Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009420 | sp|Q9MAX6|COPE1_ORYSJ | 69.149 | 94 | 24 | 1 | 205 | 298 | 90 | 178 | 2.79e-38 | 141 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006390 | Msa0009420 | 0.806872 | 6.661104e-50 | -8.615850e-47 |
| Msa0009420 | Msa0039560 | 0.802154 | 6.417340e-49 | -8.615850e-47 |
| Msa0009420 | Msa0105260 | 0.810083 | 1.374600e-50 | -8.615850e-47 |
| Msa0009420 | Msa0191840 | 0.808757 | 2.647163e-50 | -8.615850e-47 |
| Msa0009420 | Msa0201070 | 0.815014 | 1.148310e-51 | -8.615850e-47 |
| Msa0009420 | Msa0220740 | 0.822859 | 1.890190e-53 | -8.615850e-47 |
| Msa0009420 | Msa0362450 | 0.808714 | 2.704418e-50 | -8.615850e-47 |
| Msa0009420 | Msa0490870 | 0.801615 | 8.280432e-49 | -8.615850e-47 |
| Msa0009420 | Msa0492840 | 0.837085 | 6.399721e-57 | -8.615850e-47 |
| Msa0009420 | Msa0538600 | 0.804595 | 2.003451e-49 | -8.615850e-47 |
| Msa0009420 | Msa0598790 | 0.808568 | 2.905304e-50 | -8.615850e-47 |
| Msa0009420 | Msa0598880 | -0.826779 | 2.248987e-54 | -8.615850e-47 |
| Msa0009420 | Msa0824390 | 0.801904 | 7.224742e-49 | -8.615850e-47 |
| Msa0009420 | Msa0893710 | 0.811225 | 7.786164e-51 | -8.615850e-47 |
| Msa0009420 | Msa0913060 | 0.805261 | 1.453593e-49 | -8.615850e-47 |
| Msa0009420 | Msa0967280 | 0.820149 | 7.988955e-53 | -8.615850e-47 |
| Msa0009420 | Msa0988010 | 0.828111 | 1.077866e-54 | -8.615850e-47 |
| Msa0009420 | Msa0998680 | 0.816051 | 6.747917e-52 | -8.615850e-47 |
| Msa0009420 | Msa1012180 | 0.804602 | 1.996481e-49 | -8.615850e-47 |
| Msa0009420 | Msa1054810 | 0.802392 | 5.733264e-49 | -8.615850e-47 |
| Msa0009420 | Msa1070120 | 0.846701 | 1.840753e-59 | -8.615850e-47 |
| Msa0009420 | Msa1185250 | 0.828927 | 6.846119e-55 | -8.615850e-47 |
| Msa0009420 | Msa1241130 | -0.818954 | 1.497069e-52 | -8.615850e-47 |
| Msa0009420 | Msa1261250 | 0.807908 | 4.016511e-50 | -8.615850e-47 |
| Msa0009420 | Msa1269920 | 0.800473 | 1.417626e-48 | -8.615850e-47 |
| Msa0009420 | Msa1269940 | 0.802296 | 5.999872e-49 | -8.615850e-47 |
| Msa0009420 | Msa1296220 | 0.807881 | 4.070634e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009420 | MtrunA17_Chr1g0158391 | 93.578 | 109 | 6 | 1 | 1 | 108 | 1 | 109 | 7.34e-63 | 210 |
| Msa0009420 | MtrunA17_Chr2g0293551 | 89.286 | 84 | 9 | 0 | 224 | 307 | 106 | 189 | 7.93e-46 | 158 |
| Msa0009420 | MtrunA17_Chr1g0158361 | 64.894 | 94 | 33 | 0 | 15 | 108 | 20 | 113 | 6.83e-32 | 122 |
| Msa0009420 | MtrunA17_Chr3g0088341 | 62.000 | 100 | 36 | 2 | 10 | 108 | 1 | 99 | 1.07e-27 | 114 |
| Msa0009420 | MtrunA17_Chr1g0158711 | 60.215 | 93 | 35 | 2 | 18 | 108 | 18 | 110 | 3.25e-25 | 107 |
| Msa0009420 | MtrunA17_Chr4g0072471 | 83.333 | 54 | 9 | 0 | 172 | 225 | 1 | 54 | 1.52e-22 | 97.1 |
| Msa0009420 | MtrunA17_Chr1g0157941 | 46.667 | 105 | 51 | 3 | 14 | 113 | 14 | 118 | 1.87e-20 | 92.8 |
| Msa0009420 | MtrunA17_Chr1g0158471 | 48.739 | 119 | 49 | 6 | 1 | 110 | 11 | 126 | 6.77e-20 | 91.3 |
| Msa0009420 | MtrunA17_Chr6g0467681 | 46.087 | 115 | 46 | 4 | 6 | 110 | 10 | 118 | 3.64e-19 | 89.0 |
| Msa0009420 | MtrunA17_Chr6g0467661 | 46.087 | 115 | 46 | 4 | 6 | 110 | 10 | 118 | 3.68e-19 | 89.0 |
| Msa0009420 | MtrunA17_Chr1g0158511 | 46.218 | 119 | 52 | 6 | 1 | 110 | 11 | 126 | 1.93e-18 | 86.7 |
| Msa0009420 | MtrunA17_Chr1g0157871 | 48.235 | 85 | 39 | 2 | 26 | 109 | 28 | 108 | 3.46e-16 | 79.7 |
| Msa0009420 | MtrunA17_Chr1g0157891 | 44.706 | 85 | 42 | 2 | 26 | 109 | 71 | 151 | 4.09e-14 | 71.6 |
| Msa0009420 | MtrunA17_Chr1g0158181 | 36.792 | 106 | 48 | 2 | 21 | 110 | 59 | 161 | 6.26e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0009420 | AT2G34840.2 | 63.918 | 97 | 30 | 1 | 202 | 298 | 14 | 105 | 4.97e-37 | 133 |
| Msa0009420 | AT1G30630.1 | 63.918 | 97 | 30 | 1 | 202 | 298 | 92 | 183 | 1.93e-36 | 134 |
| Msa0009420 | AT2G34840.1 | 63.918 | 97 | 30 | 1 | 202 | 298 | 93 | 184 | 3.66e-36 | 133 |
| Msa0009420 | AT4G30240.1 | 78.571 | 42 | 9 | 0 | 172 | 213 | 1 | 42 | 6.40e-15 | 75.1 |
| Msa0009420 | AT2G18860.3 | 73.810 | 42 | 11 | 0 | 172 | 213 | 1 | 42 | 1.68e-14 | 73.2 |
| Msa0009420 | AT2G18860.1 | 73.810 | 42 | 11 | 0 | 172 | 213 | 1 | 42 | 3.01e-14 | 72.8 |
Find 70 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCAAGTTATACTATTC+TGG | 0.253520 | 1_1:-13755501 | None:intergenic |
| AGTAGTTGGTTATGTGTATA+TGG | 0.276356 | 1_1:-13753012 | None:intergenic |
| CCGGAGAGATAAGGCTTAAA+AGG | 0.286535 | 1_1:-13751795 | None:intergenic |
| TGCAAATGCTTGGCTTGATT+TGG | 0.290501 | 1_1:+13754309 | Msa0009420:CDS |
| ATCGCAGCACGGCTTGAAAT+TGG | 0.292182 | 1_1:+13755428 | Msa0009420:CDS |
| CTCTGCAGCTGAGGAAGTTC+AGG | 0.316745 | 1_1:+13753174 | Msa0009420:CDS |
| TCGCACCGCGCCTTGTATAA+TGG | 0.325345 | 1_1:+13755357 | Msa0009420:CDS |
| TAGCTAATAGTTTCGATCTA+TGG | 0.328698 | 1_1:+13753134 | Msa0009420:CDS |
| GGATCAGATAAATCTATTCT+TGG | 0.373913 | 1_1:-13751720 | None:intergenic |
| ATTGCGAGATGCAGAAATTC+CGG | 0.393639 | 1_1:-13751814 | None:intergenic |
| AGTTGTGGTAAACAATTTCC+AGG | 0.398709 | 1_1:-13751741 | None:intergenic |
| GGAGCTTAGACGGTGAGCTT+TGG | 0.443548 | 1_1:-13752538 | None:intergenic |
| AACATTGTATACCATTCCTC+TGG | 0.447320 | 1_1:-13753731 | None:intergenic |
| ACAATGTTGAGGCTTGTTGC+TGG | 0.449037 | 1_1:+13753746 | Msa0009420:CDS |
| AATGACAACCTCCCTGTATG+AGG | 0.450392 | 1_1:-13755394 | None:intergenic |
| GATCAGATAAATCTATTCTT+GGG | 0.450623 | 1_1:-13751719 | None:intergenic |
| GCTTAGACGGTGAGCTTTGG+AGG | 0.457846 | 1_1:-13752535 | None:intergenic |
| TTACTCAGCTTGCAAATGCT+TGG | 0.460646 | 1_1:+13754299 | Msa0009420:CDS |
| CTGCTATTTCTAATGAACCT+TGG | 0.467449 | 1_1:+13751567 | Msa0009420:CDS |
| ACAGAATGGAATCAGCATAC+AGG | 0.470613 | 1_1:+13753675 | Msa0009420:intron |
| GGTGAGCTTTGGAGGTTTCA+CGG | 0.471198 | 1_1:-13752527 | None:intergenic |
| AGAATAGATTTATCTGATCC+TGG | 0.475195 | 1_1:+13751723 | Msa0009420:CDS |
| TGTAGTATTTATAGAAGTCA+TGG | 0.492858 | 1_1:+13755318 | Msa0009420:CDS |
| GGTTAAGACAGAAGAGAGAA+AGG | 0.503667 | 1_1:+13753702 | Msa0009420:CDS |
| GTTCAATCAGTGGTTTCCTC+TGG | 0.503830 | 1_1:+13752590 | Msa0009420:CDS |
| TGCCGCGATTTCCCTCATAC+AGG | 0.509450 | 1_1:+13755382 | Msa0009420:CDS |
| AGGATGAGTTTCACAGGGAC+TGG | 0.511394 | 1_1:-13751675 | None:intergenic |
| AGGAAACCACTGATTGAACT+TGG | 0.513981 | 1_1:-13752586 | None:intergenic |
| AATCATTCAGACAATTTCCA+AGG | 0.514821 | 1_1:-13751584 | None:intergenic |
| TGCTTGGCTTGATTTGGTTG+TGG | 0.520228 | 1_1:+13754315 | Msa0009420:CDS |
| CAGAATGGAATCAGCATACA+GGG | 0.520364 | 1_1:+13753676 | Msa0009420:intron |
| TCAGTGAGGATGAGTTTCAC+AGG | 0.526948 | 1_1:-13751681 | None:intergenic |
| TGTGTACAGTTGAGCTTGAA+GGG | 0.528559 | 1_1:-13751621 | None:intergenic |
| CAATGTTGAGGCTTGTTGCT+GGG | 0.533934 | 1_1:+13753747 | Msa0009420:CDS |
| TGTATATGGTTTCCAATCGC+AGG | 0.536114 | 1_1:-13752998 | None:intergenic |
| TGGCTTGCAGATCCTGCGAT+TGG | 0.539273 | 1_1:+13752986 | Msa0009420:CDS |
| TCGCGGCACGCCATTATACA+AGG | 0.549438 | 1_1:-13755367 | None:intergenic |
| TGAACAACAACGAGAGTAGT+TGG | 0.550134 | 1_1:-13753026 | None:intergenic |
| CGATCGCGAGTATTAAAGAA+TGG | 0.553150 | 1_1:+13752966 | Msa0009420:CDS |
| ATGTGTACAGTTGAGCTTGA+AGG | 0.557442 | 1_1:-13751622 | None:intergenic |
| GCAGAAATTCCGGAGAGATA+AGG | 0.558763 | 1_1:-13751804 | None:intergenic |
| TTGAACTTGGACGGTGAGGT+TGG | 0.560420 | 1_1:-13752573 | None:intergenic |
| AGCACGGCTTGAAATTGGCG+TGG | 0.567548 | 1_1:+13755433 | Msa0009420:CDS |
| TGGAATCAGCATACAGGGCA+TGG | 0.573816 | 1_1:+13753681 | Msa0009420:CDS |
| ATTCACGATTGGAGCTTAGA+CGG | 0.574785 | 1_1:-13752548 | None:intergenic |
| AGAGGAAGTGTACATATCAG+AGG | 0.580363 | 1_1:-13753200 | None:intergenic |
| TTCTTTCTTCTCTGCAGCTG+AGG | 0.581334 | 1_1:+13753165 | Msa0009420:CDS |
| AAAGGTCAAATCCAGAGGAA+TGG | 0.582421 | 1_1:+13753720 | Msa0009420:CDS |
| TGAGGTTGGAGATTCACGAT+TGG | 0.587323 | 1_1:-13752559 | None:intergenic |
| AGATCTTTATTAAGATGCAT+AGG | 0.590426 | 1_1:+13754218 | Msa0009420:CDS |
| GCGTTGAAGTATACTAATGC+TGG | 0.593369 | 1_1:+13753803 | Msa0009420:CDS |
| TACTAATGCTGGTGGAACCA+TGG | 0.596370 | 1_1:+13753814 | Msa0009420:CDS |
| ATGACAACCTCCCTGTATGA+GGG | 0.600199 | 1_1:-13755393 | None:intergenic |
| GAGAGAAAGGTCAAATCCAG+AGG | 0.600395 | 1_1:+13753715 | Msa0009420:CDS |
| GCCGCGATTTCCCTCATACA+GGG | 0.602603 | 1_1:+13755383 | Msa0009420:CDS |
| AACCACTGATTGAACTTGGA+CGG | 0.602863 | 1_1:-13752582 | None:intergenic |
| GTAGTATTTATAGAAGTCAT+GGG | 0.603063 | 1_1:+13755319 | Msa0009420:CDS |
| ATTATGCTGAGAGACAGCTT+CGG | 0.603893 | 1_1:+13754245 | Msa0009420:CDS |
| CACCGTCCAAGTTCAATCAG+TGG | 0.621289 | 1_1:+13752580 | Msa0009420:CDS |
| TTCACAGGGACTGGTTGAGT+AGG | 0.629636 | 1_1:-13751666 | None:intergenic |
| AGGAATGGTATACAATGTTG+AGG | 0.646493 | 1_1:+13753735 | Msa0009420:CDS |
| GATTATGCAGCAGATTGATG+AGG | 0.648715 | 1_1:+13754267 | Msa0009420:CDS |
| CAGTGAGGATGAGTTTCACA+GGG | 0.650069 | 1_1:-13751680 | None:intergenic |
| GCACGCCATTATACAAGGCG+CGG | 0.660390 | 1_1:-13755362 | None:intergenic |
| TTGTGGTCAAGTAAGAGTTG+TGG | 0.664372 | 1_1:-13751756 | None:intergenic |
| TTGAAGTATACTAATGCTGG+TGG | 0.676099 | 1_1:+13753806 | Msa0009420:CDS |
| TCCCTGTATGAGGGAAATCG+CGG | 0.677075 | 1_1:-13755384 | None:intergenic |
| CTGTATAATCAATGTCAGTG+AGG | 0.705411 | 1_1:-13751695 | None:intergenic |
| CTGATTGAACTTGGACGGTG+AGG | 0.709832 | 1_1:-13752577 | None:intergenic |
| GCGATTTCCCTCATACAGGG+AGG | 0.710448 | 1_1:+13755386 | Msa0009420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAATTTTAATTATGTTTAT+AGG | + | chr1_1:13753505-13753524 | Msa0009420:intron | 10.0% |
| !! | CTAATAATAATTTAAGAAAT+TGG | + | chr1_1:13754433-13754452 | Msa0009420:intron | 10.0% |
| !! | AAAATATACATTTAACATCA+AGG | + | chr1_1:13752184-13752203 | Msa0009420:intron | 15.0% |
| !! | AAATATACATTTAACATCAA+GGG | + | chr1_1:13752185-13752204 | Msa0009420:intron | 15.0% |
| !!! | ATTTTTTTTGAACAACAAAT+GGG | - | chr1_1:13752656-13752675 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTGAACAACAAA+TGG | - | chr1_1:13752657-13752676 | None:intergenic | 15.0% |
| !!! | CTTTTACTTGTTTTAATTTA+TGG | + | chr1_1:13753416-13753435 | Msa0009420:intron | 15.0% |
| !! | ACTTAATTCATTTAATGAAT+AGG | - | chr1_1:13753617-13753636 | None:intergenic | 15.0% |
| !!! | ATTTATTGTTTTATACAGAA+TGG | + | chr1_1:13753661-13753680 | Msa0009420:intron | 15.0% |
| !! | ATTTAACTGTATCTATTTAT+CGG | - | chr1_1:13753901-13753920 | None:intergenic | 15.0% |
| !! | TTAAAAATATCTTTGTGATT+TGG | + | chr1_1:13754000-13754019 | Msa0009420:intron | 15.0% |
| !! | TTTATTAGAACAATTCAATT+CGG | + | chr1_1:13754941-13754960 | Msa0009420:intron | 15.0% |
| !! | TAATTAAAACATACATGAAT+TGG | + | chr1_1:13755201-13755220 | Msa0009420:intron | 15.0% |
| !!! | AAATGTATATTTTGTAGTAG+TGG | - | chr1_1:13752177-13752196 | None:intergenic | 20.0% |
| !! | AATATACATTTAACATCAAG+GGG | + | chr1_1:13752186-13752205 | Msa0009420:intron | 20.0% |
| !! | TGTAAATGTTATATGATGTT+AGG | - | chr1_1:13752306-13752325 | None:intergenic | 20.0% |
| !!! | GAATTTATCATTGTTATTGT+AGG | + | chr1_1:13752937-13752956 | Msa0009420:intron | 20.0% |
| !! | TAAATAAAAGAAAGTGAAGA+GGG | - | chr1_1:13753233-13753252 | None:intergenic | 20.0% |
| !! | ATAAATAAAAGAAAGTGAAG+AGG | - | chr1_1:13753234-13753253 | None:intergenic | 20.0% |
| !! | ATTAATTTCATGTTATACTG+TGG | + | chr1_1:13753268-13753287 | Msa0009420:intron | 20.0% |
| !! | TTAATTTCATGTTATACTGT+GGG | + | chr1_1:13753269-13753288 | Msa0009420:intron | 20.0% |
| !!! | TTTAATTTATGGTATGCAAA+TGG | + | chr1_1:13753427-13753446 | Msa0009420:intron | 20.0% |
| !! | TGAAAATTATTGTACTAAGA+CGG | - | chr1_1:13753642-13753661 | None:intergenic | 20.0% |
| !! | GATAAATAGATACAGTTAAA+TGG | + | chr1_1:13753900-13753919 | Msa0009420:intron | 20.0% |
| !! | AATCATCATAAATTAGAAAG+AGG | - | chr1_1:13754769-13754788 | None:intergenic | 20.0% |
| !! | TTGAATTGTTCTAATAAACA+GGG | - | chr1_1:13754939-13754958 | None:intergenic | 20.0% |
| !! | ATTGAATTGTTCTAATAAAC+AGG | - | chr1_1:13754940-13754959 | None:intergenic | 20.0% |
| ! | GATCAGATAAATCTATTCTT+GGG | - | chr1_1:13751722-13751741 | None:intergenic | 25.0% |
| ! | GAAAAATTGATGAAAAGTTG+TGG | - | chr1_1:13751776-13751795 | None:intergenic | 25.0% |
| !!! | TATGGAACAAATTTTGACTT+AGG | + | chr1_1:13752051-13752070 | Msa0009420:intron | 25.0% |
| !!! | TATTTTGTAGTAGTGGAAAA+TGG | - | chr1_1:13752170-13752189 | None:intergenic | 25.0% |
| ! | ATATACATTTAACATCAAGG+GGG | + | chr1_1:13752187-13752206 | Msa0009420:intron | 25.0% |
| ! | AGTTGACATAAGTAAATGAT+GGG | + | chr1_1:13752276-13752295 | Msa0009420:intron | 25.0% |
| ! | TCATATAACATTTACATCAG+TGG | + | chr1_1:13752310-13752329 | Msa0009420:intron | 25.0% |
| ! | AGAAATTGTAACCTTTGAAT+CGG | - | chr1_1:13752877-13752896 | None:intergenic | 25.0% |
| !! | ATCATTGTTATTGTAGGAAT+CGG | + | chr1_1:13752943-13752962 | Msa0009420:intron | 25.0% |
| !!! | TATTTTCCTTTTGAAGATGT+TGG | + | chr1_1:13753111-13753130 | Msa0009420:intron | 25.0% |
| !!! | AACTATTTTTTGAACACTCA+TGG | + | chr1_1:13753350-13753369 | Msa0009420:intron | 25.0% |
| !!! | TTTTTTCTTGGGTAGTTAAA+TGG | + | chr1_1:13753452-13753471 | Msa0009420:intron | 25.0% |
| ! | ATCTCAAAAGTTTGAACTAT+TGG | + | chr1_1:13753530-13753549 | Msa0009420:intron | 25.0% |
| !!! | AAGCATTTTTTATACACTGA+CGG | + | chr1_1:13753851-13753870 | Msa0009420:intron | 25.0% |
| !! | ATCAGATTGATAGTTCTTAT+TGG | - | chr1_1:13753963-13753982 | None:intergenic | 25.0% |
| !! | AAAATATCTTTGTGATTTGG+TGG | + | chr1_1:13754003-13754022 | Msa0009420:intron | 25.0% |
| !!! | ATGTTGGTTTTGTGTTTTTT+AGG | + | chr1_1:13754179-13754198 | Msa0009420:intron | 25.0% |
| ! | AGATCTTTATTAAGATGCAT+AGG | + | chr1_1:13754218-13754237 | Msa0009420:CDS | 25.0% |
| ! | TTTACTACTTCGATAGTATT+TGG | - | chr1_1:13754512-13754531 | None:intergenic | 25.0% |
| ! | TTCAATTGCGTTATAGAAAT+AGG | + | chr1_1:13754570-13754589 | Msa0009420:intron | 25.0% |
| !!! | ATTTATTTTGTTTTGCCACT+AGG | + | chr1_1:13754602-13754621 | Msa0009420:intron | 25.0% |
| ! | AAAGAGGATTCATAACAAAT+AGG | - | chr1_1:13754753-13754772 | None:intergenic | 25.0% |
| ! | AAGAATTATTAAACCACCTA+AGG | - | chr1_1:13754855-13754874 | None:intergenic | 25.0% |
| ! | AGTGATAATAGATTAACGTT+CGG | - | chr1_1:13754888-13754907 | None:intergenic | 25.0% |
| ! | AACATACATGAATTGGTAAA+CGG | + | chr1_1:13755208-13755227 | Msa0009420:intron | 25.0% |
| ! | TGTAGTATTTATAGAAGTCA+TGG | + | chr1_1:13755318-13755337 | Msa0009420:CDS | 25.0% |
| ! | GTAGTATTTATAGAAGTCAT+GGG | + | chr1_1:13755319-13755338 | Msa0009420:CDS | 25.0% |
| AATCATTCAGACAATTTCCA+AGG | - | chr1_1:13751587-13751606 | None:intergenic | 30.0% | |
| GGATCAGATAAATCTATTCT+TGG | - | chr1_1:13751723-13751742 | None:intergenic | 30.0% | |
| AGAATAGATTTATCTGATCC+TGG | + | chr1_1:13751723-13751742 | Msa0009420:CDS | 30.0% | |
| ! | TGAGAGTATGTTTGATTGAA+TGG | - | chr1_1:13752022-13752041 | None:intergenic | 30.0% |
| CAAACATACTCTCATTGAAA+TGG | + | chr1_1:13752028-13752047 | Msa0009420:intron | 30.0% | |
| ATACTCTCATTGAAATGGTA+TGG | + | chr1_1:13752033-13752052 | Msa0009420:intron | 30.0% | |
| GTGAACACAAATCAATGAAA+AGG | + | chr1_1:13752085-13752104 | Msa0009420:intron | 30.0% | |
| !! | TTCATTATTTTATCCACAGC+AGG | + | chr1_1:13752114-13752133 | Msa0009420:intron | 30.0% |
| TATACATTTAACATCAAGGG+GGG | + | chr1_1:13752188-13752207 | Msa0009420:intron | 30.0% | |
| CAGTTGACATAAGTAAATGA+TGG | + | chr1_1:13752275-13752294 | Msa0009420:intron | 30.0% | |
| ACATTTACATCAGTGGAAAA+TGG | + | chr1_1:13752317-13752336 | Msa0009420:intron | 30.0% | |
| !!! | TCTAACTTTTTTCACATCAG+TGG | + | chr1_1:13752393-13752412 | Msa0009420:intron | 30.0% |
| !! | TCAAAACTTGTTTTTCCATC+AGG | - | chr1_1:13752428-13752447 | None:intergenic | 30.0% |
| AAAGTGAAGAAGGAAAAATG+TGG | - | chr1_1:13752487-13752506 | None:intergenic | 30.0% | |
| !! | TTTGAACAACAAATGGGTTA+GGG | - | chr1_1:13752650-13752669 | None:intergenic | 30.0% |
| !! | TTTTGAACAACAAATGGGTT+AGG | - | chr1_1:13752651-13752670 | None:intergenic | 30.0% |
| GAAATTGTAACCTTTGAATC+GGG | - | chr1_1:13752876-13752895 | None:intergenic | 30.0% | |
| AGTAGTTGGTTATGTGTATA+TGG | - | chr1_1:13753015-13753034 | None:intergenic | 30.0% | |
| GAATATGATTCCAAGATCAA+AGG | - | chr1_1:13753071-13753090 | None:intergenic | 30.0% | |
| TAGCTAATAGTTTCGATCTA+TGG | + | chr1_1:13753134-13753153 | Msa0009420:CDS | 30.0% | |
| !!! | ATGCAAATGGAGTTTTTTCT+TGG | + | chr1_1:13753440-13753459 | Msa0009420:intron | 30.0% |
| !!! | TGCAAATGGAGTTTTTTCTT+GGG | + | chr1_1:13753441-13753460 | Msa0009420:intron | 30.0% |
| TAAATGGAACAATAGAGACA+AGG | + | chr1_1:13753468-13753487 | Msa0009420:intron | 30.0% | |
| ! | GATTATCTTTTTGCATGAAC+AGG | + | chr1_1:13753769-13753788 | Msa0009420:CDS | 30.0% |
| !!! | CTTTTTTTGTTACAGTTCCA+TGG | - | chr1_1:13753834-13753853 | None:intergenic | 30.0% |
| !! | TTGATAATGATGATGAGAAG+AGG | + | chr1_1:13754132-13754151 | Msa0009420:intron | 30.0% |
| GATTGAATTTATCAGCATGT+TGG | + | chr1_1:13754460-13754479 | Msa0009420:intron | 30.0% | |
| TTAAACCACCTAAGGAATTA+GGG | - | chr1_1:13754847-13754866 | None:intergenic | 30.0% | |
| ATTAAACCACCTAAGGAATT+AGG | - | chr1_1:13754848-13754867 | None:intergenic | 30.0% | |
| GGTGGTTTAATAATTCTTGA+AGG | + | chr1_1:13754857-13754876 | Msa0009420:intron | 30.0% | |
| !! | CTGCTATTTCTAATGAACCT+TGG | + | chr1_1:13751567-13751586 | Msa0009420:CDS | 35.0% |
| CTGTATAATCAATGTCAGTG+AGG | - | chr1_1:13751698-13751717 | None:intergenic | 35.0% | |
| AGTTGTGGTAAACAATTTCC+AGG | - | chr1_1:13751744-13751763 | None:intergenic | 35.0% | |
| ACGGAATCAGCAACATAAAT+TGG | - | chr1_1:13751922-13751941 | None:intergenic | 35.0% | |
| TCCAATGATACTTTCGTCAA+CGG | - | chr1_1:13751941-13751960 | None:intergenic | 35.0% | |
| !!! | GGTTTAGTTTTTACATCAGC+AGG | + | chr1_1:13752209-13752228 | Msa0009420:intron | 35.0% |
| TCAGCAGGAAAAATATCTGA+AGG | + | chr1_1:13752224-13752243 | Msa0009420:intron | 35.0% | |
| CAGCAGGAAAAATATCTGAA+GGG | + | chr1_1:13752225-13752244 | Msa0009420:intron | 35.0% | |
| ! | TCTGTTTTACGATAGGGAAA+GGG | - | chr1_1:13752463-13752482 | None:intergenic | 35.0% |
| ! | ATCTGTTTTACGATAGGGAA+AGG | - | chr1_1:13752464-13752483 | None:intergenic | 35.0% |
| ! | TGTGGATCTGTTTTACGATA+GGG | - | chr1_1:13752469-13752488 | None:intergenic | 35.0% |
| ! | ATGTGGATCTGTTTTACGAT+AGG | - | chr1_1:13752470-13752489 | None:intergenic | 35.0% |
| ACTGAGTGAAAAAGTGAAGA+AGG | - | chr1_1:13752497-13752516 | None:intergenic | 35.0% | |
| GTTAGGGTTTCACGATTTAA+AGG | - | chr1_1:13752634-13752653 | None:intergenic | 35.0% | |
| ! | CACTGATTGAAAAGAGGTAA+GGG | - | chr1_1:13752687-13752706 | None:intergenic | 35.0% |
| ! | TCACTGATTGAAAAGAGGTA+AGG | - | chr1_1:13752688-13752707 | None:intergenic | 35.0% |
| ! | TACCTCTTTTCAATCAGTGA+TGG | + | chr1_1:13752688-13752707 | Msa0009420:intron | 35.0% |
| !! | TTTTCAATCAGTGATGGAGA+GGG | + | chr1_1:13752694-13752713 | Msa0009420:intron | 35.0% |
| TGGAATCTGGAAGAGATATA+AGG | + | chr1_1:13752717-13752736 | Msa0009420:intron | 35.0% | |
| GGAATCTGGAAGAGATATAA+GGG | + | chr1_1:13752718-13752737 | Msa0009420:intron | 35.0% | |
| TTAACAGCTTAAAGAGACGT+AGG | - | chr1_1:13752828-13752847 | None:intergenic | 35.0% | |
| TAGCTACCAACATCTTCAAA+AGG | - | chr1_1:13753120-13753139 | None:intergenic | 35.0% | |
| CTTGTCTATGTTTGCATCTA+TGG | + | chr1_1:13753303-13753322 | Msa0009420:intron | 35.0% | |
| ! | AACACTCATGGTAGTGAATT+TGG | + | chr1_1:13753362-13753381 | Msa0009420:intron | 35.0% |
| ! | ACACTCATGGTAGTGAATTT+GGG | + | chr1_1:13753363-13753382 | Msa0009420:intron | 35.0% |
| AACATTGTATACCATTCCTC+TGG | - | chr1_1:13753734-13753753 | None:intergenic | 35.0% | |
| AGGAATGGTATACAATGTTG+AGG | + | chr1_1:13753735-13753754 | Msa0009420:CDS | 35.0% | |
| TTGAAGTATACTAATGCTGG+TGG | + | chr1_1:13753806-13753825 | Msa0009420:CDS | 35.0% | |
| GTGGAATACAAGATGATCAT+TGG | + | chr1_1:13754022-13754041 | Msa0009420:intron | 35.0% | |
| ATGTCATCGTGATGATCATT+TGG | + | chr1_1:13754073-13754092 | Msa0009420:intron | 35.0% | |
| AAGTTAAAAACAGTCCTCGT+GGG | - | chr1_1:13754544-13754563 | None:intergenic | 35.0% | |
| CTAACTCAAGGGATTGATTA+GGG | - | chr1_1:13754802-13754821 | None:intergenic | 35.0% | |
| TAAACCACCTAAGGAATTAG+GGG | - | chr1_1:13754846-13754865 | None:intergenic | 35.0% | |
| !! | CTAATAAACAGGGTTAGTCT+AGG | - | chr1_1:13754929-13754948 | None:intergenic | 35.0% |
| ACAGCAACATGTGTCAATTA+GGG | + | chr1_1:13755097-13755116 | Msa0009420:intron | 35.0% | |
| AGGGTTACAAAGATTCATCT+CGG | + | chr1_1:13755116-13755135 | Msa0009420:intron | 35.0% | |
| !!! | AAAGTGCGATTTTGAGACAT+CGG | - | chr1_1:13755261-13755280 | None:intergenic | 35.0% |
| ACACTCAATCTGAAGAACAA+GGG | - | chr1_1:13755301-13755320 | None:intergenic | 35.0% | |
| TACACTCAATCTGAAGAACA+AGG | - | chr1_1:13755302-13755321 | None:intergenic | 35.0% | |
| TGTGTACAGTTGAGCTTGAA+GGG | - | chr1_1:13751624-13751643 | None:intergenic | 40.0% | |
| ATGTGTACAGTTGAGCTTGA+AGG | - | chr1_1:13751625-13751644 | None:intergenic | 40.0% | |
| TTGTGGTCAAGTAAGAGTTG+TGG | - | chr1_1:13751759-13751778 | None:intergenic | 40.0% | |
| !! | CCTTTTAAGCCTTATCTCTC+CGG | + | chr1_1:13751795-13751814 | Msa0009420:CDS | 40.0% |
| ATTGCGAGATGCAGAAATTC+CGG | - | chr1_1:13751817-13751836 | None:intergenic | 40.0% | |
| !! | TCCGTTGACGAAAGTATCAT+TGG | + | chr1_1:13751937-13751956 | Msa0009420:intron | 40.0% |
| ATCAGTGGAAAATGGAAACG+AGG | + | chr1_1:13752325-13752344 | Msa0009420:intron | 40.0% | |
| TCAGTGGAAAATGGAAACGA+GGG | + | chr1_1:13752326-13752345 | Msa0009420:intron | 40.0% | |
| GAAACGAGGGGAAAAAAATG+CGG | + | chr1_1:13752339-13752358 | Msa0009420:intron | 40.0% | |
| TTACGATAGGGAAAGGGATA+AGG | - | chr1_1:13752457-13752476 | None:intergenic | 40.0% | |
| ATTCACGATTGGAGCTTAGA+CGG | - | chr1_1:13752551-13752570 | None:intergenic | 40.0% | |
| ! | AACCACTGATTGAACTTGGA+CGG | - | chr1_1:13752585-13752604 | None:intergenic | 40.0% |
| ! | AGGAAACCACTGATTGAACT+TGG | - | chr1_1:13752589-13752608 | None:intergenic | 40.0% |
| ! | CTCCATCACTGATTGAAAAG+AGG | - | chr1_1:13752693-13752712 | None:intergenic | 40.0% |
| !! | CTTTTCAATCAGTGATGGAG+AGG | + | chr1_1:13752693-13752712 | Msa0009420:intron | 40.0% |
| !! | AGGAGCGAAATCGTTGATTT+CGG | - | chr1_1:13752808-13752827 | None:intergenic | 40.0% |
| TTTCTCATCACCCGATTCAA+AGG | + | chr1_1:13752863-13752882 | Msa0009420:intron | 40.0% | |
| CGATCGCGAGTATTAAAGAA+TGG | + | chr1_1:13752966-13752985 | Msa0009420:CDS | 40.0% | |
| TGTATATGGTTTCCAATCGC+AGG | - | chr1_1:13753001-13753020 | None:intergenic | 40.0% | |
| TGAACAACAACGAGAGTAGT+TGG | - | chr1_1:13753029-13753048 | None:intergenic | 40.0% | |
| ! | AGAGGAAGTGTACATATCAG+AGG | - | chr1_1:13753203-13753222 | None:intergenic | 40.0% |
| ATGGAACAATAGAGACAAGG+AGG | + | chr1_1:13753471-13753490 | Msa0009420:intron | 40.0% | |
| TGGAACAATAGAGACAAGGA+GGG | + | chr1_1:13753472-13753491 | Msa0009420:intron | 40.0% | |
| ACAGAATGGAATCAGCATAC+AGG | + | chr1_1:13753675-13753694 | Msa0009420:intron | 40.0% | |
| CAGAATGGAATCAGCATACA+GGG | + | chr1_1:13753676-13753695 | Msa0009420:intron | 40.0% | |
| GGTTAAGACAGAAGAGAGAA+AGG | + | chr1_1:13753702-13753721 | Msa0009420:CDS | 40.0% | |
| AAAGGTCAAATCCAGAGGAA+TGG | + | chr1_1:13753720-13753739 | Msa0009420:CDS | 40.0% | |
| GCGTTGAAGTATACTAATGC+TGG | + | chr1_1:13753803-13753822 | Msa0009420:CDS | 40.0% | |
| ATGATGAGAAGAGGATGTGA+GGG | + | chr1_1:13754141-13754160 | Msa0009420:intron | 40.0% | |
| GTTTGGAAGTGATTGGATGT+TGG | + | chr1_1:13754163-13754182 | Msa0009420:intron | 40.0% | |
| ATTATGCTGAGAGACAGCTT+CGG | + | chr1_1:13754245-13754264 | Msa0009420:CDS | 40.0% | |
| GATTATGCAGCAGATTGATG+AGG | + | chr1_1:13754267-13754286 | Msa0009420:CDS | 40.0% | |
| TTACTCAGCTTGCAAATGCT+TGG | + | chr1_1:13754299-13754318 | Msa0009420:CDS | 40.0% | |
| ! | TGCAAATGCTTGGCTTGATT+TGG | + | chr1_1:13754309-13754328 | Msa0009420:CDS | 40.0% |
| GTTGGACACTGATAGAAGTT+TGG | + | chr1_1:13754478-13754497 | Msa0009420:intron | 40.0% | |
| GTAAAAATATCGATCCCACG+AGG | + | chr1_1:13754527-13754546 | Msa0009420:intron | 40.0% | |
| GAAGTTAAAAACAGTCCTCG+TGG | - | chr1_1:13754545-13754564 | None:intergenic | 40.0% | |
| AAACCAAATCTACTGCCTAG+TGG | - | chr1_1:13754620-13754639 | None:intergenic | 40.0% | |
| ATCCTCTAAGTTCCCCTAAT+TGG | + | chr1_1:13754718-13754737 | Msa0009420:intron | 40.0% | |
| TAGGTGCAGTAGACCAATTA+GGG | - | chr1_1:13754734-13754753 | None:intergenic | 40.0% | |
| ATAGGTGCAGTAGACCAATT+AGG | - | chr1_1:13754735-13754754 | None:intergenic | 40.0% | |
| CCTAACTCAAGGGATTGATT+AGG | - | chr1_1:13754803-13754822 | None:intergenic | 40.0% | |
| CCTAATCAATCCCTTGAGTT+AGG | + | chr1_1:13754800-13754819 | Msa0009420:intron | 40.0% | |
| CACAGCAACATGTGTCAATT+AGG | + | chr1_1:13755096-13755115 | Msa0009420:intron | 40.0% | |
| ! | AAGAACAAGGGTGACGATTT+TGG | - | chr1_1:13755289-13755308 | None:intergenic | 40.0% |
| CAGTGAGGATGAGTTTCACA+GGG | - | chr1_1:13751683-13751702 | None:intergenic | 45.0% | |
| TCAGTGAGGATGAGTTTCAC+AGG | - | chr1_1:13751684-13751703 | None:intergenic | 45.0% | |
| CCGGAGAGATAAGGCTTAAA+AGG | - | chr1_1:13751798-13751817 | None:intergenic | 45.0% | |
| GCAGAAATTCCGGAGAGATA+AGG | - | chr1_1:13751807-13751826 | None:intergenic | 45.0% | |
| CAAAGTTGTGTTACCTGCTG+TGG | - | chr1_1:13752130-13752149 | None:intergenic | 45.0% | |
| CAGTGGAAAATGGAAACGAG+GGG | + | chr1_1:13752327-13752346 | Msa0009420:intron | 45.0% | |
| TGAGGTTGGAGATTCACGAT+TGG | - | chr1_1:13752562-13752581 | None:intergenic | 45.0% | |
| GTTCAATCAGTGGTTTCCTC+TGG | + | chr1_1:13752590-13752609 | Msa0009420:CDS | 45.0% | |
| GATCAAGAGCGATGTAGCAA+CGG | - | chr1_1:13752767-13752786 | None:intergenic | 45.0% | |
| TAGCGAGCTTCCTTTGATCT+TGG | + | chr1_1:13753058-13753077 | Msa0009420:intron | 45.0% | |
| TTCTTTCTTCTCTGCAGCTG+AGG | + | chr1_1:13753165-13753184 | Msa0009420:CDS | 45.0% | |
| AGTGAAGAGGGTTTGAAGAG+AGG | - | chr1_1:13753221-13753240 | None:intergenic | 45.0% | |
| GAGAGAAAGGTCAAATCCAG+AGG | + | chr1_1:13753715-13753734 | Msa0009420:CDS | 45.0% | |
| !! | ACAATGTTGAGGCTTGTTGC+TGG | + | chr1_1:13753746-13753765 | Msa0009420:CDS | 45.0% |
| !! | CAATGTTGAGGCTTGTTGCT+GGG | + | chr1_1:13753747-13753766 | Msa0009420:CDS | 45.0% |
| TACTAATGCTGGTGGAACCA+TGG | + | chr1_1:13753814-13753833 | Msa0009420:CDS | 45.0% | |
| GATGATGAGAAGAGGATGTG+AGG | + | chr1_1:13754140-13754159 | Msa0009420:intron | 45.0% | |
| TGTGAGGGTTTGGAAGTGAT+TGG | + | chr1_1:13754156-13754175 | Msa0009420:intron | 45.0% | |
| !! | TGCTTGGCTTGATTTGGTTG+TGG | + | chr1_1:13754315-13754334 | Msa0009420:CDS | 45.0% |
| TTGCCACTAGGCAGTAGATT+TGG | + | chr1_1:13754614-13754633 | Msa0009420:intron | 45.0% | |
| GACCAATTAGGGGAACTTAG+AGG | - | chr1_1:13754723-13754742 | None:intergenic | 45.0% | |
| AGGTGCAGTAGACCAATTAG+GGG | - | chr1_1:13754733-13754752 | None:intergenic | 45.0% | |
| AGAAGAGGGTCCTAACTCAA+GGG | - | chr1_1:13754813-13754832 | None:intergenic | 45.0% | |
| AAGAAGAGGGTCCTAACTCA+AGG | - | chr1_1:13754814-13754833 | None:intergenic | 45.0% | |
| GGGGCTGTAGTTTAAGAAGA+GGG | - | chr1_1:13754827-13754846 | None:intergenic | 45.0% | |
| AGGGGCTGTAGTTTAAGAAG+AGG | - | chr1_1:13754828-13754847 | None:intergenic | 45.0% | |
| ACTACAGCCCCTAATTCCTT+AGG | + | chr1_1:13754836-13754855 | Msa0009420:intron | 45.0% | |
| TCGGTATAAGTCGAAAGCCA+TGG | + | chr1_1:13754960-13754979 | Msa0009420:intron | 45.0% | |
| GAACAAATGACCACTGACCA+TGG | - | chr1_1:13754980-13754999 | None:intergenic | 45.0% | |
| !!! | CGATTTTGAGACATCGGAGA+CGG | - | chr1_1:13755255-13755274 | None:intergenic | 45.0% |
| ATGACAACCTCCCTGTATGA+GGG | - | chr1_1:13755396-13755415 | None:intergenic | 45.0% | |
| AATGACAACCTCCCTGTATG+AGG | - | chr1_1:13755397-13755416 | None:intergenic | 45.0% | |
| TCGCTTCAAAAATCGCAGCA+CGG | + | chr1_1:13755417-13755436 | Msa0009420:CDS | 45.0% | |
| !! | TTCACAGGGACTGGTTGAGT+AGG | - | chr1_1:13751669-13751688 | None:intergenic | 50.0% |
| AGGATGAGTTTCACAGGGAC+TGG | - | chr1_1:13751678-13751697 | None:intergenic | 50.0% | |
| ACGAGGGGAAAAAAATGCGG+TGG | + | chr1_1:13752342-13752361 | Msa0009420:intron | 50.0% | |
| CAGTGGTGATAACTGCCTGA+TGG | + | chr1_1:13752410-13752429 | Msa0009420:intron | 50.0% | |
| !! | GGTGAGCTTTGGAGGTTTCA+CGG | - | chr1_1:13752530-13752549 | None:intergenic | 50.0% |
| TTGAACTTGGACGGTGAGGT+TGG | - | chr1_1:13752576-13752595 | None:intergenic | 50.0% | |
| CTGATTGAACTTGGACGGTG+AGG | - | chr1_1:13752580-13752599 | None:intergenic | 50.0% | |
| CACCGTCCAAGTTCAATCAG+TGG | + | chr1_1:13752580-13752599 | Msa0009420:CDS | 50.0% | |
| AGAGAGAGAGAGCTTACCAG+AGG | - | chr1_1:13752609-13752628 | None:intergenic | 50.0% | |
| ! | TCAATCAGTGATGGAGAGGG+TGG | + | chr1_1:13752697-13752716 | Msa0009420:intron | 50.0% |
| GAGCGATGTAGCAACGGTAA+GGG | - | chr1_1:13752761-13752780 | None:intergenic | 50.0% | |
| AGAGCGATGTAGCAACGGTA+AGG | - | chr1_1:13752762-13752781 | None:intergenic | 50.0% | |
| TGGAATCAGCATACAGGGCA+TGG | + | chr1_1:13753681-13753700 | Msa0009420:CDS | 50.0% | |
| GAGAAGAGGATGTGAGGGTT+TGG | + | chr1_1:13754146-13754165 | Msa0009420:intron | 50.0% | |
| GGGGAACTTAGAGGATTCGA+CGG | - | chr1_1:13754714-13754733 | None:intergenic | 50.0% | |
| ACAGCCCCTAATTCCTTAGG+TGG | + | chr1_1:13754839-13754858 | Msa0009420:intron | 50.0% | |
| AAGTCGAAAGCCATGGTCAG+TGG | + | chr1_1:13754967-13754986 | Msa0009420:intron | 50.0% | |
| TCCCTGTATGAGGGAAATCG+CGG | - | chr1_1:13755387-13755406 | None:intergenic | 50.0% | |
| ATCGCAGCACGGCTTGAAAT+TGG | + | chr1_1:13755428-13755447 | Msa0009420:CDS | 50.0% | |
| ! | GCTTAGACGGTGAGCTTTGG+AGG | - | chr1_1:13752538-13752557 | None:intergenic | 55.0% |
| GGAGCTTAGACGGTGAGCTT+TGG | - | chr1_1:13752541-13752560 | None:intergenic | 55.0% | |
| ! | GTGATGGAGAGGGTGGAATC+TGG | + | chr1_1:13752704-13752723 | Msa0009420:intron | 55.0% |
| ! | TGGCTTGCAGATCCTGCGAT+TGG | + | chr1_1:13752986-13753005 | Msa0009420:CDS | 55.0% |
| CTCTGCAGCTGAGGAAGTTC+AGG | + | chr1_1:13753174-13753193 | Msa0009420:CDS | 55.0% | |
| GACATCGGAGACGGCTAGAA+GGG | - | chr1_1:13755246-13755265 | None:intergenic | 55.0% | |
| AGACATCGGAGACGGCTAGA+AGG | - | chr1_1:13755247-13755266 | None:intergenic | 55.0% | |
| !!! | CGGTGCGATTTTGACGGGTT+AGG | - | chr1_1:13755345-13755364 | None:intergenic | 55.0% |
| ! | AAGGCGCGGTGCGATTTTGA+CGG | - | chr1_1:13755351-13755370 | None:intergenic | 55.0% |
| TCGCACCGCGCCTTGTATAA+TGG | + | chr1_1:13755357-13755376 | Msa0009420:CDS | 55.0% | |
| GCACGCCATTATACAAGGCG+CGG | - | chr1_1:13755365-13755384 | None:intergenic | 55.0% | |
| TCGCGGCACGCCATTATACA+AGG | - | chr1_1:13755370-13755389 | None:intergenic | 55.0% | |
| TGCCGCGATTTCCCTCATAC+AGG | + | chr1_1:13755382-13755401 | Msa0009420:CDS | 55.0% | |
| GCCGCGATTTCCCTCATACA+GGG | + | chr1_1:13755383-13755402 | Msa0009420:CDS | 55.0% | |
| GCGATTTCCCTCATACAGGG+AGG | + | chr1_1:13755386-13755405 | Msa0009420:CDS | 55.0% | |
| AGCACGGCTTGAAATTGGCG+TGG | + | chr1_1:13755433-13755452 | Msa0009420:CDS | 55.0% | |
| !! | AGGCGCGGTGCGATTTTGAC+GGG | - | chr1_1:13755350-13755369 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 13751540 | 13755509 | 13751540 | ID=Msa0009420;Name=Msa0009420 |
| chr1_1 | mRNA | 13751540 | 13755509 | 13751540 | ID=Msa0009420-mRNA-1;Parent=Msa0009420;Name=Msa0009420-mRNA-1;_AED=0.70;_eAED=0.70;_QI=0|0|0|0.28|1|1|7|0|363 |
| chr1_1 | exon | 13751540 | 13751863 | 13751540 | ID=Msa0009420-mRNA-1:exon:5229;Parent=Msa0009420-mRNA-1 |
| chr1_1 | exon | 13752516 | 13752611 | 13752516 | ID=Msa0009420-mRNA-1:exon:5230;Parent=Msa0009420-mRNA-1 |
| chr1_1 | exon | 13752959 | 13753051 | 13752959 | ID=Msa0009420-mRNA-1:exon:5231;Parent=Msa0009420-mRNA-1 |
| chr1_1 | exon | 13753127 | 13753209 | 13753127 | ID=Msa0009420-mRNA-1:exon:5232;Parent=Msa0009420-mRNA-1 |
| chr1_1 | exon | 13753679 | 13753840 | 13753679 | ID=Msa0009420-mRNA-1:exon:5233;Parent=Msa0009420-mRNA-1 |
| chr1_1 | exon | 13754201 | 13754336 | 13754201 | ID=Msa0009420-mRNA-1:exon:5234;Parent=Msa0009420-mRNA-1 |
| chr1_1 | exon | 13755312 | 13755509 | 13755312 | ID=Msa0009420-mRNA-1:exon:5235;Parent=Msa0009420-mRNA-1 |
| chr1_1 | CDS | 13751540 | 13751863 | 13751540 | ID=Msa0009420-mRNA-1:cds;Parent=Msa0009420-mRNA-1 |
| chr1_1 | CDS | 13752516 | 13752611 | 13752516 | ID=Msa0009420-mRNA-1:cds;Parent=Msa0009420-mRNA-1 |
| chr1_1 | CDS | 13752959 | 13753051 | 13752959 | ID=Msa0009420-mRNA-1:cds;Parent=Msa0009420-mRNA-1 |
| chr1_1 | CDS | 13753127 | 13753209 | 13753127 | ID=Msa0009420-mRNA-1:cds;Parent=Msa0009420-mRNA-1 |
| chr1_1 | CDS | 13753679 | 13753840 | 13753679 | ID=Msa0009420-mRNA-1:cds;Parent=Msa0009420-mRNA-1 |
| chr1_1 | CDS | 13754201 | 13754336 | 13754201 | ID=Msa0009420-mRNA-1:cds;Parent=Msa0009420-mRNA-1 |
| chr1_1 | CDS | 13755312 | 13755509 | 13755312 | ID=Msa0009420-mRNA-1:cds;Parent=Msa0009420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
