830:CDS
GGTGTGAGTGATGTGAAGGG+TGG 0.422401 8_1:-10232256 Msa1177830:CDS
ACAATGACTGGGAACTTCTC+AGG 0.423538 8_1:+10229744 None:intergenic
TGGTATAATGGCTTTGGCTG+AGG 0.423669 8_1:-10231347 Msa1177830:CDS
CTGACGTTAGAAAATTGCTT+TGG 0.433422 8_1:+10227430 None:intergenic
ATATGCTGGTGATAAGGTTA+AGG 0.437929 8_1:-10232155 Msa1177830:CDS
AGTTTCATATGCTGGTGATA+AGG 0.445569 8_1:-10232161 Msa1177830:CDS
CTTAAATCCTCAATTTGAAG+AGG 0.446210 8_1:+10228641 None:intergenic
TGTGAGTGATGTGAAGGGTG+GGG 0.447946 8_1:-10232254 Msa1177830:CDS
TTTCCTTGAAGCAGAGAAAC+CGG 0.450831 8_1:+10231968 None:intergenic
GTGTGAGTGATGTGAAGGGT+GGG 0.450840 8_1:-10232255 Msa1177830:CDS
CTGCTGTTTCTTGTCACGCA+TGG 0.451338 8_1:-10228540 Msa1177830:CDS
CGCAATACCTTGCACCCACT+TGG 0.452124 8_1:-10231522 Msa1177830:CDS
CCTAGGTGAATTAAACCCTT+GGG 0.455004 8_1:+10232414 None:intergenic
CCAGACCCGATGAATACATT+CGG 0.455688 8_1:+10232326 None:intergenic
TATTTAATGCAGTGCTGTAA+TGG 0.456761 8_1:-10231566 Msa1177830:intron
CACATTGCCAAGTACGTCTC+TGG 0.457162 8_1:+10230381 None:intergenic
AGTCCGGTTTCTCTGCTTCA+AGG 0.460352 8_1:-10231971 Msa1177830:CDS
CCCTAGGTGAATTAAACCCT+TGG 0.464043 8_1:+10232413 None:intergenic
GTATTCATCGGGTCTGGGAG+GGG 0.467947 8_1:-10232320 Msa1177830:CDS
TGAAATTTCCTCAAAATCCT+CGG 0.473995 8_1:+10232010 None:intergenic
AAATATGCAGAACTGACTCT+TGG 0.474237 8_1:-10228512 Msa1177830:CDS
CGAATGTATTCATCGGGTCT+GGG 0.479654 8_1:-10232325 Msa1177830:CDS
GTTGAGGCAGTTTCATATGC+TGG 0.479769 8_1:-10232169 Msa1177830:CDS
AAAGTGTACTTGGACTTGAT+AGG 0.481759 8_1:-10231420 Msa1177830:CDS
GTTCAAATCATTAAGAATCA+TGG 0.482628 8_1:-10227583 Msa1177830:CDS
ATTGTTACAGTTGGCGGTGT+AGG 0.488263 8_1:-10231301 Msa1177830:CDS
TTTGCTGCCAGAGACGTACT+TGG 0.490169 8_1:-10230388 Msa1177830:CDS
ACTTTGTGGCTCATATAACT+TGG 0.493805 8_1:+10227323 None:intergenic
TTGTCGAGTCAAAGTGTACT+TGG 0.494844 8_1:-10231430 Msa1177830:CDS
CAAATATGGAATGCAAAGTC+CGG 0.495989 8_1:-10231987 Msa1177830:CDS
AGTTCCCGAATGTATTCATC+GGG 0.500710 8_1:-10232331 Msa1177830:CDS
GTGCAATCTATTGTTACAGT+TGG 0.501112 8_1:-10231310 Msa1177830:CDS
TCATCGGGTCTGGGAGGGGA+AGG 0.505783 8_1:-10232316 Msa1177830:CDS
ATGGTGGTCGTTCCGGTTGG+TGG 0.509478 8_1:-10232070 Msa1177830:CDS
GTGAAACAGAAGTGGGTGTT+GGG 0.512236 8_1:-10232282 Msa1177830:CDS
AAGGTAACCAAATATCGCAC+TGG 0.515597 8_1:+10231890 None:intergenic
CTGCAGGCTGGATCGATAGA+AGG 0.517005 8_1:-10229810 Msa1177830:intron
GACTGGTGTGAGTGATGTGA+AGG 0.517005 8_1:-10232260 Msa1177830:CDS
AATACCTTGCACCCACTTGG+AGG 0.517555 8_1:-10231519 Msa1177830:CDS
GAGTTCCCGAATGTATTCAT+CGG 0.520182 8_1:-10232332 Msa1177830:CDS
CAATCTATTGTTACAGTTGG+CGG 0.523929 8_1:-10231307 Msa1177830:CDS
TTTGGCTGAGGCTTGTGGTG+TGG 0.528203 8_1:-10231335 Msa1177830:CDS
TATCGTATCTCCAATTGAGA+AGG 0.528797 8_1:+10230327 None:intergenic
TGTATTCATCGGGTCTGGGA+GGG 0.528892 8_1:-10232321 Msa1177830:CDS
AACATGGTGGTCGTTCCGGT+TGG 0.531909 8_1:-10232073 Msa1177830:CDS
TTAAATCCTCAATTTGAAGA+GGG 0.533390 8_1:+10228642 None:intergenic
AAGTGTACTTGGACTTGATA+GGG 0.534927 8_1:-10231419 Msa1177830:CDS
GCAGTTAAAGTACCACCAAC+CGG 0.537668 8_1:+10232058 None:intergenic
ATACCTTGCACCCACTTGGA+GGG 0.537762 8_1:-10231518 Msa1177830:CDS
GGAGGGGAAGGAAGTAAGAA+TGG 0.540641 8_1:-10232304 Msa1177830:CDS
TCTCTTCATAGTTCAATCAA+GGG 0.546374 8_1:-10232655 Msa1177830:CDS
ACAGAAGTGGGTGTTGGGAC+TGG 0.546763 8_1:-10232277 Msa1177830:CDS
ATGGCTTTGGCTGAGGCTTG+TGG 0.548571 8_1:-10231340 Msa1177830:CDS
ATCGTATCTCCAATTGAGAA+GGG 0.549105 8_1:+10230328 None:intergenic
ATGACATTGTTTGGAATCAA+CGG 0.550329 8_1:+10232750 None:intergenic
CACCCCTCCAAGTGGGTGCA+AGG 0.550981 8_1:+10231515 None:intergenic
ATCGTCGAATTAGAAACAAA+AGG 0.551686 8_1:+10232367 None:intergenic
TATTGCGAAGCTATAGCTGT+TGG 0.552357 8_1:+10231538 None:intergenic
CATGCGTGACAAGAAACAGC+AGG 0.554317 8_1:+10228541 None:intergenic
AATGCTGCATTTGAAACCCA+AGG 0.554701 8_1:-10232430 Msa1177830:CDS
GTTACAGTTGGCGGTGTAGG+AGG 0.557616 8_1:-10231298 Msa1177830:intron
CAGACCCGATGAATACATTC+GGG 0.564141 8_1:+10232327 None:intergenic
GTACTTGGCAATGTGTTTAG+CGG 0.569884 8_1:-10230373 Msa1177830:CDS
TGCTTCAAGGAAACTTGTCA+GGG 0.571013 8_1:-10231958 Msa1177830:CDS
CCAAGGGTTTAATTCACCTA+GGG 0.571704 8_1:-10232413 Msa1177830:CDS
TACCTTGCACCCACTTGGAG+GGG 0.573754 8_1:-10231517 Msa1177830:CDS
AAGGTTAAGGAAGGTTCTGA+TGG 0.574954 8_1:-10232142 Msa1177830:CDS
ACTGGTGTGAGTGATGTGAA+GGG 0.576942 8_1:-10232259 Msa1177830:CDS
GGTGAAACAGAAGTGGGTGT+TGG 0.578120 8_1:-10232283 Msa1177830:CDS
TAACTGCTACTCTAGTAGGT+TGG 0.579158 8_1:-10232042 Msa1177830:CDS
ATGAGTTCGGCACAATGACT+GGG 0.582174 8_1:+10229733 None:intergenic
TTCACATCCTTATCTTAACA+TGG 0.583287 8_1:-10232089 Msa1177830:CDS
TAAGAATGGTGAAACAGAAG+TGG 0.583533 8_1:-10232290 Msa1177830:CDS
ACGACCACCATGTTAAGATA+AGG 0.587531 8_1:+10232082 None:intergenic
AAGAATGGTGAAACAGAAGT+GGG 0.595658 8_1:-10232289 Msa1177830:CDS
ATGCTGCATTTGAAACCCAA+GGG 0.595801 8_1:-10232429 Msa1177830:CDS
AGTGGTGTACCATGTTCTTG+AGG 0.596617 8_1:+10228483 None:intergenic
TTGATAGGATGAAAGATACA+TGG 0.604293 8_1:-10232201 Msa1177830:CDS
TTAATATCATTCGATATATG+GGG 0.608231 8_1:+10228611 None:intergenic
ATGTATTCATCGGGTCTGGG+AGG 0.608880 8_1:-10232322 Msa1177830:CDS
GCTGGTGATAAGGTTAAGGA+AGG 0.616487 8_1:-10232151 Msa1177830:CDS
TACATGGAAGAGTGTTGTTG+AGG 0.617826 8_1:-10232185 Msa1177830:CDS
CCCAAGGGTTTAATTCACCT+AGG 0.618679 8_1:-10232414 Msa1177830:CDS
TAGGTTGGTTCATCTTGCCG+AGG 0.629438 8_1:-10232027 Msa1177830:CDS
TGGATACAACCTCAAGAACA+TGG 0.631811 8_1:-10228492 Msa1177830:intron
ATCACTGCACCCCTCCAAGT+GGG 0.633969 8_1:+10231508 None:intergenic
ACAACACTGAAACATACCCT+AGG 0.634808 8_1:+10232397 None:intergenic
GAAGGGCTTAGAAAACTGCA+TGG 0.635418 8_1:+10230345 None:intergenic
AGGTAACCAAATATCGCACT+GGG 0.640694 8_1:+10231891 None:intergenic
ATCGATAGAAGGTCAAGTGG+TGG 0.642083 8_1:-10229799 Msa1177830:CDS
AATGGCACGATAATCGGCAC+GGG 0.646394 8_1:+10228676 None:intergenic
GAATGGCACGATAATCGGCA+CGG 0.661082 8_1:+10228675 None:intergenic
TGGATCGATAGAAGGTCAAG+TGG 0.662346 8_1:-10229802 Msa1177830:CDS
AATCACTGCACCCCTCCAAG+TGG 0.673475 8_1:+10231507 None:intergenic
GCTTCAAGGAAACTTGTCAG+GGG 0.689372 8_1:-10231957 Msa1177830:CDS
GTGTTGCTCTTGGAAGCACA+TGG 0.692094 8_1:-10227561 Msa1177830:CDS
TAAGTAACATACTCAACACA+AGG 0.692833 8_1:-10227530 Msa1177830:exon
ACATCCTTATCTTAACATGG+TGG 0.693432 8_1:-10232086 Msa1177830:CDS
ATGCGTGACAAGAAACAGCA+GGG 0.693975 8_1:+10228542 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAGATTAATTAAATTTGA+AGG + chr8_1:10227505-10227524 None:intergenic 10.0%
!! ATTATAAAAAAATTATGTTG+CGG - chr8_1:10228663-10228682 Msa1177830:CDS 10.0%
!!! ATTTTTATGCTTATAAAATA+AGG - chr8_1:10229860-10229879 Msa1177830:intron 10.0%
!!! TTTTTATGCTTATAAAATAA+GGG - chr8_1:10229861-10229880 Msa1177830:intron 10.0%
!! TAATGAAGTAAAATAAAATT+TGG - chr8_1:10230335-10230354 Msa1177830:CDS 10.0%
!! AAAAAAAAAAAAAAAAAAGG+GGG + chr8_1:10230649-10230668 None:intergenic 10.0%
!!! GTATTTTAAATTCATTTATT+TGG - chr8_1:10231395-10231414 Msa1177830:CDS 10.0%
!!! ATTTTAAATTCATTTATTTG+GGG - chr8_1:10231397-10231416 Msa1177830:CDS 10.0%
!! AAGAAAACAAATATTGAAAA+AGG - chr8_1:10227351-10227370 Msa1177830:three_prime_UTR 15.0%
!!! TTTACATTCTTAAAACTTTT+TGG - chr8_1:10229087-10229106 Msa1177830:intron 15.0%
!!! TTTGATGCTTTTTTTTTTTT+GGG + chr8_1:10229459-10229478 None:intergenic 15.0%
!!! ATTTGATGCTTTTTTTTTTT+TGG + chr8_1:10229460-10229479 None:intergenic 15.0%
!! ATCAGTTATAAGAAAAATAA+AGG - chr8_1:10229695-10229714 Msa1177830:intron 15.0%
!!! TTTTATTTCTATCTTTATAC+AGG - chr8_1:10229903-10229922 Msa1177830:intron 15.0%
!! TAGATAAAATGAATACATTA+TGG - chr8_1:10231127-10231146 Msa1177830:intron 15.0%
!! AAAAGATTATTGAGATTATA+AGG + chr8_1:10231519-10231538 None:intergenic 15.0%
!! TTTAATATCATTCGATATAT+GGG + chr8_1:10231720-10231739 None:intergenic 15.0%
!!! ATTTGTTTTAAAAATGCTTT+GGG - chr8_1:10231932-10231951 Msa1177830:CDS 15.0%
!!! GTTATTTTTTTCTATTGAAA+AGG - chr8_1:10232129-10232148 Msa1177830:CDS 15.0%
!! AACCATTTAAAAAAAATTAG+AGG - chr8_1:10232583-10232602 Msa1177830:CDS 15.0%
!!! TACCTCTAATTTTTTTTAAA+TGG + chr8_1:10232588-10232607 None:intergenic 15.0%
!!! GTTTTAAAATGTAAAAAATC+TGG - chr8_1:10232862-10232881 Msa1177830:intron 15.0%
!!! AGTGATAATTTTGAACATTT+TGG + chr8_1:10227716-10227735 None:intergenic 20.0%
!! ATACAAAAAGAGATAAAAAC+AGG + chr8_1:10228519-10228538 None:intergenic 20.0%
!!! TCTTTTTGTATTATGTGTTT+AGG - chr8_1:10228528-10228547 Msa1177830:CDS 20.0%
!!! CTTTTTGTATTATGTGTTTA+GGG - chr8_1:10228529-10228548 Msa1177830:CDS 20.0%
!! TTCTTATAAGTATATCAATC+TGG - chr8_1:10229200-10229219 Msa1177830:intron 20.0%
!! CATAAAAATAAATAAGCAAC+AGG + chr8_1:10229849-10229868 None:intergenic 20.0%
!! ATTTCTTGTAAAAAGTAAAC+CGG + chr8_1:10230066-10230085 None:intergenic 20.0%
!!! AAATATGATTTTTTGAACCA+TGG - chr8_1:10230082-10230101 Msa1177830:intron 20.0%
!!! ATGTTGCAATTATGTTTTTT+AGG - chr8_1:10230146-10230165 Msa1177830:intron 20.0%
!!! TGTTGCAATTATGTTTTTTA+GGG - chr8_1:10230147-10230166 Msa1177830:intron 20.0%
!! CAATTATTTGTTTACATCTA+GGG - chr8_1:10230178-10230197 Msa1177830:intron 20.0%
!! AATTATTTGTTTACATCTAG+GGG - chr8_1:10230179-10230198 Msa1177830:intron 20.0%
!!! ATTTAACGTTGTTCTAATTT+TGG + chr8_1:10230304-10230323 None:intergenic 20.0%
!! AATTAGAACAACGTTAAATA+AGG - chr8_1:10230305-10230324 Msa1177830:intron 20.0%
!! ATTAGAACAACGTTAAATAA+GGG - chr8_1:10230306-10230325 Msa1177830:intron 20.0%
!! TGAAGTAAAATAAAATTTGG+AGG - chr8_1:10230338-10230357 Msa1177830:CDS 20.0%
!! TTATGATTTAAAAAACACCA+AGG + chr8_1:10231091-10231110 None:intergenic 20.0%
!! ATAAGAAGTAACAAACATAT+TGG + chr8_1:10231186-10231205 None:intergenic 20.0%
!! TTAATATCATTCGATATATG+GGG + chr8_1:10231719-10231738 None:intergenic 20.0%
!! CTTTAATATCATTCGATATA+TGG + chr8_1:10231721-10231740 None:intergenic 20.0%
!! CATATATCGAATGATATTAA+AGG - chr8_1:10231719-10231738 Msa1177830:intron 20.0%
!!! CATTTGTTTTAAAAATGCTT+TGG - chr8_1:10231931-10231950 Msa1177830:CDS 20.0%
!! AATAGAAAAAAATAACAAGC+AGG + chr8_1:10232125-10232144 None:intergenic 20.0%
!! TCTATCATGTTAAAAATCTA+GGG + chr8_1:10232513-10232532 None:intergenic 20.0%
!! TTCTATCATGTTAAAAATCT+AGG + chr8_1:10232514-10232533 None:intergenic 20.0%
!! TCTTTTCTTCATACATACTT+AGG - chr8_1:10227429-10227448 Msa1177830:three_prime_UTR 25.0%
!! CTTTTCTTCATACATACTTA+GGG - chr8_1:10227430-10227449 Msa1177830:three_prime_UTR 25.0%
! AGAATTAAAAAGCTTGGAAT+AGG + chr8_1:10227478-10227497 None:intergenic 25.0%
! GGTTTAAGAATTAAAAAGCT+TGG + chr8_1:10227484-10227503 None:intergenic 25.0%
! AATACAGTAATGACATTGTT+TGG + chr8_1:10227589-10227608 None:intergenic 25.0%
!! AACATTTTGGACATTGAAAT+TGG + chr8_1:10227703-10227722 None:intergenic 25.0%
!!! AGAAATTTGGGTTTTTTATC+AGG - chr8_1:10227855-10227874 Msa1177830:intron 25.0%
! TTGAGGAAATTTCACAAATA+TGG - chr8_1:10228326-10228345 Msa1177830:intron 25.0%
!! TTCCTTATGAAAAAAGCTTT+TGG - chr8_1:10228399-10228418 Msa1177830:intron 25.0%
!! TCCTTATGAAAAAAGCTTTT+GGG - chr8_1:10228400-10228419 Msa1177830:intron 25.0%
! TTAAATAAAGGTCTGGATAT+GGG + chr8_1:10228689-10228708 None:intergenic 25.0%
! TTTAAATAAAGGTCTGGATA+TGG + chr8_1:10228690-10228709 None:intergenic 25.0%
!!! ATACACACGGTTTTAAATAA+AGG + chr8_1:10228701-10228720 None:intergenic 25.0%
! TAGTCAAAAAATGATACACA+CGG + chr8_1:10228714-10228733 None:intergenic 25.0%
! TCTATTTGTGATTGGTATAA+TGG - chr8_1:10228968-10228987 Msa1177830:intron 25.0%
!! TTTTCCTTTTACTAGACTTT+TGG - chr8_1:10229112-10229131 Msa1177830:intron 25.0%
! AAAACCAAAAGTCTAGTAAA+AGG + chr8_1:10229119-10229138 None:intergenic 25.0%
!!! AAGATTGTTTTGTAATCCTT+TGG - chr8_1:10229490-10229509 Msa1177830:intron 25.0%
! TATTTAGTGTTTCCTATTGA+AGG - chr8_1:10229533-10229552 Msa1177830:intron 25.0%
! ATCTTAAAATGTCTTGAGTT+GGG - chr8_1:10229586-10229605 Msa1177830:intron 25.0%
! GGACTAAATATTGTATAACT+TGG - chr8_1:10229607-10229626 Msa1177830:intron 25.0%
! TATGCTTATAAAATAAGGGA+TGG - chr8_1:10229865-10229884 Msa1177830:intron 25.0%
!!! TTATGTTTTTTAGGGAAGAA+TGG - chr8_1:10230155-10230174 Msa1177830:intron 25.0%
! GCAATTATTTGTTTACATCT+AGG - chr8_1:10230177-10230196 Msa1177830:intron 25.0%
! TCTATGAAATTCGAAAATTC+TGG - chr8_1:10230424-10230443 Msa1177830:intron 25.0%
!!! TTCGAAAATTCTGGAATATT+TGG - chr8_1:10230433-10230452 Msa1177830:intron 25.0%
! AAAAAAAAAAAAGGGGGAAA+AGG + chr8_1:10230643-10230662 None:intergenic 25.0%
! AACGAAAATCATGATTGATT+TGG + chr8_1:10230845-10230864 None:intergenic 25.0%
!! AAATCAATCATGATTTTCGT+TGG - chr8_1:10230844-10230863 Msa1177830:intron 25.0%
!! GTTTGTTACTTCTTATTTAG+TGG - chr8_1:10231190-10231209 Msa1177830:intron 25.0%
! CTTATTTAGTGGAATAACAA+TGG - chr8_1:10231201-10231220 Msa1177830:intron 25.0%
! GAAATTTGAATATATCTGTG+AGG - chr8_1:10231423-10231442 Msa1177830:CDS 25.0%
! TTCAAAATTTACATATCCTC+TGG + chr8_1:10231457-10231476 None:intergenic 25.0%
! TTAAATCCTCAATTTGAAGA+GGG + chr8_1:10231688-10231707 None:intergenic 25.0%
!! TCAAATGCAAAAGTTTTCTT+AGG - chr8_1:10231752-10231771 Msa1177830:intron 25.0%
!! AAACTATTAGAAGCACAATA+TGG - chr8_1:10232305-10232324 Msa1177830:CDS 25.0%
! AGCATTAGATAGTAAGTTAT+TGG - chr8_1:10232420-10232439 Msa1177830:CDS 25.0%
! GCATTAGATAGTAAGTTATT+GGG - chr8_1:10232421-10232440 Msa1177830:CDS 25.0%
! GAAAATAGTCCAATAATTAG+AGG - chr8_1:10232531-10232550 Msa1177830:CDS 25.0%
!! AGAGGTAAATAGTCTATTTT+AGG - chr8_1:10232601-10232620 Msa1177830:CDS 25.0%
! AAAAGATGTACAACCAAATA+TGG + chr8_1:10232638-10232657 None:intergenic 25.0%
! GTTCAAATCATTAAGAATCA+TGG - chr8_1:10232744-10232763 Msa1177830:five_prime_UTR 25.0%
! ATGACATTGTTTGGAATCAA+CGG + chr8_1:10227580-10227599 None:intergenic 30.0%
GTTTAACAATGTCTGCTATT+AGG - chr8_1:10227634-10227653 Msa1177830:CDS 30.0%
ATCTCTTCATAGTTCAATCA+AGG - chr8_1:10227671-10227690 Msa1177830:intron 30.0%
TCTCTTCATAGTTCAATCAA+GGG - chr8_1:10227672-10227691 Msa1177830:intron 30.0%
AATTATCACTCTAACCCTAA+TGG - chr8_1:10227726-10227745 Msa1177830:intron 30.0%
ATTATCACTCTAACCCTAAT+GGG - chr8_1:10227727-10227746 Msa1177830:intron 30.0%
!!! ACCCATTTTTTGAATAACGA+CGG + chr8_1:10227800-10227819 None:intergenic 30.0%
TCAGACTCAGTTTAGAAATT+TGG - chr8_1:10227842-10227861 Msa1177830:intron 30.0%
CAGACTCAGTTTAGAAATTT+GGG - chr8_1:10227843-10227862 Msa1177830:intron 30.0%
ATCGTCGAATTAGAAACAAA+AGG + chr8_1:10227963-10227982 None:intergenic 30.0%
TTGATAGGATGAAAGATACA+TGG - chr8_1:10228126-10228145 Msa1177830:intron 30.0%
TTCACATCCTTATCTTAACA+TGG - chr8_1:10228238-10228257 Msa1177830:intron 30.0%
TGAAATTTCCTCAAAATCCT+CGG + chr8_1:10228320-10228339 None:intergenic 30.0%
!!! AAGCTTTTTTCATAAGGAAC+TGG + chr8_1:10228398-10228417 None:intergenic 30.0%
! CCTTATGAAAAAAGCTTTTG+GGG - chr8_1:10228401-10228420 Msa1177830:intron 30.0%
TTAAATAGTTGTCGAGGTAA+CGG - chr8_1:10228554-10228573 Msa1177830:CDS 30.0%
CGTCAGAATCTTTGATATTA+TGG - chr8_1:10228586-10228605 Msa1177830:CDS 30.0%
TATTTAATGCAGTGCTGTAA+TGG - chr8_1:10228761-10228780 Msa1177830:intron 30.0%
! CAGTGATTCTTTCTTTTGTA+TGG - chr8_1:10228835-10228854 Msa1177830:intron 30.0%
! TTGTATGGTTTTTGCATAGA+TGG - chr8_1:10228850-10228869 Msa1177830:intron 30.0%
!! GGAAAACAAATGTTTTTGCA+CGG - chr8_1:10228871-10228890 Msa1177830:intron 30.0%
! TCTATTGGTCTATTTGTGAT+TGG - chr8_1:10228960-10228979 Msa1177830:intron 30.0%
!! TTGGTTTTCTACAATGTTGA+TGG - chr8_1:10229131-10229150 Msa1177830:intron 30.0%
GCTCTTTAATATAAGCAAAC+TGG + chr8_1:10229278-10229297 None:intergenic 30.0%
GATGCTTAATATAAGCAAAC+TGG + chr8_1:10229305-10229324 None:intergenic 30.0%
ATAATGCACAATATGTGCAA+GGG - chr8_1:10229362-10229381 Msa1177830:intron 30.0%
ACCTTAAAGATGAATAAGTG+GGG + chr8_1:10229408-10229427 None:intergenic 30.0%
CACCTTAAAGATGAATAAGT+GGG + chr8_1:10229409-10229428 None:intergenic 30.0%
TCACCTTAAAGATGAATAAG+TGG + chr8_1:10229410-10229429 None:intergenic 30.0%
GATCTTAAAATGTCTTGAGT+TGG - chr8_1:10229585-10229604 Msa1177830:intron 30.0%
! GTATTTTCATGTGTTCCAAT+TGG - chr8_1:10229729-10229748 Msa1177830:CDS 30.0%
! TAAGGGATGGAAAATTTTCA+TGG - chr8_1:10229878-10229897 Msa1177830:intron 30.0%
GCATAGATGTGTAAAACAAA+TGG + chr8_1:10230113-10230132 None:intergenic 30.0%
TTGCAACATAACTGCAAATA+AGG + chr8_1:10230135-10230154 None:intergenic 30.0%
AGATATTGCATGTACATTCA+AGG - chr8_1:10230249-10230268 Msa1177830:intron 30.0%
GATATTGCATGTACATTCAA+GGG - chr8_1:10230250-10230269 Msa1177830:intron 30.0%
AATCAGGGTTAAAACATTTG+AGG - chr8_1:10230276-10230295 Msa1177830:intron 30.0%
ATCAGGGTTAAAACATTTGA+GGG - chr8_1:10230277-10230296 Msa1177830:intron 30.0%
TCTCGTAGTAATACATTTGT+TGG + chr8_1:10230367-10230386 None:intergenic 30.0%
TGGCTAGAAAAAAATGAGTT+CGG + chr8_1:10230610-10230629 None:intergenic 30.0%
ACTGACTACTTCTAAATTGT+GGG + chr8_1:10230732-10230751 None:intergenic 30.0%
AAGAAGCAAAGCAATAAAGT+AGG + chr8_1:10230755-10230774 None:intergenic 30.0%
AACAGAATAATAACTCAGTG+AGG + chr8_1:10230962-10230981 None:intergenic 30.0%
! TTTCATCAGTTTTCAAACTG+AGG - chr8_1:10231341-10231360 Msa1177830:CDS 30.0%
TCAAGTAAGCCAATCAAATA+AGG + chr8_1:10231367-10231386 None:intergenic 30.0%
CTTAAATCCTCAATTTGAAG+AGG + chr8_1:10231689-10231708 None:intergenic 30.0%
CATCCTTTATTGCATTTGTT+TGG - chr8_1:10232095-10232114 Msa1177830:CDS 30.0%
AAGCCAAACAAATGCAATAA+AGG + chr8_1:10232101-10232120 None:intergenic 30.0%
ATATCTCACTGTCTCTTAAT+TGG - chr8_1:10232164-10232183 Msa1177830:CDS 30.0%
AACTAGGGTTTCAATAACAT+AGG + chr8_1:10232468-10232487 None:intergenic 30.0%
GAAAAGAACAATGACAACTA+GGG + chr8_1:10232483-10232502 None:intergenic 30.0%
! GTTAAAAATCTAGGGTTTCA+GGG + chr8_1:10232505-10232524 None:intergenic 30.0%
! TGTTAAAAATCTAGGGTTTC+AGG + chr8_1:10232506-10232525 None:intergenic 30.0%
GGTTTAGTCTATTATTTCCA+TGG + chr8_1:10232567-10232586 None:intergenic 30.0%
CAACCAAATATGGTGAAATT+AGG + chr8_1:10232628-10232647 None:intergenic 30.0%
TAAGTAACATACTCAACACA+AGG - chr8_1:10232797-10232816 Msa1177830:intron 30.0%
! TCAACACAAGGACAATTTTT+AGG - chr8_1:10232809-10232828 Msa1177830:intron 30.0%
CAAGATTCAATGACCCATTA+GGG + chr8_1:10227743-10227762 None:intergenic 35.0%
AGCCGTCGTTATTCAAAAAA+TGG - chr8_1:10227795-10227814 Msa1177830:intron 35.0%
GCCGTCGTTATTCAAAAAAT+GGG - chr8_1:10227796-10227815 Msa1177830:intron 35.0%
!!! TGGGTTTTTTATCAGGTCAT+AGG - chr8_1:10227862-10227881 Msa1177830:intron 35.0%
!!! GGGTTTTTTATCAGGTCATA+GGG - chr8_1:10227863-10227882 Msa1177830:intron 35.0%
!!! GGTTTTTTATCAGGTCATAG+GGG - chr8_1:10227864-10227883 Msa1177830:intron 35.0%
TCTAATTCGACGATGACTAA+TGG - chr8_1:10227969-10227988 Msa1177830:intron 35.0%
CTAATTCGACGATGACTAAT+GGG - chr8_1:10227970-10227989 Msa1177830:intron 35.0%
TAAGAATGGTGAAACAGAAG+TGG - chr8_1:10228037-10228056 Msa1177830:intron 35.0%
AAGAATGGTGAAACAGAAGT+GGG - chr8_1:10228038-10228057 Msa1177830:intron 35.0%
AGTTTCATATGCTGGTGATA+AGG - chr8_1:10228166-10228185 Msa1177830:intron 35.0%
ATATGCTGGTGATAAGGTTA+AGG - chr8_1:10228172-10228191 Msa1177830:intron 35.0%
TCAAGAAACTGTTGAGCATA+TGG + chr8_1:10228218-10228237 None:intergenic 35.0%
ACATCCTTATCTTAACATGG+TGG - chr8_1:10228241-10228260 Msa1177830:intron 35.0%
ACTTTAACTGCTACTCTAGT+AGG - chr8_1:10228281-10228300 Msa1177830:intron 35.0%
CAAATATGGAATGCAAAGTC+CGG - chr8_1:10228340-10228359 Msa1177830:intron 35.0%
!!! CCCCAAAAGCTTTTTTCATA+AGG + chr8_1:10228404-10228423 None:intergenic 35.0%
! GCGATATTTGGTTACCTTTT+TGG - chr8_1:10228442-10228461 Msa1177830:intron 35.0%
CATTTGTGAGAATGCCAAAA+AGG + chr8_1:10228459-10228478 None:intergenic 35.0%
!!! AGGGTTTTAAATAGTTGTCG+AGG - chr8_1:10228548-10228567 Msa1177830:CDS 35.0%
TAAATAGTTGTCGAGGTAAC+GGG - chr8_1:10228555-10228574 Msa1177830:CDS 35.0%
!!! CACGGTTTTAAATAAAGGTC+TGG + chr8_1:10228696-10228715 None:intergenic 35.0%
AAAGTGTACTTGGACTTGAT+AGG - chr8_1:10228907-10228926 Msa1177830:intron 35.0%
AAGTGTACTTGGACTTGATA+GGG - chr8_1:10228908-10228927 Msa1177830:intron 35.0%
CTAGACAAAATCTCGTCTAT+TGG - chr8_1:10228945-10228964 Msa1177830:intron 35.0%
TGTGATTGGTATAATGGCTT+TGG - chr8_1:10228974-10228993 Msa1177830:intron 35.0%
GTGCAATCTATTGTTACAGT+TGG - chr8_1:10229017-10229036 Msa1177830:intron 35.0%
CAATCTATTGTTACAGTTGG+CGG - chr8_1:10229020-10229039 Msa1177830:intron 35.0%
!! GTTTTCTACAATGTTGATGG+AGG - chr8_1:10229134-10229153 Msa1177830:intron 35.0%
GATAATGCACAATATGTGCA+AGG - chr8_1:10229361-10229380 Msa1177830:intron 35.0%
ACCCCACTTATTCATCTTTA+AGG - chr8_1:10229404-10229423 Msa1177830:intron 35.0%
TCAAAGATAGAATGCACCAA+AGG + chr8_1:10229509-10229528 None:intergenic 35.0%
TTCTCATTCGATCCTTCAAT+AGG + chr8_1:10229548-10229567 None:intergenic 35.0%
ATCTGTCTCTTCAAAGATTG+AGG + chr8_1:10229649-10229668 None:intergenic 35.0%
! TTTTCTAAGCCCTTCTCAAT+TGG - chr8_1:10229990-10230009 Msa1177830:intron 35.0%
ATCGTATCTCCAATTGAGAA+GGG + chr8_1:10230002-10230021 None:intergenic 35.0%
TATCGTATCTCCAATTGAGA+AGG + chr8_1:10230003-10230022 None:intergenic 35.0%
TGCAAATTAGTGATCGTTAC+CGG - chr8_1:10230044-10230063 Msa1177830:intron 35.0%
TAAAACAAATGGCGAATCCA+TGG + chr8_1:10230102-10230121 None:intergenic 35.0%
TACATTCAAGGGTAGAATCA+GGG - chr8_1:10230261-10230280 Msa1177830:intron 35.0%
TCAGGGTTAAAACATTTGAG+GGG - chr8_1:10230278-10230297 Msa1177830:intron 35.0%
!!! GAACTCATTTTTTTCTAGCC+AGG - chr8_1:10230609-10230628 Msa1177830:intron 35.0%
!!! TCATTTTTTTCTAGCCAGGT+AGG - chr8_1:10230613-10230632 Msa1177830:intron 35.0%
AAAAAAAAGGGGGAAAAGGA+AGG + chr8_1:10230639-10230658 None:intergenic 35.0%
!!! TTTTTTGAGGGATTCTGTAC+AGG - chr8_1:10230664-10230683 Msa1177830:intron 35.0%
GACTGACTACTTCTAAATTG+TGG + chr8_1:10230733-10230752 None:intergenic 35.0%
TTGAGTGTTCAGAACAGATA+TGG + chr8_1:10230817-10230836 None:intergenic 35.0%
TTCCAAGAAATAGTTTGAGC+AGG - chr8_1:10230990-10231009 Msa1177830:intron 35.0%
GTTCTATCTTACTAGATTGC+AGG - chr8_1:10231054-10231073 Msa1177830:intron 35.0%
TAAAAAACACCAAGGAGAAC+AGG + chr8_1:10231083-10231102 None:intergenic 35.0%
!!! TGTTTTTTTTCCCAGTCGAA+TGG + chr8_1:10231250-10231269 None:intergenic 35.0%
TACTATGTTATGCTCCTTCA+TGG - chr8_1:10231276-10231295 Msa1177830:intron 35.0%
GAATCAAAATCAGACCATGA+AGG + chr8_1:10231293-10231312 None:intergenic 35.0%
!! AAACTGAGGCCTTATTTGAT+TGG - chr8_1:10231355-10231374 Msa1177830:CDS 35.0%
TAAGGCAACAACTTATGCAT+CGG + chr8_1:10231501-10231520 None:intergenic 35.0%
TAAGATCAACAGCATAAGCA+AGG + chr8_1:10231542-10231561 None:intergenic 35.0%
CAAAGTTAGCATGGAAAAGA+GGG + chr8_1:10231612-10231631 None:intergenic 35.0%
ACAAAGTTAGCATGGAAAAG+AGG + chr8_1:10231613-10231632 None:intergenic 35.0%
! CTTTTCCATGCTAACTTTGT+AGG - chr8_1:10231613-10231632 Msa1177830:intron 35.0%
AATTGCCTACAAAGTTAGCA+TGG + chr8_1:10231621-10231640 None:intergenic 35.0%
!! AAGAGGGATTTTGGTAAGAA+TGG + chr8_1:10231672-10231691 None:intergenic 35.0%
! CTCAATTTGAAGAGGGATTT+TGG + chr8_1:10231681-10231700 None:intergenic 35.0%
CAAAATCCCTCTTCAAATTG+AGG - chr8_1:10231679-10231698 Msa1177830:intron 35.0%
! AAATATGCAGAACTGACTCT+TGG - chr8_1:10231815-10231834 Msa1177830:intron 35.0%
TTAATTCAGACTCAGATGAG+TGG + chr8_1:10231865-10231884 None:intergenic 35.0%
AGTGTGAAGCAAGCATAATA+TGG + chr8_1:10231895-10231914 None:intergenic 35.0%
! AAAGCATCACGTAGAAGTAA+TGG - chr8_1:10232226-10232245 Msa1177830:CDS 35.0%
! AAGAAGGTATAGAAGCATAG+CGG - chr8_1:10232264-10232283 Msa1177830:CDS 35.0%
! TGGGCCTTTTAGATTTCTAT+TGG - chr8_1:10232440-10232459 Msa1177830:CDS 35.0%
! GGGCCTTTTAGATTTCTATT+GGG - chr8_1:10232441-10232460 Msa1177830:CDS 35.0%
GGTCCCAATAGAAATCTAAA+AGG + chr8_1:10232447-10232466 None:intergenic 35.0%
GGAAAAGAACAATGACAACT+AGG + chr8_1:10232484-10232503 None:intergenic 35.0%
AGTCCAATAATTAGAGGTTG+AGG - chr8_1:10232537-10232556 Msa1177830:CDS 35.0%
GTCCAATAATTAGAGGTTGA+GGG - chr8_1:10232538-10232557 Msa1177830:CDS 35.0%
GGACCTAATTTCACCATATT+TGG - chr8_1:10232622-10232641 Msa1177830:CDS 35.0%
TAATGATTTGAACTGCTTGC+AGG + chr8_1:10232737-10232756 None:intergenic 35.0%
CTGACGTTAGAAAATTGCTT+TGG + chr8_1:10232900-10232919 None:intergenic 35.0%
! AGCAATTTTCTAACGTCAGT+TGG - chr8_1:10232901-10232920 Msa1177830:intron 35.0%
CTGTGTAGTCAGATATCATT+TGG - chr8_1:10232926-10232945 Msa1177830:intron 35.0%
!! ATTCGTCGTTTTCGTCTTCA+CGG - chr8_1:10227399-10227418 Msa1177830:three_prime_UTR 40.0%
GCAAGATTCAATGACCCATT+AGG + chr8_1:10227744-10227763 None:intergenic 40.0%
TGAGTCTGAGCAAACATCTT+AGG + chr8_1:10227831-10227850 None:intergenic 40.0%
! AATGCTGCATTTGAAACCCA+AGG - chr8_1:10227897-10227916 Msa1177830:intron 40.0%
! ATGCTGCATTTGAAACCCAA+GGG - chr8_1:10227898-10227917 Msa1177830:intron 40.0%
CCTAGGTGAATTAAACCCTT+GGG + chr8_1:10227916-10227935 None:intergenic 40.0%
CCAAGGGTTTAATTCACCTA+GGG - chr8_1:10227914-10227933 Msa1177830:intron 40.0%
ACAACACTGAAACATACCCT+AGG + chr8_1:10227933-10227952 None:intergenic 40.0%
GAGTTCCCGAATGTATTCAT+CGG - chr8_1:10227995-10228014 Msa1177830:intron 40.0%
AGTTCCCGAATGTATTCATC+GGG - chr8_1:10227996-10228015 Msa1177830:intron 40.0%
!! TTTCGGGTGATTTGGTTGAT+AGG - chr8_1:10228111-10228130 Msa1177830:intron 40.0%
!! TACATGGAAGAGTGTTGTTG+AGG - chr8_1:10228142-10228161 Msa1177830:intron 40.0%
! AAGGTTAAGGAAGGTTCTGA+TGG - chr8_1:10228185-10228204 Msa1177830:intron 40.0%
ACGACCACCATGTTAAGATA+AGG + chr8_1:10228248-10228267 None:intergenic 40.0%
TAACTGCTACTCTAGTAGGT+TGG - chr8_1:10228285-10228304 Msa1177830:intron 40.0%
TTTCCTTGAAGCAGAGAAAC+CGG + chr8_1:10228362-10228381 None:intergenic 40.0%
TGCTTCAAGGAAACTTGTCA+GGG - chr8_1:10228369-10228388 Msa1177830:intron 40.0%
!!! AAAAAGCTTTTGGGGTGCTA+TGG - chr8_1:10228409-10228428 Msa1177830:intron 40.0%
AGGTAACCAAATATCGCACT+GGG + chr8_1:10228439-10228458 None:intergenic 40.0%
AAGGTAACCAAATATCGCAC+TGG + chr8_1:10228440-10228459 None:intergenic 40.0%
TATTGCGAAGCTATAGCTGT+TGG + chr8_1:10228792-10228811 None:intergenic 40.0%
TTGTCGAGTCAAAGTGTACT+TGG - chr8_1:10228897-10228916 Msa1177830:intron 40.0%
CCAAATGAGCTAAGCTCATA+GGG + chr8_1:10229336-10229355 None:intergenic 40.0%
ACCAAATGAGCTAAGCTCAT+AGG + chr8_1:10229337-10229356 None:intergenic 40.0%
TGAGCTTAGCTCATTTGGTA+AGG - chr8_1:10229338-10229357 Msa1177830:intron 40.0%
GAGCTTAGCTCATTTGGTAA+GGG - chr8_1:10229339-10229358 Msa1177830:intron 40.0%
GTACTTGGCAATGTGTTTAG+CGG - chr8_1:10229954-10229973 Msa1177830:intron 40.0%
GTACATTCAAGGGTAGAATC+AGG - chr8_1:10230260-10230279 Msa1177830:intron 40.0%
TGAGAAATTGTGCAAACTGC+AGG - chr8_1:10230501-10230520 Msa1177830:intron 40.0%
CTTCAGCAAAACAGAGAAGT+AGG - chr8_1:10230705-10230724 Msa1177830:intron 40.0%
ATACACAACAGACATGCAGT+GGG + chr8_1:10230917-10230936 None:intergenic 40.0%
AATACACAACAGACATGCAG+TGG + chr8_1:10230918-10230937 None:intergenic 40.0%
! AGCCTGCTCAAACTATTTCT+TGG + chr8_1:10230995-10231014 None:intergenic 40.0%
ACAATGCATTACCATTCGAC+TGG - chr8_1:10231236-10231255 Msa1177830:intron 40.0%
CAATGCATTACCATTCGACT+GGG - chr8_1:10231237-10231256 Msa1177830:intron 40.0%
!! ACTTGCTGTTTCAGTCATCA+TGG - chr8_1:10231573-10231592 Msa1177830:intron 40.0%
GGTAAGAATGGCACGATAAT+CGG + chr8_1:10231660-10231679 None:intergenic 40.0%
TGGATACAACCTCAAGAACA+TGG - chr8_1:10231835-10231854 Msa1177830:intron 40.0%
TCTATACCTTCTTGGCTACT+TGG + chr8_1:10232257-10232276 None:intergenic 40.0%
GCTATGCTTCTATACCTTCT+TGG + chr8_1:10232265-10232284 None:intergenic 40.0%
CTCCCTCAACCTCTAATTAT+TGG + chr8_1:10232543-10232562 None:intergenic 40.0%
!! AAGAATCATGGTGTTGCTCT+TGG - chr8_1:10232756-10232775 Msa1177830:five_prime_UTR 40.0%
CCCAAGGGTTTAATTCACCT+AGG - chr8_1:10227913-10227932 Msa1177830:intron 45.0%
CCCTAGGTGAATTAAACCCT+TGG + chr8_1:10227917-10227936 None:intergenic 45.0%
CAGACCCGATGAATACATTC+GGG + chr8_1:10228003-10228022 None:intergenic 45.0%
CCAGACCCGATGAATACATT+CGG + chr8_1:10228004-10228023 None:intergenic 45.0%
CGAATGTATTCATCGGGTCT+GGG - chr8_1:10228002-10228021 Msa1177830:intron 45.0%
GTGAAACAGAAGTGGGTGTT+GGG - chr8_1:10228045-10228064 Msa1177830:intron 45.0%
ACTGGTGTGAGTGATGTGAA+GGG - chr8_1:10228068-10228087 Msa1177830:intron 45.0%
! TTCGGTTGTTTCGGGTGATT+TGG - chr8_1:10228103-10228122 Msa1177830:intron 45.0%
GTTGAGGCAGTTTCATATGC+TGG - chr8_1:10228158-10228177 Msa1177830:intron 45.0%
GCTGGTGATAAGGTTAAGGA+AGG - chr8_1:10228176-10228195 Msa1177830:intron 45.0%
TCTTAACATGGTGGTCGTTC+CGG - chr8_1:10228250-10228269 Msa1177830:intron 45.0%
! GCAGTTAAAGTACCACCAAC+CGG + chr8_1:10228272-10228291 None:intergenic 45.0%
! TCATCTTGCCGAGGATTTTG+AGG - chr8_1:10228309-10228328 Msa1177830:intron 45.0%
CTGCTTCAAGGAAACTTGTC+AGG - chr8_1:10228368-10228387 Msa1177830:intron 45.0%
GCTTCAAGGAAACTTGTCAG+GGG - chr8_1:10228370-10228389 Msa1177830:intron 45.0%
!! TGGTATAATGGCTTTGGCTG+AGG - chr8_1:10228980-10228999 Msa1177830:intron 45.0%
ATTGTTACAGTTGGCGGTGT+AGG - chr8_1:10229026-10229045 Msa1177830:intron 45.0%
CCCTATGAGCTTAGCTCATT+TGG - chr8_1:10229333-10229352 Msa1177830:intron 45.0%
! GATGAATAAGTGGGGTGTCT+GGG + chr8_1:10229400-10229419 None:intergenic 45.0%
! AGATGAATAAGTGGGGTGTC+TGG + chr8_1:10229401-10229420 None:intergenic 45.0%
GGTGAATTTCTCTAGCCACT+AGG - chr8_1:10229425-10229444 Msa1177830:intron 45.0%
!! TTTTGGGTCAAGTAGCCTAG+TGG + chr8_1:10229443-10229462 None:intergenic 45.0%
AGGATCGAATGAGAATGTGC+TGG - chr8_1:10229553-10229572 Msa1177830:intron 45.0%
CACATGTCTCAGTCACCAAT+TGG + chr8_1:10229747-10229766 None:intergenic 45.0%
TTAGTGTAAGACTCACGAGC+TGG + chr8_1:10229775-10229794 None:intergenic 45.0%
GAAGGGCTTAGAAAACTGCA+TGG + chr8_1:10229985-10230004 None:intergenic 45.0%
AAATTGTGCAAACTGCAGGC+TGG - chr8_1:10230505-10230524 Msa1177830:intron 45.0%
TGGATCGATAGAAGGTCAAG+TGG - chr8_1:10230525-10230544 Msa1177830:intron 45.0%
ATCGATAGAAGGTCAAGTGG+TGG - chr8_1:10230528-10230547 Msa1177830:intron 45.0%
! GAAGGTCAAGTGGTGGAAAT+TGG - chr8_1:10230535-10230554 Msa1177830:intron 45.0%
ACAATGACTGGGAACTTCTC+AGG + chr8_1:10230586-10230605 None:intergenic 45.0%
ATGAGTTCGGCACAATGACT+GGG + chr8_1:10230597-10230616 None:intergenic 45.0%
AATGAGTTCGGCACAATGAC+TGG + chr8_1:10230598-10230617 None:intergenic 45.0%
GTGAGGCATGAGAATACTCT+TGG + chr8_1:10230945-10230964 None:intergenic 45.0%
ATGCGTGACAAGAAACAGCA+GGG + chr8_1:10231788-10231807 None:intergenic 45.0%
AGTGGTGTACCATGTTCTTG+AGG + chr8_1:10231847-10231866 None:intergenic 45.0%
AAACGCCAACCTATTACCTC+CGG - chr8_1:10232013-10232032 Msa1177830:CDS 45.0%
ATGTTGCATCGCGAGTTTGA+GGG - chr8_1:10232395-10232414 Msa1177830:CDS 45.0%
!! AAAAAAAAAAAAAAAAAAAG+GGG + chr8_1:10230650-10230669 None:intergenic 5.0%
!! CAAAAAAAAAAAAAAAAAAA+GGG + chr8_1:10230651-10230670 None:intergenic 5.0%
!! TCAAAAAAAAAAAAAAAAAA+AGG + chr8_1:10230652-10230671 None:intergenic 5.0%
!!! TTTTTTTTTTTTTTTTTTTG+AGG - chr8_1:10230651-10230670 Msa1177830:intron 5.0%
!!! TTTTTTTTTTTTTTTTTTGA+GGG - chr8_1:10230652-10230671 Msa1177830:intron 5.0%
!!! TATTTTAAATTCATTTATTT+GGG - chr8_1:10231396-10231415 Msa1177830:CDS 5.0%
CCGAATGTATTCATCGGGTC+TGG - chr8_1:10228001-10228020 Msa1177830:intron 50.0%
ATGTATTCATCGGGTCTGGG+AGG - chr8_1:10228005-10228024 Msa1177830:intron 50.0%
TGTATTCATCGGGTCTGGGA+GGG - chr8_1:10228006-10228025 Msa1177830:intron 50.0%
GGAGGGGAAGGAAGTAAGAA+TGG - chr8_1:10228023-10228042 Msa1177830:intron 50.0%
GGTGAAACAGAAGTGGGTGT+TGG - chr8_1:10228044-10228063 Msa1177830:intron 50.0%
GACTGGTGTGAGTGATGTGA+AGG - chr8_1:10228067-10228086 Msa1177830:intron 50.0%
GTGTGAGTGATGTGAAGGGT+GGG - chr8_1:10228072-10228091 Msa1177830:intron 50.0%
TGTGAGTGATGTGAAGGGTG+GGG - chr8_1:10228073-10228092 Msa1177830:intron 50.0%
!! GGGTGGTGATTCGGTTGTTT+CGG - chr8_1:10228094-10228113 Msa1177830:intron 50.0%
!! GGTGGTGATTCGGTTGTTTC+GGG - chr8_1:10228095-10228114 Msa1177830:intron 50.0%
!! TAGGTTGGTTCATCTTGCCG+AGG - chr8_1:10228300-10228319 Msa1177830:intron 50.0%
AGTCCGGTTTCTCTGCTTCA+AGG - chr8_1:10228356-10228375 Msa1177830:intron 50.0%
GGAAGACCCAGTGCGATATT+TGG - chr8_1:10228430-10228449 Msa1177830:intron 50.0%
AATACCTTGCACCCACTTGG+AGG - chr8_1:10228808-10228827 Msa1177830:intron 50.0%
ATACCTTGCACCCACTTGGA+GGG - chr8_1:10228809-10228828 Msa1177830:intron 50.0%
TTTGCTGCCAGAGACGTACT+TGG - chr8_1:10229939-10229958 Msa1177830:intron 50.0%
CACATTGCCAAGTACGTCTC+TGG + chr8_1:10229949-10229968 None:intergenic 50.0%
! TGTTTTGCTGAAGCGACTGC+AGG + chr8_1:10230698-10230717 None:intergenic 50.0%
CTGTGAGGAAACTTCTCCAG+AGG - chr8_1:10231438-10231457 Msa1177830:CDS 50.0%
AATGGCACGATAATCGGCAC+GGG + chr8_1:10231654-10231673 None:intergenic 50.0%
GAATGGCACGATAATCGGCA+CGG + chr8_1:10231655-10231674 None:intergenic 50.0%
CATGCGTGACAAGAAACAGC+AGG + chr8_1:10231789-10231808 None:intergenic 50.0%
!! CTGCTGTTTCTTGTCACGCA+TGG - chr8_1:10231787-10231806 Msa1177830:intron 50.0%
ACTTTCTGACTAGCACACGC+CGG + chr8_1:10232035-10232054 None:intergenic 50.0%
CATGTTGCATCGCGAGTTTG+AGG - chr8_1:10232394-10232413 Msa1177830:CDS 50.0%
TGTTGCATCGCGAGTTTGAG+GGG - chr8_1:10232396-10232415 Msa1177830:CDS 50.0%
TTAGAGGTTGAGGGAGACCA+TGG - chr8_1:10232547-10232566 Msa1177830:CDS 50.0%
! GTGTTGCTCTTGGAAGCACA+TGG - chr8_1:10232766-10232785 Msa1177830:intron 50.0%
GTATTCATCGGGTCTGGGAG+GGG - chr8_1:10228007-10228026 Msa1177830:intron 55.0%
!! ACAGAAGTGGGTGTTGGGAC+TGG - chr8_1:10228050-10228069 Msa1177830:intron 55.0%
GGTGTGAGTGATGTGAAGGG+TGG - chr8_1:10228071-10228090 Msa1177830:intron 55.0%
GTGAGTGATGTGAAGGGTGG+GGG - chr8_1:10228074-10228093 Msa1177830:intron 55.0%
AACATGGTGGTCGTTCCGGT+TGG - chr8_1:10228254-10228273 Msa1177830:intron 55.0%
CGCAATACCTTGCACCCACT+TGG - chr8_1:10228805-10228824 Msa1177830:intron 55.0%
TACCTTGCACCCACTTGGAG+GGG - chr8_1:10228810-10228829 Msa1177830:intron 55.0%
ATCACTGCACCCCTCCAAGT+GGG + chr8_1:10228822-10228841 None:intergenic 55.0%
AATCACTGCACCCCTCCAAG+TGG + chr8_1:10228823-10228842 None:intergenic 55.0%
!! ATGGCTTTGGCTGAGGCTTG+TGG - chr8_1:10228987-10229006 Msa1177830:intron 55.0%
TTTGGCTGAGGCTTGTGGTG+TGG - chr8_1:10228992-10229011 Msa1177830:intron 55.0%
GTTACAGTTGGCGGTGTAGG+AGG - chr8_1:10229029-10229048 Msa1177830:intron 55.0%
CACAATATGTGCAAGGGCCG+AGG - chr8_1:10229368-10229387 Msa1177830:intron 55.0%
CTGCAGGCTGGATCGATAGA+AGG - chr8_1:10230517-10230536 Msa1177830:intron 55.0%
TGCAGGAGTCCTGTTCTCCT+TGG - chr8_1:10231071-10231090 Msa1177830:intron 55.0%
ACACGCCGGAGGTAATAGGT+TGG + chr8_1:10232021-10232040 None:intergenic 55.0%
TAGCACACGCCGGAGGTAAT+AGG + chr8_1:10232025-10232044 None:intergenic 55.0%
GCACTGCCAAGTAGCCAAGA+AGG - chr8_1:10232248-10232267 Msa1177830:CDS 55.0%
AGTGATGTGAAGGGTGGGGG+TGG - chr8_1:10228077-10228096 Msa1177830:intron 60.0%
GAAGGGTGGGGGTGGTGATT+CGG - chr8_1:10228085-10228104 Msa1177830:intron 60.0%
ATGGTGGTCGTTCCGGTTGG+TGG - chr8_1:10228257-10228276 Msa1177830:intron 60.0%
AGCCGATGCGACCTCAATCG+CGG - chr8_1:10228617-10228636 Msa1177830:CDS 60.0%
GACCGCGATTGAGGTCGCAT+CGG + chr8_1:10228622-10228641 None:intergenic 60.0%
CCACAATGCGACCGCGATTG+AGG + chr8_1:10228631-10228650 None:intergenic 60.0%
CCTCAATCGCGGTCGCATTG+TGG - chr8_1:10228628-10228647 Msa1177830:CDS 60.0%
GGGTGTCTGGGTTCGAACCT+CGG + chr8_1:10229388-10229407 None:intergenic 60.0%
GGGGAAAAGGAAGGCCTACC+TGG + chr8_1:10230630-10230649 None:intergenic 60.0%
TTCTGACTAGCACACGCCGG+AGG + chr8_1:10232032-10232051 None:intergenic 60.0%
TCATCGGGTCTGGGAGGGGA+AGG - chr8_1:10228011-10228030 Msa1177830:intron 65.0%
CACCCCTCCAAGTGGGTGCA+AGG + chr8_1:10228815-10228834 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 10227330 10233019 10227330 ID=Msa1177830;Name=Msa1177830
chr8_1 mRNA 10227330 10233019 10227330 ID=Msa1177830-mRNA-1;Parent=Msa1177830;Name=Msa1177830-mRNA-1;_AED=0.18;_eAED=0.18;_QI=162|1|1|1|0.83|0.71|7|216|550
chr8_1 exon 10227330 10227653 10227330 ID=Msa1177830-mRNA-1:exon:3562;Parent=Msa1177830-mRNA-1
chr8_1 exon 10228493 10228714 10228493 ID=Msa1177830-mRNA-1:exon:3561;Parent=Msa1177830-mRNA-1
chr8_1 exon 10229719 10229826 10229719 ID=Msa1177830-mRNA-1:exon:3560;Parent=Msa1177830-mRNA-1
chr8_1 exon 10230324 10230424 10230324 ID=Msa1177830-mRNA-1:exon:3559;Parent=Msa1177830-mRNA-1
chr8_1 exon 10231299 10231576 10231299 ID=Msa1177830-mRNA-1:exon:3558;Parent=Msa1177830-mRNA-1
chr8_1 exon 10231872 10232778 10231872 ID=Msa1177830-mRNA-1:exon:3557;Parent=Msa1177830-mRNA-1
chr8_1 exon 10232929 10233019 10232929 ID=Msa1177830-mRNA-1:exon:3556;Parent=Msa1177830-mRNA-1
chr8_1 five_prime_UTR 10232929 10233019 10232929 ID=Msa1177830-mRNA-1:five_prime_utr;Parent=Msa1177830-mRNA-1
chr8_1 five_prime_UTR 10232708 10232778 10232708 ID=Msa1177830-mRNA-1:five_prime_utr;Parent=Msa1177830-mRNA-1
chr8_1 CDS 10231872 10232707 10231872 ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1 CDS 10231299 10231576 10231299 ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1 CDS 10230324 10230424 10230324 ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1 CDS 10229719 10229826 10229719 ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1 CDS 10228493 10228714 10228493 ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1 CDS 10227546 10227653 10227546 ID=Msa1177830-mRNA-1:cds;Parent=Msa1177830-mRNA-1
chr8_1 three_prime_UTR 10227330 10227545 10227330 ID=Msa1177830-mRNA-1:three_prime_utr;Parent=Msa1177830-mRNA-1
Gene Sequence

>Msa1177830

ATGTCTGCTATTAGGTTTTCTCATGTAAAATCTCTTCATAGTTCAATCAAGGGTTTTTCCAATTTCAATGTCCAAAATGTTCAAAATTATCACTCTAACCCTAATGGGTCATTGAATCTTGCAAGAATTTCAATTTTTTGTACTGATTTATCGAGCCGTCGTTATTCAAAAAATGGGTCTAAGTCACCTAAGATGTTTGCTCAGACTCAGTTTAGAAATTTGGGTTTTTTATCAGGTCATAGGGGTTTCAAATTCAATGCTGCATTTGAAACCCAAGGGTTTAATTCACCTAGGGTATGTTTCAGTGTTGTTAATGTTCCTTTTGTTTCTAATTCGACGATGACTAATGGGTTGAGTTCCCGAATGTATTCATCGGGTCTGGGAGGGGAAGGAAGTAAGAATGGTGAAACAGAAGTGGGTGTTGGGACTGGTGTGAGTGATGTGAAGGGTGGGGGTGGTGATTCGGTTGTTTCGGGTGATTTGGTTGATAGGATGAAAGATACATGGAAGAGTGTTGTTGAGGCAGTTTCATATGCTGGTGATAAGGTTAAGGAAGGTTCTGATGGTGTTACTCCATATGCTCAACAGTTTCTTGATTCACATCCTTATCTTAACATGGTGGTCGTTCCGGTTGGTGGTACTTTAACTGCTACTCTAGTAGGTTGGTTCATCTTGCCGAGGATTTTGAGGAAATTTCACAAATATGGAATGCAAAGTCCGGTTTCTCTGCTTCAAGGAAACTTGTCAGGGGAGCCAGTTCCTTATGAAAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTGGTTACCTTTTTGGCATTCTCACAAATTGCTGTAATGGTAGCTCCAACAGCTATAGCTTCGCAATACCTTGCACCCACTTGGAGGGGTGCAGTGATTCTTTCTTTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACTTTGTCGAGTCAAAGTGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATCTCGTCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTTACAGTTGGCGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGACGTACTTGGCAATGTGTTTAGCGGTTTATCCATGCAGTTTTCTAAGCCCTTCTCAATTGGAGATACGATAAAAGCTGGATCGATAGAAGGTCAAGTGGTGGAAATTGGTCTTACTAGCACATCATTGCTGAGTCCTGAGAAGTTCCCAGTCATTGTGCCGAACTCATTTTTTTCTAGCCAGGCAATTGTGAACAAGTCCCGTGCCGATTATCGTGCCATTCTTACCAAAATCCCTCTTCAAATTGAGGATTTAAGTAAGATTCCCCATATATCGAATGATATTAAAGGCATGTTAACATCAAATGCAAAAGTTTTCTTAGGAAAAGATGTTCCCTGCTGTTTCTTGTCACGCATGGAAAGTAAATATGCAGAACTGACTCTTGGATACAACCTCAAGAACATGCGCAAAGATGAGTTCTACTCTGCAGAACAAGATATTCTCCTGCAAGCAGTTCAAATCATTAAGAATCATGGTGTTGCTCTTGGAAGCACATGGAATGACACTAAGTAA

Protein sequence

>Msa1177830

MSAIRFSHVKSLHSSIKGFSNFNVQNVQNYHSNPNGSLNLARISIFCTDLSSRRYSKNGSKSPKMFAQTQFRNLGFLSGHRGFKFNAAFETQGFNSPRVCFSVVNVPFVSNSTMTNGLSSRMYSSGLGGEGSKNGETEVGVGTGVSDVKGGGGDSVVSGDLVDRMKDTWKSVVEAVSYAGDKVKEGSDGVTPYAQQFLDSHPYLNMVVVPVGGTLTATLVGWFILPRILRKFHKYGMQSPVSLLQGNLSGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAVMVAPTAIASQYLAPTWRGAVILSFVWFLHRWKTNVFARTLSSQSVLGLDREKMLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEIGLTSTSLLSPEKFPVIVPNSFFSSQAIVNKSRADYRAILTKIPLQIEDLSKIPHISNDIKGMLTSNAKVFLGKDVPCCFLSRMESKYAELTLGYNLKNMRKDEFYSAEQDILLQAVQIIKNHGVALGSTWNDTK*