Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186170 | XP_003627756.1 | 93.271 | 431 | 29 | 0 | 26 | 456 | 1 | 431 | 0.0 | 845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186170 | sp|Q9SXD5|GSXL3_ARATH | 52.235 | 425 | 195 | 3 | 29 | 445 | 13 | 437 | 5.17e-156 | 452 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0095940 | Msa1186170 | 0.804450 | 2.147975e-49 | -8.615850e-47 |
| Msa0658190 | Msa1186170 | 0.807993 | 3.852184e-50 | -8.615850e-47 |
| Msa0709140 | Msa1186170 | 0.805788 | 1.127172e-49 | -8.615850e-47 |
| Msa0833270 | Msa1186170 | 0.800071 | 1.711491e-48 | -8.615850e-47 |
| Msa0139680 | Msa1186170 | 0.803567 | 3.278182e-49 | -8.615850e-47 |
| Msa0387040 | Msa1186170 | 0.811168 | 8.012810e-51 | -8.615850e-47 |
| Msa1059710 | Msa1186170 | 0.815222 | 1.032349e-51 | -8.615850e-47 |
| Msa1072880 | Msa1186170 | 0.802431 | 5.627486e-49 | -8.615850e-47 |
| Msa0335080 | Msa1186170 | 0.825831 | 3.781793e-54 | -8.615850e-47 |
| Msa1186170 | Msa1281690 | 0.837975 | 3.785046e-57 | -8.615850e-47 |
| Msa1186170 | Msa1307530 | 0.807885 | 4.061475e-50 | -8.615850e-47 |
| Msa1186170 | Msa1320860 | 0.824724 | 6.912509e-54 | -8.615850e-47 |
| Msa1186170 | Msa1395110 | 0.800671 | 1.291821e-48 | -8.615850e-47 |
| Msa0517270 | Msa1186170 | 0.828084 | 1.094249e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186170 | MtrunA17_Chr8g0352481 | 93.271 | 431 | 29 | 0 | 26 | 456 | 1 | 431 | 0.0 | 845 |
| Msa1186170 | MtrunA17_Chr8g0352461 | 86.343 | 432 | 58 | 1 | 26 | 456 | 1 | 432 | 0.0 | 777 |
| Msa1186170 | MtrunA17_Chr5g0399001 | 50.000 | 458 | 214 | 6 | 6 | 451 | 6 | 460 | 5.30e-151 | 437 |
| Msa1186170 | MtrunA17_Chr3g0091441 | 41.761 | 443 | 234 | 9 | 29 | 456 | 13 | 446 | 2.37e-112 | 338 |
| Msa1186170 | MtrunA17_Chr3g0139441 | 27.143 | 210 | 123 | 6 | 31 | 236 | 41 | 224 | 4.53e-16 | 80.1 |
| Msa1186170 | MtrunA17_Chr2g0304651 | 26.877 | 253 | 127 | 8 | 28 | 246 | 4 | 232 | 1.00e-15 | 79.3 |
| Msa1186170 | MtrunA17_Chr2g0304721 | 26.877 | 253 | 127 | 8 | 28 | 246 | 4 | 232 | 2.86e-15 | 78.2 |
| Msa1186170 | MtrunA17_Chr7g0268621 | 26.168 | 214 | 125 | 5 | 29 | 236 | 6 | 192 | 7.14e-15 | 76.3 |
| Msa1186170 | MtrunA17_Chr2g0305211 | 25.820 | 244 | 123 | 8 | 29 | 238 | 5 | 224 | 8.70e-15 | 76.6 |
| Msa1186170 | MtrunA17_Chr2g0305231 | 25.820 | 244 | 123 | 8 | 29 | 238 | 5 | 224 | 8.70e-15 | 76.6 |
| Msa1186170 | MtrunA17_Chr1g0148801 | 23.558 | 208 | 129 | 6 | 31 | 236 | 18 | 197 | 5.09e-14 | 73.6 |
| Msa1186170 | MtrunA17_Chr2g0301661 | 27.830 | 212 | 101 | 7 | 24 | 208 | 9 | 195 | 7.66e-14 | 73.6 |
| Msa1186170 | MtrunA17_Chr2g0301471 | 27.404 | 208 | 99 | 6 | 28 | 208 | 13 | 195 | 1.22e-13 | 72.8 |
| Msa1186170 | MtrunA17_Chr1g0182991 | 24.413 | 213 | 124 | 5 | 31 | 236 | 27 | 209 | 1.88e-13 | 72.0 |
| Msa1186170 | MtrunA17_Chr5g0412881 | 25.359 | 209 | 130 | 4 | 29 | 235 | 6 | 190 | 5.53e-13 | 70.1 |
| Msa1186170 | MtrunA17_Chr7g0268611 | 23.830 | 235 | 145 | 5 | 28 | 255 | 7 | 214 | 1.58e-12 | 68.9 |
| Msa1186170 | MtrunA17_Chr8g0350371 | 23.111 | 225 | 146 | 5 | 29 | 251 | 6 | 205 | 9.50e-12 | 66.6 |
| Msa1186170 | MtrunA17_Chr6g0485621 | 24.883 | 213 | 127 | 5 | 31 | 236 | 34 | 220 | 7.01e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1186170 | AT1G62620.1 | 52.235 | 425 | 195 | 3 | 29 | 445 | 13 | 437 | 5.26e-157 | 452 |
| Msa1186170 | AT1G63370.1 | 51.765 | 425 | 197 | 3 | 29 | 445 | 13 | 437 | 3.60e-155 | 448 |
| Msa1186170 | AT1G12140.1 | 51.756 | 427 | 201 | 2 | 24 | 445 | 8 | 434 | 1.97e-154 | 446 |
| Msa1186170 | AT1G12140.3 | 51.756 | 427 | 201 | 2 | 24 | 445 | 8 | 434 | 1.97e-154 | 446 |
| Msa1186170 | AT1G12200.1 | 52.546 | 432 | 193 | 4 | 25 | 445 | 10 | 440 | 1.89e-153 | 444 |
| Msa1186170 | AT1G12140.2 | 51.288 | 427 | 201 | 3 | 24 | 445 | 8 | 432 | 5.28e-151 | 437 |
| Msa1186170 | AT1G62600.1 | 51.522 | 427 | 197 | 3 | 29 | 445 | 13 | 439 | 6.36e-150 | 434 |
| Msa1186170 | AT1G12160.1 | 49.203 | 439 | 197 | 6 | 29 | 444 | 12 | 447 | 4.24e-146 | 425 |
| Msa1186170 | AT1G62580.2 | 51.282 | 429 | 200 | 4 | 25 | 445 | 10 | 437 | 7.81e-145 | 422 |
| Msa1186170 | AT1G62620.2 | 54.400 | 375 | 163 | 3 | 29 | 395 | 13 | 387 | 1.40e-143 | 416 |
| Msa1186170 | AT1G62560.1 | 47.344 | 433 | 218 | 5 | 20 | 444 | 4 | 434 | 1.68e-143 | 419 |
| Msa1186170 | AT1G65860.1 | 48.694 | 421 | 211 | 3 | 29 | 444 | 13 | 433 | 7.03e-143 | 417 |
| Msa1186170 | AT1G62540.1 | 50.000 | 426 | 208 | 3 | 24 | 444 | 8 | 433 | 6.25e-142 | 414 |
| Msa1186170 | AT1G12130.1 | 49.231 | 455 | 199 | 8 | 24 | 453 | 8 | 455 | 3.43e-140 | 410 |
| Msa1186170 | AT1G62570.1 | 49.074 | 432 | 211 | 4 | 20 | 444 | 4 | 433 | 1.05e-137 | 404 |
| Msa1186170 | AT1G62540.2 | 47.228 | 451 | 208 | 4 | 24 | 444 | 8 | 458 | 1.32e-137 | 404 |
| Msa1186170 | AT1G62580.1 | 47.835 | 462 | 199 | 7 | 25 | 445 | 10 | 470 | 1.69e-136 | 402 |
| Msa1186170 | AT1G62600.2 | 53.316 | 377 | 166 | 3 | 29 | 395 | 13 | 389 | 3.21e-136 | 397 |
| Msa1186170 | AT1G63340.1 | 47.754 | 423 | 176 | 4 | 29 | 445 | 14 | 397 | 4.71e-132 | 388 |
| Msa1186170 | AT1G62560.2 | 49.227 | 388 | 187 | 5 | 20 | 399 | 4 | 389 | 6.13e-132 | 387 |
| Msa1186170 | AT1G62540.3 | 47.653 | 426 | 200 | 5 | 24 | 444 | 8 | 415 | 1.42e-129 | 382 |
| Msa1186170 | AT5G61290.1 | 45.012 | 431 | 217 | 5 | 29 | 444 | 16 | 441 | 1.61e-122 | 365 |
| Msa1186170 | AT1G63370.2 | 55.108 | 323 | 137 | 3 | 29 | 343 | 13 | 335 | 1.85e-122 | 360 |
| Msa1186170 | AT1G12200.2 | 55.963 | 327 | 133 | 3 | 25 | 341 | 10 | 335 | 5.91e-119 | 353 |
| Msa1186170 | AT5G07800.1 | 42.824 | 432 | 229 | 7 | 28 | 444 | 15 | 443 | 2.72e-114 | 344 |
| Msa1186170 | AT1G62580.3 | 53.731 | 335 | 137 | 3 | 25 | 341 | 10 | 344 | 2.81e-110 | 330 |
| Msa1186170 | AT1G63390.1 | 57.343 | 143 | 53 | 2 | 29 | 163 | 13 | 155 | 3.02e-40 | 142 |
| Msa1186170 | AT5G45180.1 | 24.638 | 483 | 239 | 21 | 25 | 414 | 9 | 459 | 5.24e-19 | 89.7 |
| Msa1186170 | AT4G13260.2 | 23.077 | 208 | 134 | 4 | 31 | 236 | 30 | 213 | 1.23e-12 | 68.9 |
| Msa1186170 | AT4G13260.1 | 23.077 | 208 | 134 | 4 | 31 | 236 | 30 | 213 | 2.94e-12 | 68.6 |
| Msa1186170 | AT5G11320.2 | 22.330 | 206 | 132 | 4 | 31 | 236 | 19 | 196 | 8.97e-12 | 66.6 |
| Msa1186170 | AT5G11320.1 | 22.330 | 206 | 132 | 4 | 31 | 236 | 19 | 196 | 2.85e-11 | 65.5 |
Find 128 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAATATAATTTGAAGTATT+TGG | 0.122925 | 8_1:-24207298 | Msa1186170:three_prime_UTR |
| CTACAGGTTGTGATCTTAAT+TGG | 0.129363 | 8_1:-24208889 | Msa1186170:intron |
| CTGTGATCCGAGAACGTTTC+CGG | 0.221154 | 8_1:-24209839 | Msa1186170:CDS |
| GAATGGATCTGCTTCTTAAA+AGG | 0.249161 | 8_1:-24207368 | Msa1186170:exon |
| CCAAGACATGCTTTGGTTCC+TGG | 0.277481 | 8_1:-24209622 | Msa1186170:CDS |
| GCTCCATGGCTCTCTTTCAT+TGG | 0.284807 | 8_1:-24208311 | Msa1186170:CDS |
| GACGAATTTGCAGGTGAGTT+TGG | 0.300404 | 8_1:-24209790 | Msa1186170:CDS |
| AAGCAAAGCGTTGACTGTTT+TGG | 0.315749 | 8_1:+24210142 | None:intergenic |
| ACATTCAATACGTCCGTTTC+AGG | 0.322656 | 8_1:-24208041 | Msa1186170:intron |
| ATTCCTTTCCTCGAAACTAA+TGG | 0.337402 | 8_1:-24208398 | Msa1186170:CDS |
| ATGAATGGGATGATAACTAT+TGG | 0.345252 | 8_1:-24207405 | Msa1186170:CDS |
| GCAGGTGAGTTTGGAATTCA+TGG | 0.347435 | 8_1:-24209781 | Msa1186170:CDS |
| GAAGCGGTTGTTGTGTGTTC+TGG | 0.352052 | 8_1:-24209658 | Msa1186170:CDS |
| TTGAGAGGAAAGGGAAGGAT+TGG | 0.366991 | 8_1:-24209726 | Msa1186170:CDS |
| GTACCCTGTACAGTGAATTA+TGG | 0.368004 | 8_1:+24208554 | None:intergenic |
| TAAAGACATATATCGCATTA+TGG | 0.370628 | 8_1:-24208092 | Msa1186170:CDS |
| CACCACCTCTGTTTCAAATC+GGG | 0.375170 | 8_1:+24209753 | None:intergenic |
| TCACCACCTCTGTTTCAAAT+CGG | 0.375247 | 8_1:+24209752 | None:intergenic |
| CTGTGAACTGTTTCTCTGGT+TGG | 0.381244 | 8_1:+24209943 | None:intergenic |
| TCCTCATTCTTTCAAAGATC+AGG | 0.381424 | 8_1:-24209551 | Msa1186170:intron |
| AACTTCAGACCCTTCAATAG+TGG | 0.382124 | 8_1:+24208787 | None:intergenic |
| TGTAGAACCAAGACATGCTT+TGG | 0.386407 | 8_1:-24209629 | Msa1186170:CDS |
| TCGTCCCTCCAATCTTCTAA+TGG | 0.387213 | 8_1:+24207481 | None:intergenic |
| GGTTGCCTCCATTAGAAGAT+TGG | 0.387547 | 8_1:-24207489 | Msa1186170:CDS |
| GCCTTCCTGTTGCAGCTCCT+TGG | 0.389404 | 8_1:+24210056 | None:intergenic |
| TGTGAACTGTTTCTCTGGTT+GGG | 0.399952 | 8_1:+24209944 | None:intergenic |
| TGTGATCCGAGAACGTTTCC+GGG | 0.400644 | 8_1:-24209838 | Msa1186170:CDS |
| TCATGACCCGGAAACGTTCT+CGG | 0.402567 | 8_1:+24209832 | None:intergenic |
| AGACCCTTCAATAGTGGATT+CGG | 0.405139 | 8_1:+24208793 | None:intergenic |
| GGATTGGGTGGTTGAGTCTA+GGG | 0.407340 | 8_1:-24209710 | Msa1186170:CDS |
| CGCCGCCAAGGAGCTGCAAC+AGG | 0.407589 | 8_1:-24210061 | Msa1186170:CDS |
| TAGGACACATAAATAAAGAT+TGG | 0.412729 | 8_1:-24207185 | Msa1186170:three_prime_UTR |
| TGGTGAAAGTTGAGAGGAAA+GGG | 0.417022 | 8_1:-24209735 | Msa1186170:CDS |
| GGCGACGAGGCCGGAGACTC+CGG | 0.417512 | 8_1:+24210080 | None:intergenic |
| AGGATTGGGTGGTTGAGTCT+AGG | 0.420831 | 8_1:-24209711 | Msa1186170:CDS |
| TTCCTCCTTCGCTGGCTCCA+TGG | 0.424941 | 8_1:-24208325 | Msa1186170:CDS |
| GACATCTCAAAAGATATTGC+AGG | 0.428767 | 8_1:-24208847 | Msa1186170:CDS |
| TTGGAGGGACGATATGTTGA+TGG | 0.428898 | 8_1:-24207470 | Msa1186170:CDS |
| TATACAATAATTTCAACCTT+AGG | 0.432533 | 8_1:-24207204 | Msa1186170:three_prime_UTR |
| TACAGGTTGTGATCTTAATT+GGG | 0.433986 | 8_1:-24208888 | Msa1186170:intron |
| ATCTTTATTTATGTGTCCTA+AGG | 0.437812 | 8_1:+24207188 | None:intergenic |
| CAATGGCTAGTGGCACAGAT+TGG | 0.438330 | 8_1:-24207511 | Msa1186170:CDS |
| AAATCTTCCAAGGCAAATCA+TGG | 0.439066 | 8_1:-24209896 | Msa1186170:CDS |
| CTCCTTGGCGGCGACGAGGC+CGG | 0.439440 | 8_1:+24210071 | None:intergenic |
| TTACTATTCCATTAGTTTCG+AGG | 0.445234 | 8_1:+24208390 | None:intergenic |
| GTGATCGGCGCCGGAGTCTC+CGG | 0.449086 | 8_1:-24210090 | Msa1186170:CDS |
| GGCTTGGTTGCCTTTGAAGA+TGG | 0.455524 | 8_1:-24208597 | Msa1186170:CDS |
| ACTGCTGTGAACTGTTTCTC+TGG | 0.461299 | 8_1:+24209939 | None:intergenic |
| TGAGAGGAAAGGGAAGGATT+GGG | 0.467571 | 8_1:-24209725 | Msa1186170:CDS |
| ATTAAATGTATATATGAAGA+TGG | 0.470339 | 8_1:-24208618 | Msa1186170:CDS |
| AGGATTCTCGCTTGGACAAA+GGG | 0.470355 | 8_1:+24209860 | None:intergenic |
| ACAAATGCACACACCTGAAA+CGG | 0.470413 | 8_1:+24208028 | None:intergenic |
| TTTAATGCTGATTGTTACAT+TGG | 0.471408 | 8_1:-24207330 | Msa1186170:three_prime_UTR |
| CGGATCACAGGATTCTCGCT+TGG | 0.472811 | 8_1:+24209852 | None:intergenic |
| CCTGGTATTGAAAACTTTCG+TGG | 0.473125 | 8_1:-24209604 | Msa1186170:CDS |
| AAGAATCCCATGATTTGCCT+TGG | 0.478861 | 8_1:+24209889 | None:intergenic |
| ATGGTTAAAGTTGCAGTGAT+CGG | 0.483813 | 8_1:-24210105 | Msa1186170:CDS |
| AGCAGATCCATTCTGAATGA+TGG | 0.487281 | 8_1:+24207378 | None:intergenic |
| CAGGATTCTCGCTTGGACAA+AGG | 0.488933 | 8_1:+24209859 | None:intergenic |
| AATGGCTAGTGGCACAGATT+GGG | 0.490181 | 8_1:-24207510 | Msa1186170:CDS |
| CTCCGGCCTCGTCGCCGCCA+AGG | 0.493718 | 8_1:-24210073 | Msa1186170:CDS |
| ACTATTGAAGGGTCTGAAGT+TGG | 0.499791 | 8_1:-24208785 | Msa1186170:CDS |
| ATTCCATTAGTTTCGAGGAA+AGG | 0.505621 | 8_1:+24208395 | None:intergenic |
| TGAAATGTATAGAGATGAAT+GGG | 0.506026 | 8_1:-24207419 | Msa1186170:CDS |
| TGAATGGGATGATAACTATT+GGG | 0.513303 | 8_1:-24207404 | Msa1186170:CDS |
| TTAATGCTGATTGTTACATT+GGG | 0.513347 | 8_1:-24207329 | Msa1186170:three_prime_UTR |
| CGAAGCATTTCTTCATGACC+CGG | 0.517432 | 8_1:+24209820 | None:intergenic |
| TTCCTGTTGCAGCTCCTTGG+CGG | 0.520483 | 8_1:+24210059 | None:intergenic |
| CTGGTATTGAAAACTTTCGT+GGG | 0.521262 | 8_1:-24209603 | Msa1186170:CDS |
| AGCCATGGAGCCAGCGAAGG+AGG | 0.524115 | 8_1:+24208323 | None:intergenic |
| ACGGTCGTTCTTAACGTACA+TGG | 0.527350 | 8_1:+24210205 | None:intergenic |
| ACAACCGCGTCGGAGGAACC+TGG | 0.530565 | 8_1:-24210008 | Msa1186170:CDS |
| GATGCCATAATTCACTGTAC+AGG | 0.531205 | 8_1:-24208558 | Msa1186170:CDS |
| CAGGTGAGTTTGGAATTCAT+GGG | 0.536690 | 8_1:-24209780 | Msa1186170:CDS |
| TTTGAGATGTCAAATGAACT+AGG | 0.538090 | 8_1:+24208859 | None:intergenic |
| ATGAAATGTATAGAGATGAA+TGG | 0.538896 | 8_1:-24207420 | Msa1186170:CDS |
| TGCATCATTTCTTCTTCAGT+AGG | 0.544617 | 8_1:+24208121 | None:intergenic |
| TGCCTCCATTAGAAGATTGG+AGG | 0.544767 | 8_1:-24207486 | Msa1186170:CDS |
| TATTGAATGTGTGTAATGCT+TGG | 0.547519 | 8_1:+24208054 | None:intergenic |
| CGGAAACGTTCTCGGATCAC+AGG | 0.547744 | 8_1:+24209840 | None:intergenic |
| ATTGAATGTGTGTAATGCTT+GGG | 0.549862 | 8_1:+24208055 | None:intergenic |
| CCAGGAACCAAAGCATGTCT+TGG | 0.554091 | 8_1:+24209622 | None:intergenic |
| CTATTGAAGATAATCGCGTT+GGG | 0.554898 | 8_1:-24208367 | Msa1186170:CDS |
| GTTGTGATCTTAATTGGGCT+AGG | 0.557914 | 8_1:-24208883 | Msa1186170:CDS |
| TGGGATGCCATCATTCAGAA+TGG | 0.558777 | 8_1:-24207385 | Msa1186170:CDS |
| ACCTGATCTTTGAAAGAATG+AGG | 0.559248 | 8_1:+24209550 | None:intergenic |
| TAAAACTCTTGCAACCCACT+TGG | 0.561189 | 8_1:+24208162 | None:intergenic |
| AAAGTTGCAGTGATCGGCGC+CGG | 0.565896 | 8_1:-24210099 | Msa1186170:CDS |
| ACTATTGAAGATAATCGCGT+TGG | 0.568519 | 8_1:-24208368 | Msa1186170:CDS |
| AGTAGAGAATCCATCTTCAA+AGG | 0.568751 | 8_1:+24208587 | None:intergenic |
| GTGGTGAAAGTTGAGAGGAA+AGG | 0.568850 | 8_1:-24209736 | Msa1186170:CDS |
| CTTTACGCACAAATCTTCCA+AGG | 0.568859 | 8_1:-24209906 | Msa1186170:CDS |
| AAAACCGAATCCACTATTGA+AGG | 0.571520 | 8_1:-24208797 | Msa1186170:CDS |
| GAGAGCCATGGAGCCAGCGA+AGG | 0.571530 | 8_1:+24208320 | None:intergenic |
| CAGAGGTGGTGAAAGTTGAG+AGG | 0.575528 | 8_1:-24209741 | Msa1186170:CDS |
| GCCAAGGAGCTGCAACAGGA+AGG | 0.576117 | 8_1:-24210057 | Msa1186170:CDS |
| TCTCGAAAACCATGACGTTG+TGG | 0.578765 | 8_1:+24210034 | None:intergenic |
| AATCTTCCAAGGCAAATCAT+GGG | 0.585719 | 8_1:-24209895 | Msa1186170:CDS |
| AGATATTGCAGGAGTTGCAA+AGG | 0.586378 | 8_1:-24208836 | Msa1186170:CDS |
| GAGGAAAGGGAAGGATTGGG+TGG | 0.587608 | 8_1:-24209722 | Msa1186170:CDS |
| GATTGGGTGGTTGAGTCTAG+GGG | 0.592862 | 8_1:-24209709 | Msa1186170:CDS |
| ATGTATATATGAAGATGGCT+TGG | 0.596098 | 8_1:-24208613 | Msa1186170:CDS |
| CAATATATGTTTCCATACTG+TGG | 0.598006 | 8_1:-24208752 | Msa1186170:intron |
| GCCTCCATTAGAAGATTGGA+GGG | 0.599594 | 8_1:-24207485 | Msa1186170:CDS |
| CTGGTTGGGTCTATACTAAG+AGG | 0.600004 | 8_1:+24209958 | None:intergenic |
| GAAGATTTGTGCGTAAAGAG+TGG | 0.607471 | 8_1:+24209911 | None:intergenic |
| GCAGCTCCTTGGCGGCGACG+AGG | 0.607854 | 8_1:+24210067 | None:intergenic |
| TGGGTCTATACTAAGAGGAT+CGG | 0.608316 | 8_1:+24209963 | None:intergenic |
| AAACCGAATCCACTATTGAA+GGG | 0.609940 | 8_1:-24208796 | Msa1186170:CDS |
| TGGGTGGTTGAGTCTAGGGG+AGG | 0.613176 | 8_1:-24209706 | Msa1186170:CDS |
| GAAAGTTGAGAGGAAAGGGA+AGG | 0.618934 | 8_1:-24209731 | Msa1186170:CDS |
| AATTGAGTTACAAGCCAAGT+GGG | 0.620693 | 8_1:-24208176 | Msa1186170:CDS |
| GAGTCAAGAAGTGTTTGAAG+CGG | 0.623772 | 8_1:-24209674 | Msa1186170:CDS |
| ACAGGAAGGCCACAACGTCA+TGG | 0.627608 | 8_1:-24210043 | Msa1186170:CDS |
| TAGTTTCGAGGAAAGGAATG+TGG | 0.628193 | 8_1:+24208402 | None:intergenic |
| TCCCTCCAATCTTCTAATGG+AGG | 0.629387 | 8_1:+24207484 | None:intergenic |
| TGCTTGTCAACTAATCACGA+TGG | 0.636656 | 8_1:-24210124 | Msa1186170:CDS |
| GAGAAGAACAACCGCGTCGG+AGG | 0.637401 | 8_1:-24210015 | Msa1186170:CDS |
| TTCGAGAAGAACAACCGCGT+CGG | 0.637502 | 8_1:-24210018 | Msa1186170:CDS |
| AAACCAATGAAAGAGAGCCA+TGG | 0.638563 | 8_1:+24208308 | None:intergenic |
| GACCCGATTTGAAACAGAGG+TGG | 0.641010 | 8_1:-24209755 | Msa1186170:CDS |
| ATGCCATAATTCACTGTACA+GGG | 0.655356 | 8_1:-24208557 | Msa1186170:intron |
| AGACATATATCGCATTATGG+AGG | 0.656754 | 8_1:-24208089 | Msa1186170:CDS |
| TAATTGAGTTACAAGCCAAG+TGG | 0.658830 | 8_1:-24208177 | Msa1186170:CDS |
| TGACTACAAACAATGGCTAG+TGG | 0.662928 | 8_1:-24207521 | Msa1186170:CDS |
| GTCAGGCTGACTACAAACAA+TGG | 0.679900 | 8_1:-24207528 | Msa1186170:intron |
| ATATCCAGGTTCCTCCGACG+CGG | 0.696857 | 8_1:+24210004 | None:intergenic |
| GTTGACCCGATTTGAAACAG+AGG | 0.712999 | 8_1:-24209758 | Msa1186170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATATTGTTATGAA+GGG | + | chr8_1:24207190-24207209 | None:intergenic | 10.0% |
| !!! | AAATATTTAGATATAGATTT+TGG | - | chr8_1:24207967-24207986 | Msa1186170:intron | 10.0% |
| !! | ATCTAAAAAAAAATTAAACA+GGG | + | chr8_1:24208787-24208806 | None:intergenic | 10.0% |
| !! | AATCTAAAAAAAAATTAAAC+AGG | + | chr8_1:24208788-24208807 | None:intergenic | 10.0% |
| !! | GAAAAAATATATTGTTATGA+AGG | + | chr8_1:24207191-24207210 | None:intergenic | 15.0% |
| !!! | ATTAATTTTCCAAACAAAAT+AGG | + | chr8_1:24208501-24208520 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTGGAAAATTAAT+TGG | - | chr8_1:24208501-24208520 | Msa1186170:intron | 15.0% |
| !! | ATTAAATGTATATATGAAGA+TGG | - | chr8_1:24208805-24208824 | Msa1186170:CDS | 15.0% |
| !! | TAAAAGAAAAAATATGTTGA+AGG | + | chr8_1:24208918-24208937 | None:intergenic | 15.0% |
| !! | ATATAAACAAATATTGTAAC+AGG | - | chr8_1:24208990-24209009 | Msa1186170:intron | 15.0% |
| !! | TATAAGTAAATAGTTAAACT+CGG | + | chr8_1:24209865-24209884 | None:intergenic | 15.0% |
| !!! | AGAATATAATTTGAAGTATT+TGG | - | chr8_1:24210125-24210144 | Msa1186170:CDS | 15.0% |
| !!! | GATTTCAAAGTTTTCAAATT+TGG | + | chr8_1:24207912-24207931 | None:intergenic | 20.0% |
| !!! | TTTGAAAACTTTGAAATCAT+TGG | - | chr8_1:24207914-24207933 | Msa1186170:intron | 20.0% |
| !! | TTGAAATCATTGGAAATAAA+TGG | - | chr8_1:24207924-24207943 | Msa1186170:intron | 20.0% |
| !!! | CTATGAAATTAATCATTTTG+AGG | - | chr8_1:24208966-24208985 | Msa1186170:intron | 20.0% |
| !!! | TCAATTAACAGATTTAAGAT+AGG | - | chr8_1:24209456-24209475 | Msa1186170:intron | 20.0% |
| !! | ATAAGTAAATAGTTAAACTC+GGG | + | chr8_1:24209864-24209883 | None:intergenic | 20.0% |
| !! | TATACAATAATTTCAACCTT+AGG | - | chr8_1:24210219-24210238 | Msa1186170:exon | 20.0% |
| ! | AAATGGATATCAATGTAAGT+AGG | - | chr8_1:24207941-24207960 | Msa1186170:intron | 25.0% |
| ! | ATTGGACAATTAAGATTGTA+CGG | - | chr8_1:24208012-24208031 | Msa1186170:intron | 25.0% |
| !!! | GTGTTGTTTTTACAAAATCA+CGG | - | chr8_1:24208050-24208069 | Msa1186170:CDS | 25.0% |
| ! | AGACTAAAATGATTAACACA+TGG | + | chr8_1:24208135-24208154 | None:intergenic | 25.0% |
| !! | AGGAGAAAGTTCATTATTTT+TGG | - | chr8_1:24208257-24208276 | Msa1186170:intron | 25.0% |
| !! | TGTTTAATGCCTATTTTGTT+TGG | - | chr8_1:24208489-24208508 | Msa1186170:intron | 25.0% |
| !! | ATTTTTAACATACCACAGTA+TGG | + | chr8_1:24208686-24208705 | None:intergenic | 25.0% |
| ! | TTACAATAAAAATCGTTTCC+TGG | + | chr8_1:24209229-24209248 | None:intergenic | 25.0% |
| ! | TAAAGACATATATCGCATTA+TGG | - | chr8_1:24209331-24209350 | Msa1186170:intron | 25.0% |
| ! | ATCAAATGAAATGTATAGTG+AGG | + | chr8_1:24209428-24209447 | None:intergenic | 25.0% |
| !! | AAGCATTGTTCAATTGTTAA+AGG | - | chr8_1:24209527-24209546 | Msa1186170:intron | 25.0% |
| ! | TAATTTCCTAGTAATTGCAT+TGG | + | chr8_1:24209575-24209594 | None:intergenic | 25.0% |
| ! | TTCATAGGCAAATTAGTATT+TGG | - | chr8_1:24209614-24209633 | Msa1186170:CDS | 25.0% |
| !!! | GTTACTAGAGAATGTTTTAA+AGG | - | chr8_1:24209712-24209731 | Msa1186170:CDS | 25.0% |
| ! | ACTTATAAAATTACTCTGTC+AGG | - | chr8_1:24209878-24209897 | Msa1186170:CDS | 25.0% |
| ! | ATGAAATGTATAGAGATGAA+TGG | - | chr8_1:24210003-24210022 | Msa1186170:CDS | 25.0% |
| ! | TGAAATGTATAGAGATGAAT+GGG | - | chr8_1:24210004-24210023 | Msa1186170:CDS | 25.0% |
| !! | TTTAATGCTGATTGTTACAT+TGG | - | chr8_1:24210093-24210112 | Msa1186170:CDS | 25.0% |
| !! | TTAATGCTGATTGTTACATT+GGG | - | chr8_1:24210094-24210113 | Msa1186170:CDS | 25.0% |
| !! | ATCTTTATTTATGTGTCCTA+AGG | + | chr8_1:24210238-24210257 | None:intergenic | 25.0% |
| !! | TTTTTCTTTTGAAGGAGGAA+CGG | + | chr8_1:24207240-24207259 | None:intergenic | 30.0% |
| ! | ACACAGTGTTTTTCTTTTGA+AGG | + | chr8_1:24207248-24207267 | None:intergenic | 30.0% |
| !!! | TGAAGAAATGCTTCGTTTTT+TGG | - | chr8_1:24207611-24207630 | Msa1186170:intron | 30.0% |
| ACGAAAACACGATTTAATTC+TGG | - | chr8_1:24208103-24208122 | Msa1186170:CDS | 30.0% | |
| !! | GTGTTAATCATTTTAGTCTC+TGG | - | chr8_1:24208136-24208155 | Msa1186170:CDS | 30.0% |
| AATGAACTTTCTCCTATGAA+TGG | + | chr8_1:24208252-24208271 | None:intergenic | 30.0% | |
| ! | AGACTTTTGATGTGTTATCA+GGG | + | chr8_1:24208300-24208319 | None:intergenic | 30.0% |
| ! | TAGACTTTTGATGTGTTATC+AGG | + | chr8_1:24208301-24208320 | None:intergenic | 30.0% |
| ! | AATTGGTAATTACTACCTAC+AGG | - | chr8_1:24208518-24208537 | Msa1186170:intron | 30.0% |
| TACAGGTTGTGATCTTAATT+GGG | - | chr8_1:24208535-24208554 | Msa1186170:intron | 30.0% | |
| ! | TTTGAGATGTCAAATGAACT+AGG | + | chr8_1:24208567-24208586 | None:intergenic | 30.0% |
| CAATATATGTTTCCATACTG+TGG | - | chr8_1:24208671-24208690 | Msa1186170:intron | 30.0% | |
| CAAAGCAATATCTAAGTGTA+TGG | + | chr8_1:24208734-24208753 | None:intergenic | 30.0% | |
| ATGTATATATGAAGATGGCT+TGG | - | chr8_1:24208810-24208829 | Msa1186170:CDS | 30.0% | |
| ! | TTACTATTCCATTAGTTTCG+AGG | + | chr8_1:24209036-24209055 | None:intergenic | 30.0% |
| GGAAAAACATGTTTGTATAG+TGG | + | chr8_1:24209082-24209101 | None:intergenic | 30.0% | |
| ATTGAATGTGTGTAATGCTT+GGG | + | chr8_1:24209371-24209390 | None:intergenic | 30.0% | |
| TATTGAATGTGTGTAATGCT+TGG | + | chr8_1:24209372-24209391 | None:intergenic | 30.0% | |
| AATCTCTAGATTGTACGAAT+TGG | + | chr8_1:24209766-24209785 | None:intergenic | 30.0% | |
| !!! | AATCTAGAGATTGTTTTGAC+CGG | - | chr8_1:24209774-24209793 | Msa1186170:CDS | 30.0% |
| ATCGTTAAAGTTATAAGCAC+CGG | + | chr8_1:24209796-24209815 | None:intergenic | 30.0% | |
| AACTCGGGCAAATTTATAAT+CGG | + | chr8_1:24209849-24209868 | None:intergenic | 30.0% | |
| ATGAATGGGATGATAACTAT+TGG | - | chr8_1:24210018-24210037 | Msa1186170:CDS | 30.0% | |
| TGAATGGGATGATAACTATT+GGG | - | chr8_1:24210019-24210038 | Msa1186170:CDS | 30.0% | |
| !! | CAGTGTTTTTCTTTTGAAGG+AGG | + | chr8_1:24207245-24207264 | None:intergenic | 35.0% |
| ATGGTTAAAGTTGCAGTGAT+CGG | - | chr8_1:24207318-24207337 | Msa1186170:three_prime_UTR | 35.0% | |
| AAATCTTCCAAGGCAAATCA+TGG | - | chr8_1:24207527-24207546 | Msa1186170:intron | 35.0% | |
| AATCTTCCAAGGCAAATCAT+GGG | - | chr8_1:24207528-24207547 | Msa1186170:intron | 35.0% | |
| ! | CTGGTATTGAAAACTTTCGT+GGG | - | chr8_1:24207820-24207839 | Msa1186170:intron | 35.0% |
| TCCTCATTCTTTCAAAGATC+AGG | - | chr8_1:24207872-24207891 | Msa1186170:intron | 35.0% | |
| ! | ACCTGATCTTTGAAAGAATG+AGG | + | chr8_1:24207876-24207895 | None:intergenic | 35.0% |
| AATGTTGATGTGTGTTCTCA+TGG | - | chr8_1:24208204-24208223 | Msa1186170:intron | 35.0% | |
| GGTTTAGTAGTCGGTAAAAT+TGG | + | chr8_1:24208231-24208250 | None:intergenic | 35.0% | |
| CCTATGAATGGTTTAGTAGT+CGG | + | chr8_1:24208240-24208259 | None:intergenic | 35.0% | |
| AGAGACCAAAATGATGGTTT+GGG | - | chr8_1:24208432-24208451 | Msa1186170:intron | 35.0% | |
| ! | TATAGCCCAAACCATCATTT+TGG | + | chr8_1:24208440-24208459 | None:intergenic | 35.0% |
| CAATTAAGATCACAACCTGT+AGG | + | chr8_1:24208536-24208555 | None:intergenic | 35.0% | |
| CTACAGGTTGTGATCTTAAT+TGG | - | chr8_1:24208534-24208553 | Msa1186170:intron | 35.0% | |
| GACATCTCAAAAGATATTGC+AGG | - | chr8_1:24208576-24208595 | Msa1186170:CDS | 35.0% | |
| AAAACCGAATCCACTATTGA+AGG | - | chr8_1:24208626-24208645 | Msa1186170:intron | 35.0% | |
| AAACCGAATCCACTATTGAA+GGG | - | chr8_1:24208627-24208646 | Msa1186170:intron | 35.0% | |
| AGTAGAGAATCCATCTTCAA+AGG | + | chr8_1:24208839-24208858 | None:intergenic | 35.0% | |
| ATGCCATAATTCACTGTACA+GGG | - | chr8_1:24208866-24208885 | Msa1186170:CDS | 35.0% | |
| ATTCCTTTCCTCGAAACTAA+TGG | - | chr8_1:24209025-24209044 | Msa1186170:intron | 35.0% | |
| ! | ATTCCATTAGTTTCGAGGAA+AGG | + | chr8_1:24209031-24209050 | None:intergenic | 35.0% |
| ACTATTGAAGATAATCGCGT+TGG | - | chr8_1:24209055-24209074 | Msa1186170:intron | 35.0% | |
| CTATTGAAGATAATCGCGTT+GGG | - | chr8_1:24209056-24209075 | Msa1186170:intron | 35.0% | |
| TAATTGATTAAGACTTGCCG+TGG | - | chr8_1:24209203-24209222 | Msa1186170:intron | 35.0% | |
| TAATTGAGTTACAAGCCAAG+TGG | - | chr8_1:24209246-24209265 | Msa1186170:intron | 35.0% | |
| AATTGAGTTACAAGCCAAGT+GGG | - | chr8_1:24209247-24209266 | Msa1186170:intron | 35.0% | |
| TGCATCATTTCTTCTTCAGT+AGG | + | chr8_1:24209305-24209324 | None:intergenic | 35.0% | |
| AGACATATATCGCATTATGG+AGG | - | chr8_1:24209334-24209353 | Msa1186170:intron | 35.0% | |
| CTCTAACCAATGCAATTACT+AGG | - | chr8_1:24209566-24209585 | Msa1186170:CDS | 35.0% | |
| ! | TTACTAGGAAATTAGTCTCC+AGG | - | chr8_1:24209581-24209600 | Msa1186170:CDS | 35.0% |
| CGATGTGACACATTAATATG+CGG | + | chr8_1:24209674-24209693 | None:intergenic | 35.0% | |
| CGCATATTAATGTGTCACAT+CGG | - | chr8_1:24209672-24209691 | Msa1186170:CDS | 35.0% | |
| !!! | GTTGATGGAGTGTTTTAAGA+AGG | - | chr8_1:24209968-24209987 | Msa1186170:CDS | 35.0% |
| GAATGGATCTGCTTCTTAAA+AGG | - | chr8_1:24210055-24210074 | Msa1186170:CDS | 35.0% | |
| !!! | GACTGTTTTGGTCAAAGTTC+AGG | + | chr8_1:24207272-24207291 | None:intergenic | 40.0% |
| !!! | AAGCAAAGCGTTGACTGTTT+TGG | + | chr8_1:24207284-24207303 | None:intergenic | 40.0% |
| TGCTTGTCAACTAATCACGA+TGG | - | chr8_1:24207299-24207318 | Msa1186170:three_prime_UTR | 40.0% | |
| !!! | TGTTTTTGGGTCGTATATCC+AGG | + | chr8_1:24207436-24207455 | None:intergenic | 40.0% |
| TGGGTCTATACTAAGAGGAT+CGG | + | chr8_1:24207463-24207482 | None:intergenic | 40.0% | |
| ! | TGTGAACTGTTTCTCTGGTT+GGG | + | chr8_1:24207482-24207501 | None:intergenic | 40.0% |
| GAAGATTTGTGCGTAAAGAG+TGG | + | chr8_1:24207515-24207534 | None:intergenic | 40.0% | |
| CTTTACGCACAAATCTTCCA+AGG | - | chr8_1:24207517-24207536 | Msa1186170:CDS | 40.0% | |
| ! | AAGAATCCCATGATTTGCCT+TGG | + | chr8_1:24207537-24207556 | None:intergenic | 40.0% |
| !!! | CGTTTTTTGGACGAATTTGC+AGG | - | chr8_1:24207624-24207643 | Msa1186170:intron | 40.0% |
| ! | CAGGTGAGTTTGGAATTCAT+GGG | - | chr8_1:24207643-24207662 | Msa1186170:intron | 40.0% |
| TCACCACCTCTGTTTCAAAT+CGG | + | chr8_1:24207674-24207693 | None:intergenic | 40.0% | |
| TGGTGAAAGTTGAGAGGAAA+GGG | - | chr8_1:24207688-24207707 | Msa1186170:intron | 40.0% | |
| !! | GAGTCAAGAAGTGTTTGAAG+CGG | - | chr8_1:24207749-24207768 | Msa1186170:intron | 40.0% |
| TGTAGAACCAAGACATGCTT+TGG | - | chr8_1:24207794-24207813 | Msa1186170:intron | 40.0% | |
| ! | CCACGAAAGTTTTCAATACC+AGG | + | chr8_1:24207822-24207841 | None:intergenic | 40.0% |
| ! | CCTGGTATTGAAAACTTTCG+TGG | - | chr8_1:24207819-24207838 | Msa1186170:intron | 40.0% |
| CCGACTACTAAACCATTCAT+AGG | - | chr8_1:24208237-24208256 | Msa1186170:intron | 40.0% | |
| GACGATGTGTACTAATGAGA+AGG | + | chr8_1:24208329-24208348 | None:intergenic | 40.0% | |
| ACTTCCAGAGACCAAAATGA+TGG | - | chr8_1:24208426-24208445 | Msa1186170:intron | 40.0% | |
| !! | CAAACCATCATTTTGGTCTC+TGG | + | chr8_1:24208433-24208452 | None:intergenic | 40.0% |
| CAGAGACCAAAATGATGGTT+TGG | - | chr8_1:24208431-24208450 | Msa1186170:intron | 40.0% | |
| GTTGTGATCTTAATTGGGCT+AGG | - | chr8_1:24208540-24208559 | Msa1186170:intron | 40.0% | |
| AGATATTGCAGGAGTTGCAA+AGG | - | chr8_1:24208587-24208606 | Msa1186170:CDS | 40.0% | |
| !! | AGACCCTTCAATAGTGGATT+CGG | + | chr8_1:24208633-24208652 | None:intergenic | 40.0% |
| AACTTCAGACCCTTCAATAG+TGG | + | chr8_1:24208639-24208658 | None:intergenic | 40.0% | |
| ! | ACTATTGAAGGGTCTGAAGT+TGG | - | chr8_1:24208638-24208657 | Msa1186170:intron | 40.0% |
| GATGCCATAATTCACTGTAC+AGG | - | chr8_1:24208865-24208884 | Msa1186170:CDS | 40.0% | |
| GTACCCTGTACAGTGAATTA+TGG | + | chr8_1:24208872-24208891 | None:intergenic | 40.0% | |
| ! | AATTCACTGTACAGGGTACT+AGG | - | chr8_1:24208873-24208892 | Msa1186170:CDS | 40.0% |
| TAGTTTCGAGGAAAGGAATG+TGG | + | chr8_1:24209024-24209043 | None:intergenic | 40.0% | |
| AAACCAATGAAAGAGAGCCA+TGG | + | chr8_1:24209118-24209137 | None:intergenic | 40.0% | |
| TAAAAATCGTTTCCTGGCCA+CGG | + | chr8_1:24209223-24209242 | None:intergenic | 40.0% | |
| TAAAACTCTTGCAACCCACT+TGG | + | chr8_1:24209264-24209283 | None:intergenic | 40.0% | |
| !! | TGGGTTGCAAGAGTTTTATC+TGG | - | chr8_1:24209266-24209285 | Msa1186170:intron | 40.0% |
| ACATTCAATACGTCCGTTTC+AGG | - | chr8_1:24209382-24209401 | Msa1186170:intron | 40.0% | |
| ACAAATGCACACACCTGAAA+CGG | + | chr8_1:24209398-24209417 | None:intergenic | 40.0% | |
| CCTATGAAATGTATGTCACC+TGG | + | chr8_1:24209602-24209621 | None:intergenic | 40.0% | |
| CCAGGTGACATACATTTCAT+AGG | - | chr8_1:24209599-24209618 | Msa1186170:CDS | 40.0% | |
| TGACTACAAACAATGGCTAG+TGG | - | chr8_1:24209902-24209921 | Msa1186170:CDS | 40.0% | |
| AGCAGATCCATTCTGAATGA+TGG | + | chr8_1:24210048-24210067 | None:intergenic | 40.0% | |
| ACGGTCGTTCTTAACGTACA+TGG | + | chr8_1:24207221-24207240 | None:intergenic | 45.0% | |
| TCTCGAAAACCATGACGTTG+TGG | + | chr8_1:24207392-24207411 | None:intergenic | 45.0% | |
| !! | GAGGATCGGAGTCTGTTTTT+GGG | + | chr8_1:24207449-24207468 | None:intergenic | 45.0% |
| ! | AGAGGATCGGAGTCTGTTTT+TGG | + | chr8_1:24207450-24207469 | None:intergenic | 45.0% |
| CTGGTTGGGTCTATACTAAG+AGG | + | chr8_1:24207468-24207487 | None:intergenic | 45.0% | |
| ! | CTGTGAACTGTTTCTCTGGT+TGG | + | chr8_1:24207483-24207502 | None:intergenic | 45.0% |
| ! | ACTGCTGTGAACTGTTTCTC+TGG | + | chr8_1:24207487-24207506 | None:intergenic | 45.0% |
| AGGATTCTCGCTTGGACAAA+GGG | + | chr8_1:24207566-24207585 | None:intergenic | 45.0% | |
| ! | CGAAGCATTTCTTCATGACC+CGG | + | chr8_1:24207606-24207625 | None:intergenic | 45.0% |
| GACGAATTTGCAGGTGAGTT+TGG | - | chr8_1:24207633-24207652 | Msa1186170:intron | 45.0% | |
| ! | GCAGGTGAGTTTGGAATTCA+TGG | - | chr8_1:24207642-24207661 | Msa1186170:intron | 45.0% |
| ! | GTTGACCCGATTTGAAACAG+AGG | - | chr8_1:24207665-24207684 | Msa1186170:intron | 45.0% |
| CACCACCTCTGTTTCAAATC+GGG | + | chr8_1:24207673-24207692 | None:intergenic | 45.0% | |
| GTGGTGAAAGTTGAGAGGAA+AGG | - | chr8_1:24207687-24207706 | Msa1186170:intron | 45.0% | |
| GAAAGTTGAGAGGAAAGGGA+AGG | - | chr8_1:24207692-24207711 | Msa1186170:intron | 45.0% | |
| TTGAGAGGAAAGGGAAGGAT+TGG | - | chr8_1:24207697-24207716 | Msa1186170:intron | 45.0% | |
| TGAGAGGAAAGGGAAGGATT+GGG | - | chr8_1:24207698-24207717 | Msa1186170:intron | 45.0% | |
| ! | ACATGTTTTTCCTCCTTCGC+TGG | - | chr8_1:24209090-24209109 | Msa1186170:intron | 45.0% |
| GTCAGGCTGACTACAAACAA+TGG | - | chr8_1:24209895-24209914 | Msa1186170:CDS | 45.0% | |
| AATGGCTAGTGGCACAGATT+GGG | - | chr8_1:24209913-24209932 | Msa1186170:CDS | 45.0% | |
| GGTTGCCTCCATTAGAAGAT+TGG | - | chr8_1:24209934-24209953 | Msa1186170:CDS | 45.0% | |
| TGCCTCCATTAGAAGATTGG+AGG | - | chr8_1:24209937-24209956 | Msa1186170:CDS | 45.0% | |
| GCCTCCATTAGAAGATTGGA+GGG | - | chr8_1:24209938-24209957 | Msa1186170:CDS | 45.0% | |
| TCCCTCCAATCTTCTAATGG+AGG | + | chr8_1:24209942-24209961 | None:intergenic | 45.0% | |
| TCGTCCCTCCAATCTTCTAA+TGG | + | chr8_1:24209945-24209964 | None:intergenic | 45.0% | |
| TTGGAGGGACGATATGTTGA+TGG | - | chr8_1:24209953-24209972 | Msa1186170:CDS | 45.0% | |
| TGGGATGCCATCATTCAGAA+TGG | - | chr8_1:24210038-24210057 | Msa1186170:CDS | 45.0% | |
| !! | TAAGTAATTAAAAAAAAAAT+TGG | - | chr8_1:24207994-24208013 | Msa1186170:intron | 5.0% |
| TTCGAGAAGAACAACCGCGT+CGG | - | chr8_1:24207405-24207424 | Msa1186170:CDS | 50.0% | |
| CAGGATTCTCGCTTGGACAA+AGG | + | chr8_1:24207567-24207586 | None:intergenic | 50.0% | |
| CTGTGATCCGAGAACGTTTC+CGG | - | chr8_1:24207584-24207603 | Msa1186170:intron | 50.0% | |
| TGTGATCCGAGAACGTTTCC+GGG | - | chr8_1:24207585-24207604 | Msa1186170:intron | 50.0% | |
| TCATGACCCGGAAACGTTCT+CGG | + | chr8_1:24207594-24207613 | None:intergenic | 50.0% | |
| ! | GACCCGATTTGAAACAGAGG+TGG | - | chr8_1:24207668-24207687 | Msa1186170:intron | 50.0% |
| CAGAGGTGGTGAAAGTTGAG+AGG | - | chr8_1:24207682-24207701 | Msa1186170:intron | 50.0% | |
| AGGATTGGGTGGTTGAGTCT+AGG | - | chr8_1:24207712-24207731 | Msa1186170:intron | 50.0% | |
| GGATTGGGTGGTTGAGTCTA+GGG | - | chr8_1:24207713-24207732 | Msa1186170:intron | 50.0% | |
| GATTGGGTGGTTGAGTCTAG+GGG | - | chr8_1:24207714-24207733 | Msa1186170:intron | 50.0% | |
| GAAGCGGTTGTTGTGTGTTC+TGG | - | chr8_1:24207765-24207784 | Msa1186170:intron | 50.0% | |
| CCAGGAACCAAAGCATGTCT+TGG | + | chr8_1:24207804-24207823 | None:intergenic | 50.0% | |
| ! | CCAAGACATGCTTTGGTTCC+TGG | - | chr8_1:24207801-24207820 | Msa1186170:intron | 50.0% |
| GTCTCTGGCGTTAACGAATG+AGG | - | chr8_1:24208151-24208170 | Msa1186170:CDS | 50.0% | |
| ! | GGCTTGGTTGCCTTTGAAGA+TGG | - | chr8_1:24208826-24208845 | Msa1186170:CDS | 50.0% |
| GCTCCATGGCTCTCTTTCAT+TGG | - | chr8_1:24209112-24209131 | Msa1186170:intron | 50.0% | |
| CAATGGCTAGTGGCACAGAT+TGG | - | chr8_1:24209912-24209931 | Msa1186170:CDS | 50.0% | |
| AAAGTTGCAGTGATCGGCGC+CGG | - | chr8_1:24207324-24207343 | Msa1186170:three_prime_UTR | 55.0% | |
| TTCCTGTTGCAGCTCCTTGG+CGG | + | chr8_1:24207367-24207386 | None:intergenic | 55.0% | |
| ACAGGAAGGCCACAACGTCA+TGG | - | chr8_1:24207380-24207399 | Msa1186170:CDS | 55.0% | |
| ATATCCAGGTTCCTCCGACG+CGG | + | chr8_1:24207422-24207441 | None:intergenic | 55.0% | |
| CGGATCACAGGATTCTCGCT+TGG | + | chr8_1:24207574-24207593 | None:intergenic | 55.0% | |
| CGGAAACGTTCTCGGATCAC+AGG | + | chr8_1:24207586-24207605 | None:intergenic | 55.0% | |
| GAGGAAAGGGAAGGATTGGG+TGG | - | chr8_1:24207701-24207720 | Msa1186170:intron | 55.0% | |
| GATTAAGACTTGCCGTGGCC+AGG | - | chr8_1:24209208-24209227 | Msa1186170:intron | 55.0% | |
| GCCAAGGAGCTGCAACAGGA+AGG | - | chr8_1:24207366-24207385 | Msa1186170:exon | 60.0% | |
| GCCTTCCTGTTGCAGCTCCT+TGG | + | chr8_1:24207370-24207389 | None:intergenic | 60.0% | |
| GAGAAGAACAACCGCGTCGG+AGG | - | chr8_1:24207408-24207427 | Msa1186170:CDS | 60.0% | |
| TGGGTGGTTGAGTCTAGGGG+AGG | - | chr8_1:24207717-24207736 | Msa1186170:intron | 60.0% | |
| !! | TTCCTCCTTCGCTGGCTCCA+TGG | - | chr8_1:24209098-24209117 | Msa1186170:intron | 60.0% |
| ACAACCGCGTCGGAGGAACC+TGG | - | chr8_1:24207415-24207434 | Msa1186170:CDS | 65.0% | |
| AGCCATGGAGCCAGCGAAGG+AGG | + | chr8_1:24209103-24209122 | None:intergenic | 65.0% | |
| GAGAGCCATGGAGCCAGCGA+AGG | + | chr8_1:24209106-24209125 | None:intergenic | 65.0% | |
| ! | GTGATCGGCGCCGGAGTCTC+CGG | - | chr8_1:24207333-24207352 | Msa1186170:three_prime_UTR | 70.0% |
| CGCCGCCAAGGAGCTGCAAC+AGG | - | chr8_1:24207362-24207381 | Msa1186170:exon | 70.0% | |
| GGCGACGAGGCCGGAGACTC+CGG | + | chr8_1:24207346-24207365 | None:intergenic | 75.0% | |
| CTCCTTGGCGGCGACGAGGC+CGG | + | chr8_1:24207355-24207374 | None:intergenic | 75.0% | |
| GCAGCTCCTTGGCGGCGACG+AGG | + | chr8_1:24207359-24207378 | None:intergenic | 75.0% | |
| ! | CTCCGGCCTCGTCGCCGCCA+AGG | - | chr8_1:24207350-24207369 | Msa1186170:three_prime_UTR | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 24207185 | 24210260 | 24207185 | ID=Msa1186170;Name=Msa1186170 |
| chr8_1 | mRNA | 24207185 | 24210260 | 24207185 | ID=Msa1186170-mRNA-1;Parent=Msa1186170;Name=Msa1186170-mRNA-1;_AED=0.37;_eAED=0.37;_QI=35|1|1|1|0.83|0.71|7|187|456 |
| chr8_1 | exon | 24207185 | 24207545 | 24207185 | ID=Msa1186170-mRNA-1:exon:8859;Parent=Msa1186170-mRNA-1 |
| chr8_1 | exon | 24208042 | 24208215 | 24208042 | ID=Msa1186170-mRNA-1:exon:8858;Parent=Msa1186170-mRNA-1 |
| chr8_1 | exon | 24208298 | 24208433 | 24208298 | ID=Msa1186170-mRNA-1:exon:8857;Parent=Msa1186170-mRNA-1 |
| chr8_1 | exon | 24208558 | 24208640 | 24208558 | ID=Msa1186170-mRNA-1:exon:8856;Parent=Msa1186170-mRNA-1 |
| chr8_1 | exon | 24208753 | 24208905 | 24208753 | ID=Msa1186170-mRNA-1:exon:8855;Parent=Msa1186170-mRNA-1 |
| chr8_1 | exon | 24209552 | 24210191 | 24209552 | ID=Msa1186170-mRNA-1:exon:8854;Parent=Msa1186170-mRNA-1 |
| chr8_1 | exon | 24210215 | 24210260 | 24210215 | ID=Msa1186170-mRNA-1:exon:8853;Parent=Msa1186170-mRNA-1 |
| chr8_1 | five_prime_UTR | 24210226 | 24210260 | 24210226 | ID=Msa1186170-mRNA-1:five_prime_utr;Parent=Msa1186170-mRNA-1 |
| chr8_1 | CDS | 24210215 | 24210225 | 24210215 | ID=Msa1186170-mRNA-1:cds;Parent=Msa1186170-mRNA-1 |
| chr8_1 | CDS | 24209552 | 24210191 | 24209552 | ID=Msa1186170-mRNA-1:cds;Parent=Msa1186170-mRNA-1 |
| chr8_1 | CDS | 24208753 | 24208905 | 24208753 | ID=Msa1186170-mRNA-1:cds;Parent=Msa1186170-mRNA-1 |
| chr8_1 | CDS | 24208558 | 24208640 | 24208558 | ID=Msa1186170-mRNA-1:cds;Parent=Msa1186170-mRNA-1 |
| chr8_1 | CDS | 24208298 | 24208433 | 24208298 | ID=Msa1186170-mRNA-1:cds;Parent=Msa1186170-mRNA-1 |
| chr8_1 | CDS | 24208042 | 24208215 | 24208042 | ID=Msa1186170-mRNA-1:cds;Parent=Msa1186170-mRNA-1 |
| chr8_1 | CDS | 24207372 | 24207545 | 24207372 | ID=Msa1186170-mRNA-1:cds;Parent=Msa1186170-mRNA-1 |
| chr8_1 | three_prime_UTR | 24207185 | 24207371 | 24207185 | ID=Msa1186170-mRNA-1:three_prime_utr;Parent=Msa1186170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
