AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896210


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896210 MtrunA17_Chr6g0480631 98.798 499 6 0 1 499 1 499 0.0 1023
Msa0896210 MtrunA17_Chr3g0109901 74.560 511 115 4 1 499 1 508 0.0 785
Msa0896210 MtrunA17_Chr8g0375301 71.674 466 123 2 17 473 14 479 0.0 702
Msa0896210 MtrunA17_Chr5g0433931 69.438 409 117 2 99 499 1 409 0.0 598
Msa0896210 MtrunA17_Chr5g0433921 79.000 100 18 1 1 100 1 97 7.86e-50 166
Msa0896210 MtrunA17_Chr7g0222381 25.895 363 239 11 84 436 157 499 2.77e-20 94.0
Msa0896210 MtrunA17_Chr5g0432951 76.923 39 9 0 255 293 15 53 3.34e-15 71.2
Msa0896210 MtrunA17_Chr5g0432961 52.174 69 33 0 375 443 13 81 2.06e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896210 AT2G02010.2 77.980 495 100 2 1 495 53 538 0.0 812
Msa0896210 AT2G02010.1 77.980 495 100 2 1 495 1 486 0.0 812
Msa0896210 AT3G17760.2 78.528 489 98 3 14 499 10 494 0.0 796
Msa0896210 AT3G17760.1 78.528 489 98 3 14 499 10 494 0.0 796
Msa0896210 AT5G17330.1 76.424 509 103 4 1 499 1 502 0.0 795
Msa0896210 AT1G65960.2 75.848 501 112 3 1 499 1 494 0.0 785
Msa0896210 AT2G02000.1 75.101 494 114 2 1 494 1 485 0.0 783
Msa0896210 AT1G65960.1 75.272 368 86 2 134 499 1 365 0.0 573
Msa0896210 AT1G65960.3 75.272 368 86 2 134 499 1 365 0.0 573
Msa0896210 AT1G65960.4 75.272 368 86 2 134 499 1 365 0.0 573
Msa0896210 AT3G17720.1 74.691 162 38 1 94 255 27 185 3.84e-83 256
Msa0896210 AT1G27980.1 24.586 362 241 11 84 434 160 500 5.06e-17 84.3

Find 141 sgRNAs with CRISPR-Local

Find 291 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTGTGTTGCAGCCATTT+TGG 0.165886 6_1:-85968446 Msa0896210:CDS
GCATACATTTGATGTGTTTA+AGG 0.167743 6_1:-85967097 Msa0896210:three_prime_UTR
TTCCATTGTTGCTTTATCTA+TGG 0.221404 6_1:-85967070 Msa0896210:three_prime_UTR
TTCTCTACCCTGATCTTCTA+TGG 0.227683 6_1:-85968294 Msa0896210:CDS
TTCATTCATTCATATAAATA+TGG 0.237410 6_1:+85967015 None:intergenic
AGTTGAAGAAATCACCATTT+TGG 0.255929 6_1:+85971122 None:intergenic
ATCTGATATGCTGCATCTTT+TGG 0.270173 6_1:+85970896 None:intergenic
CTGGTATTGGTTGGGTTGTT+TGG 0.283011 6_1:-85968207 Msa0896210:CDS
CTCAATACTACCAATTTATA+CGG 0.284916 6_1:-85967839 Msa0896210:CDS
ACGTGGGTAAATAGTCATTT+TGG 0.292172 6_1:+85971304 None:intergenic
TCCTGTCACTACTGAGCTTC+AGG 0.325572 6_1:-85970738 Msa0896210:intron
CCGTCCTCCGAGTGGTGATT+AGG 0.325686 6_1:-85967405 Msa0896210:CDS
CGAAGCCTAGCCGTATAAAT+TGG 0.327648 6_1:+85967829 None:intergenic
TGTGCAAGTCATGGGATAAA+AGG 0.332953 6_1:-85971793 Msa0896210:five_prime_UTR
GGACTCAAGCTGAGATTCTT+AGG 0.336941 6_1:-85967225 Msa0896210:CDS
TTCTAGATACGTGCGTGAAC+AGG 0.356943 6_1:-85971052 Msa0896210:CDS
GATAAGCCTAACATAGTTAC+TGG 0.359552 6_1:-85969439 Msa0896210:CDS
CGGAAATCCCATAGAAGATC+AGG 0.359620 6_1:+85968286 None:intergenic
GGTCTTGTTTACCCTGGTAT+TGG 0.363471 6_1:-85968220 Msa0896210:CDS
AAGCTGAGATTCTTAGGTAT+TGG 0.366104 6_1:-85967219 Msa0896210:CDS
TAACAAGAACTATGTTGATA+TGG 0.366188 6_1:-85970768 Msa0896210:CDS
GAGACATAAAGCTGACTTGC+CGG 0.370405 6_1:-85968185 Msa0896210:CDS
CTCGCAGCATCCACATGAAT+TGG 0.372368 6_1:+85968337 None:intergenic
AGTCAGCGTTGAACCCAAAA+TGG 0.376738 6_1:+85968432 None:intergenic
AATGATGAGTTGATGTTAGA+TGG 0.378531 6_1:-85970869 Msa0896210:CDS
GTTTGTGGGTGAAGTAGATT+TGG 0.381006 6_1:+85971759 None:intergenic
CATCTATTCAATGCTCCTAT+TGG 0.381425 6_1:-85969580 Msa0896210:CDS
TGGCTTCATTTGTTACTACT+TGG 0.383718 6_1:-85970829 Msa0896210:CDS
CGTCCTCCGAGTGGTGATTA+GGG 0.385244 6_1:-85967404 Msa0896210:CDS
GCAGTTTCCTCTTCACCAAT+AGG 0.385794 6_1:+85969565 None:intergenic
CAGAACTCATCCAACCAAAA+TGG 0.395608 6_1:-85971136 Msa0896210:exon
ACCATTTCAACAGCTTTCAA+TGG 0.408300 6_1:+85968481 None:intergenic
AATATGCTACACAGGTTTGT+TGG 0.409355 6_1:-85968576 Msa0896210:intron
ATATGCTACACAGGTTTGTT+GGG 0.411704 6_1:-85968575 Msa0896210:intron
CAAGCTACATTATGTGTCAT+AGG 0.414559 6_1:+85971475 None:intergenic
CGTGTGATCACTTATTCTTA+AGG 0.417210 6_1:-85971284 Msa0896210:five_prime_UTR
GAAGTTAAGAAAGATATTAC+AGG 0.423340 6_1:-85967247 Msa0896210:CDS
TTGTTTACCCTGGTATTGGT+TGG 0.425703 6_1:-85968216 Msa0896210:CDS
AACGCTGACTGGAGAGTTTG+AGG 0.427297 6_1:-85968419 Msa0896210:CDS
GTCTCTACAACTATTTATAG+AGG 0.430459 6_1:-85971623 Msa0896210:five_prime_UTR
TGTTTACCCTGGTATTGGTT+GGG 0.431991 6_1:-85968215 Msa0896210:CDS
TATTGGAAGAAGCTTGTTGA+TGG 0.434589 6_1:-85967202 Msa0896210:CDS
AAGGAAGGAATTGAGAAAAC+AGG 0.440850 6_1:-85967586 Msa0896210:CDS
TTCATTTGTTACTACTTGGA+TGG 0.447228 6_1:-85970825 Msa0896210:CDS
ATGATGTTGATCATGTTTCA+AGG 0.449196 6_1:+85971733 None:intergenic
GTACTTTGAGGTTGAGCTAA+AGG 0.449977 6_1:-85968539 Msa0896210:CDS
TGGAAAACCAAGGCTTAACT+TGG 0.451331 6_1:-85970849 Msa0896210:CDS
TTAGCTCCAGTAACTATGTT+AGG 0.451511 6_1:+85969433 None:intergenic
GGAGGATTTCAGCTGTAGCT+TGG 0.457484 6_1:-85967383 Msa0896210:CDS
GAGAAATTCAATGTGAAAGT+TGG 0.460930 6_1:+85968121 None:intergenic
TCTCTACCCTGATCTTCTAT+GGG 0.463816 6_1:-85968293 Msa0896210:CDS
ATGGGATTTCCGTTTGCCAT+TGG 0.465556 6_1:-85968275 Msa0896210:CDS
CTTGTTGATGGCAAGAGAGT+TGG 0.470062 6_1:-85967190 Msa0896210:CDS
AATGAAGCCAAGTTAAGCCT+TGG 0.475959 6_1:+85970842 None:intergenic
CATAATTGCTAGGTTTATTG+AGG 0.476798 6_1:+85971533 None:intergenic
AAAATTTGCCAGGTACTTTG+AGG 0.476874 6_1:-85968551 Msa0896210:CDS
AAAATACGGATGGATAGTTC+CGG 0.478907 6_1:-85967461 Msa0896210:CDS
GCAGACCATCTGAGAAAATA+CGG 0.484458 6_1:-85967475 Msa0896210:CDS
CAAGAGAGTTGGAGCATGCT+AGG 0.485182 6_1:-85967179 Msa0896210:exon
GCAGTAGGTGTTGGAACAGT+AGG 0.487341 6_1:-85969544 Msa0896210:CDS
TCCATTGAAAGCTGTTGAAA+TGG 0.494508 6_1:-85968482 Msa0896210:CDS
AAAGCCACTCACAACAATCA+AGG 0.494924 6_1:+85967128 None:intergenic
ATTTATACGGCTAGGCTTCG+AGG 0.499173 6_1:-85967826 Msa0896210:intron
AAAATTGTCTCCAAGGACAT+AGG 0.500052 6_1:-85967556 Msa0896210:CDS
CGAATGTGCAACGCTATGTT+GGG 0.500074 6_1:+85971575 None:intergenic
ATGTTTCAAGGATTGTTTGT+GGG 0.500425 6_1:+85971745 None:intergenic
CAAACAACCCAACCAATACC+AGG 0.505672 6_1:+85968208 None:intergenic
TGCGTCTGCGGGCATTGTGT+AGG 0.507441 6_1:+85967438 None:intergenic
GAAATAACATGTGCAAGTCA+TGG 0.510606 6_1:-85971802 None:intergenic
ACGAATGTGCAACGCTATGT+TGG 0.513816 6_1:+85971574 None:intergenic
AAGGTTTAAAATTGTCTCCA+AGG 0.518110 6_1:-85967563 Msa0896210:CDS
CAATGCTCCTATTGGTGAAG+AGG 0.522077 6_1:-85969572 Msa0896210:CDS
ACTGATCTTTGTGAAGATAG+AGG 0.525765 6_1:+85971222 None:intergenic
CTCCATAGATAAAGCAACAA+TGG 0.526759 6_1:+85967068 None:intergenic
AAGTGGCACACCTATGTCCT+TGG 0.530991 6_1:+85967546 None:intergenic
TGAGTGTGATAAGCTTATCA+TGG 0.535116 6_1:-85970798 Msa0896210:CDS
AGAAGATCAGGGTAGAGAAA+CGG 0.536404 6_1:+85968298 None:intergenic
GAGGAAACTGCAGTAGGTGT+TGG 0.536508 6_1:-85969553 Msa0896210:CDS
CATGTTTCAAGGATTGTTTG+TGG 0.542523 6_1:+85971744 None:intergenic
AAATGTGATGGAAAATTGCT+TGG 0.550366 6_1:-85967626 Msa0896210:CDS
ACTAAGAAGAACAAGGAGAC+AGG 0.550901 6_1:-85968370 Msa0896210:CDS
ACCTGAAGCTCAGTAGTGAC+AGG 0.552304 6_1:+85970737 None:intergenic
AATGTTAGCGGTCACAAGTA+CGG 0.552630 6_1:-85968241 Msa0896210:CDS
AAATAACATGTGCAAGTCAT+GGG 0.553359 6_1:-85971801 None:intergenic
TTCAAAAGATGCTCATGTTG+CGG 0.558105 6_1:-85967293 Msa0896210:CDS
CACAGAGGATTACTATGTGA+TGG 0.560082 6_1:-85968506 Msa0896210:CDS
TAGCTCAACCTCAAAGTACC+TGG 0.560216 6_1:+85968543 None:intergenic
AGAAGAACAAGGAGACAGGA+TGG 0.561254 6_1:-85968366 Msa0896210:CDS
GTTCATAGATGCATGGACAT+TGG 0.563250 6_1:+85967037 None:intergenic
AAACCCTTGATTGTTGTGAG+TGG 0.565159 6_1:-85967132 Msa0896210:three_prime_UTR
GTGAAAAGTATCAATGTTAG+CGG 0.565895 6_1:-85968253 Msa0896210:CDS
AGTTGTATGACATAATTGCT+AGG 0.566470 6_1:+85971523 None:intergenic
TCTGCGGGCATTGTGTAGGC+CGG 0.569917 6_1:+85967442 None:intergenic
TTCACATTGAATTTCTCCAA+AGG 0.571801 6_1:-85968115 Msa0896210:intron
CAGTAGGTGTTGGAACAGTA+GGG 0.575031 6_1:-85969543 Msa0896210:CDS
TCAGAGGCGATAATGTTGGC+TGG 0.580652 6_1:-85969517 Msa0896210:CDS
GTCATCAGAGGCGATAATGT+TGG 0.582128 6_1:-85969521 Msa0896210:CDS
CAAAATGGCTGCAACACAGA+TGG 0.582491 6_1:+85968447 None:intergenic
ACTATGTTAGGCTTATCGTA+TGG 0.583233 6_1:+85969445 None:intergenic
GAAGAACAAGGAGACAGGAT+GGG 0.586417 6_1:-85968365 Msa0896210:CDS
GTTGCACATTCGTCAAGAAG+TGG 0.586479 6_1:-85971564 Msa0896210:five_prime_UTR
GGCGAACACAAGAATTCTGA+AGG 0.590261 6_1:-85967605 Msa0896210:CDS
AACACAAGAATTCTGAAGGA+AGG 0.596220 6_1:-85967601 Msa0896210:CDS
AAATATGGTTCATAGATGCA+TGG 0.597106 6_1:+85967030 None:intergenic
CCTAATCACCACTCGGAGGA+CGG 0.599220 6_1:+85967405 None:intergenic
AAGCCACTCACAACAATCAA+GGG 0.602897 6_1:+85967129 None:intergenic
ACCATCTGAGAAAATACGGA+TGG 0.603176 6_1:-85967471 Msa0896210:CDS
AGTTACTGGAGCTAATGTGC+AGG 0.605359 6_1:-85969425 Msa0896210:intron
ATGATAAGCTTATCACACTC+AGG 0.609818 6_1:+85970800 None:intergenic
TCAACTGTCACACATCCAGA+TGG 0.610258 6_1:-85971105 Msa0896210:CDS
GATCACTTATTCTTAAGGAG+TGG 0.615220 6_1:-85971279 Msa0896210:five_prime_UTR
TTCAGAGAGAATGCAACAAG+TGG 0.617273 6_1:+85967529 None:intergenic
AAGGAATTGAGAAAACAGGA+AGG 0.618569 6_1:-85967582 Msa0896210:CDS
TTGCACATTCGTCAAGAAGT+GGG 0.620054 6_1:-85971563 Msa0896210:five_prime_UTR
TCTTTCATAAAATCAAGTAG+TGG 0.621670 6_1:-85971246 Msa0896210:five_prime_UTR
TACTACCAATTTATACGGCT+AGG 0.622133 6_1:-85967834 Msa0896210:CDS
GGAAATCCCATAGAAGATCA+GGG 0.625993 6_1:+85968287 None:intergenic
CATGTGGATGCTGCGAGCGG+TGG 0.629625 6_1:-85968331 Msa0896210:CDS
ATGGGATACTCCAATTCATG+TGG 0.632127 6_1:-85968347 Msa0896210:CDS
TTATAGAGGACTAATAATGT+CGG 0.635631 6_1:-85971609 Msa0896210:five_prime_UTR
AAGTACGGTCTTGTTTACCC+TGG 0.636562 6_1:-85968226 Msa0896210:CDS
GGTGAAGAGGAAACTGCAGT+AGG 0.652830 6_1:-85969559 Msa0896210:CDS
AAAACTGTTGTCGATCGATG+AGG 0.657169 6_1:+85971432 None:intergenic
AATCCTCCCTAATCACCACT+CGG 0.661532 6_1:+85967398 None:intergenic
TAAGAATAAGTGATCACACG+TGG 0.669996 6_1:+85971287 None:intergenic
CCTCCGAGTGGTGATTAGGG+AGG 0.671048 6_1:-85967401 Msa0896210:CDS
CAGACTAAGAGAAAAGCAGA+AGG 0.677769 6_1:-85969472 Msa0896210:CDS
GTAACAGCGAGGTGTAGAGT+CGG 0.678953 6_1:-85971330 Msa0896210:five_prime_UTR
GCTTCTTACTAAGAAGAACA+AGG 0.681561 6_1:-85968377 Msa0896210:CDS
GTGCTATTATATTCACACAC+CGG 0.687463 6_1:+85969602 None:intergenic
AAGTTAAGAAAGATATTACA+GGG 0.689885 6_1:-85967246 Msa0896210:CDS
TGATGTTAGATGGAAAACCA+AGG 0.691803 6_1:-85970859 Msa0896210:CDS
TGGAACAGTAGGGTCATCAG+AGG 0.694928 6_1:-85969533 Msa0896210:CDS
ATTCATGTGGATGCTGCGAG+CGG 0.696037 6_1:-85968334 Msa0896210:CDS
AAACAACCCAACCAATACCA+GGG 0.700278 6_1:+85968209 None:intergenic
CAAAGATCATTGTAACAGCG+AGG 0.709268 6_1:-85971341 Msa0896210:five_prime_UTR
AAGAATAAGTGATCACACGT+GGG 0.710986 6_1:+85971288 None:intergenic
TATCGCGAGTGAGACAAGTG+AGG 0.713496 6_1:-85967269 Msa0896210:CDS
CCTCCCTAATCACCACTCGG+AGG 0.723923 6_1:+85967401 None:intergenic
TCATAAACTAATCCACACTG+AGG 0.756505 6_1:-85971714 Msa0896210:five_prime_UTR
AAAGGAAGTGAAACTCACAG+AGG 0.773932 6_1:-85968521 Msa0896210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTGTTTTTATAATAATAT+CGG - chr6_1:85971033-85971052 Msa0896210:intron 10.0%
!! AACTTCAAAAATTAACTATT+AGG + chr6_1:85968538-85968557 None:intergenic 15.0%
!!! TCAAAGTCTAATTTTTTAAT+TGG + chr6_1:85968615-85968634 None:intergenic 15.0%
!!! TTATGAGTATATTTCTTTTT+AGG + chr6_1:85970824-85970843 None:intergenic 15.0%
!! TTCATTCATTCATATAAATA+TGG + chr6_1:85971742-85971761 None:intergenic 15.0%
!!! AATGTTTTAGCAGTAAATTT+TGG - chr6_1:85967109-85967128 Msa0896210:three_prime_UTR 20.0%
!!! GATTTTATGAAAGAAAAAAG+AGG + chr6_1:85967502-85967521 None:intergenic 20.0%
!!! AGTGTTTTTTTAAGGAAAAA+AGG + chr6_1:85967743-85967762 None:intergenic 20.0%
!!! ATATGTTTATGTGTTGATAT+AGG - chr6_1:85967811-85967830 Msa0896210:intron 20.0%
!!! TTGATCAAGATTTTGAATTA+TGG - chr6_1:85968062-85968081 Msa0896210:intron 20.0%
!! ACACTATATTGAAACTATAA+AGG - chr6_1:85968413-85968432 Msa0896210:CDS 20.0%
!! AATTATTATTGCACAGTAAA+AGG - chr6_1:85968761-85968780 Msa0896210:intron 20.0%
!! ATTATTATTGCACAGTAAAA+GGG - chr6_1:85968762-85968781 Msa0896210:intron 20.0%
!!! GGGAAAATATCATTTTTTAA+TGG - chr6_1:85968907-85968926 Msa0896210:intron 20.0%
!!! TTGTAAGTATCAAATTTTGA+GGG + chr6_1:85968940-85968959 None:intergenic 20.0%
!! TATAACAAATGTTGAAAATG+AGG - chr6_1:85969755-85969774 Msa0896210:intron 20.0%
!! TCAACTAAATATATTACCTT+TGG + chr6_1:85970658-85970677 None:intergenic 20.0%
!! CAATTCAATTCTTAAGTATA+TGG - chr6_1:85970744-85970763 Msa0896210:CDS 20.0%
!! TCATAAATCATTGTAATGTT+CGG - chr6_1:85970838-85970857 Msa0896210:CDS 20.0%
!! AAGTTAAGAAAGATATTACA+GGG - chr6_1:85971508-85971527 Msa0896210:five_prime_UTR 20.0%
! CTACTGTTTGAAGAAAAATT+TGG + chr6_1:85967083-85967102 None:intergenic 25.0%
! TTATAGAGGACTAATAATGT+CGG - chr6_1:85967145-85967164 Msa0896210:three_prime_UTR 25.0%
! TCTTTCATAAAATCAAGTAG+TGG - chr6_1:85967508-85967527 Msa0896210:CDS 25.0%
! TAACAAGAACTATGTTGATA+TGG - chr6_1:85967986-85968005 Msa0896210:intron 25.0%
!! GGATCAAATTTTAAACTAAG+AGG - chr6_1:85968434-85968453 Msa0896210:CDS 25.0%
! ATCAATTCAGTTCTTGAATA+GGG - chr6_1:85968479-85968498 Msa0896210:CDS 25.0%
!!! GATCAAGACTTTTAAAGAAA+AGG + chr6_1:85968675-85968694 None:intergenic 25.0%
! CATAAGTGTACTTATTTATC+TGG + chr6_1:85968720-85968739 None:intergenic 25.0%
! CAGATAAATAAGTACACTTA+TGG - chr6_1:85968718-85968737 Msa0896210:intron 25.0%
!!! AAGTTGCTTTTTTGAAGAAA+GGG - chr6_1:85968887-85968906 Msa0896210:intron 25.0%
!! GTTGTAAGTATCAAATTTTG+AGG + chr6_1:85968941-85968960 None:intergenic 25.0%
!! AACTTTAGATCTTTTGTGTT+TGG - chr6_1:85968961-85968980 Msa0896210:intron 25.0%
! CTGTTACAATTGAAATATCT+TGG - chr6_1:85969034-85969053 Msa0896210:intron 25.0%
!! TACATCTAAAATCATGTTGA+GGG + chr6_1:85969479-85969498 None:intergenic 25.0%
! GATAAAACATATTGTTCGTT+CGG - chr6_1:85969547-85969566 Msa0896210:CDS 25.0%
! TATATTACATAATACCAGAG+AGG + chr6_1:85969616-85969635 None:intergenic 25.0%
! GTATTATGTAATATAGTAGC+AGG - chr6_1:85969621-85969640 Msa0896210:intron 25.0%
! TATATGTCAAAATGAAGATG+AGG + chr6_1:85969739-85969758 None:intergenic 25.0%
!! ATTTTGTATTCTACCATACA+AGG + chr6_1:85969848-85969867 None:intergenic 25.0%
! AAACTGTTTGAGAAAACTTA+CGG - chr6_1:85969976-85969995 Msa0896210:intron 25.0%
!! TCATGACTTGTAACTTATAT+TGG - chr6_1:85970038-85970057 Msa0896210:intron 25.0%
!! GTTTTTCACATCAATTATCT+TGG - chr6_1:85970600-85970619 Msa0896210:intron 25.0%
! CAATGTATGACAAAATTCAA+AGG + chr6_1:85970687-85970706 None:intergenic 25.0%
!! CTTTGAATTTTGTCATACAT+TGG - chr6_1:85970685-85970704 Msa0896210:intron 25.0%
! AAGAAATACAAAGCAACATT+GGG + chr6_1:85970870-85970889 None:intergenic 25.0%
! AAAGAAATACAAAGCAACAT+TGG + chr6_1:85970871-85970890 None:intergenic 25.0%
! CTCAATACTACCAATTTATA+CGG - chr6_1:85970915-85970934 Msa0896210:CDS 25.0%
! TTTCTCGACTAATGAAAATA+AGG - chr6_1:85970996-85971015 Msa0896210:intron 25.0%
!!! TGTTATTTTTCTTGCTCTAA+GGG - chr6_1:85971099-85971118 Msa0896210:CDS 25.0%
!! TCTTTTGAATTGATAGAACT+TGG + chr6_1:85971450-85971469 None:intergenic 25.0%
! GAAGTTAAGAAAGATATTAC+AGG - chr6_1:85971507-85971526 Msa0896210:five_prime_UTR 25.0%
ATGTTTCAAGGATTGTTTGT+GGG + chr6_1:85967012-85967031 None:intergenic 30.0%
ATGATGTTGATCATGTTTCA+AGG + chr6_1:85967024-85967043 None:intergenic 30.0%
CTGTTTGAAGAAAAATTTGG+TGG + chr6_1:85967080-85967099 None:intergenic 30.0%
GTCTCTACAACTATTTATAG+AGG - chr6_1:85967131-85967150 Msa0896210:three_prime_UTR 30.0%
CATAATTGCTAGGTTTATTG+AGG + chr6_1:85967224-85967243 None:intergenic 30.0%
AGTTGTATGACATAATTGCT+AGG + chr6_1:85967234-85967253 None:intergenic 30.0%
! AGTTGAAGAAATCACCATTT+TGG + chr6_1:85967635-85967654 None:intergenic 30.0%
!!! GTGTGTGAAGTGTTTTTTTA+AGG + chr6_1:85967751-85967770 None:intergenic 30.0%
!!! ACACACACTTAGTTTTTTGT+TGG - chr6_1:85967765-85967784 Msa0896210:intron 30.0%
! TCTTTTGGTATAGAATTCTC+TGG + chr6_1:85967846-85967865 None:intergenic 30.0%
!! AATGATGAGTTGATGTTAGA+TGG - chr6_1:85967885-85967904 Msa0896210:intron 30.0%
! TTCATTTGTTACTACTTGGA+TGG - chr6_1:85967929-85967948 Msa0896210:intron 30.0%
AATAAGACTAAGTGCATGTT+TGG - chr6_1:85968130-85968149 Msa0896210:CDS 30.0%
! ATTTTGCAAAAGCTACATCA+GGG + chr6_1:85968191-85968210 None:intergenic 30.0%
! ATGTAGCTTTTGCAAAATCA+GGG - chr6_1:85968193-85968212 Msa0896210:CDS 30.0%
CTATTCAAGAACTGAATTGA+TGG + chr6_1:85968480-85968499 None:intergenic 30.0%
CATCAATTCAGTTCTTGAAT+AGG - chr6_1:85968478-85968497 Msa0896210:CDS 30.0%
! ATGGATGAGAGTATAGTATA+GGG - chr6_1:85968511-85968530 Msa0896210:CDS 30.0%
AGTGATTAAATTGACGAGAT+AGG - chr6_1:85968559-85968578 Msa0896210:CDS 30.0%
GTGATTAAATTGACGAGATA+GGG - chr6_1:85968560-85968579 Msa0896210:CDS 30.0%
!! TAGACTTTGAAACAACCTAA+TGG - chr6_1:85968625-85968644 Msa0896210:intron 30.0%
CTAATGGTATAGCTCAAATT+GGG - chr6_1:85968641-85968660 Msa0896210:intron 30.0%
TAATGGTATAGCTCAAATTG+GGG - chr6_1:85968642-85968661 Msa0896210:intron 30.0%
!! TTGATCTTTGAAGCTTTGTT+TGG - chr6_1:85968689-85968708 Msa0896210:intron 30.0%
!!! CAAGTTGCTTTTTTGAAGAA+AGG - chr6_1:85968886-85968905 Msa0896210:intron 30.0%
! TTTAGATCTTTTGTGTTTGG+TGG - chr6_1:85968964-85968983 Msa0896210:intron 30.0%
! TTGGTGGTTAGATGAAAATT+TGG - chr6_1:85968980-85968999 Msa0896210:intron 30.0%
!! TCAGTACTTTCAAGTTTCAA+TGG + chr6_1:85969095-85969114 None:intergenic 30.0%
!! GTAGTTCTGTATTTTCTTAG+AGG - chr6_1:85969440-85969459 Msa0896210:CDS 30.0%
! GTACATCTAAAATCATGTTG+AGG + chr6_1:85969480-85969499 None:intergenic 30.0%
! ACATTGATACTTTTCACCAA+TGG + chr6_1:85970498-85970517 None:intergenic 30.0%
!! GTGAAAAGTATCAATGTTAG+CGG - chr6_1:85970501-85970520 Msa0896210:intron 30.0%
ATGTGAAAAACAAGATCATC+CGG + chr6_1:85970591-85970610 None:intergenic 30.0%
GAGAAATTCAATGTGAAAGT+TGG + chr6_1:85970636-85970655 None:intergenic 30.0%
TTCACATTGAATTTCTCCAA+AGG - chr6_1:85970639-85970658 Msa0896210:intron 30.0%
! TGCTTTGTATTTCTTTTGAC+AGG - chr6_1:85970875-85970894 Msa0896210:CDS 30.0%
CTTAGAGCAAGAAAAATAAC+AGG + chr6_1:85971100-85971119 None:intergenic 30.0%
!!! CTGTTATTTTTCTTGCTCTA+AGG - chr6_1:85971098-85971117 Msa0896210:CDS 30.0%
! AAATGTGATGGAAAATTGCT+TGG - chr6_1:85971128-85971147 Msa0896210:exon 30.0%
! AAGGTTTAAAATTGTCTCCA+AGG - chr6_1:85971191-85971210 Msa0896210:intron 30.0%
AGAAAAAGTTGTGAATCTCT+TGG - chr6_1:85971416-85971435 Msa0896210:five_prime_UTR 30.0%
GCATACATTTGATGTGTTTA+AGG - chr6_1:85971657-85971676 Msa0896210:five_prime_UTR 30.0%
!! TTCCATTGTTGCTTTATCTA+TGG - chr6_1:85971684-85971703 Msa0896210:five_prime_UTR 30.0%
AAATATGGTTCATAGATGCA+TGG + chr6_1:85971727-85971746 None:intergenic 30.0%
CATGTTTCAAGGATTGTTTG+TGG + chr6_1:85967013-85967032 None:intergenic 35.0%
TCATAAACTAATCCACACTG+AGG - chr6_1:85967040-85967059 Msa0896210:three_prime_UTR 35.0%
CAAGCTACATTATGTGTCAT+AGG + chr6_1:85967282-85967301 None:intergenic 35.0%
! GATGAGGTGACAAATGTTTT+AGG + chr6_1:85967309-85967328 None:intergenic 35.0%
! ACGTGGGTAAATAGTCATTT+TGG + chr6_1:85967453-85967472 None:intergenic 35.0%
AAGAATAAGTGATCACACGT+GGG + chr6_1:85967469-85967488 None:intergenic 35.0%
TAAGAATAAGTGATCACACG+TGG + chr6_1:85967470-85967489 None:intergenic 35.0%
CGTGTGATCACTTATTCTTA+AGG - chr6_1:85967470-85967489 Msa0896210:CDS 35.0%
GATCACTTATTCTTAAGGAG+TGG - chr6_1:85967475-85967494 Msa0896210:CDS 35.0%
ACTGATCTTTGTGAAGATAG+AGG + chr6_1:85967535-85967554 None:intergenic 35.0%
!! GAAGAAATCACCATTTTGGT+TGG + chr6_1:85967631-85967650 None:intergenic 35.0%
GGAAAAAAGGACACTTACTT+AGG + chr6_1:85967730-85967749 None:intergenic 35.0%
! ATCTGATATGCTGCATCTTT+TGG + chr6_1:85967861-85967880 None:intergenic 35.0%
TGATGTTAGATGGAAAACCA+AGG - chr6_1:85967895-85967914 Msa0896210:intron 35.0%
! TGGCTTCATTTGTTACTACT+TGG - chr6_1:85967925-85967944 Msa0896210:intron 35.0%
ATGATAAGCTTATCACACTC+AGG + chr6_1:85967957-85967976 None:intergenic 35.0%
TGAGTGTGATAAGCTTATCA+TGG - chr6_1:85967956-85967975 Msa0896210:intron 35.0%
CAGATAGGATCTTGATATTG+CGG - chr6_1:85968094-85968113 Msa0896210:intron 35.0%
! GATTTTGCAAAAGCTACATC+AGG + chr6_1:85968192-85968211 None:intergenic 35.0%
! GATGTAGCTTTTGCAAAATC+AGG - chr6_1:85968192-85968211 Msa0896210:CDS 35.0%
TCTCTTTCTAAATCTGACGA+TGG - chr6_1:85968378-85968397 Msa0896210:CDS 35.0%
TTGAATAGGGACGAAATTGA+TGG - chr6_1:85968492-85968511 Msa0896210:CDS 35.0%
! GATGGATGAGAGTATAGTAT+AGG - chr6_1:85968510-85968529 Msa0896210:CDS 35.0%
CCAATTTGAGCTATACCATT+AGG + chr6_1:85968643-85968662 None:intergenic 35.0%
CCTAATGGTATAGCTCAAAT+TGG - chr6_1:85968640-85968659 Msa0896210:intron 35.0%
AATGGTATAGCTCAAATTGG+GGG - chr6_1:85968643-85968662 Msa0896210:intron 35.0%
AGCAGAGAATGATAGTTTCA+GGG + chr6_1:85968866-85968885 None:intergenic 35.0%
TTTGTTCAATTGTGCAGAAC+CGG - chr6_1:85969133-85969152 Msa0896210:intron 35.0%
! GTGCTATTATATTCACACAC+CGG + chr6_1:85969155-85969174 None:intergenic 35.0%
CATCTATTCAATGCTCCTAT+TGG - chr6_1:85969174-85969193 Msa0896210:intron 35.0%
!! GCCTAGCTTTTAAAAGGAAA+TGG - chr6_1:85969259-85969278 Msa0896210:intron 35.0%
!! GCCATTTCCTTTTAAAAGCT+AGG + chr6_1:85969263-85969282 None:intergenic 35.0%
ACTATGTTAGGCTTATCGTA+TGG + chr6_1:85969312-85969331 None:intergenic 35.0%
GATAAGCCTAACATAGTTAC+TGG - chr6_1:85969315-85969334 Msa0896210:intron 35.0%
TTAGCTCCAGTAACTATGTT+AGG + chr6_1:85969324-85969343 None:intergenic 35.0%
! GTTCTGTATTTTCTTAGAGG+CGG - chr6_1:85969443-85969462 Msa0896210:CDS 35.0%
! TCTAAAATCATGTTGAGGGT+GGG + chr6_1:85969475-85969494 None:intergenic 35.0%
! ATCTAAAATCATGTTGAGGG+TGG + chr6_1:85969476-85969495 None:intergenic 35.0%
! GCTGTAAAGAAGTACATTTC+TGG - chr6_1:85969525-85969544 Msa0896210:CDS 35.0%
TGTGTGGTTAAGAAATGTGT+TGG - chr6_1:85969579-85969598 Msa0896210:CDS 35.0%
GATGAGGCAATAAATTTAGC+AGG + chr6_1:85969723-85969742 None:intergenic 35.0%
AACCCTAAACTAAAGCAGAA+AGG + chr6_1:85969909-85969928 None:intergenic 35.0%
TTCTCAAACAGTTTCACAAG+TGG + chr6_1:85969970-85969989 None:intergenic 35.0%
GCTGTTTAAATATGCTACAC+AGG - chr6_1:85970170-85970189 Msa0896210:intron 35.0%
AATATGCTACACAGGTTTGT+TGG - chr6_1:85970178-85970197 Msa0896210:intron 35.0%
! ATATGCTACACAGGTTTGTT+GGG - chr6_1:85970179-85970198 Msa0896210:intron 35.0%
TTTGTTGGGAAAAATTTGCC+AGG - chr6_1:85970193-85970212 Msa0896210:intron 35.0%
AAAATTTGCCAGGTACTTTG+AGG - chr6_1:85970203-85970222 Msa0896210:intron 35.0%
TCCATTGAAAGCTGTTGAAA+TGG - chr6_1:85970272-85970291 Msa0896210:intron 35.0%
ACCATTTCAACAGCTTTCAA+TGG + chr6_1:85970276-85970295 None:intergenic 35.0%
GCTTCTTACTAAGAAGAACA+AGG - chr6_1:85970377-85970396 Msa0896210:intron 35.0%
! TACTTTTCACCAATGGCAAA+CGG + chr6_1:85970491-85970510 None:intergenic 35.0%
TACTACCAATTTATACGGCT+AGG - chr6_1:85970920-85970939 Msa0896210:CDS 35.0%
TAAGGGCTACAAAAATGTGA+TGG - chr6_1:85971116-85971135 Msa0896210:CDS 35.0%
! AACACAAGAATTCTGAAGGA+AGG - chr6_1:85971153-85971172 Msa0896210:five_prime_UTR 35.0%
AAGGAAGGAATTGAGAAAAC+AGG - chr6_1:85971168-85971187 Msa0896210:intron 35.0%
AAGGAATTGAGAAAACAGGA+AGG - chr6_1:85971172-85971191 Msa0896210:intron 35.0%
AAAATTGTCTCCAAGGACAT+AGG - chr6_1:85971198-85971217 Msa0896210:five_prime_UTR 35.0%
AAAATACGGATGGATAGTTC+CGG - chr6_1:85971293-85971312 Msa0896210:five_prime_UTR 35.0%
TTCAAAAGATGCTCATGTTG+CGG - chr6_1:85971461-85971480 Msa0896210:five_prime_UTR 35.0%
AAGCTGAGATTCTTAGGTAT+TGG - chr6_1:85971535-85971554 Msa0896210:five_prime_UTR 35.0%
!! TATTGGAAGAAGCTTGTTGA+TGG - chr6_1:85971552-85971571 Msa0896210:five_prime_UTR 35.0%
CTCCATAGATAAAGCAACAA+TGG + chr6_1:85971689-85971708 None:intergenic 35.0%
GTTTGTGGGTGAAGTAGATT+TGG + chr6_1:85966998-85967017 None:intergenic 40.0%
!!! GATCTTTTTTGTCCTCAGTG+TGG + chr6_1:85967055-85967074 None:intergenic 40.0%
TTGCACATTCGTCAAGAAGT+GGG - chr6_1:85967191-85967210 Msa0896210:CDS 40.0%
AAAACTGTTGTCGATCGATG+AGG + chr6_1:85967325-85967344 None:intergenic 40.0%
CAAAGATCATTGTAACAGCG+AGG - chr6_1:85967413-85967432 Msa0896210:CDS 40.0%
CAGAACTCATCCAACCAAAA+TGG - chr6_1:85967618-85967637 Msa0896210:CDS 40.0%
! ATGTTCTCGTTTTGTCCATC+TGG + chr6_1:85967667-85967686 None:intergenic 40.0%
TGGAAAACCAAGGCTTAACT+TGG - chr6_1:85967905-85967924 Msa0896210:intron 40.0%
AATGAAGCCAAGTTAAGCCT+TGG + chr6_1:85967915-85967934 None:intergenic 40.0%
!! TTTATGGTGTTGCAGCTGTT+TGG - chr6_1:85968329-85968348 Msa0896210:CDS 40.0%
CTAAATCTGACGATGGTCTA+CGG - chr6_1:85968385-85968404 Msa0896210:CDS 40.0%
TGACGAGATAGGGATAGTTT+AGG - chr6_1:85968570-85968589 Msa0896210:intron 40.0%
GACGAGATAGGGATAGTTTA+GGG - chr6_1:85968571-85968590 Msa0896210:intron 40.0%
GAGCAGAGAATGATAGTTTC+AGG + chr6_1:85968867-85968886 None:intergenic 40.0%
CAGACTAAGAGAAAAGCAGA+AGG - chr6_1:85969282-85969301 Msa0896210:intron 40.0%
CTAAAATCATGTTGAGGGTG+GGG + chr6_1:85969474-85969493 None:intergenic 40.0%
GTGGTTAAGAAATGTGTTGG+TGG - chr6_1:85969582-85969601 Msa0896210:CDS 40.0%
AGAGGAAACAAAGCATGAGA+CGG + chr6_1:85969783-85969802 None:intergenic 40.0%
! CGCCTTTCTGCTTTAGTTTA+GGG - chr6_1:85969904-85969923 Msa0896210:intron 40.0%
GAGCTATCATAGAGAGCTTA+TGG + chr6_1:85970020-85970039 None:intergenic 40.0%
TTAAACAGCGTCAAACATCG+AGG + chr6_1:85970159-85970178 None:intergenic 40.0%
!! GTACTTTGAGGTTGAGCTAA+AGG - chr6_1:85970215-85970234 Msa0896210:intron 40.0%
AAAGGAAGTGAAACTCACAG+AGG - chr6_1:85970233-85970252 Msa0896210:intron 40.0%
CACAGAGGATTACTATGTGA+TGG - chr6_1:85970248-85970267 Msa0896210:intron 40.0%
!! ATCTGTGTTGCAGCCATTTT+GGG - chr6_1:85970309-85970328 Msa0896210:intron 40.0%
ACTAAGAAGAACAAGGAGAC+AGG - chr6_1:85970384-85970403 Msa0896210:intron 40.0%
ATGGGATACTCCAATTCATG+TGG - chr6_1:85970407-85970426 Msa0896210:intron 40.0%
AGAAGATCAGGGTAGAGAAA+CGG + chr6_1:85970459-85970478 None:intergenic 40.0%
TTCTCTACCCTGATCTTCTA+TGG - chr6_1:85970460-85970479 Msa0896210:intron 40.0%
TCTCTACCCTGATCTTCTAT+GGG - chr6_1:85970461-85970480 Msa0896210:intron 40.0%
GGAAATCCCATAGAAGATCA+GGG + chr6_1:85970470-85970489 None:intergenic 40.0%
AATGTTAGCGGTCACAAGTA+CGG - chr6_1:85970513-85970532 Msa0896210:intron 40.0%
!! TTGTTTACCCTGGTATTGGT+TGG - chr6_1:85970538-85970557 Msa0896210:intron 40.0%
!! TGTTTACCCTGGTATTGGTT+GGG - chr6_1:85970539-85970558 Msa0896210:intron 40.0%
AAACAACCCAACCAATACCA+GGG + chr6_1:85970548-85970567 None:intergenic 40.0%
TTCAGAGAGAATGCAACAAG+TGG + chr6_1:85971228-85971247 None:intergenic 40.0%
GCAGACCATCTGAGAAAATA+CGG - chr6_1:85971279-85971298 Msa0896210:five_prime_UTR 40.0%
ACCATCTGAGAAAATACGGA+TGG - chr6_1:85971283-85971302 Msa0896210:five_prime_UTR 40.0%
! TCCATCCGTATTTTCTCAGA+TGG + chr6_1:85971287-85971306 None:intergenic 40.0%
AAACCCTTGATTGTTGTGAG+TGG - chr6_1:85971622-85971641 Msa0896210:five_prime_UTR 40.0%
AAGCCACTCACAACAATCAA+GGG + chr6_1:85971628-85971647 None:intergenic 40.0%
AAAGCCACTCACAACAATCA+AGG + chr6_1:85971629-85971648 None:intergenic 40.0%
GTTCATAGATGCATGGACAT+TGG + chr6_1:85971720-85971739 None:intergenic 40.0%
CGAATGTGCAACGCTATGTT+GGG + chr6_1:85967182-85967201 None:intergenic 45.0%
ACGAATGTGCAACGCTATGT+TGG + chr6_1:85967183-85967202 None:intergenic 45.0%
GTTGCACATTCGTCAAGAAG+TGG - chr6_1:85967190-85967209 Msa0896210:CDS 45.0%
TCAACTGTCACACATCCAGA+TGG - chr6_1:85967649-85967668 Msa0896210:intron 45.0%
TTCTAGATACGTGCGTGAAC+AGG - chr6_1:85967702-85967721 Msa0896210:intron 45.0%
TTATGGTTGCGATCGCAGAT+AGG - chr6_1:85968079-85968098 Msa0896210:intron 45.0%
TGGTATCACAGCGAGTTTGT+TGG - chr6_1:85968150-85968169 Msa0896210:CDS 45.0%
CAATGCTCCTATTGGTGAAG+AGG - chr6_1:85969182-85969201 Msa0896210:intron 45.0%
GCAGTTTCCTCTTCACCAAT+AGG + chr6_1:85969192-85969211 None:intergenic 45.0%
!! CAGTAGGTGTTGGAACAGTA+GGG - chr6_1:85969211-85969230 Msa0896210:intron 45.0%
GTCATCAGAGGCGATAATGT+TGG - chr6_1:85969233-85969252 Msa0896210:intron 45.0%
!!! TGGCTGGCCTAGCTTTTAAA+AGG - chr6_1:85969253-85969272 Msa0896210:intron 45.0%
AGTTACTGGAGCTAATGTGC+AGG - chr6_1:85969329-85969348 Msa0896210:intron 45.0%
TGGTGGAGAAAATTCCTCTC+TGG - chr6_1:85969599-85969618 Msa0896210:CDS 45.0%
TCTGACCTTACCTTTGAGTC+GGG + chr6_1:85969647-85969666 None:intergenic 45.0%
GTCTGACCTTACCTTTGAGT+CGG + chr6_1:85969648-85969667 None:intergenic 45.0%
CTATGTACGTTGTGGATGAG+TGG + chr6_1:85969700-85969719 None:intergenic 45.0%
TTAGCAGGCTATGTACGTTG+TGG + chr6_1:85969708-85969727 None:intergenic 45.0%
AGGAAACAAAGCATGAGACG+GGG + chr6_1:85969781-85969800 None:intergenic 45.0%
GAGGAAACAAAGCATGAGAC+GGG + chr6_1:85969782-85969801 None:intergenic 45.0%
! GCGCCTTTCTGCTTTAGTTT+AGG - chr6_1:85969903-85969922 Msa0896210:intron 45.0%
CAAACATCGAGGTCTCTGTT+TGG + chr6_1:85970148-85970167 None:intergenic 45.0%
! TAGCTCAACCTCAAAGTACC+TGG + chr6_1:85970214-85970233 None:intergenic 45.0%
CAAAATGGCTGCAACACAGA+TGG + chr6_1:85970310-85970329 None:intergenic 45.0%
! CATCTGTGTTGCAGCCATTT+TGG - chr6_1:85970308-85970327 Msa0896210:intron 45.0%
! AGTCAGCGTTGAACCCAAAA+TGG + chr6_1:85970325-85970344 None:intergenic 45.0%
!!! ATTTTGGGTTCAACGCTGAC+TGG - chr6_1:85970324-85970343 Msa0896210:intron 45.0%
AGAAGAACAAGGAGACAGGA+TGG - chr6_1:85970388-85970407 Msa0896210:intron 45.0%
GAAGAACAAGGAGACAGGAT+GGG - chr6_1:85970389-85970408 Msa0896210:intron 45.0%
CGGAAATCCCATAGAAGATC+AGG + chr6_1:85970471-85970490 None:intergenic 45.0%
ATGGGATTTCCGTTTGCCAT+TGG - chr6_1:85970479-85970498 Msa0896210:intron 45.0%
!! AAGTACGGTCTTGTTTACCC+TGG - chr6_1:85970528-85970547 Msa0896210:intron 45.0%
!! GGTCTTGTTTACCCTGGTAT+TGG - chr6_1:85970534-85970553 Msa0896210:intron 45.0%
CAAACAACCCAACCAATACC+AGG + chr6_1:85970549-85970568 None:intergenic 45.0%
!! CTGGTATTGGTTGGGTTGTT+TGG - chr6_1:85970547-85970566 Msa0896210:intron 45.0%
!! GAGACATAAAGCTGACTTGC+CGG - chr6_1:85970569-85970588 Msa0896210:intron 45.0%
CGAAGCCTAGCCGTATAAAT+TGG + chr6_1:85970928-85970947 None:intergenic 45.0%
ATTTATACGGCTAGGCTTCG+AGG - chr6_1:85970928-85970947 Msa0896210:intron 45.0%
GGCGAACACAAGAATTCTGA+AGG - chr6_1:85971149-85971168 Msa0896210:five_prime_UTR 45.0%
AATCCTCCCTAATCACCACT+CGG + chr6_1:85971359-85971378 None:intergenic 45.0%
GGACTCAAGCTGAGATTCTT+AGG - chr6_1:85971529-85971548 Msa0896210:five_prime_UTR 45.0%
!! CTTGTTGATGGCAAGAGAGT+TGG - chr6_1:85971564-85971583 Msa0896210:five_prime_UTR 45.0%
!!! TAAAATTATAAGTTATTTTA+TGG - chr6_1:85968313-85968332 Msa0896210:CDS 5.0%
GTAACAGCGAGGTGTAGAGT+CGG - chr6_1:85967424-85967443 Msa0896210:CDS 50.0%
TCCTGTCACTACTGAGCTTC+AGG - chr6_1:85968016-85968035 Msa0896210:intron 50.0%
ACCTGAAGCTCAGTAGTGAC+AGG + chr6_1:85968020-85968039 None:intergenic 50.0%
CAGGTTTGTCAGAATCAGCG+TGG + chr6_1:85968223-85968242 None:intergenic 50.0%
!! CGCTGATTCTGACAAACCTG+CGG - chr6_1:85968223-85968242 Msa0896210:CDS 50.0%
!! TGCATGCTTGTTATCACCGC+AGG + chr6_1:85968242-85968261 None:intergenic 50.0%
! ATAGCTCAAATTGGGGGTGC+AGG - chr6_1:85968649-85968668 Msa0896210:intron 50.0%
GGTGAAGAGGAAACTGCAGT+AGG - chr6_1:85969195-85969214 Msa0896210:intron 50.0%
GAGGAAACTGCAGTAGGTGT+TGG - chr6_1:85969201-85969220 Msa0896210:intron 50.0%
!! GCAGTAGGTGTTGGAACAGT+AGG - chr6_1:85969210-85969229 Msa0896210:intron 50.0%
TGGAACAGTAGGGTCATCAG+AGG - chr6_1:85969221-85969240 Msa0896210:intron 50.0%
TCAGAGGCGATAATGTTGGC+TGG - chr6_1:85969237-85969256 Msa0896210:intron 50.0%
GACTGCATGCTCACTTCGAT+AGG - chr6_1:85969412-85969431 Msa0896210:intron 50.0%
CGTTCGGACAGAAACATGTG+TGG - chr6_1:85969563-85969582 Msa0896210:CDS 50.0%
AGGCTGAAGGCCTAAAGCAA+GGG + chr6_1:85969674-85969693 None:intergenic 50.0%
TAGGCTGAAGGCCTAAAGCA+AGG + chr6_1:85969675-85969694 None:intergenic 50.0%
! ACGTTGTGGATGAGTGGACT+AGG + chr6_1:85969694-85969713 None:intergenic 50.0%
! AAAGCTAGGTGTCGCATCAG+AGG + chr6_1:85969801-85969820 None:intergenic 50.0%
! CTGATGCGACACCTAGCTTT+AGG - chr6_1:85969801-85969820 Msa0896210:intron 50.0%
GCAATGTGAGGCCTAAAGCT+AGG + chr6_1:85969815-85969834 None:intergenic 50.0%
TTTAGGCCTCACATTGCCTG+CGG - chr6_1:85969818-85969837 Msa0896210:intron 50.0%
! AACGCTGACTGGAGAGTTTG+AGG - chr6_1:85970335-85970354 Msa0896210:intron 50.0%
CTCGCAGCATCCACATGAAT+TGG + chr6_1:85970420-85970439 None:intergenic 50.0%
ATTCATGTGGATGCTGCGAG+CGG - chr6_1:85970420-85970439 Msa0896210:intron 50.0%
AAGTGGCACACCTATGTCCT+TGG + chr6_1:85971211-85971230 None:intergenic 50.0%
GGAGGATTTCAGCTGTAGCT+TGG - chr6_1:85971371-85971390 Msa0896210:five_prime_UTR 50.0%
TATCGCGAGTGAGACAAGTG+AGG - chr6_1:85971485-85971504 Msa0896210:five_prime_UTR 50.0%
CAAGAGAGTTGGAGCATGCT+AGG - chr6_1:85971575-85971594 Msa0896210:five_prime_UTR 50.0%
TAGTAGCAGGCCCGACTCAA+AGG - chr6_1:85969634-85969653 Msa0896210:intron 55.0%
GTCAGACGAGCCCTTGCTTT+AGG - chr6_1:85969661-85969680 Msa0896210:intron 55.0%
!! GGATGAGTGGACTAGGCTGA+AGG + chr6_1:85969687-85969706 None:intergenic 55.0%
! GCGATGTGTTTTGCGTCTGC+GGG + chr6_1:85971330-85971349 None:intergenic 55.0%
! GGCGATGTGTTTTGCGTCTG+CGG + chr6_1:85971331-85971350 None:intergenic 55.0%
CCTAATCACCACTCGGAGGA+CGG + chr6_1:85971352-85971371 None:intergenic 55.0%
CGTCCTCCGAGTGGTGATTA+GGG - chr6_1:85971350-85971369 Msa0896210:five_prime_UTR 55.0%
GCAGGCCCGACTCAAAGGTA+AGG - chr6_1:85969639-85969658 Msa0896210:intron 60.0%
TACCATACAAGGCCGACCGC+AGG + chr6_1:85969837-85969856 None:intergenic 60.0%
! TCTGCGGGCATTGTGTAGGC+CGG + chr6_1:85971315-85971334 None:intergenic 60.0%
! TGCGTCTGCGGGCATTGTGT+AGG + chr6_1:85971319-85971338 None:intergenic 60.0%
CCGTCCTCCGAGTGGTGATT+AGG - chr6_1:85971349-85971368 Msa0896210:five_prime_UTR 60.0%
CCTCCCTAATCACCACTCGG+AGG + chr6_1:85971356-85971375 None:intergenic 60.0%
CCTCCGAGTGGTGATTAGGG+AGG - chr6_1:85971353-85971372 Msa0896210:five_prime_UTR 60.0%
GGCCTCACATTGCCTGCGGT+CGG - chr6_1:85969822-85969841 Msa0896210:intron 65.0%
! TGCCTGCGGTCGGCCTTGTA+TGG - chr6_1:85969832-85969851 Msa0896210:intron 65.0%
CATGTGGATGCTGCGAGCGG+TGG - chr6_1:85970423-85970442 Msa0896210:intron 65.0%
ACACATCGCCGTCCTCCGAG+TGG - chr6_1:85971341-85971360 Msa0896210:five_prime_UTR 65.0%
GGCCGACCGCAGGCAATGTG+AGG + chr6_1:85969827-85969846 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 85966964 85971812 85966964 ID=Msa0896210;Name=Msa0896210
chr6_1 mRNA 85966964 85971812 85966964 ID=Msa0896210-mRNA-1;Parent=Msa0896210;Name=Msa0896210-mRNA-1;_AED=0.24;_eAED=0.24;_QI=653|1|1|1|0.83|0.71|7|216|499
chr6_1 exon 85966964 85967656 85966964 ID=Msa0896210-mRNA-1:exon:14496;Parent=Msa0896210-mRNA-1
chr6_1 exon 85967827 85967879 85967827 ID=Msa0896210-mRNA-1:exon:14495;Parent=Msa0896210-mRNA-1
chr6_1 exon 85968116 85968584 85968116 ID=Msa0896210-mRNA-1:exon:14494;Parent=Msa0896210-mRNA-1
chr6_1 exon 85969426 85969626 85969426 ID=Msa0896210-mRNA-1:exon:14493;Parent=Msa0896210-mRNA-1
chr6_1 exon 85970739 85970943 85970739 ID=Msa0896210-mRNA-1:exon:14492;Parent=Msa0896210-mRNA-1
chr6_1 exon 85971045 85971177 85971045 ID=Msa0896210-mRNA-1:exon:14491;Parent=Msa0896210-mRNA-1
chr6_1 exon 85971198 85971812 85971198 ID=Msa0896210-mRNA-1:exon:14490;Parent=Msa0896210-mRNA-1
chr6_1 five_prime_UTR 85971198 85971812 85971198 ID=Msa0896210-mRNA-1:five_prime_utr;Parent=Msa0896210-mRNA-1
chr6_1 five_prime_UTR 85971140 85971177 85971140 ID=Msa0896210-mRNA-1:five_prime_utr;Parent=Msa0896210-mRNA-1
chr6_1 CDS 85971045 85971139 85971045 ID=Msa0896210-mRNA-1:cds;Parent=Msa0896210-mRNA-1
chr6_1 CDS 85970739 85970943 85970739 ID=Msa0896210-mRNA-1:cds;Parent=Msa0896210-mRNA-1
chr6_1 CDS 85969426 85969626 85969426 ID=Msa0896210-mRNA-1:cds;Parent=Msa0896210-mRNA-1
chr6_1 CDS 85968116 85968584 85968116 ID=Msa0896210-mRNA-1:cds;Parent=Msa0896210-mRNA-1
chr6_1 CDS 85967827 85967879 85967827 ID=Msa0896210-mRNA-1:cds;Parent=Msa0896210-mRNA-1
chr6_1 CDS 85967180 85967656 85967180 ID=Msa0896210-mRNA-1:cds;Parent=Msa0896210-mRNA-1
chr6_1 three_prime_UTR 85966964 85967179 85966964 ID=Msa0896210-mRNA-1:three_prime_utr;Parent=Msa0896210-mRNA-1
Gene Sequence

>Msa0896210

ATGGTGATTTCTTCAACTGTCACACATCCAGATGGACAAAACGAGAACATAGCATGCACTTTCGCTTCTAGATACGTGCGTGAACAGGTTCCTAAGTTCAAGATGCCAGAGAATTCTATACCAAAAGATGCAGCATATCAGATAATAAATGATGAGTTGATGTTAGATGGAAAACCAAGGCTTAACTTGGCTTCATTTGTTACTACTTGGATGGAACCTGAGTGTGATAAGCTTATCATGGATTCACTTAACAAGAACTATGTTGATATGGATGAGTATCCTGTCACTACTGAGCTTCAGAACCGGTGTGTGAATATAATAGCACATCTATTCAATGCTCCTATTGGTGAAGAGGAAACTGCAGTAGGTGTTGGAACAGTAGGGTCATCAGAGGCGATAATGTTGGCTGGCCTAGCTTTTAAAAGGAAATGGCAGACTAAGAGAAAAGCAGAAGGCAAACCATACGATAAGCCTAACATAGTTACTGGAGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCCAGGTACTTTGAGGTTGAGCTAAAGGAAGTGAAACTCACAGAGGATTACTATGTGATGGATCCATTGAAAGCTGTTGAAATGGTAGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGTTCAACGCTGACTGGAGAGTTTGAGGATGTGAAGCTTCTCAACGAGCTTCTTACTAAGAAGAACAAGGAGACAGGATGGGATACTCCAATTCATGTGGATGCTGCGAGCGGTGGATTTGTTGCTCCGTTTCTCTACCCTGATCTTCTATGGGATTTCCGTTTGCCATTGGTGAAAAGTATCAATGTTAGCGGTCACAAGTACGGTCTTGTTTACCCTGGTATTGGTTGGGTTGTTTGGAGACATAAAGCTGACTTGCCGGATGATCTTGTTTTTCACATCAATTATCTTGGATCTGATCAGCCAACTTTCACATTGAATTTCTCCAAAGGATCAAGTCAAATCATTGCTCAATACTACCAATTTATACGGCTAGGCTTCGAGGGCTACAAAAATGTGATGGAAAATTGCTTGGCGAACACAAGAATTCTGAAGGAAGGAATTGAGAAAACAGGAAGGTTTAAAATTGTCTCCAAGGACATAGGTGTGCCACTTGTTGCATTCTCTCTGAAAGACAGTAGCAAACACACAGTTTTTGAAATAGCAGACCATCTGAGAAAATACGGATGGATAGTTCCGGCCTACACAATGCCCGCAGACGCAAAACACATCGCCGTCCTCCGAGTGGTGATTAGGGAGGATTTCAGCTGTAGCTTGGCTGAAAGACTTGTTTCTGACATAGAAAAAGTTGTGAATCTCTTGGACACACTTCCAAGTTCTATCAATTCAAAAGATGCTCATGTTGCGGTTATCGCGAGTGAGACAAGTGAGGAAGTTAAGAAAGATATTACAGGGACTCAAGCTGAGATTCTTAGGTATTGGAAGAAGCTTGTTGATGGCAAGAGAGTTGGAGCATGCTAG

Protein sequence

>Msa0896210

MVISSTVTHPDGQNENIACTFASRYVREQVPKFKMPENSIPKDAAYQIINDELMLDGKPRLNLASFVTTWMEPECDKLIMDSLNKNYVDMDEYPVTTELQNRCVNIIAHLFNAPIGEEETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLTEDYYVMDPLKAVEMVDENTICVAAILGSTLTGEFEDVKLLNELLTKKNKETGWDTPIHVDAASGGFVAPFLYPDLLWDFRLPLVKSINVSGHKYGLVYPGIGWVVWRHKADLPDDLVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQFIRLGFEGYKNVMENCLANTRILKEGIEKTGRFKIVSKDIGVPLVAFSLKDSSKHTVFEIADHLRKYGWIVPAYTMPADAKHIAVLRVVIREDFSCSLAERLVSDIEKVVNLLDTLPSSINSKDAHVAVIASETSEEVKKDITGTQAEILRYWKKLVDGKRVGAC*