Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1192450 | XP_024627699.1 | 84.223 | 843 | 72 | 7 | 1 | 789 | 1 | 836 | 0.0 | 1224 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1192450 | A0A396GN91 | 84.223 | 843 | 72 | 7 | 1 | 789 | 1 | 836 | 0.0 | 1224 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0445280 | Msa1192450 | 0.806863 | 6.690289e-50 | -8.615850e-47 |
| Msa0448550 | Msa1192450 | -0.814948 | 1.187698e-51 | -8.615850e-47 |
| Msa1192450 | Msa1247030 | 0.850157 | 2.035368e-60 | -8.615850e-47 |
| Msa1192450 | Msa1286310 | 0.917675 | 3.978145e-86 | -8.615850e-47 |
| Msa1192450 | Msa1397260 | 0.804683 | 1.920532e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1192450 | MtrunA17_Chr8g0361681 | 84.223 | 843 | 72 | 7 | 1 | 789 | 1 | 836 | 0.0 | 1224 |
| Msa1192450 | MtrunA17_Chr5g0417111 | 52.823 | 496 | 163 | 13 | 359 | 789 | 420 | 909 | 1.92e-144 | 447 |
| Msa1192450 | MtrunA17_Chr7g0217181 | 39.671 | 426 | 199 | 8 | 410 | 788 | 330 | 744 | 1.72e-91 | 303 |
| Msa1192450 | MtrunA17_Chr8g0361691 | 63.514 | 148 | 38 | 2 | 572 | 704 | 1 | 147 | 6.68e-54 | 184 |
| Msa1192450 | MtrunA17_Chr4g0000281 | 31.667 | 240 | 124 | 6 | 582 | 789 | 194 | 425 | 5.69e-27 | 114 |
| Msa1192450 | MtrunA17_Chr8g0391071 | 26.693 | 251 | 132 | 6 | 580 | 787 | 318 | 559 | 4.42e-14 | 75.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1192450 | AT5G39785.1 | 41.935 | 403 | 176 | 10 | 442 | 789 | 207 | 606 | 1.61e-88 | 291 |
| Msa1192450 | AT5G39785.3 | 41.935 | 403 | 176 | 10 | 442 | 789 | 207 | 606 | 1.61e-88 | 291 |
| Msa1192450 | AT5G39785.5 | 41.935 | 403 | 176 | 10 | 442 | 789 | 207 | 606 | 1.61e-88 | 291 |
| Msa1192450 | AT5G39785.2 | 41.337 | 404 | 178 | 9 | 442 | 789 | 207 | 607 | 7.21e-88 | 290 |
| Msa1192450 | AT1G69610.3 | 42.564 | 390 | 166 | 10 | 443 | 789 | 218 | 592 | 9.71e-83 | 276 |
| Msa1192450 | AT5G39785.4 | 40.421 | 428 | 172 | 12 | 442 | 789 | 207 | 631 | 1.30e-82 | 276 |
| Msa1192450 | AT1G69610.1 | 42.564 | 390 | 166 | 10 | 443 | 789 | 262 | 636 | 3.88e-82 | 275 |
| Msa1192450 | AT1G69610.2 | 42.564 | 390 | 166 | 10 | 443 | 789 | 263 | 637 | 4.36e-82 | 275 |
| Msa1192450 | AT3G20260.1 | 30.400 | 250 | 134 | 4 | 576 | 789 | 192 | 437 | 1.65e-26 | 114 |
| Msa1192450 | AT3G01175.1 | 26.940 | 464 | 230 | 18 | 403 | 788 | 143 | 575 | 3.59e-19 | 92.4 |
| Msa1192450 | AT1G73850.2 | 24.609 | 256 | 137 | 7 | 582 | 788 | 385 | 633 | 1.72e-18 | 90.5 |
| Msa1192450 | AT1G73850.1 | 24.609 | 256 | 137 | 7 | 582 | 788 | 385 | 633 | 1.72e-18 | 90.5 |
Find 107 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTATGTGGTTCATTCTA+TGG | 0.168026 | 8_1:-38283363 | Msa1192450:CDS |
| AACCTTTGATGGAAGAAATT+TGG | 0.171845 | 8_1:-38283574 | Msa1192450:five_prime_UTR |
| CTTGAGAGATTGATCATATA+TGG | 0.188250 | 8_1:-38283504 | Msa1192450:exon |
| AGGAGGACTTGCAACAATTT+TGG | 0.237380 | 8_1:-38281985 | Msa1192450:CDS |
| AGAAATGTTTCTTATGATAA+TGG | 0.238779 | 8_1:-38282422 | Msa1192450:CDS |
| TATCATAAGAAACATTTCTT+AGG | 0.248228 | 8_1:+38282426 | None:intergenic |
| CATGATTCATGAACCTTTGA+TGG | 0.248335 | 8_1:-38283585 | None:intergenic |
| TCTTTGACATGTAAGATTAT+AGG | 0.254165 | 8_1:-38282266 | Msa1192450:CDS |
| TGAAAATATAAAGGGTTCTT+TGG | 0.260528 | 8_1:-38282648 | Msa1192450:CDS |
| TGATCCTCACATACATATTC+AGG | 0.265707 | 8_1:-38283337 | Msa1192450:intron |
| TTCTAGCATTGAAAATATAA+AGG | 0.270515 | 8_1:-38282657 | Msa1192450:CDS |
| TAGAAAGTGCATCATTTCTT+AGG | 0.278161 | 8_1:+38282675 | None:intergenic |
| TAATGAATTGCATAGGGATT+TGG | 0.281823 | 8_1:-38280587 | Msa1192450:CDS |
| CTTCAAGTTCCAATCATAAA+AGG | 0.287284 | 8_1:-38280331 | Msa1192450:intron |
| TTGTCTATGAAAACTTGATT+TGG | 0.297848 | 8_1:-38283415 | Msa1192450:CDS |
| AGGAATCCATGCAAGTGTTT+TGG | 0.298411 | 8_1:-38279848 | Msa1192450:CDS |
| CGTAGGTATAATTTAGTTGC+TGG | 0.316010 | 8_1:-38280466 | Msa1192450:CDS |
| TCTTGTCAACAAAATTGATT+TGG | 0.318514 | 8_1:+38279264 | None:intergenic |
| GGTAATGGAACAAATCAAAT+TGG | 0.320087 | 8_1:-38282027 | Msa1192450:CDS |
| TTTCCCAAGAGAGACAAATT+TGG | 0.320432 | 8_1:+38280548 | None:intergenic |
| TGAGAAAAGATCATCTAATA+TGG | 0.344831 | 8_1:-38279304 | Msa1192450:CDS |
| TTAGTTCAACACAAAGATAT+TGG | 0.346942 | 8_1:-38282488 | Msa1192450:CDS |
| TTGGCCAAATTTGTCTCTCT+TGG | 0.350400 | 8_1:-38280552 | Msa1192450:CDS |
| TGTCTATGAAAACTTGATTT+GGG | 0.361387 | 8_1:-38283414 | Msa1192450:CDS |
| ACCCTATGGTCTTGCTGAAA+TGG | 0.370267 | 8_1:+38280394 | None:intergenic |
| TCTAGCATTGAAAATATAAA+GGG | 0.379257 | 8_1:-38282656 | Msa1192450:CDS |
| CATTAACAAGCTTCAACATT+GGG | 0.384723 | 8_1:+38280605 | None:intergenic |
| CAAGGAAGTTCAAGAATTAA+AGG | 0.389388 | 8_1:-38282204 | Msa1192450:CDS |
| TTTCAGGCCATGCATGCAAT+AGG | 0.397307 | 8_1:-38281801 | Msa1192450:intron |
| ACTATTGGAGCATAATTTAG+AGG | 0.398182 | 8_1:-38282369 | Msa1192450:CDS |
| AGAAACAGAGTACTCTGTTC+TGG | 0.400740 | 8_1:-38283032 | Msa1192450:CDS |
| TGAAAACTTGATTTGGGCAT+TGG | 0.401931 | 8_1:-38283408 | Msa1192450:CDS |
| TGAAGAAGAGTTGGATGAAA+TGG | 0.405660 | 8_1:-38282102 | Msa1192450:CDS |
| TCCACCATCAAGATGAAAAT+CGG | 0.412118 | 8_1:+38282580 | None:intergenic |
| TGGCCAAATTTGTCTCTCTT+GGG | 0.416473 | 8_1:-38280551 | Msa1192450:CDS |
| GAAGTGGAAATTGCATAGTA+AGG | 0.420510 | 8_1:-38279430 | Msa1192450:CDS |
| AAATATAAAGAAGGAACTAT+TGG | 0.422373 | 8_1:-38282384 | Msa1192450:CDS |
| CCACATTGTTGAAATTCAAA+AGG | 0.423899 | 8_1:-38281871 | Msa1192450:CDS |
| ATCTTCTCTTCAATACTCAA+TGG | 0.427669 | 8_1:+38281906 | None:intergenic |
| AATATCTTTGTGTTGAACTA+AGG | 0.430221 | 8_1:+38282490 | None:intergenic |
| AATTATGTGGTTCATTCTAT+GGG | 0.430360 | 8_1:-38283362 | Msa1192450:CDS |
| TAGTGATCCCTCAGAATTTG+TGG | 0.431182 | 8_1:-38280657 | Msa1192450:CDS |
| AAGAAGAAGAAGAAACAATA+GGG | 0.435075 | 8_1:-38282538 | Msa1192450:CDS |
| ATATGAAAATCTTCATAGCT+TGG | 0.439737 | 8_1:+38283076 | None:intergenic |
| AACGAAAAGCTTAAGATCAT+AGG | 0.441241 | 8_1:+38282698 | None:intergenic |
| CCTTATGCAACGGTTCTTTG+AGG | 0.443778 | 8_1:-38280422 | Msa1192450:CDS |
| TTCAGGTCTTCTTCAACTAA+AGG | 0.444369 | 8_1:-38280734 | Msa1192450:intron |
| TAGAGGCTTGACTTGTTTGA+CGG | 0.444445 | 8_1:+38280678 | None:intergenic |
| TGGGGTGAAGAGGATGGAAT+TGG | 0.445515 | 8_1:-38279897 | Msa1192450:intron |
| GTTGGATGAAATGGATTATG+AGG | 0.446923 | 8_1:-38282093 | Msa1192450:CDS |
| TTCAAAATTATGTCAAGAAT+CGG | 0.447066 | 8_1:-38280372 | Msa1192450:CDS |
| CAGTGAAGATCAAATTCAAC+TGG | 0.448901 | 8_1:-38279393 | Msa1192450:CDS |
| TTTCATGTTTCTCAAGAAGA+TGG | 0.452898 | 8_1:-38282344 | Msa1192450:CDS |
| TTGAGAGATTGATCATATAT+GGG | 0.461405 | 8_1:-38283503 | Msa1192450:exon |
| TTCCAAATTTCTTCCATCAA+AGG | 0.464306 | 8_1:+38283572 | None:intergenic |
| TCATTAACAAGCTTCAACAT+TGG | 0.467308 | 8_1:+38280604 | None:intergenic |
| GCTCTCACCTATTGCATGCA+TGG | 0.469292 | 8_1:+38281794 | None:intergenic |
| AACATTGTATGAAGAAGAGT+TGG | 0.470871 | 8_1:-38282111 | Msa1192450:CDS |
| AAGGTTAGAACAAATAATTA+AGG | 0.476290 | 8_1:-38279868 | Msa1192450:CDS |
| ATTGAGTATTGAAGAGAAGA+TGG | 0.483088 | 8_1:-38281904 | Msa1192450:CDS |
| CCTCAAAGAACCGTTGCATA+AGG | 0.488490 | 8_1:+38280422 | None:intergenic |
| TTCTAGCACAAGTAGGATTG+AGG | 0.488666 | 8_1:-38279358 | Msa1192450:CDS |
| TATAGAGAGTGAAGAAAGAG+AGG | 0.492005 | 8_1:-38283056 | Msa1192450:CDS |
| AATCAACAAGATGATGAGAA+AGG | 0.502995 | 8_1:-38282992 | Msa1192450:CDS |
| GTGGGAGAATGATGAGGTAA+TGG | 0.503171 | 8_1:-38282042 | Msa1192450:CDS |
| GATTTGGAAATTGTTTATGT+TGG | 0.507681 | 8_1:-38280571 | Msa1192450:CDS |
| AAACTTCCAAAACACTTGCA+TGG | 0.511519 | 8_1:+38279842 | None:intergenic |
| AAGCATTGGAAATATAAAGA+AGG | 0.512874 | 8_1:-38282393 | Msa1192450:CDS |
| AGGATTGAGGTTGATTTCAA+AGG | 0.514457 | 8_1:-38279345 | Msa1192450:CDS |
| TTGTTGAGCGCGAATACGAA+AGG | 0.514609 | 8_1:-38282139 | Msa1192450:CDS |
| GCTTGTTAATGAATTGCATA+GGG | 0.516958 | 8_1:-38280593 | Msa1192450:CDS |
| CAAGATGATGAGAAAGGAAA+GGG | 0.525313 | 8_1:-38282986 | Msa1192450:CDS |
| TCAATTTGAAGATTATGAGA+TGG | 0.526461 | 8_1:-38283134 | Msa1192450:CDS |
| ACATGTCAAAGAATCATCAT+TGG | 0.527186 | 8_1:+38282277 | None:intergenic |
| TTTGGGCATTGGCTTCTGCA+TGG | 0.537606 | 8_1:-38283397 | Msa1192450:CDS |
| ACCATTTCAGCAAGACCATA+GGG | 0.537698 | 8_1:-38280395 | Msa1192450:CDS |
| GAGCAGTTTCTAGCACAAGT+AGG | 0.547845 | 8_1:-38279365 | Msa1192450:CDS |
| AAACTAAAGCTTAAGACCAT+AGG | 0.553212 | 8_1:+38282449 | None:intergenic |
| TCTCTTGGGAAATCCTATGT+TGG | 0.556438 | 8_1:-38280537 | Msa1192450:CDS |
| AACCATTTCAGCAAGACCAT+AGG | 0.564584 | 8_1:-38280396 | Msa1192450:CDS |
| AGCTTGTTAATGAATTGCAT+AGG | 0.564944 | 8_1:-38280594 | Msa1192450:CDS |
| TTGCGTGGCCACAAATTCTG+AGG | 0.565008 | 8_1:+38280649 | None:intergenic |
| AGGATGGAATTGGTAGTGAA+AGG | 0.568749 | 8_1:-38279887 | Msa1192450:CDS |
| ATTTGAGTGTGAAAGTGTCA+AGG | 0.574044 | 8_1:-38282222 | Msa1192450:CDS |
| ACAAGATGATGAGAAAGGAA+AGG | 0.578719 | 8_1:-38282987 | Msa1192450:CDS |
| GATGGATCAGTTCACAGAAG+AGG | 0.590083 | 8_1:-38283116 | Msa1192450:CDS |
| AACAGAGTACTCTGTTCTGG+TGG | 0.590993 | 8_1:-38283029 | Msa1192450:CDS |
| GGTTTGATTCTACAACAAGT+AGG | 0.598657 | 8_1:-38282517 | Msa1192450:CDS |
| TGTTGACAAGAAGATTCAAG+TGG | 0.599563 | 8_1:-38279252 | Msa1192450:CDS |
| TGTGAGATTTCAGCATAACA+AGG | 0.599893 | 8_1:+38283471 | None:intergenic |
| TGTTGAGCGCGAATACGAAA+GGG | 0.603115 | 8_1:-38282138 | Msa1192450:CDS |
| CTCAAGGAAAGATTAAGAAG+TGG | 0.603788 | 8_1:-38279446 | Msa1192450:CDS |
| TGCGTGGCCACAAATTCTGA+GGG | 0.604567 | 8_1:+38280650 | None:intergenic |
| TGATGAGGATGAATTTGAGT+GGG | 0.611519 | 8_1:-38282060 | Msa1192450:CDS |
| ATAGAGAGTGAAGAAAGAGA+GGG | 0.612047 | 8_1:-38283055 | Msa1192450:CDS |
| GTAGAAGGAGAGAAAACTCA+AGG | 0.618624 | 8_1:-38279462 | Msa1192450:intron |
| AAATTATACCTACGAAGTCG+TGG | 0.625764 | 8_1:+38280475 | None:intergenic |
| GATTCAAATCTTGATCAAGA+TGG | 0.633810 | 8_1:-38282842 | Msa1192450:CDS |
| ATGATGAGGATGAATTTGAG+TGG | 0.634660 | 8_1:-38282061 | Msa1192450:CDS |
| CAAACCTGAATATGTATGTG+AGG | 0.635163 | 8_1:+38283333 | None:intergenic |
| ATGTGATAGAGAAGAAGACT+CGG | 0.638822 | 8_1:-38282168 | Msa1192450:CDS |
| ATGATTCTCCACGACTTCGT+AGG | 0.639610 | 8_1:-38280483 | Msa1192450:CDS |
| TGAGGAAGATGAAGATGATG+AGG | 0.646536 | 8_1:-38282075 | Msa1192450:CDS |
| AAATTCTGAGGGATCACTAG+AGG | 0.650815 | 8_1:+38280661 | None:intergenic |
| ATTATGTGGTTCATTCTATG+GGG | 0.652106 | 8_1:-38283361 | Msa1192450:CDS |
| GAAGCTGACTGTAATCAACA+AGG | 0.693791 | 8_1:+38279209 | None:intergenic |
| ATTTGAGTGGGAGAATGATG+AGG | 0.727491 | 8_1:-38282048 | Msa1192450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAATGAAAAATAAATAA+TGG | - | chr8_1:38279502-38279521 | Msa1192450:intron | 10.0% |
| !! | TAAATATGAATTATTTAGTT+AGG | + | chr8_1:38281691-38281710 | None:intergenic | 10.0% |
| !! | ATTATAATATTGAAGAAAAT+GGG | + | chr8_1:38281851-38281870 | None:intergenic | 10.0% |
| !! | TATTATAATATTGAAGAAAA+TGG | + | chr8_1:38281852-38281871 | None:intergenic | 10.0% |
| !!! | TTTTGCATTAAAAATAATTT+TGG | + | chr8_1:38282043-38282062 | None:intergenic | 10.0% |
| !!! | ATTTTTCATTATCTTTTTTC+TGG | + | chr8_1:38279496-38279515 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTCAGATATCAA+AGG | - | chr8_1:38279539-38279558 | Msa1192450:intron | 15.0% |
| !!! | TATTTTTTTTCTATCTCTTT+TGG | - | chr8_1:38281406-38281425 | Msa1192450:intron | 15.0% |
| !!! | CATATTTAAAATACAAAGTT+AGG | - | chr8_1:38281703-38281722 | Msa1192450:intron | 15.0% |
| !! | ATTTAATTAGTTAATCACAA+AGG | + | chr8_1:38281974-38281993 | None:intergenic | 15.0% |
| !!! | TGAACAACAATTTAAAATTA+TGG | - | chr8_1:38282619-38282638 | Msa1192450:CDS | 15.0% |
| !! | AATAATTTGAAAAGTTAAAG+TGG | + | chr8_1:38282739-38282758 | None:intergenic | 15.0% |
| !! | AAGATAAGAAAAAAATTAAG+TGG | - | chr8_1:38282829-38282848 | Msa1192450:CDS | 15.0% |
| !! | AGATAAGAAAAAAATTAAGT+GGG | - | chr8_1:38282830-38282849 | Msa1192450:CDS | 15.0% |
| !! | AATAAAAAACCTTATGTAAT+TGG | + | chr8_1:38283040-38283059 | None:intergenic | 15.0% |
| !! | TTCTTACAAACTTAATATTA+TGG | + | chr8_1:38283176-38283195 | None:intergenic | 15.0% |
| !! | AAAAAATGAATAATTTCGTA+GGG | + | chr8_1:38283245-38283264 | None:intergenic | 15.0% |
| !! | AAAAAAATGAATAATTTCGT+AGG | + | chr8_1:38283246-38283265 | None:intergenic | 15.0% |
| !!! | CTTTCTTTTTTATAAAGAGA+AGG | + | chr8_1:38279214-38279233 | None:intergenic | 20.0% |
| !!! | TTCTGGCTAATATTATTTAT+TGG | + | chr8_1:38279479-38279498 | None:intergenic | 20.0% |
| !! | AATAGTGAAAAAGAAACAAA+AGG | - | chr8_1:38279799-38279818 | Msa1192450:intron | 20.0% |
| !! | ATAGTGAAAAAGAAACAAAA+GGG | - | chr8_1:38279800-38279819 | Msa1192450:intron | 20.0% |
| !!! | TTCTAGCATTGAAAATATAA+AGG | - | chr8_1:38280089-38280108 | Msa1192450:intron | 20.0% |
| !!! | TCTAGCATTGAAAATATAAA+GGG | - | chr8_1:38280090-38280109 | Msa1192450:intron | 20.0% |
| !! | TATCATAAGAAACATTTCTT+AGG | + | chr8_1:38280323-38280342 | None:intergenic | 20.0% |
| !! | AGAAATGTTTCTTATGATAA+TGG | - | chr8_1:38280324-38280343 | Msa1192450:intron | 20.0% |
| !! | AAATATAAAGAAGGAACTAT+TGG | - | chr8_1:38280362-38280381 | Msa1192450:CDS | 20.0% |
| !! | GAAAAAGAAGTCAAATAATT+TGG | + | chr8_1:38280977-38280996 | None:intergenic | 20.0% |
| !! | AATAATATGCTTATGAAACA+CGG | + | chr8_1:38281238-38281257 | None:intergenic | 20.0% |
| !! | GTGATTAGAAAGAATATAAA+GGG | + | chr8_1:38281505-38281524 | None:intergenic | 20.0% |
| !! | TGTGATTAGAAAGAATATAA+AGG | + | chr8_1:38281506-38281525 | None:intergenic | 20.0% |
| !! | TGAATGGAAAATAAAAAGAA+TGG | + | chr8_1:38281591-38281610 | None:intergenic | 20.0% |
| !!! | GCATTAAAAATAATTTTGGA+GGG | + | chr8_1:38282039-38282058 | None:intergenic | 20.0% |
| !!! | TGCATTAAAAATAATTTTGG+AGG | + | chr8_1:38282040-38282059 | None:intergenic | 20.0% |
| !! | TTCAAAATTATGTCAAGAAT+CGG | - | chr8_1:38282374-38282393 | Msa1192450:CDS | 20.0% |
| !! | GATAAGAAAAAAATTAAGTG+GGG | - | chr8_1:38282831-38282850 | Msa1192450:CDS | 20.0% |
| !! | AAGGTTAGAACAAATAATTA+AGG | - | chr8_1:38282878-38282897 | Msa1192450:CDS | 20.0% |
| !! | TATTCAAATCCAATTACATA+AGG | - | chr8_1:38283028-38283047 | Msa1192450:CDS | 20.0% |
| !!! | TAAAAACTCGTAATTTTGTA+TGG | + | chr8_1:38283113-38283132 | None:intergenic | 20.0% |
| !!! | TATAGATACATTTTTTTGAG+AGG | - | chr8_1:38283568-38283587 | Msa1192450:five_prime_UTR | 20.0% |
| ! | TTGAGAGATTGATCATATAT+GGG | - | chr8_1:38279243-38279262 | Msa1192450:CDS | 25.0% |
| !! | TTTTCATAGACAAAATCACT+AGG | + | chr8_1:38279324-38279343 | None:intergenic | 25.0% |
| ! | TTGTCTATGAAAACTTGATT+TGG | - | chr8_1:38279331-38279350 | Msa1192450:CDS | 25.0% |
| ! | TGTCTATGAAAACTTGATTT+GGG | - | chr8_1:38279332-38279351 | Msa1192450:CDS | 25.0% |
| !! | GATTTTCTTATGCAATTATG+TGG | - | chr8_1:38279371-38279390 | Msa1192450:CDS | 25.0% |
| ! | AATTATGTGGTTCATTCTAT+GGG | - | chr8_1:38279384-38279403 | Msa1192450:CDS | 25.0% |
| !! | TTTTGTTCAACTAAATCATG+TGG | + | chr8_1:38279583-38279602 | None:intergenic | 25.0% |
| ! | TCAATTTGAAGATTATGAGA+TGG | - | chr8_1:38279612-38279631 | Msa1192450:intron | 25.0% |
| ! | ATATGAAAATCTTCATAGCT+TGG | + | chr8_1:38279673-38279692 | None:intergenic | 25.0% |
| !! | AAATCACAAGTATCTTTTTC+TGG | + | chr8_1:38280018-38280037 | None:intergenic | 25.0% |
| ! | AGAAAAAGATACTTGTGATT+TGG | - | chr8_1:38280017-38280036 | Msa1192450:intron | 25.0% |
| ! | TGAAAATATAAAGGGTTCTT+TGG | - | chr8_1:38280098-38280117 | Msa1192450:intron | 25.0% |
| ! | AAGAAGAAGAAGAAACAATA+GGG | - | chr8_1:38280208-38280227 | Msa1192450:intron | 25.0% |
| ! | AATATCTTTGTGTTGAACTA+AGG | + | chr8_1:38280259-38280278 | None:intergenic | 25.0% |
| ! | TTAGTTCAACACAAAGATAT+TGG | - | chr8_1:38280258-38280277 | Msa1192450:intron | 25.0% |
| !!! | AAGCATTGGAAATATAAAGA+AGG | - | chr8_1:38280353-38280372 | Msa1192450:CDS | 25.0% |
| ! | TCTTTGACATGTAAGATTAT+AGG | - | chr8_1:38280480-38280499 | Msa1192450:CDS | 25.0% |
| ! | TACTTGTATTGAGTTCATAT+TGG | - | chr8_1:38281007-38281026 | Msa1192450:intron | 25.0% |
| ! | TATTGAGTTCATATTGGATT+TGG | - | chr8_1:38281013-38281032 | Msa1192450:intron | 25.0% |
| ! | TTTGGATAATTTCAATGATC+TGG | - | chr8_1:38281031-38281050 | Msa1192450:intron | 25.0% |
| ! | ACACATGTTTATTTACAGTT+AGG | - | chr8_1:38281434-38281453 | Msa1192450:intron | 25.0% |
| !! | ATAGTGGAATTGAAAAGTTA+TGG | + | chr8_1:38281555-38281574 | None:intergenic | 25.0% |
| ! | TGGAAAATATTGTCAAATAG+TGG | + | chr8_1:38281571-38281590 | None:intergenic | 25.0% |
| !!! | CATTTCTTGTTTTTTACGTA+AGG | - | chr8_1:38281900-38281919 | Msa1192450:CDS | 25.0% |
| ! | GATTTGGAAATTGTTTATGT+TGG | - | chr8_1:38282175-38282194 | Msa1192450:CDS | 25.0% |
| !! | TTTGTTTCACCTTTTATGAT+TGG | + | chr8_1:38282427-38282446 | None:intergenic | 25.0% |
| ! | TTGTTACAACATCTAACTTA+GGG | + | chr8_1:38282492-38282511 | None:intergenic | 25.0% |
| ! | TTTGTTTGAACGCAATATAA+AGG | + | chr8_1:38282558-38282577 | None:intergenic | 25.0% |
| ! | GTAATATTCACGATTTAATG+AGG | + | chr8_1:38282582-38282601 | None:intergenic | 25.0% |
| ! | AATTATGGTAACAACAACAT+AGG | - | chr8_1:38282634-38282653 | Msa1192450:CDS | 25.0% |
| ! | TATTATCTATGTCTATTCGT+CGG | - | chr8_1:38282755-38282774 | Msa1192450:CDS | 25.0% |
| !! | TGTGATGATGAAATACTTTA+TGG | + | chr8_1:38282962-38282981 | None:intergenic | 25.0% |
| !! | AAAAAAGTGTAAGTAGACAA+AGG | + | chr8_1:38283069-38283088 | None:intergenic | 25.0% |
| !!! | TCTACTTACACTTTTTTCAT+AGG | - | chr8_1:38283072-38283091 | Msa1192450:CDS | 25.0% |
| ! | GAGACGAAAAATTCAAAATA+AGG | + | chr8_1:38283203-38283222 | None:intergenic | 25.0% |
| !!! | TTGGTTTTAAATGTTGTAGA+AGG | - | chr8_1:38283269-38283288 | Msa1192450:intron | 25.0% |
| ! | TGAGAAAAGATCATCTAATA+TGG | - | chr8_1:38283442-38283461 | Msa1192450:CDS | 25.0% |
| ! | TCTTGTCAACAAAATTGATT+TGG | + | chr8_1:38283485-38283504 | None:intergenic | 25.0% |
| AACCTTTGATGGAAGAAATT+TGG | - | chr8_1:38279172-38279191 | Msa1192450:three_prime_UTR | 30.0% | |
| TTCCAAATTTCTTCCATCAA+AGG | + | chr8_1:38279177-38279196 | None:intergenic | 30.0% | |
| CTTGAGAGATTGATCATATA+TGG | - | chr8_1:38279242-38279261 | Msa1192450:CDS | 30.0% | |
| ! | TTTCAGCATAACAAGGTTTT+TGG | + | chr8_1:38279271-38279290 | None:intergenic | 30.0% |
| CAATTATGTGGTTCATTCTA+TGG | - | chr8_1:38279383-38279402 | Msa1192450:CDS | 30.0% | |
| ATTATGTGGTTCATTCTATG+GGG | - | chr8_1:38279385-38279404 | Msa1192450:CDS | 30.0% | |
| AATCAACAAGATGATGAGAA+AGG | - | chr8_1:38279754-38279773 | Msa1192450:intron | 30.0% | |
| !!! | AGAGTGCTCTGTTTTTATAA+AGG | - | chr8_1:38279879-38279898 | Msa1192450:CDS | 30.0% |
| !!! | GAGTGCTCTGTTTTTATAAA+GGG | - | chr8_1:38279880-38279899 | Msa1192450:CDS | 30.0% |
| GATTCAAATCTTGATCAAGA+TGG | - | chr8_1:38279904-38279923 | Msa1192450:intron | 30.0% | |
| AACGAAAAGCTTAAGATCAT+AGG | + | chr8_1:38280051-38280070 | None:intergenic | 30.0% | |
| ! | TAGAAAGTGCATCATTTCTT+AGG | + | chr8_1:38280074-38280093 | None:intergenic | 30.0% |
| GAAGAAGAAGAAGAAACAAT+AGG | - | chr8_1:38280207-38280226 | Msa1192450:intron | 30.0% | |
| !! | TGTTTTTGATGAAGAACCTA+TGG | - | chr8_1:38280281-38280300 | Msa1192450:intron | 30.0% |
| AAACTAAAGCTTAAGACCAT+AGG | + | chr8_1:38280300-38280319 | None:intergenic | 30.0% | |
| !!! | GATAATGGATTTTCAAGCAT+TGG | - | chr8_1:38280339-38280358 | Msa1192450:CDS | 30.0% |
| ACTATTGGAGCATAATTTAG+AGG | - | chr8_1:38280377-38280396 | Msa1192450:CDS | 30.0% | |
| TTTCATGTTTCTCAAGAAGA+TGG | - | chr8_1:38280402-38280421 | Msa1192450:CDS | 30.0% | |
| ACATGTCAAAGAATCATCAT+TGG | + | chr8_1:38280472-38280491 | None:intergenic | 30.0% | |
| CAAGGAAGTTCAAGAATTAA+AGG | - | chr8_1:38280542-38280561 | Msa1192450:CDS | 30.0% | |
| AACATTGTATGAAGAAGAGT+TGG | - | chr8_1:38280635-38280654 | Msa1192450:CDS | 30.0% | |
| !! | GGTAATGGAACAAATCAAAT+TGG | - | chr8_1:38280719-38280738 | Msa1192450:CDS | 30.0% |
| GAATTGAAAAATGCAAGACA+AGG | - | chr8_1:38280741-38280760 | Msa1192450:intron | 30.0% | |
| ATCTTCTCTTCAATACTCAA+TGG | + | chr8_1:38280843-38280862 | None:intergenic | 30.0% | |
| !! | ATTGAGTATTGAAGAGAAGA+TGG | - | chr8_1:38280842-38280861 | Msa1192450:intron | 30.0% |
| ! | CCTTTTGAATTTCAACAATG+TGG | + | chr8_1:38280878-38280897 | None:intergenic | 30.0% |
| CCACATTGTTGAAATTCAAA+AGG | - | chr8_1:38280875-38280894 | Msa1192450:intron | 30.0% | |
| !! | AATGATCTGGTCATTTTACA+TGG | - | chr8_1:38281044-38281063 | Msa1192450:intron | 30.0% |
| TATTTGAATTAGGTCTGTTC+CGG | - | chr8_1:38281078-38281097 | Msa1192450:intron | 30.0% | |
| TCTCAAATTATTAGCAACGT+TGG | - | chr8_1:38281171-38281190 | Msa1192450:intron | 30.0% | |
| CATTAACAAGCTTCAACATT+GGG | + | chr8_1:38282144-38282163 | None:intergenic | 30.0% | |
| TCATTAACAAGCTTCAACAT+TGG | + | chr8_1:38282145-38282164 | None:intergenic | 30.0% | |
| !! | AGCTTGTTAATGAATTGCAT+AGG | - | chr8_1:38282152-38282171 | Msa1192450:CDS | 30.0% |
| ! | GCTTGTTAATGAATTGCATA+GGG | - | chr8_1:38282153-38282172 | Msa1192450:CDS | 30.0% |
| TAATGAATTGCATAGGGATT+TGG | - | chr8_1:38282159-38282178 | Msa1192450:CDS | 30.0% | |
| !!! | TTTTTCAAGTCCTTATGCAA+CGG | - | chr8_1:38282314-38282333 | Msa1192450:CDS | 30.0% |
| ! | TGACATAATTTTGAACCCTA+TGG | + | chr8_1:38282369-38282388 | None:intergenic | 30.0% |
| ! | CTTCAAGTTCCAATCATAAA+AGG | - | chr8_1:38282415-38282434 | Msa1192450:CDS | 30.0% |
| GTTGTTACAACATCTAACTT+AGG | + | chr8_1:38282493-38282512 | None:intergenic | 30.0% | |
| CAGAAATTTCAGAACTTCTA+CGG | - | chr8_1:38283003-38283022 | Msa1192450:CDS | 30.0% | |
| AGAAATTTCAGAACTTCTAC+GGG | - | chr8_1:38283004-38283023 | Msa1192450:CDS | 30.0% | |
| ! | TTTGATCTTCACTGTGTTTT+TGG | + | chr8_1:38283347-38283366 | None:intergenic | 30.0% |
| TGTGAGATTTCAGCATAACA+AGG | + | chr8_1:38279278-38279297 | None:intergenic | 35.0% | |
| !! | TGAAAACTTGATTTGGGCAT+TGG | - | chr8_1:38279338-38279357 | Msa1192450:CDS | 35.0% |
| TGATCCTCACATACATATTC+AGG | - | chr8_1:38279409-38279428 | Msa1192450:CDS | 35.0% | |
| CAAACCTGAATATGTATGTG+AGG | + | chr8_1:38279416-38279435 | None:intergenic | 35.0% | |
| TATAGAGAGTGAAGAAAGAG+AGG | - | chr8_1:38279690-38279709 | Msa1192450:intron | 35.0% | |
| ATAGAGAGTGAAGAAAGAGA+GGG | - | chr8_1:38279691-38279710 | Msa1192450:intron | 35.0% | |
| ACAAGATGATGAGAAAGGAA+AGG | - | chr8_1:38279759-38279778 | Msa1192450:intron | 35.0% | |
| CAAGATGATGAGAAAGGAAA+GGG | - | chr8_1:38279760-38279779 | Msa1192450:intron | 35.0% | |
| AAAGGAAAGGGTGAAAAAGA+TGG | - | chr8_1:38279772-38279791 | Msa1192450:intron | 35.0% | |
| !! | AGAGTGCTCTGTTTTGTTAA+AGG | - | chr8_1:38280137-38280156 | Msa1192450:intron | 35.0% |
| !! | GAGTGCTCTGTTTTGTTAAA+GGG | - | chr8_1:38280138-38280157 | Msa1192450:intron | 35.0% |
| ! | GATTCCGATTTTCATCTTGA+TGG | - | chr8_1:38280162-38280181 | Msa1192450:intron | 35.0% |
| TCCACCATCAAGATGAAAAT+CGG | + | chr8_1:38280169-38280188 | None:intergenic | 35.0% | |
| GGTTTGATTCTACAACAAGT+AGG | - | chr8_1:38280229-38280248 | Msa1192450:intron | 35.0% | |
| !! | ATTTGAGTGTGAAAGTGTCA+AGG | - | chr8_1:38280524-38280543 | Msa1192450:CDS | 35.0% |
| ATGTGATAGAGAAGAAGACT+CGG | - | chr8_1:38280578-38280597 | Msa1192450:CDS | 35.0% | |
| TGAAGAAGAGTTGGATGAAA+TGG | - | chr8_1:38280644-38280663 | Msa1192450:CDS | 35.0% | |
| !! | GTTGGATGAAATGGATTATG+AGG | - | chr8_1:38280653-38280672 | Msa1192450:CDS | 35.0% |
| ATGATGAGGATGAATTTGAG+TGG | - | chr8_1:38280685-38280704 | Msa1192450:CDS | 35.0% | |
| TGATGAGGATGAATTTGAGT+GGG | - | chr8_1:38280686-38280705 | Msa1192450:CDS | 35.0% | |
| TTGAAAAATGCAAGACAAGG+AGG | - | chr8_1:38280744-38280763 | Msa1192450:intron | 35.0% | |
| !! | ACTTGCAACAATTTTGGAAG+AGG | - | chr8_1:38280767-38280786 | Msa1192450:intron | 35.0% |
| ! | ACTCGATGTCTTGAATTTTC+AGG | - | chr8_1:38280929-38280948 | Msa1192450:intron | 35.0% |
| !! | TGGTCATTTTACATGGAACA+CGG | - | chr8_1:38281051-38281070 | Msa1192450:intron | 35.0% |
| ACACGGACACTATTTGAATT+AGG | - | chr8_1:38281068-38281087 | Msa1192450:intron | 35.0% | |
| GTCAAATGCATATATGCACA+AGG | + | chr8_1:38281621-38281640 | None:intergenic | 35.0% | |
| ! | TTTTGATCAGCCACTAAAGA+TGG | + | chr8_1:38281653-38281672 | None:intergenic | 35.0% |
| TGTTTGTTTGTGTGAATGCA+CGG | - | chr8_1:38281777-38281796 | Msa1192450:intron | 35.0% | |
| AAAGTTGCATTTCAGCTTTG+AGG | - | chr8_1:38281933-38281952 | Msa1192450:CDS | 35.0% | |
| TTGAAGAAGACCTGAATCAA+GGG | + | chr8_1:38282008-38282027 | None:intergenic | 35.0% | |
| TTCAGGTCTTCTTCAACTAA+AGG | - | chr8_1:38282012-38282031 | Msa1192450:CDS | 35.0% | |
| TTTCCCAAGAGAGACAAATT+TGG | + | chr8_1:38282201-38282220 | None:intergenic | 35.0% | |
| AAATTATACCTACGAAGTCG+TGG | + | chr8_1:38282274-38282293 | None:intergenic | 35.0% | |
| CGTAGGTATAATTTAGTTGC+TGG | - | chr8_1:38282280-38282299 | Msa1192450:CDS | 35.0% | |
| ATACTTGTGTTAGTGTCTCA+CGG | - | chr8_1:38282691-38282710 | Msa1192450:CDS | 35.0% | |
| AAAAATTAAGTGGGGTGAAG+AGG | - | chr8_1:38282839-38282858 | Msa1192450:CDS | 35.0% | |
| AAACTTCCAAAACACTTGCA+TGG | + | chr8_1:38282907-38282926 | None:intergenic | 35.0% | |
| TCATCATCACAAAGAGAATG+AGG | - | chr8_1:38282971-38282990 | Msa1192450:CDS | 35.0% | |
| CTCAAGGAAAGATTAAGAAG+TGG | - | chr8_1:38283300-38283319 | Msa1192450:intron | 35.0% | |
| GAAGTGGAAATTGCATAGTA+AGG | - | chr8_1:38283316-38283335 | Msa1192450:intron | 35.0% | |
| CAGTGAAGATCAAATTCAAC+TGG | - | chr8_1:38283353-38283372 | Msa1192450:CDS | 35.0% | |
| ! | AGGATTGAGGTTGATTTCAA+AGG | - | chr8_1:38283401-38283420 | Msa1192450:CDS | 35.0% |
| TGTTGACAAGAAGATTCAAG+TGG | - | chr8_1:38283494-38283513 | Msa1192450:exon | 35.0% | |
| ! | AGAAACAGAGTACTCTGTTC+TGG | - | chr8_1:38279714-38279733 | Msa1192450:intron | 40.0% |
| ! | TCCGATTTTCATCTTGATGG+TGG | - | chr8_1:38280165-38280184 | Msa1192450:intron | 40.0% |
| TGAGGAAGATGAAGATGATG+AGG | - | chr8_1:38280671-38280690 | Msa1192450:CDS | 40.0% | |
| ATTTGAGTGGGAGAATGATG+AGG | - | chr8_1:38280698-38280717 | Msa1192450:CDS | 40.0% | |
| ! | AGGAGGACTTGCAACAATTT+TGG | - | chr8_1:38280761-38280780 | Msa1192450:intron | 40.0% |
| ! | TACATGTGTCGATGTTGTGT+CGG | + | chr8_1:38281129-38281148 | None:intergenic | 40.0% |
| TACGAATACTGATCACGACA+CGG | + | chr8_1:38281208-38281227 | None:intergenic | 40.0% | |
| AATCACAAAGCCACTGATAG+AGG | - | chr8_1:38281519-38281538 | Msa1192450:intron | 40.0% | |
| ! | TGCACAAGGTTGACTTTGAA+TGG | + | chr8_1:38281607-38281626 | None:intergenic | 40.0% |
| ! | ACCTGTTTTACCCTTGATTC+AGG | - | chr8_1:38281995-38282014 | Msa1192450:CDS | 40.0% |
| ACCTGAATCAAGGGTAAAAC+AGG | + | chr8_1:38281999-38282018 | None:intergenic | 40.0% | |
| GTTGAAGAAGACCTGAATCA+AGG | + | chr8_1:38282009-38282028 | None:intergenic | 40.0% | |
| !! | TAGAGGCTTGACTTGTTTGA+CGG | + | chr8_1:38282071-38282090 | None:intergenic | 40.0% |
| ! | AAATTCTGAGGGATCACTAG+AGG | + | chr8_1:38282088-38282107 | None:intergenic | 40.0% |
| TAGTGATCCCTCAGAATTTG+TGG | - | chr8_1:38282089-38282108 | Msa1192450:CDS | 40.0% | |
| ! | TTGTTCTTTTGAGCTTTGCG+TGG | + | chr8_1:38282115-38282134 | None:intergenic | 40.0% |
| TTGGCCAAATTTGTCTCTCT+TGG | - | chr8_1:38282194-38282213 | Msa1192450:CDS | 40.0% | |
| TGGCCAAATTTGTCTCTCTT+GGG | - | chr8_1:38282195-38282214 | Msa1192450:CDS | 40.0% | |
| TCTCTTGGGAAATCCTATGT+TGG | - | chr8_1:38282209-38282228 | Msa1192450:CDS | 40.0% | |
| ! | TTTTCTCATGCTGCCAACAT+AGG | + | chr8_1:38282225-38282244 | None:intergenic | 40.0% |
| AACCATTTCAGCAAGACCAT+AGG | - | chr8_1:38282350-38282369 | Msa1192450:CDS | 40.0% | |
| ACCATTTCAGCAAGACCATA+GGG | - | chr8_1:38282351-38282370 | Msa1192450:CDS | 40.0% | |
| TAAACTTTCCGACGCAATTG+TGG | - | chr8_1:38282520-38282539 | Msa1192450:CDS | 40.0% | |
| GAATATTACAGCTGCCATTG+CGG | - | chr8_1:38282593-38282612 | Msa1192450:CDS | 40.0% | |
| ! | ATTGTTGTTCACAACCGCAA+TGG | + | chr8_1:38282610-38282629 | None:intergenic | 40.0% |
| !! | AGGATGGAATTGGTAGTGAA+AGG | - | chr8_1:38282859-38282878 | Msa1192450:CDS | 40.0% |
| ! | AGGAATCCATGCAAGTGTTT+TGG | - | chr8_1:38282898-38282917 | Msa1192450:CDS | 40.0% |
| TCACAAAGAGAATGAGGTCA+AGG | - | chr8_1:38282977-38282996 | Msa1192450:CDS | 40.0% | |
| GTAGAAGGAGAGAAAACTCA+AGG | - | chr8_1:38283284-38283303 | Msa1192450:intron | 40.0% | |
| TTCTAGCACAAGTAGGATTG+AGG | - | chr8_1:38283388-38283407 | Msa1192450:CDS | 40.0% | |
| GAAGCTGACTGTAATCAACA+AGG | + | chr8_1:38283540-38283559 | None:intergenic | 40.0% | |
| GATGGATCAGTTCACAGAAG+AGG | - | chr8_1:38279630-38279649 | Msa1192450:intron | 45.0% | |
| ! | AACAGAGTACTCTGTTCTGG+TGG | - | chr8_1:38279717-38279736 | Msa1192450:intron | 45.0% |
| TTGTTGAGCGCGAATACGAA+AGG | - | chr8_1:38280607-38280626 | Msa1192450:CDS | 45.0% | |
| TGTTGAGCGCGAATACGAAA+GGG | - | chr8_1:38280608-38280627 | Msa1192450:CDS | 45.0% | |
| GTGGGAGAATGATGAGGTAA+TGG | - | chr8_1:38280704-38280723 | Msa1192450:CDS | 45.0% | |
| TTTCAGGCCATGCATGCAAT+AGG | - | chr8_1:38280945-38280964 | Msa1192450:intron | 45.0% | |
| TGTAGACTTGCCTCTATCAG+TGG | + | chr8_1:38281532-38281551 | None:intergenic | 45.0% | |
| ATGATTCTCCACGACTTCGT+AGG | - | chr8_1:38282263-38282282 | Msa1192450:CDS | 45.0% | |
| CCTCAAAGAACCGTTGCATA+AGG | + | chr8_1:38282327-38282346 | None:intergenic | 45.0% | |
| CCTTATGCAACGGTTCTTTG+AGG | - | chr8_1:38282324-38282343 | Msa1192450:CDS | 45.0% | |
| ! | ACCCTATGGTCTTGCTGAAA+TGG | + | chr8_1:38282355-38282374 | None:intergenic | 45.0% |
| ! | GCGTCGGAAAGTTTAAAACG+AGG | + | chr8_1:38282515-38282534 | None:intergenic | 45.0% |
| CAATGCAACCACAATTGCGT+CGG | + | chr8_1:38282531-38282550 | None:intergenic | 45.0% | |
| ATTAAGTGGGGTGAAGAGGA+TGG | - | chr8_1:38282843-38282862 | Msa1192450:CDS | 45.0% | |
| TAGGGACTAAACTTGACGAC+TGG | + | chr8_1:38283227-38283246 | None:intergenic | 45.0% | |
| !! | GAGCAGTTTCTAGCACAAGT+AGG | - | chr8_1:38283381-38283400 | Msa1192450:CDS | 45.0% |
| !! | GAAATAAAAAATAAAAAATA+AGG | + | chr8_1:38279530-38279549 | None:intergenic | 5.0% |
| !!! | TTATATTTTATATGTAAATT+TGG | + | chr8_1:38281806-38281825 | None:intergenic | 5.0% |
| !!! | AATTATTCATTTTTTTTATT+TGG | - | chr8_1:38283250-38283269 | Msa1192450:intron | 5.0% |
| !! | TTTGGGCATTGGCTTCTGCA+TGG | - | chr8_1:38279349-38279368 | Msa1192450:CDS | 50.0% |
| GCTCTCACCTATTGCATGCA+TGG | + | chr8_1:38280955-38280974 | None:intergenic | 50.0% | |
| ACGCGACATATGTCTGACAC+CGG | + | chr8_1:38281100-38281119 | None:intergenic | 50.0% | |
| CGAAGTCGCACCATCTTTAG+TGG | - | chr8_1:38281640-38281659 | Msa1192450:intron | 50.0% | |
| TGCGTGGCCACAAATTCTGA+GGG | + | chr8_1:38282099-38282118 | None:intergenic | 50.0% | |
| TTGCGTGGCCACAAATTCTG+AGG | + | chr8_1:38282100-38282119 | None:intergenic | 50.0% | |
| TGGGGTGAAGAGGATGGAAT+TGG | - | chr8_1:38282849-38282868 | Msa1192450:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 38279168 | 38283600 | 38279168 | ID=Msa1192450;Name=Msa1192450 |
| chr8_1 | mRNA | 38279168 | 38283600 | 38279168 | ID=Msa1192450-mRNA-1;Parent=Msa1192450;Name=Msa1192450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=93|0.5|0.6|1|0.5|0.8|5|55|789 |
| chr8_1 | exon | 38279168 | 38279480 | 38279168 | ID=Msa1192450-mRNA-1:exon:12476;Parent=Msa1192450-mRNA-1 |
| chr8_1 | exon | 38279803 | 38279909 | 38279803 | ID=Msa1192450-mRNA-1:exon:12475;Parent=Msa1192450-mRNA-1 |
| chr8_1 | exon | 38280332 | 38280751 | 38280332 | ID=Msa1192450-mRNA-1:exon:12474;Parent=Msa1192450-mRNA-1 |
| chr8_1 | exon | 38281802 | 38283216 | 38281802 | ID=Msa1192450-mRNA-1:exon:12473;Parent=Msa1192450-mRNA-1 |
| chr8_1 | exon | 38283338 | 38283600 | 38283338 | ID=Msa1192450-mRNA-1:exon:12472;Parent=Msa1192450-mRNA-1 |
| chr8_1 | five_prime_UTR | 38283508 | 38283600 | 38283508 | ID=Msa1192450-mRNA-1:five_prime_utr;Parent=Msa1192450-mRNA-1 |
| chr8_1 | CDS | 38283338 | 38283507 | 38283338 | ID=Msa1192450-mRNA-1:cds;Parent=Msa1192450-mRNA-1 |
| chr8_1 | CDS | 38281802 | 38283216 | 38281802 | ID=Msa1192450-mRNA-1:cds;Parent=Msa1192450-mRNA-1 |
| chr8_1 | CDS | 38280332 | 38280751 | 38280332 | ID=Msa1192450-mRNA-1:cds;Parent=Msa1192450-mRNA-1 |
| chr8_1 | CDS | 38279803 | 38279909 | 38279803 | ID=Msa1192450-mRNA-1:cds;Parent=Msa1192450-mRNA-1 |
| chr8_1 | CDS | 38279223 | 38279480 | 38279223 | ID=Msa1192450-mRNA-1:cds;Parent=Msa1192450-mRNA-1 |
| chr8_1 | three_prime_UTR | 38279168 | 38279222 | 38279168 | ID=Msa1192450-mRNA-1:three_prime_utr;Parent=Msa1192450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
