Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320860 | sp|A8MRX0|GSOX5_ARATH | 53.066 | 424 | 187 | 3 | 2 | 413 | 11 | 434 | 8.63e-155 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320860 | G7LEJ7 | 87.935 | 431 | 45 | 1 | 1 | 424 | 1 | 431 | 0.0 | 783 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0009640 | Msa1320860 | 0.824344 | 8.490883e-54 | -8.615850e-47 |
| Msa0051960 | Msa1320860 | 0.808705 | 2.715916e-50 | -8.615850e-47 |
| Msa0084710 | Msa1320860 | 0.802915 | 4.473232e-49 | -8.615850e-47 |
| Msa0094710 | Msa1320860 | 0.811446 | 6.972195e-51 | -8.615850e-47 |
| Msa0095940 | Msa1320860 | 0.813964 | 1.960210e-51 | -8.615850e-47 |
| Msa0101960 | Msa1320860 | 0.817423 | 3.323464e-52 | -8.615850e-47 |
| Msa0613420 | Msa1320860 | 0.821055 | 4.947811e-53 | -8.615850e-47 |
| Msa0641130 | Msa1320860 | 0.811210 | 7.845416e-51 | -8.615850e-47 |
| Msa0715670 | Msa1320860 | 0.810744 | 9.899963e-51 | -8.615850e-47 |
| Msa0833270 | Msa1320860 | 0.820914 | 5.333399e-53 | -8.615850e-47 |
| Msa1256060 | Msa1320860 | 0.829249 | 5.721779e-55 | -8.615850e-47 |
| Msa1281660 | Msa1320860 | 0.840806 | 6.965705e-58 | -8.615850e-47 |
| Msa1281690 | Msa1320860 | 0.838348 | 3.033107e-57 | -8.615850e-47 |
| Msa1320860 | Msa1407880 | 0.804915 | 1.717671e-49 | -8.615850e-47 |
| Msa1011250 | Msa1320860 | 0.811493 | 6.811137e-51 | -8.615850e-47 |
| Msa1186170 | Msa1320860 | 0.824724 | 6.912509e-54 | -8.615850e-47 |
| Msa1208990 | Msa1320860 | 0.813215 | 2.864562e-51 | -8.615850e-47 |
| Msa0517270 | Msa1320860 | 0.866052 | 3.778154e-65 | -8.615850e-47 |
| Msa0592650 | Msa1320860 | 0.805992 | 1.021230e-49 | -8.615850e-47 |
| Msa0600590 | Msa1320860 | 0.805490 | 1.302076e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320860 | MtrunA17_Chr8g0352481 | 87.935 | 431 | 45 | 1 | 1 | 424 | 1 | 431 | 0.0 | 783 |
| Msa1320860 | MtrunA17_Chr8g0352461 | 83.565 | 432 | 63 | 2 | 1 | 424 | 1 | 432 | 0.0 | 741 |
| Msa1320860 | MtrunA17_Chr5g0399001 | 50.461 | 434 | 191 | 7 | 4 | 419 | 33 | 460 | 1.31e-143 | 417 |
| Msa1320860 | MtrunA17_Chr3g0091441 | 41.798 | 445 | 226 | 10 | 3 | 424 | 12 | 446 | 3.35e-111 | 334 |
| Msa1320860 | MtrunA17_Chr3g0139441 | 25.962 | 208 | 128 | 4 | 6 | 211 | 41 | 224 | 1.09e-17 | 84.7 |
| Msa1320860 | MtrunA17_Chr7g0268621 | 24.014 | 279 | 168 | 7 | 4 | 271 | 6 | 251 | 1.36e-15 | 78.2 |
| Msa1320860 | MtrunA17_Chr2g0304651 | 26.545 | 275 | 136 | 10 | 3 | 243 | 4 | 246 | 1.02e-14 | 75.9 |
| Msa1320860 | MtrunA17_Chr1g0182991 | 23.333 | 210 | 130 | 4 | 6 | 211 | 27 | 209 | 3.86e-14 | 73.9 |
| Msa1320860 | MtrunA17_Chr2g0301471 | 27.404 | 208 | 99 | 6 | 3 | 183 | 13 | 195 | 7.79e-14 | 73.2 |
| Msa1320860 | MtrunA17_Chr2g0301661 | 28.846 | 208 | 96 | 7 | 3 | 183 | 13 | 195 | 1.11e-13 | 72.8 |
| Msa1320860 | MtrunA17_Chr5g0412881 | 25.359 | 209 | 130 | 4 | 4 | 210 | 6 | 190 | 1.22e-13 | 72.0 |
| Msa1320860 | MtrunA17_Chr1g0148801 | 23.923 | 209 | 127 | 7 | 6 | 211 | 18 | 197 | 1.37e-13 | 72.0 |
| Msa1320860 | MtrunA17_Chr2g0304721 | 26.087 | 253 | 129 | 7 | 3 | 221 | 4 | 232 | 2.17e-13 | 72.0 |
| Msa1320860 | MtrunA17_Chr2g0305211 | 24.590 | 244 | 126 | 8 | 4 | 213 | 5 | 224 | 4.44e-13 | 70.9 |
| Msa1320860 | MtrunA17_Chr2g0305231 | 24.590 | 244 | 126 | 8 | 4 | 213 | 5 | 224 | 4.44e-13 | 70.9 |
| Msa1320860 | MtrunA17_Chr7g0268611 | 24.255 | 235 | 144 | 5 | 3 | 230 | 7 | 214 | 4.61e-13 | 70.5 |
| Msa1320860 | MtrunA17_Chr1g0147221 | 23.671 | 207 | 133 | 4 | 6 | 211 | 44 | 226 | 1.42e-12 | 68.9 |
| Msa1320860 | MtrunA17_Chr8g0350371 | 22.967 | 209 | 135 | 4 | 4 | 210 | 6 | 190 | 2.23e-11 | 65.1 |
| Msa1320860 | MtrunA17_Chr6g0485621 | 25.352 | 213 | 126 | 7 | 6 | 211 | 34 | 220 | 2.60e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320860 | AT1G12140.1 | 53.066 | 424 | 187 | 3 | 2 | 413 | 11 | 434 | 8.77e-156 | 448 |
| Msa1320860 | AT1G12140.3 | 53.066 | 424 | 187 | 3 | 2 | 413 | 11 | 434 | 8.77e-156 | 448 |
| Msa1320860 | AT1G62620.1 | 52.336 | 428 | 183 | 6 | 4 | 413 | 13 | 437 | 1.05e-154 | 445 |
| Msa1320860 | AT1G63370.1 | 51.869 | 428 | 185 | 6 | 4 | 413 | 13 | 437 | 3.72e-153 | 441 |
| Msa1320860 | AT1G12140.2 | 52.594 | 424 | 187 | 4 | 2 | 413 | 11 | 432 | 3.58e-152 | 439 |
| Msa1320860 | AT1G12200.1 | 51.991 | 427 | 188 | 4 | 4 | 413 | 14 | 440 | 1.20e-149 | 433 |
| Msa1320860 | AT1G65860.1 | 49.881 | 421 | 199 | 3 | 4 | 412 | 13 | 433 | 7.15e-148 | 428 |
| Msa1320860 | AT1G62560.1 | 48.815 | 422 | 203 | 4 | 4 | 412 | 13 | 434 | 1.46e-145 | 422 |
| Msa1320860 | AT1G12160.1 | 49.199 | 437 | 193 | 7 | 4 | 412 | 12 | 447 | 1.59e-145 | 422 |
| Msa1320860 | AT1G62600.1 | 51.054 | 427 | 192 | 4 | 4 | 413 | 13 | 439 | 4.74e-145 | 421 |
| Msa1320860 | AT1G62540.1 | 51.069 | 421 | 194 | 3 | 4 | 412 | 13 | 433 | 4.78e-144 | 418 |
| Msa1320860 | AT1G62570.1 | 49.881 | 421 | 199 | 3 | 4 | 412 | 13 | 433 | 1.39e-141 | 412 |
| Msa1320860 | AT1G62620.2 | 54.400 | 375 | 156 | 4 | 4 | 363 | 13 | 387 | 1.40e-141 | 410 |
| Msa1320860 | AT1G62540.2 | 48.430 | 446 | 193 | 4 | 4 | 412 | 13 | 458 | 3.53e-140 | 409 |
| Msa1320860 | AT1G62580.2 | 50.824 | 425 | 193 | 6 | 4 | 413 | 14 | 437 | 4.64e-139 | 406 |
| Msa1320860 | AT1G12130.1 | 50.333 | 451 | 183 | 10 | 4 | 421 | 13 | 455 | 2.51e-138 | 404 |
| Msa1320860 | AT1G62560.2 | 50.928 | 377 | 172 | 4 | 4 | 367 | 13 | 389 | 2.38e-134 | 391 |
| Msa1320860 | AT1G62600.2 | 53.050 | 377 | 160 | 4 | 4 | 363 | 13 | 389 | 1.85e-132 | 387 |
| Msa1320860 | AT1G62540.3 | 48.694 | 421 | 186 | 5 | 4 | 412 | 13 | 415 | 1.23e-131 | 386 |
| Msa1320860 | AT1G62580.1 | 47.380 | 458 | 192 | 9 | 4 | 413 | 14 | 470 | 1.37e-130 | 385 |
| Msa1320860 | AT1G63340.1 | 46.336 | 423 | 175 | 5 | 4 | 413 | 14 | 397 | 1.27e-126 | 373 |
| Msa1320860 | AT1G63370.2 | 55.418 | 323 | 129 | 4 | 4 | 311 | 13 | 335 | 1.55e-121 | 357 |
| Msa1320860 | AT5G61290.1 | 44.755 | 429 | 214 | 6 | 4 | 412 | 16 | 441 | 7.69e-120 | 357 |
| Msa1320860 | AT1G12200.2 | 53.593 | 334 | 138 | 4 | 4 | 320 | 14 | 347 | 4.76e-116 | 344 |
| Msa1320860 | AT5G07800.1 | 42.396 | 434 | 221 | 8 | 3 | 412 | 15 | 443 | 4.46e-110 | 332 |
| Msa1320860 | AT1G62580.3 | 52.870 | 331 | 131 | 5 | 4 | 309 | 14 | 344 | 8.16e-105 | 315 |
| Msa1320860 | AT1G63390.1 | 58.741 | 143 | 51 | 2 | 4 | 138 | 13 | 155 | 1.83e-43 | 150 |
| Msa1320860 | AT1G19250.1 | 29.046 | 241 | 115 | 8 | 3 | 211 | 12 | 228 | 1.04e-15 | 79.7 |
| Msa1320860 | AT5G11320.2 | 23.301 | 206 | 130 | 4 | 6 | 211 | 19 | 196 | 1.55e-13 | 72.0 |
| Msa1320860 | AT5G11320.1 | 23.301 | 206 | 130 | 4 | 6 | 211 | 19 | 196 | 3.90e-13 | 71.2 |
| Msa1320860 | AT5G25620.1 | 23.474 | 213 | 137 | 4 | 6 | 216 | 34 | 222 | 4.25e-13 | 70.9 |
| Msa1320860 | AT5G25620.2 | 24.038 | 208 | 132 | 4 | 6 | 211 | 34 | 217 | 5.20e-13 | 70.9 |
| Msa1320860 | AT1G04610.1 | 22.535 | 213 | 130 | 4 | 6 | 210 | 39 | 224 | 1.31e-12 | 69.7 |
| Msa1320860 | AT4G32540.1 | 24.757 | 206 | 127 | 5 | 6 | 210 | 23 | 201 | 5.78e-12 | 67.4 |
| Msa1320860 | AT4G32540.2 | 24.757 | 206 | 127 | 5 | 6 | 210 | 23 | 201 | 6.48e-12 | 67.4 |
| Msa1320860 | AT5G45180.1 | 26.984 | 252 | 126 | 12 | 3 | 221 | 12 | 238 | 2.17e-11 | 65.9 |
| Msa1320860 | AT1G48910.1 | 25.238 | 210 | 131 | 4 | 4 | 211 | 5 | 190 | 9.51e-11 | 63.5 |
Find 115 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTGGCTGATTGAACAAAT+TGG | 0.195901 | 8_4:-25702894 | Msa1320860:CDS |
| TTACTGTTCCATTTGTTTCT+AGG | 0.201456 | 8_4:+25703636 | None:intergenic |
| CTGTGATCCGAGAACGTTTC+CGG | 0.221154 | 8_4:-25705038 | Msa1320860:CDS |
| GAAGAATTTGCAGGTGAGTT+TGG | 0.241098 | 8_4:-25704989 | Msa1320860:CDS |
| ATGAATGGGATGATAATTAT+TGG | 0.261638 | 8_4:-25702788 | Msa1320860:CDS |
| TTGGAGGGACAATATGTTAT+TGG | 0.264076 | 8_4:-25702853 | Msa1320860:CDS |
| TCATTCAATTCGTCCATTTC+AGG | 0.272063 | 8_4:-25703257 | Msa1320860:intron |
| CCTGGGATTGAAAAGTTTCC+TGG | 0.300481 | 8_4:-25704803 | Msa1320860:CDS |
| CGAATGGATGGTTGAGTCTC+TGG | 0.303198 | 8_4:-25704909 | Msa1320860:CDS |
| CGCAATATGTTTCCATACTT+TGG | 0.307368 | 8_4:-25703981 | Msa1320860:intron |
| AATGAAAACGTTGACTGTTT+TGG | 0.333893 | 8_4:+25705341 | None:intergenic |
| AAGAATTTGCAGGTGAGTTT+GGG | 0.345148 | 8_4:-25704988 | Msa1320860:CDS |
| AATTGAATGAGTGTAACTTT+TGG | 0.345946 | 8_4:+25703270 | None:intergenic |
| GAAGCGGTTGTTGTTTGTTC+AGG | 0.347106 | 8_4:-25704857 | Msa1320860:CDS |
| ATACCCATCCGTTGTGGATT+CGG | 0.348540 | 8_4:+25704020 | None:intergenic |
| GTACCCTGTACAATGGATTA+TGG | 0.349883 | 8_4:+25703801 | None:intergenic |
| CACCACCTCCGTTTCAAATC+GGG | 0.359835 | 8_4:+25704952 | None:intergenic |
| GAGTGGATCAGCTTCCTAAA+AGG | 0.372189 | 8_4:-25702751 | Msa1320860:exon |
| ACAAGAGCACATACCTGAAA+TGG | 0.376748 | 8_4:+25703244 | None:intergenic |
| TCAGAATTTCATTGAAATGA+AGG | 0.380040 | 8_4:-25702823 | Msa1320860:CDS |
| CTGTGAACTGTTTCTCTGGT+TGG | 0.381244 | 8_4:+25705142 | None:intergenic |
| TCACCACCTCCGTTTCAAAT+CGG | 0.383633 | 8_4:+25704951 | None:intergenic |
| GCCTTCTTGCTGTAGCTCCT+TGG | 0.384819 | 8_4:+25705255 | None:intergenic |
| TAAAGATCTCTATCAATTCA+TGG | 0.393300 | 8_4:-25703308 | Msa1320860:CDS |
| ACAAATTGGGCTGCCTCCGC+TGG | 0.394645 | 8_4:-25702880 | Msa1320860:CDS |
| GCTCCATACCTATCTTTCAT+TGG | 0.395842 | 8_4:-25703557 | Msa1320860:CDS |
| AGCTGATCCACTCTGAATAA+TGG | 0.397927 | 8_4:+25702761 | None:intergenic |
| GGCTGCCTCCGCTGGAAGAT+TGG | 0.399813 | 8_4:-25702872 | Msa1320860:CDS |
| TGTGAACTGTTTCTCTGGTT+GGG | 0.399952 | 8_4:+25705143 | None:intergenic |
| TGTGATCCGAGAACGTTTCC+GGG | 0.400644 | 8_4:-25705037 | Msa1320860:CDS |
| TCATGACCCGGAAACGTTCT+CGG | 0.402567 | 8_4:+25705031 | None:intergenic |
| TTTAATTCTGATTGTTACAT+TGG | 0.408606 | 8_4:-25702713 | Msa1320860:three_prime_UTR |
| CCAAGAGTTAGTGTGGTTCC+TGG | 0.424399 | 8_4:-25704821 | Msa1320860:CDS |
| GTCATCGGCGCCGGAGTCTC+CGG | 0.429200 | 8_4:-25705289 | Msa1320860:CDS |
| AAATCTTCCAAGGCAAATCA+TGG | 0.439066 | 8_4:-25705095 | Msa1320860:CDS |
| GGCGACGAGGCCGGAGACTC+CGG | 0.442670 | 8_4:+25705279 | None:intergenic |
| TGCCTCCGCTGGAAGATTGG+AGG | 0.447704 | 8_4:-25702869 | Msa1320860:CDS |
| ATGTTAAGCCAATGAAAGAT+AGG | 0.454570 | 8_4:+25703549 | None:intergenic |
| GGCTTGGTTGCCTTTGAAGA+TGG | 0.455524 | 8_4:-25703844 | Msa1320860:CDS |
| ACTGCTGTGAACTGTTTCTC+TGG | 0.461299 | 8_4:+25705138 | None:intergenic |
| ACCTACTGAAGAAGAAATGA+TGG | 0.467935 | 8_4:-25703338 | Msa1320860:CDS |
| CCCAACGCGATTATCTTCAA+TGG | 0.469746 | 8_4:+25703613 | None:intergenic |
| AGGATTCTCGCTTGGACAAA+GGG | 0.470355 | 8_4:+25705059 | None:intergenic |
| GTTCCATTTGTTTCTAGGAA+AGG | 0.472076 | 8_4:+25703641 | None:intergenic |
| CGGATCACAGGATTCTCGCT+TGG | 0.472811 | 8_4:+25705051 | None:intergenic |
| ATACCTTTCCTAGAAACAAA+TGG | 0.473121 | 8_4:-25703644 | Msa1320860:CDS |
| CTCCGGCCTCGTCGCCTCCA+AGG | 0.474233 | 8_4:-25705272 | Msa1320860:CDS |
| GACATCTCAAGAGATATTGC+AGG | 0.476363 | 8_4:-25704074 | Msa1320860:CDS |
| TGAATGGGATGATAATTATT+GGG | 0.478067 | 8_4:-25702787 | Msa1320860:CDS |
| AAGAATCCCATGATTTGCCT+TGG | 0.478861 | 8_4:+25705088 | None:intergenic |
| TTAATTCTGATTGTTACATT+GGG | 0.483995 | 8_4:-25702712 | Msa1320860:three_prime_UTR |
| CAGGATTCTCGCTTGGACAA+AGG | 0.488933 | 8_4:+25705058 | None:intergenic |
| AGGAAATGTATAGAGATGAA+TGG | 0.489358 | 8_4:-25702803 | Msa1320860:CDS |
| ATGGTTAAAGTTGCAGTCAT+CGG | 0.489423 | 8_4:-25705304 | Msa1320860:CDS |
| ATTGGCTGATTGAACAAATT+GGG | 0.491048 | 8_4:-25702893 | Msa1320860:CDS |
| ACAACGGATGGGTATGAAGT+TGG | 0.491609 | 8_4:-25704012 | Msa1320860:CDS |
| TTCTTGCTGTAGCTCCTTGG+AGG | 0.498459 | 8_4:+25705258 | None:intergenic |
| TGAGTTGACCCGATTTGAAA+CGG | 0.500439 | 8_4:-25704960 | Msa1320860:CDS |
| CTCCTTGGAGGCGACGAGGC+CGG | 0.511794 | 8_4:+25705270 | None:intergenic |
| GGAAATGTATAGAGATGAAT+GGG | 0.513137 | 8_4:-25702802 | Msa1320860:CDS |
| CAAGAGTTAGTGTGGTTCCT+GGG | 0.515723 | 8_4:-25704820 | Msa1320860:CDS |
| CGAAGCATTTCTTCATGACC+CGG | 0.517432 | 8_4:+25705019 | None:intergenic |
| AATAGAGAATCCATCTTCAA+AGG | 0.527898 | 8_4:+25703834 | None:intergenic |
| CCAGGAACCACACTAACTCT+TGG | 0.529261 | 8_4:+25704821 | None:intergenic |
| GCCTCCGCTGGAAGATTGGA+GGG | 0.529866 | 8_4:-25702868 | Msa1320860:CDS |
| ACAACCGCGTCGGAGGAACC+TGG | 0.530565 | 8_4:-25705207 | Msa1320860:CDS |
| TCCTCATTCTTTCAAAGACC+AGG | 0.533239 | 8_4:-25704750 | Msa1320860:intron |
| AGATATTGCAGGAGTAGCAA+AGG | 0.533661 | 8_4:-25704063 | Msa1320860:CDS |
| ACCATTGAAGATAATCGCGT+TGG | 0.536360 | 8_4:-25703614 | Msa1320860:CDS |
| TTGAGAGGAAAGAAAACGAA+TGG | 0.543579 | 8_4:-25704925 | Msa1320860:CDS |
| CCATTGAAGATAATCGCGTT+GGG | 0.544114 | 8_4:-25703613 | Msa1320860:CDS |
| CGGAAACGTTCTCGGATCAC+AGG | 0.547744 | 8_4:+25705039 | None:intergenic |
| TCTCGAAAACGACGACGTTG+TGG | 0.551159 | 8_4:+25705233 | None:intergenic |
| AACTTCATACCCATCCGTTG+TGG | 0.552195 | 8_4:+25704014 | None:intergenic |
| ATAATAATAAACATTTATTG+TGG | 0.555876 | 8_4:+25702616 | None:intergenic |
| TCCATCATTTCTTCTTCAGT+AGG | 0.556672 | 8_4:+25703337 | None:intergenic |
| ACCTGGTCTTTGAAAGAATG+AGG | 0.559248 | 8_4:+25704749 | None:intergenic |
| AAGCCAATGAAAGATAGGTA+TGG | 0.560200 | 8_4:+25703554 | None:intergenic |
| TAAAACTCTTGCAACCCACT+TGG | 0.561189 | 8_4:+25703378 | None:intergenic |
| GAATGGATGGTTGAGTCTCT+GGG | 0.563567 | 8_4:-25704908 | Msa1320860:CDS |
| TGAGAATGCATTTGAAAACC+AGG | 0.564270 | 8_4:+25704785 | None:intergenic |
| AAAACCGAATCCACAACGGA+TGG | 0.564348 | 8_4:-25704024 | Msa1320860:CDS |
| AAAGTTGCAGTCATCGGCGC+CGG | 0.565896 | 8_4:-25705298 | Msa1320860:CDS |
| TTGTTTCTAGGAAAGGTATG+TGG | 0.567330 | 8_4:+25703648 | None:intergenic |
| GATGCCATAATCCATTGTAC+AGG | 0.568323 | 8_4:-25703805 | Msa1320860:CDS |
| CTTTACGCACAAATCTTCCA+AGG | 0.568859 | 8_4:-25705105 | Msa1320860:CDS |
| TGTAGAACCAAGAGTTAGTG+TGG | 0.572982 | 8_4:-25704828 | Msa1320860:CDS |
| GACCCGATTTGAAACGGAGG+TGG | 0.576782 | 8_4:-25704954 | Msa1320860:CDS |
| AGGTATGGAGCCAGTGAAGG+AGG | 0.579846 | 8_4:+25703569 | None:intergenic |
| GATAGGTATGGAGCCAGTGA+AGG | 0.584841 | 8_4:+25703566 | None:intergenic |
| AATCTTCCAAGGCAAATCAT+GGG | 0.585719 | 8_4:-25705094 | Msa1320860:CDS |
| GAGGAAAGAAAACGAATGGA+TGG | 0.585840 | 8_4:-25704921 | Msa1320860:CDS |
| ATTCTTGGTACCCTGTACAA+TGG | 0.588729 | 8_4:+25703794 | None:intergenic |
| CGGAGGTGGTGAAAGTTGAG+AGG | 0.596521 | 8_4:-25704940 | Msa1320860:CDS |
| AAACCGAATCCACAACGGAT+GGG | 0.596864 | 8_4:-25704023 | Msa1320860:CDS |
| CTGGTTGGGTCTATACTAAG+AGG | 0.600004 | 8_4:+25705157 | None:intergenic |
| TCCAAGGAGCTACAGCAAGA+AGG | 0.601876 | 8_4:-25705256 | Msa1320860:CDS |
| TGGGATGCCATTATTCAGAG+TGG | 0.606854 | 8_4:-25702768 | Msa1320860:CDS |
| GAAGATTTGTGCGTAAAGAG+TGG | 0.607471 | 8_4:+25705110 | None:intergenic |
| TGGGTCTATACTAAGAGGAT+CGG | 0.608316 | 8_4:+25705162 | None:intergenic |
| TCCCTCCAATCTTCCAGCGG+AGG | 0.612094 | 8_4:+25702867 | None:intergenic |
| ATGTGTCTATGAAGATGGCT+TGG | 0.615867 | 8_4:-25703860 | Msa1320860:intron |
| AATTGAGTTACAAGCCAAGT+GGG | 0.617986 | 8_4:-25703392 | Msa1320860:CDS |
| GTCAGGCTGACTATAAACAT+TGG | 0.623843 | 8_4:-25702911 | Msa1320860:intron |
| GAGAAGAACAACCGCGTCGG+AGG | 0.637401 | 8_4:-25705214 | Msa1320860:CDS |
| TTCGAGAAGAACAACCGCGT+CGG | 0.637502 | 8_4:-25705217 | Msa1320860:CDS |
| ATATCCAGGTTCCTCCGACG+CGG | 0.654542 | 8_4:+25705203 | None:intergenic |
| ATGCCATAATCCATTGTACA+GGG | 0.678156 | 8_4:-25703804 | Msa1320860:intron |
| GTAGCTCCTTGGAGGCGACG+AGG | 0.678530 | 8_4:+25705266 | None:intergenic |
| TAATTGAGTTACAAGCCAAG+TGG | 0.679129 | 8_4:-25703393 | Msa1320860:CDS |
| TTGTCCCTCCAATCTTCCAG+CGG | 0.692739 | 8_4:+25702864 | None:intergenic |
| CAACAAAACCGAATCCACAA+CGG | 0.697509 | 8_4:-25704028 | Msa1320860:CDS |
| GTTGACCCGATTTGAAACGG+AGG | 0.726393 | 8_4:-25704957 | Msa1320860:CDS |
| TGGATGGTTGAGTCTCTGGG+AGG | 0.804463 | 8_4:-25704905 | Msa1320860:CDS |
| TTAAGAACGTGATAACACAG+CGG | 0.846237 | 8_4:-25705406 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATTTAGATATAGATTT+TGG | - | chr8_4:25703333-25703352 | Msa1320860:CDS | 10.0% |
| !! | GTTTAAGTAATAAAAAAAAT+TGG | - | chr8_4:25703357-25703376 | Msa1320860:CDS | 10.0% |
| !! | TGAAAATAAATAAATATATG+TGG | + | chr8_4:25704212-25704231 | None:intergenic | 10.0% |
| !! | AAAAAAAAAACTATAATAAG+TGG | + | chr8_4:25704748-25704767 | None:intergenic | 10.0% |
| !!! | TTTTAAATCAAGAAATTAAT+CGG | - | chr8_4:25704764-25704783 | Msa1320860:CDS | 10.0% |
| !! | ATAATAATAAACATTTATTG+TGG | + | chr8_4:25705347-25705366 | None:intergenic | 10.0% |
| !!! | ATTTAATAAGTTGAAATTAC+TGG | - | chr8_4:25703262-25703281 | Msa1320860:CDS | 15.0% |
| !!! | ATTAATTTTCCAAACAAAAT+AGG | + | chr8_4:25703810-25703829 | None:intergenic | 15.0% |
| !!! | ATTTTGTTTGGAAAATTAAT+TGG | - | chr8_4:25703810-25703829 | Msa1320860:CDS | 15.0% |
| !! | AATAAATAAATATATGTGGA+AGG | + | chr8_4:25704208-25704227 | None:intergenic | 15.0% |
| !! | ACATAAATTAATAATATGAC+AGG | - | chr8_4:25704281-25704300 | Msa1320860:intron | 15.0% |
| !!! | TATATAGTTTATTTCTTTGA+AGG | - | chr8_4:25704479-25704498 | Msa1320860:intron | 15.0% |
| !! | AAAATAACTATATACCTTAT+AGG | + | chr8_4:25704995-25705014 | None:intergenic | 15.0% |
| !!! | AAATTTTACATACCAAAGTA+TGG | + | chr8_4:25703994-25704013 | None:intergenic | 20.0% |
| !! | AAATGTCAAATTTATAATCG+TGG | + | chr8_4:25704966-25704985 | None:intergenic | 20.0% |
| !! | TTTAATTCTGATTGTTACAT+TGG | - | chr8_4:25705247-25705266 | Msa1320860:CDS | 20.0% |
| !! | TTAATTCTGATTGTTACATT+GGG | - | chr8_4:25705248-25705267 | Msa1320860:CDS | 20.0% |
| ! | ATTTGAAAATGTAATGTACC+TGG | + | chr8_4:25703231-25703250 | None:intergenic | 25.0% |
| !! | AGGTACATTACATTTTCAAA+TGG | - | chr8_4:25703230-25703249 | Msa1320860:intron | 25.0% |
| ! | ACTAAGATGAACTATTTCAA+TGG | - | chr8_4:25703290-25703309 | Msa1320860:CDS | 25.0% |
| !! | AGGAGAAAGTTCATTATTTT+TGG | - | chr8_4:25703554-25703573 | Msa1320860:CDS | 25.0% |
| !! | TGTTTAATGCCTATTTTGTT+TGG | - | chr8_4:25703798-25703817 | Msa1320860:intron | 25.0% |
| ! | AATTAAAATCACAACCTGTT+AGG | + | chr8_4:25703845-25703864 | None:intergenic | 25.0% |
| !!! | TAACAGGTTGTGATTTTAAT+TGG | - | chr8_4:25703844-25703863 | Msa1320860:CDS | 25.0% |
| !!! | AACAGGTTGTGATTTTAATT+GGG | - | chr8_4:25703845-25703864 | Msa1320860:CDS | 25.0% |
| ! | TTGGTATGTAAAATTTGTCA+TGG | - | chr8_4:25703998-25704017 | Msa1320860:CDS | 25.0% |
| ! | ATTAAATGTGTCTATGAAGA+TGG | - | chr8_4:25704095-25704114 | Msa1320860:CDS | 25.0% |
| ! | GACAAAATATCAGAAATTCT+TGG | + | chr8_4:25704184-25704203 | None:intergenic | 25.0% |
| ! | TTACCATAAAAATAGTTTCC+TGG | + | chr8_4:25704550-25704569 | None:intergenic | 25.0% |
| ! | TAAAGATCTCTATCAATTCA+TGG | - | chr8_4:25704652-25704671 | Msa1320860:intron | 25.0% |
| !! | ATTGAATGAGTGTAACTTTT+GGG | + | chr8_4:25704692-25704711 | None:intergenic | 25.0% |
| !! | AATTGAATGAGTGTAACTTT+TGG | + | chr8_4:25704693-25704712 | None:intergenic | 25.0% |
| !! | ATCACGGTAAAAAATGTTTT+GGG | + | chr8_4:25704834-25704853 | None:intergenic | 25.0% |
| !! | AATCACGGTAAAAAATGTTT+TGG | + | chr8_4:25704835-25704854 | None:intergenic | 25.0% |
| !!! | TATCTAGCTTTAGTAAATCA+CGG | + | chr8_4:25704850-25704869 | None:intergenic | 25.0% |
| ! | ATTTATAAAAACACTCTGTC+AGG | - | chr8_4:25705032-25705051 | Msa1320860:CDS | 25.0% |
| ! | TCAGAATTTCATTGAAATGA+AGG | - | chr8_4:25705137-25705156 | Msa1320860:CDS | 25.0% |
| ! | ATGAATGGGATGATAATTAT+TGG | - | chr8_4:25705172-25705191 | Msa1320860:CDS | 25.0% |
| ! | TGAATGGGATGATAATTATT+GGG | - | chr8_4:25705173-25705192 | Msa1320860:CDS | 25.0% |
| !! | ATTCAATATCTTTGCCTTTT+AGG | + | chr8_4:25705226-25705245 | None:intergenic | 25.0% |
| !! | AATGAAAACGTTGACTGTTT+TGG | + | chr8_4:25702622-25702641 | None:intergenic | 30.0% |
| ! | TCATTTTCAACTAATCACGA+TGG | - | chr8_4:25702637-25702656 | Msa1320860:three_prime_UTR | 30.0% |
| !!! | TGAAGAAATGCTTCGTTTTT+TGG | - | chr8_4:25702949-25702968 | Msa1320860:intron | 30.0% |
| CAATGGATAATAATGCAAGT+AGG | - | chr8_4:25703307-25703326 | Msa1320860:CDS | 30.0% | |
| ! | ACGAAAGCACAATTTAATCT+AGG | - | chr8_4:25703459-25703478 | Msa1320860:intron | 30.0% |
| ! | TAGTCTTTGACTTTAACGAT+AGG | - | chr8_4:25703505-25703524 | Msa1320860:intron | 30.0% |
| ! | TTTTCTTCCATTAGTCACTT+TGG | + | chr8_4:25703657-25703676 | None:intergenic | 30.0% |
| ! | ATTGGTAATTACTACCTAAC+AGG | - | chr8_4:25703828-25703847 | Msa1320860:CDS | 30.0% |
| AATAGAGAATCCATCTTCAA+AGG | + | chr8_4:25704129-25704148 | None:intergenic | 30.0% | |
| ATACCTTTCCTAGAAACAAA+TGG | - | chr8_4:25704316-25704335 | Msa1320860:intron | 30.0% | |
| ! | TTACTGTTCCATTTGTTTCT+AGG | + | chr8_4:25704327-25704346 | None:intergenic | 30.0% |
| ATGTTAAGCCAATGAAAGAT+AGG | + | chr8_4:25704414-25704433 | None:intergenic | 30.0% | |
| AGTTATAAATTACCTTGACC+AGG | - | chr8_4:25704529-25704548 | Msa1320860:intron | 30.0% | |
| TAAAAATAGTTTCCTGGTCA+AGG | + | chr8_4:25704544-25704563 | None:intergenic | 30.0% | |
| !!! | TGACCAGGAAACTATTTTTA+TGG | - | chr8_4:25704544-25704563 | Msa1320860:intron | 30.0% |
| AACTCAATTAAGCATGTGTT+TGG | + | chr8_4:25704920-25704939 | None:intergenic | 30.0% | |
| CACATGCTTAATTGAGTTTA+TGG | - | chr8_4:25704922-25704941 | Msa1320860:CDS | 30.0% | |
| TGACATTTGTAAAGCCTATA+AGG | - | chr8_4:25704978-25704997 | Msa1320860:CDS | 30.0% | |
| ATTGGCTGATTGAACAAATT+GGG | - | chr8_4:25705067-25705086 | Msa1320860:CDS | 30.0% | |
| AGGAAATGTATAGAGATGAA+TGG | - | chr8_4:25705157-25705176 | Msa1320860:CDS | 30.0% | |
| GGAAATGTATAGAGATGAAT+GGG | - | chr8_4:25705158-25705177 | Msa1320860:CDS | 30.0% | |
| !! | TGTGTGTTTTCTTTTGAAGG+AGG | + | chr8_4:25702582-25702601 | None:intergenic | 35.0% |
| ! | CACTGTGTGTTTTCTTTTGA+AGG | + | chr8_4:25702585-25702604 | None:intergenic | 35.0% |
| ATGGTTAAAGTTGCAGTCAT+CGG | - | chr8_4:25702656-25702675 | Msa1320860:three_prime_UTR | 35.0% | |
| !!! | TGTTTTTGGAGTGTATATCC+AGG | + | chr8_4:25702774-25702793 | None:intergenic | 35.0% |
| AAATCTTCCAAGGCAAATCA+TGG | - | chr8_4:25702865-25702884 | Msa1320860:CDS | 35.0% | |
| AATCTTCCAAGGCAAATCAT+GGG | - | chr8_4:25702866-25702885 | Msa1320860:CDS | 35.0% | |
| !!! | CGTTTTTTGGAAGAATTTGC+AGG | - | chr8_4:25702962-25702981 | Msa1320860:intron | 35.0% |
| AAGAATTTGCAGGTGAGTTT+GGG | - | chr8_4:25702972-25702991 | Msa1320860:intron | 35.0% | |
| TTGAGAGGAAAGAAAACGAA+TGG | - | chr8_4:25703035-25703054 | Msa1320860:intron | 35.0% | |
| TGAGAATGCATTTGAAAACC+AGG | + | chr8_4:25703178-25703197 | None:intergenic | 35.0% | |
| ACAAAATCACTGTAACTCGT+TGG | - | chr8_4:25703417-25703436 | Msa1320860:intron | 35.0% | |
| AAGTGAAAAACGATGATGTG+AGG | - | chr8_4:25703534-25703553 | Msa1320860:intron | 35.0% | |
| CTAACGATGATGTGTTATCA+GGG | + | chr8_4:25703597-25703616 | None:intergenic | 35.0% | |
| !! | TCTAGTGCAAACTGTCATTT+TGG | + | chr8_4:25703749-25703768 | None:intergenic | 35.0% |
| !!! | GTTGTGATTTTAATTGGGCT+AGG | - | chr8_4:25703850-25703869 | Msa1320860:intron | 35.0% |
| CGCAATATGTTTCCATACTT+TGG | - | chr8_4:25703979-25703998 | Msa1320860:intron | 35.0% | |
| ATGCCATAATCCATTGTACA+GGG | - | chr8_4:25704156-25704175 | Msa1320860:intron | 35.0% | |
| !! | TTGTTTCTAGGAAAGGTATG+TGG | + | chr8_4:25704315-25704334 | None:intergenic | 35.0% |
| !! | GTTCCATTTGTTTCTAGGAA+AGG | + | chr8_4:25704322-25704341 | None:intergenic | 35.0% |
| GGAAAAACGTGTTTGTATAG+TGG | + | chr8_4:25704373-25704392 | None:intergenic | 35.0% | |
| AAGCCAATGAAAGATAGGTA+TGG | + | chr8_4:25704409-25704428 | None:intergenic | 35.0% | |
| TAATTGAGTTACAAGCCAAG+TGG | - | chr8_4:25704567-25704586 | Msa1320860:intron | 35.0% | |
| AATTGAGTTACAAGCCAAGT+GGG | - | chr8_4:25704568-25704587 | Msa1320860:intron | 35.0% | |
| !! | TGCAAGAGTTTTATCTGGTA+AGG | - | chr8_4:25704592-25704611 | Msa1320860:intron | 35.0% |
| ACCTACTGAAGAAGAAATGA+TGG | - | chr8_4:25704622-25704641 | Msa1320860:intron | 35.0% | |
| TCCATCATTTCTTCTTCAGT+AGG | + | chr8_4:25704626-25704645 | None:intergenic | 35.0% | |
| TCATTCAATTCGTCCATTTC+AGG | - | chr8_4:25704703-25704722 | Msa1320860:intron | 35.0% | |
| ! | TAATCGGCTTATAGTGTGTT+TGG | - | chr8_4:25704780-25704799 | Msa1320860:CDS | 35.0% |
| ATCGTGGATAAGTATACGAA+TGG | + | chr8_4:25704950-25704969 | None:intergenic | 35.0% | |
| ! | CATTGGCTGATTGAACAAAT+TGG | - | chr8_4:25705066-25705085 | Msa1320860:CDS | 35.0% |
| TTGGAGGGACAATATGTTAT+TGG | - | chr8_4:25705107-25705126 | Msa1320860:CDS | 35.0% | |
| !!! | GACTGTTTTGGTCAAAGTTC+AGG | + | chr8_4:25702610-25702629 | None:intergenic | 40.0% |
| TGGGTCTATACTAAGAGGAT+CGG | + | chr8_4:25702801-25702820 | None:intergenic | 40.0% | |
| ! | TGTGAACTGTTTCTCTGGTT+GGG | + | chr8_4:25702820-25702839 | None:intergenic | 40.0% |
| GAAGATTTGTGCGTAAAGAG+TGG | + | chr8_4:25702853-25702872 | None:intergenic | 40.0% | |
| CTTTACGCACAAATCTTCCA+AGG | - | chr8_4:25702855-25702874 | Msa1320860:CDS | 40.0% | |
| ! | AAGAATCCCATGATTTGCCT+TGG | + | chr8_4:25702875-25702894 | None:intergenic | 40.0% |
| GAAGAATTTGCAGGTGAGTT+TGG | - | chr8_4:25702971-25702990 | Msa1320860:intron | 40.0% | |
| ! | TGAGTTGACCCGATTTGAAA+CGG | - | chr8_4:25703000-25703019 | Msa1320860:intron | 40.0% |
| GAGGAAAGAAAACGAATGGA+TGG | - | chr8_4:25703039-25703058 | Msa1320860:intron | 40.0% | |
| !! | GAGTCGAGAAGTTTTTGAAG+CGG | - | chr8_4:25703087-25703106 | Msa1320860:intron | 40.0% |
| TGTAGAACCAAGAGTTAGTG+TGG | - | chr8_4:25703132-25703151 | Msa1320860:intron | 40.0% | |
| TCCTCATTCTTTCAAAGACC+AGG | - | chr8_4:25703210-25703229 | Msa1320860:intron | 40.0% | |
| ! | ACCTGGTCTTTGAAAGAATG+AGG | + | chr8_4:25703214-25703233 | None:intergenic | 40.0% |
| GCTAACGATGATGTGTTATC+AGG | + | chr8_4:25703598-25703617 | None:intergenic | 40.0% | |
| GACATCTCAAGAGATATTGC+AGG | - | chr8_4:25703886-25703905 | Msa1320860:intron | 40.0% | |
| AGATATTGCAGGAGTAGCAA+AGG | - | chr8_4:25703897-25703916 | Msa1320860:intron | 40.0% | |
| CAACAAAACCGAATCCACAA+CGG | - | chr8_4:25703932-25703951 | Msa1320860:intron | 40.0% | |
| ATGTGTCTATGAAGATGGCT+TGG | - | chr8_4:25704100-25704119 | Msa1320860:CDS | 40.0% | |
| GATGCCATAATCCATTGTAC+AGG | - | chr8_4:25704155-25704174 | Msa1320860:intron | 40.0% | |
| !! | GTACCCTGTACAATGGATTA+TGG | + | chr8_4:25704162-25704181 | None:intergenic | 40.0% |
| ATTCTTGGTACCCTGTACAA+TGG | + | chr8_4:25704169-25704188 | None:intergenic | 40.0% | |
| ACCATTGAAGATAATCGCGT+TGG | - | chr8_4:25704346-25704365 | Msa1320860:intron | 40.0% | |
| CCATTGAAGATAATCGCGTT+GGG | - | chr8_4:25704347-25704366 | Msa1320860:intron | 40.0% | |
| GCTCCATACCTATCTTTCAT+TGG | - | chr8_4:25704403-25704422 | Msa1320860:intron | 40.0% | |
| TAAAACTCTTGCAACCCACT+TGG | + | chr8_4:25704585-25704604 | None:intergenic | 40.0% | |
| !! | TGGGTTGCAAGAGTTTTATC+TGG | - | chr8_4:25704587-25704606 | Msa1320860:intron | 40.0% |
| ! | ACAAGAGCACATACCTGAAA+TGG | + | chr8_4:25704719-25704738 | None:intergenic | 40.0% |
| CGAGAAACAAGGTTTAAACG+TGG | + | chr8_4:25704808-25704827 | None:intergenic | 40.0% | |
| GTCAGGCTGACTATAAACAT+TGG | - | chr8_4:25705049-25705068 | Msa1320860:CDS | 40.0% | |
| AGCTGATCCACTCTGAATAA+TGG | + | chr8_4:25705202-25705221 | None:intergenic | 40.0% | |
| ! | AGAGGATCGGAGTCTGTTTT+TGG | + | chr8_4:25702788-25702807 | None:intergenic | 45.0% |
| CTGGTTGGGTCTATACTAAG+AGG | + | chr8_4:25702806-25702825 | None:intergenic | 45.0% | |
| ! | CTGTGAACTGTTTCTCTGGT+TGG | + | chr8_4:25702821-25702840 | None:intergenic | 45.0% |
| ! | ACTGCTGTGAACTGTTTCTC+TGG | + | chr8_4:25702825-25702844 | None:intergenic | 45.0% |
| AGGATTCTCGCTTGGACAAA+GGG | + | chr8_4:25702904-25702923 | None:intergenic | 45.0% | |
| ! | CGAAGCATTTCTTCATGACC+CGG | + | chr8_4:25702944-25702963 | None:intergenic | 45.0% |
| TCACCACCTCCGTTTCAAAT+CGG | + | chr8_4:25703012-25703031 | None:intergenic | 45.0% | |
| GAATGGATGGTTGAGTCTCT+GGG | - | chr8_4:25703052-25703071 | Msa1320860:intron | 45.0% | |
| !! | GAAGCGGTTGTTGTTTGTTC+AGG | - | chr8_4:25703103-25703122 | Msa1320860:intron | 45.0% |
| CAAGAGTTAGTGTGGTTCCT+GGG | - | chr8_4:25703140-25703159 | Msa1320860:intron | 45.0% | |
| ! | CCAGGAAACTTTTCAATCCC+AGG | + | chr8_4:25703160-25703179 | None:intergenic | 45.0% |
| CCTGGGATTGAAAAGTTTCC+TGG | - | chr8_4:25703157-25703176 | Msa1320860:intron | 45.0% | |
| TTTCCCTGACTTAACCTCAG+AGG | - | chr8_4:25703631-25703650 | Msa1320860:CDS | 45.0% | |
| ! | ATTAGTCACTTTGGCCTCTG+AGG | + | chr8_4:25703648-25703667 | None:intergenic | 45.0% |
| TCAGAGGCCAAAGTGACTAA+TGG | - | chr8_4:25703647-25703666 | Msa1320860:CDS | 45.0% | |
| AAAACCGAATCCACAACGGA+TGG | - | chr8_4:25703936-25703955 | Msa1320860:intron | 45.0% | |
| AAACCGAATCCACAACGGAT+GGG | - | chr8_4:25703937-25703956 | Msa1320860:intron | 45.0% | |
| ATACCCATCCGTTGTGGATT+CGG | + | chr8_4:25703943-25703962 | None:intergenic | 45.0% | |
| AACTTCATACCCATCCGTTG+TGG | + | chr8_4:25703949-25703968 | None:intergenic | 45.0% | |
| ACAACGGATGGGTATGAAGT+TGG | - | chr8_4:25703948-25703967 | Msa1320860:intron | 45.0% | |
| CCCAACGCGATTATCTTCAA+TGG | + | chr8_4:25704350-25704369 | None:intergenic | 45.0% | |
| ! | ACACGTTTTTCCTCCTTCAC+TGG | - | chr8_4:25704381-25704400 | Msa1320860:intron | 45.0% |
| TAAGCATGTGTTTGGCCTGA+CGG | + | chr8_4:25704912-25704931 | None:intergenic | 45.0% | |
| TGGGATGCCATTATTCAGAG+TGG | - | chr8_4:25705192-25705211 | Msa1320860:CDS | 45.0% | |
| GAGTGGATCAGCTTCCTAAA+AGG | - | chr8_4:25705209-25705228 | Msa1320860:CDS | 45.0% | |
| ! | TTCTTGCTGTAGCTCCTTGG+AGG | + | chr8_4:25702705-25702724 | None:intergenic | 50.0% |
| TCCAAGGAGCTACAGCAAGA+AGG | - | chr8_4:25702704-25702723 | Msa1320860:three_prime_UTR | 50.0% | |
| TCTCGAAAACGACGACGTTG+TGG | + | chr8_4:25702730-25702749 | None:intergenic | 50.0% | |
| TTCGAGAAGAACAACCGCGT+CGG | - | chr8_4:25702743-25702762 | Msa1320860:exon | 50.0% | |
| CAGGATTCTCGCTTGGACAA+AGG | + | chr8_4:25702905-25702924 | None:intergenic | 50.0% | |
| CTGTGATCCGAGAACGTTTC+CGG | - | chr8_4:25702922-25702941 | Msa1320860:intron | 50.0% | |
| TGTGATCCGAGAACGTTTCC+GGG | - | chr8_4:25702923-25702942 | Msa1320860:intron | 50.0% | |
| TCATGACCCGGAAACGTTCT+CGG | + | chr8_4:25702932-25702951 | None:intergenic | 50.0% | |
| ! | GTTGACCCGATTTGAAACGG+AGG | - | chr8_4:25703003-25703022 | Msa1320860:intron | 50.0% |
| CACCACCTCCGTTTCAAATC+GGG | + | chr8_4:25703011-25703030 | None:intergenic | 50.0% | |
| CGAATGGATGGTTGAGTCTC+TGG | - | chr8_4:25703051-25703070 | Msa1320860:intron | 50.0% | |
| CCAGGAACCACACTAACTCT+TGG | + | chr8_4:25703142-25703161 | None:intergenic | 50.0% | |
| CCAAGAGTTAGTGTGGTTCC+TGG | - | chr8_4:25703139-25703158 | Msa1320860:intron | 50.0% | |
| !! | TGGCCTCTGAGGTTAAGTCA+GGG | + | chr8_4:25703637-25703656 | None:intergenic | 50.0% |
| !! | TTGGCCTCTGAGGTTAAGTC+AGG | + | chr8_4:25703638-25703657 | None:intergenic | 50.0% |
| ! | GGCTTGGTTGCCTTTGAAGA+TGG | - | chr8_4:25704116-25704135 | Msa1320860:intron | 50.0% |
| GATAGGTATGGAGCCAGTGA+AGG | + | chr8_4:25704397-25704416 | None:intergenic | 50.0% | |
| !!! | GTTTTGGGACGCGAGAAACA+AGG | + | chr8_4:25704819-25704838 | None:intergenic | 50.0% |
| TGTTTGGCCTGACGGCTAAT+TGG | + | chr8_4:25704904-25704923 | None:intergenic | 50.0% | |
| TTGTCCCTCCAATCTTCCAG+CGG | + | chr8_4:25705099-25705118 | None:intergenic | 50.0% | |
| AAAGTTGCAGTCATCGGCGC+CGG | - | chr8_4:25702662-25702681 | Msa1320860:three_prime_UTR | 55.0% | |
| ! | GCCTTCTTGCTGTAGCTCCT+TGG | + | chr8_4:25702708-25702727 | None:intergenic | 55.0% |
| ATATCCAGGTTCCTCCGACG+CGG | + | chr8_4:25702760-25702779 | None:intergenic | 55.0% | |
| CGGATCACAGGATTCTCGCT+TGG | + | chr8_4:25702912-25702931 | None:intergenic | 55.0% | |
| CGGAAACGTTCTCGGATCAC+AGG | + | chr8_4:25702924-25702943 | None:intergenic | 55.0% | |
| ! | GACCCGATTTGAAACGGAGG+TGG | - | chr8_4:25703006-25703025 | Msa1320860:intron | 55.0% |
| CGGAGGTGGTGAAAGTTGAG+AGG | - | chr8_4:25703020-25703039 | Msa1320860:intron | 55.0% | |
| TGGATGGTTGAGTCTCTGGG+AGG | - | chr8_4:25703055-25703074 | Msa1320860:intron | 55.0% | |
| AGGTATGGAGCCAGTGAAGG+AGG | + | chr8_4:25704394-25704413 | None:intergenic | 55.0% | |
| GAGAAGAACAACCGCGTCGG+AGG | - | chr8_4:25702746-25702765 | Msa1320860:exon | 60.0% | |
| GCTGCGTCCAATTAGCCGTC+AGG | - | chr8_4:25704894-25704913 | Msa1320860:CDS | 60.0% | |
| ACAAATTGGGCTGCCTCCGC+TGG | - | chr8_4:25705080-25705099 | Msa1320860:CDS | 60.0% | |
| TGCCTCCGCTGGAAGATTGG+AGG | - | chr8_4:25705091-25705110 | Msa1320860:CDS | 60.0% | |
| GCCTCCGCTGGAAGATTGGA+GGG | - | chr8_4:25705092-25705111 | Msa1320860:CDS | 60.0% | |
| TCCCTCCAATCTTCCAGCGG+AGG | + | chr8_4:25705096-25705115 | None:intergenic | 60.0% | |
| GTAGCTCCTTGGAGGCGACG+AGG | + | chr8_4:25702697-25702716 | None:intergenic | 65.0% | |
| ACAACCGCGTCGGAGGAACC+TGG | - | chr8_4:25702753-25702772 | Msa1320860:exon | 65.0% | |
| GGCTGCCTCCGCTGGAAGAT+TGG | - | chr8_4:25705088-25705107 | Msa1320860:CDS | 65.0% | |
| ! | GTCATCGGCGCCGGAGTCTC+CGG | - | chr8_4:25702671-25702690 | Msa1320860:three_prime_UTR | 70.0% |
| CTCCTTGGAGGCGACGAGGC+CGG | + | chr8_4:25702693-25702712 | None:intergenic | 70.0% | |
| GGCGACGAGGCCGGAGACTC+CGG | + | chr8_4:25702684-25702703 | None:intergenic | 75.0% | |
| CTCCGGCCTCGTCGCCTCCA+AGG | - | chr8_4:25702688-25702707 | Msa1320860:three_prime_UTR | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 25702562 | 25705420 | 25702562 | ID=Msa1320860;Name=Msa1320860 |
| chr8_4 | mRNA | 25702562 | 25705420 | 25702562 | ID=Msa1320860-mRNA-1;Parent=Msa1320860;Name=Msa1320860-mRNA-1;_AED=0.08;_eAED=0.08;_QI=94|0.83|0.85|1|0.83|0.71|7|171|424 |
| chr8_4 | exon | 25702562 | 25702605 | 25702562 | ID=Msa1320860-mRNA-1:exon:8871;Parent=Msa1320860-mRNA-1 |
| chr8_4 | exon | 25702628 | 25702928 | 25702628 | ID=Msa1320860-mRNA-1:exon:8870;Parent=Msa1320860-mRNA-1 |
| chr8_4 | exon | 25703258 | 25703431 | 25703258 | ID=Msa1320860-mRNA-1:exon:8869;Parent=Msa1320860-mRNA-1 |
| chr8_4 | exon | 25703544 | 25703679 | 25703544 | ID=Msa1320860-mRNA-1:exon:8868;Parent=Msa1320860-mRNA-1 |
| chr8_4 | exon | 25703805 | 25703868 | 25703805 | ID=Msa1320860-mRNA-1:exon:8867;Parent=Msa1320860-mRNA-1 |
| chr8_4 | exon | 25703982 | 25704132 | 25703982 | ID=Msa1320860-mRNA-1:exon:8866;Parent=Msa1320860-mRNA-1 |
| chr8_4 | exon | 25704751 | 25705420 | 25704751 | ID=Msa1320860-mRNA-1:exon:8865;Parent=Msa1320860-mRNA-1 |
| chr8_4 | five_prime_UTR | 25705327 | 25705420 | 25705327 | ID=Msa1320860-mRNA-1:five_prime_utr;Parent=Msa1320860-mRNA-1 |
| chr8_4 | CDS | 25704751 | 25705326 | 25704751 | ID=Msa1320860-mRNA-1:cds;Parent=Msa1320860-mRNA-1 |
| chr8_4 | CDS | 25703982 | 25704132 | 25703982 | ID=Msa1320860-mRNA-1:cds;Parent=Msa1320860-mRNA-1 |
| chr8_4 | CDS | 25703805 | 25703868 | 25703805 | ID=Msa1320860-mRNA-1:cds;Parent=Msa1320860-mRNA-1 |
| chr8_4 | CDS | 25703544 | 25703679 | 25703544 | ID=Msa1320860-mRNA-1:cds;Parent=Msa1320860-mRNA-1 |
| chr8_4 | CDS | 25703258 | 25703431 | 25703258 | ID=Msa1320860-mRNA-1:cds;Parent=Msa1320860-mRNA-1 |
| chr8_4 | CDS | 25702755 | 25702928 | 25702755 | ID=Msa1320860-mRNA-1:cds;Parent=Msa1320860-mRNA-1 |
| chr8_4 | three_prime_UTR | 25702628 | 25702754 | 25702628 | ID=Msa1320860-mRNA-1:three_prime_utr;Parent=Msa1320860-mRNA-1 |
| chr8_4 | three_prime_UTR | 25702562 | 25702605 | 25702562 | ID=Msa1320860-mRNA-1:three_prime_utr;Parent=Msa1320860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
