Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247030 | XP_024627699.1 | 84.752 | 846 | 74 | 7 | 1 | 801 | 1 | 836 | 0.0 | 1239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039330 | Msa1247030 | 0.802678 | 5.005400e-49 | -8.615850e-47 |
| Msa0048000 | Msa1247030 | 0.820902 | 5.366687e-53 | -8.615850e-47 |
| Msa0051460 | Msa1247030 | 0.802055 | 6.727302e-49 | -8.615850e-47 |
| Msa0063000 | Msa1247030 | 0.801816 | 7.533019e-49 | -8.615850e-47 |
| Msa0090100 | Msa1247030 | 0.802128 | 6.498736e-49 | -8.615850e-47 |
| Msa0102120 | Msa1247030 | 0.818148 | 2.280448e-52 | -8.615850e-47 |
| Msa0102750 | Msa1247030 | 0.801062 | 1.075002e-48 | -8.615850e-47 |
| Msa0607540 | Msa1247030 | 0.818180 | 2.242485e-52 | -8.615850e-47 |
| Msa0613460 | Msa1247030 | 0.808063 | 3.722138e-50 | -8.615850e-47 |
| Msa0626280 | Msa1247030 | 0.806481 | 8.054549e-50 | -8.615850e-47 |
| Msa0626990 | Msa1247030 | 0.806898 | 6.577276e-50 | -8.615850e-47 |
| Msa0627350 | Msa1247030 | 0.811561 | 6.584143e-51 | -8.615850e-47 |
| Msa0647830 | Msa1247030 | 0.826884 | 2.123596e-54 | -8.615850e-47 |
| Msa0657970 | Msa1247030 | 0.802925 | 4.451675e-49 | -8.615850e-47 |
| Msa0658570 | Msa1247030 | 0.850451 | 1.683469e-60 | -8.615850e-47 |
| Msa0690440 | Msa1247030 | 0.821353 | 4.224748e-53 | -8.615850e-47 |
| Msa0691050 | Msa1247030 | 0.810695 | 1.014475e-50 | -8.615850e-47 |
| Msa0693380 | Msa1247030 | 0.834692 | 2.587654e-56 | -8.615850e-47 |
| Msa0698930 | Msa1247030 | 0.814690 | 1.355041e-51 | -8.615850e-47 |
| Msa0703490 | Msa1247030 | 0.835360 | 1.756235e-56 | -8.615850e-47 |
| Msa0715110 | Msa1247030 | 0.816076 | 6.663129e-52 | -8.615850e-47 |
| Msa0735160 | Msa1247030 | 0.838826 | 2.283621e-57 | -8.615850e-47 |
| Msa0738940 | Msa1247030 | 0.820504 | 6.623468e-53 | -8.615850e-47 |
| Msa0757050 | Msa1247030 | 0.806036 | 9.994246e-50 | -8.615850e-47 |
| Msa0757080 | Msa1247030 | 0.834811 | 2.414656e-56 | -8.615850e-47 |
| Msa0766630 | Msa1247030 | 0.811379 | 7.210120e-51 | -8.615850e-47 |
| Msa0773310 | Msa1247030 | 0.819650 | 1.038964e-52 | -8.615850e-47 |
| Msa0798030 | Msa1247030 | 0.817498 | 3.195726e-52 | -8.615850e-47 |
| Msa0807030 | Msa1247030 | 0.802011 | 6.869341e-49 | -8.615850e-47 |
| Msa0810760 | Msa1247030 | 0.830831 | 2.353469e-55 | -8.615850e-47 |
| Msa0818110 | Msa1247030 | 0.827261 | 1.725065e-54 | -8.615850e-47 |
| Msa0827470 | Msa1247030 | 0.805008 | 1.642344e-49 | -8.615850e-47 |
| Msa0828540 | Msa1247030 | 0.834222 | 3.395503e-56 | -8.615850e-47 |
| Msa0169820 | Msa1247030 | 0.812184 | 4.817556e-51 | -8.615850e-47 |
| Msa0170140 | Msa1247030 | 0.813903 | 2.022355e-51 | -8.615850e-47 |
| Msa0188830 | Msa1247030 | 0.812737 | 3.647425e-51 | -8.615850e-47 |
| Msa0201070 | Msa1247030 | 0.800010 | 1.761605e-48 | -8.615850e-47 |
| Msa0202720 | Msa1247030 | 0.801771 | 7.694838e-49 | -8.615850e-47 |
| Msa0217400 | Msa1247030 | 0.824613 | 7.341772e-54 | -8.615850e-47 |
| Msa0234440 | Msa1247030 | 0.833494 | 5.164233e-56 | -8.615850e-47 |
| Msa1229600 | Msa1247030 | 0.816739 | 4.735057e-52 | -8.615850e-47 |
| Msa1233500 | Msa1247030 | 0.815600 | 8.509336e-52 | -8.615850e-47 |
| Msa1233890 | Msa1247030 | 0.804077 | 2.568508e-49 | -8.615850e-47 |
| Msa1247030 | Msa1267610 | 0.814130 | 1.802359e-51 | -8.615850e-47 |
| Msa1247030 | Msa1288340 | 0.885919 | 5.366517e-72 | -8.615850e-47 |
| Msa1247030 | Msa1291660 | 0.813594 | 2.365161e-51 | -8.615850e-47 |
| Msa1247030 | Msa1298260 | 0.800522 | 1.385295e-48 | -8.615850e-47 |
| Msa1247030 | Msa1299070 | 0.818860 | 1.571936e-52 | -8.615850e-47 |
| Msa1247030 | Msa1310210 | 0.816171 | 6.345231e-52 | -8.615850e-47 |
| Msa1247030 | Msa1314340 | 0.808208 | 3.468049e-50 | -8.615850e-47 |
| Msa1247030 | Msa1359800 | 0.812212 | 4.749196e-51 | -8.615850e-47 |
| Msa1247030 | Msa1376890 | 0.849191 | 3.788618e-60 | -8.615850e-47 |
| Msa1247030 | Msa1379850 | 0.841726 | 3.989180e-58 | -8.615850e-47 |
| Msa1247030 | Msa1392260 | 0.824919 | 6.218505e-54 | -8.615850e-47 |
| Msa1247030 | Msa1393410 | 0.823147 | 1.620025e-53 | -8.615850e-47 |
| Msa1247030 | Msa1397260 | 0.828048 | 1.116262e-54 | -8.615850e-47 |
| Msa1247030 | Msa1401140 | 0.821371 | 4.184376e-53 | -8.615850e-47 |
| Msa1247030 | Msa1404540 | 0.820422 | 6.918055e-53 | -8.615850e-47 |
| Msa1247030 | Msa1404670 | 0.812319 | 4.500061e-51 | -8.615850e-47 |
| Msa1247030 | Msa1410210 | 0.803127 | 4.042308e-49 | -8.615850e-47 |
| Msa1247030 | Msa1429900 | 0.811651 | 6.291764e-51 | -8.615850e-47 |
| Msa1247030 | Msa1431060 | 0.816234 | 6.143853e-52 | -8.615850e-47 |
| Msa1247030 | Msa1435400 | 0.824760 | 6.776696e-54 | -8.615850e-47 |
| Msa1247030 | Msa1435420 | 0.824044 | 9.987875e-54 | -8.615850e-47 |
| Msa1247030 | Msa1440940 | 0.840256 | 9.702486e-58 | -8.615850e-47 |
| Msa1247030 | Msa1451620 | -0.822997 | 1.755818e-53 | -8.615850e-47 |
| Msa1247030 | Msa1455390 | 0.811586 | 6.502783e-51 | -8.615850e-47 |
| Msa1247030 | Msa1458550 | 0.808235 | 3.421274e-50 | -8.615850e-47 |
| Msa0365490 | Msa1247030 | 0.826700 | 2.349183e-54 | -8.615850e-47 |
| Msa0376590 | Msa1247030 | 0.853595 | 2.154190e-61 | -8.615850e-47 |
| Msa0388030 | Msa1247030 | -0.815071 | 1.115552e-51 | -8.615850e-47 |
| Msa0409200 | Msa1247030 | 0.825781 | 3.886891e-54 | -8.615850e-47 |
| Msa0422500 | Msa1247030 | 0.802195 | 6.295164e-49 | -8.615850e-47 |
| Msa0436370 | Msa1247030 | 0.840716 | 7.354491e-58 | -8.615850e-47 |
| Msa0438050 | Msa1247030 | 0.805688 | 1.183007e-49 | -8.615850e-47 |
| Msa0445280 | Msa1247030 | 0.808628 | 2.821325e-50 | -8.615850e-47 |
| Msa0448550 | Msa1247030 | -0.856443 | 3.207337e-62 | -8.615850e-47 |
| Msa0450350 | Msa1247030 | 0.803382 | 3.580835e-49 | -8.615850e-47 |
| Msa0458440 | Msa1247030 | 0.839066 | 1.978357e-57 | -8.615850e-47 |
| Msa0464900 | Msa1247030 | 0.806627 | 7.502956e-50 | -8.615850e-47 |
| Msa0473240 | Msa1247030 | 0.824379 | 8.332241e-54 | -8.615850e-47 |
| Msa0480600 | Msa1247030 | 0.813751 | 2.184699e-51 | -8.615850e-47 |
| Msa0990960 | Msa1247030 | 0.814194 | 1.744478e-51 | -8.615850e-47 |
| Msa1001200 | Msa1247030 | 0.815202 | 1.043400e-51 | -8.615850e-47 |
| Msa1005410 | Msa1247030 | 0.806866 | 6.679385e-50 | -8.615850e-47 |
| Msa1006850 | Msa1247030 | 0.822277 | 2.582156e-53 | -8.615850e-47 |
| Msa1015790 | Msa1247030 | 0.814815 | 1.271204e-51 | -8.615850e-47 |
| Msa1021510 | Msa1247030 | 0.818442 | 1.955667e-52 | -8.615850e-47 |
| Msa1041730 | Msa1247030 | 0.804120 | 2.515834e-49 | -8.615850e-47 |
| Msa1068200 | Msa1247030 | -0.846231 | 2.473446e-59 | -8.615850e-47 |
| Msa1075220 | Msa1247030 | -0.812545 | 4.017527e-51 | -8.615850e-47 |
| Msa1080160 | Msa1247030 | 0.812914 | 3.334877e-51 | -8.615850e-47 |
| Msa1082500 | Msa1247030 | 0.847015 | 1.511008e-59 | -8.615850e-47 |
| Msa1084260 | Msa1247030 | 0.858552 | 7.616802e-63 | -8.615850e-47 |
| Msa1100480 | Msa1247030 | 0.814078 | 1.850098e-51 | -8.615850e-47 |
| Msa1105500 | Msa1247030 | 0.813645 | 2.304785e-51 | -8.615850e-47 |
| Msa0243710 | Msa1247030 | 0.801804 | 7.574234e-49 | -8.615850e-47 |
| Msa0258760 | Msa1247030 | 0.815950 | 7.110388e-52 | -8.615850e-47 |
| Msa0260810 | Msa1247030 | 0.826446 | 2.701027e-54 | -8.615850e-47 |
| Msa0266000 | Msa1247030 | -0.849821 | 2.528351e-60 | -8.615850e-47 |
| Msa0272730 | Msa1247030 | 0.819046 | 1.426615e-52 | -8.615850e-47 |
| Msa0276920 | Msa1247030 | 0.811748 | 5.995519e-51 | -8.615850e-47 |
| Msa0296560 | Msa1247030 | 0.817747 | 2.808280e-52 | -8.615850e-47 |
| Msa0313990 | Msa1247030 | 0.807281 | 5.456044e-50 | -8.615850e-47 |
| Msa0323080 | Msa1247030 | 0.803060 | 4.175162e-49 | -8.615850e-47 |
| Msa0331920 | Msa1247030 | 0.807059 | 6.079779e-50 | -8.615850e-47 |
| Msa0335040 | Msa1247030 | 0.817932 | 2.551887e-52 | -8.615850e-47 |
| Msa0338110 | Msa1247030 | 0.809178 | 2.151918e-50 | -8.615850e-47 |
| Msa0342070 | Msa1247030 | 0.813768 | 2.165032e-51 | -8.615850e-47 |
| Msa0344690 | Msa1247030 | -0.802740 | 4.860042e-49 | -8.615850e-47 |
| Msa0344870 | Msa1247030 | 0.802774 | 4.781587e-49 | -8.615850e-47 |
| Msa0347650 | Msa1247030 | 0.801767 | 7.709577e-49 | -8.615850e-47 |
| Msa0350000 | Msa1247030 | 0.804191 | 2.431667e-49 | -8.615850e-47 |
| Msa0354800 | Msa1247030 | -0.825666 | 4.138838e-54 | -8.615850e-47 |
| Msa0356890 | Msa1247030 | -0.822157 | 2.752674e-53 | -8.615850e-47 |
| Msa1112370 | Msa1247030 | 0.810319 | 1.223064e-50 | -8.615850e-47 |
| Msa1125080 | Msa1247030 | 0.803862 | 2.847118e-49 | -8.615850e-47 |
| Msa1135880 | Msa1247030 | 0.800248 | 1.575588e-48 | -8.615850e-47 |
| Msa1139000 | Msa1247030 | -0.823549 | 1.305075e-53 | -8.615850e-47 |
| Msa1156340 | Msa1247030 | -0.831575 | 1.544794e-55 | -8.615850e-47 |
| Msa1162550 | Msa1247030 | -0.826023 | 3.405860e-54 | -8.615850e-47 |
| Msa1167220 | Msa1247030 | 0.807511 | 4.877321e-50 | -8.615850e-47 |
| Msa1192450 | Msa1247030 | 0.850157 | 2.035368e-60 | -8.615850e-47 |
| Msa1192990 | Msa1247030 | 0.833106 | 6.453143e-56 | -8.615850e-47 |
| Msa0484780 | Msa1247030 | 0.838314 | 3.095892e-57 | -8.615850e-47 |
| Msa0492880 | Msa1247030 | 0.817072 | 3.985742e-52 | -8.615850e-47 |
| Msa0498220 | Msa1247030 | 0.825543 | 4.427150e-54 | -8.615850e-47 |
| Msa0516370 | Msa1247030 | 0.858688 | 6.939470e-63 | -8.615850e-47 |
| Msa0526100 | Msa1247030 | -0.821963 | 3.053669e-53 | -8.615850e-47 |
| Msa0530650 | Msa1247030 | 0.815742 | 7.911358e-52 | -8.615850e-47 |
| Msa0532350 | Msa1247030 | 0.802912 | 4.478618e-49 | -8.615850e-47 |
| Msa0535210 | Msa1247030 | 0.802795 | 4.736245e-49 | -8.615850e-47 |
| Msa0536220 | Msa1247030 | 0.803380 | 3.583722e-49 | -8.615850e-47 |
| Msa0553460 | Msa1247030 | 0.832042 | 1.184508e-55 | -8.615850e-47 |
| Msa0558690 | Msa1247030 | 0.813658 | 2.289787e-51 | -8.615850e-47 |
| Msa0559190 | Msa1247030 | 0.805815 | 1.112660e-49 | -8.615850e-47 |
| Msa0567020 | Msa1247030 | 0.844994 | 5.355135e-59 | -8.615850e-47 |
| Msa0572420 | Msa1247030 | 0.829571 | 4.779130e-55 | -8.615850e-47 |
| Msa0572480 | Msa1247030 | 0.847793 | 9.235679e-60 | -8.615850e-47 |
| Msa0574850 | Msa1247030 | 0.824496 | 7.823625e-54 | -8.615850e-47 |
| Msa0580000 | Msa1247030 | 0.820786 | 5.705635e-53 | -8.615850e-47 |
| Msa0585700 | Msa1247030 | 0.805830 | 1.104713e-49 | -8.615850e-47 |
| Msa0870530 | Msa1247030 | 0.831041 | 2.089955e-55 | -8.615850e-47 |
| Msa0874630 | Msa1247030 | 0.813610 | 2.345583e-51 | -8.615850e-47 |
| Msa0891040 | Msa1247030 | 0.812372 | 4.383016e-51 | -8.615850e-47 |
| Msa0903700 | Msa1247030 | 0.807940 | 3.954970e-50 | -8.615850e-47 |
| Msa0907070 | Msa1247030 | 0.831719 | 1.423004e-55 | -8.615850e-47 |
| Msa0936210 | Msa1247030 | 0.827863 | 1.237087e-54 | -8.615850e-47 |
| Msa0973150 | Msa1247030 | 0.814330 | 1.627645e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247030 | MtrunA17_Chr8g0361681 | 84.752 | 846 | 74 | 7 | 1 | 801 | 1 | 836 | 0.0 | 1239 |
| Msa1247030 | MtrunA17_Chr5g0417111 | 53.479 | 503 | 150 | 14 | 370 | 801 | 420 | 909 | 3.61e-145 | 449 |
| Msa1247030 | MtrunA17_Chr7g0217181 | 39.344 | 427 | 200 | 9 | 421 | 800 | 330 | 744 | 1.21e-87 | 293 |
| Msa1247030 | MtrunA17_Chr8g0361691 | 63.514 | 148 | 38 | 2 | 584 | 716 | 1 | 147 | 2.26e-53 | 182 |
| Msa1247030 | MtrunA17_Chr4g0000281 | 27.020 | 396 | 229 | 9 | 444 | 801 | 52 | 425 | 5.28e-29 | 120 |
| Msa1247030 | MtrunA17_Chr8g0391071 | 26.295 | 251 | 133 | 6 | 592 | 799 | 318 | 559 | 1.25e-13 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1247030 | AT5G39785.1 | 42.574 | 404 | 173 | 10 | 453 | 801 | 207 | 606 | 2.43e-90 | 297 |
| Msa1247030 | AT5G39785.3 | 42.574 | 404 | 173 | 10 | 453 | 801 | 207 | 606 | 2.43e-90 | 297 |
| Msa1247030 | AT5G39785.5 | 42.574 | 404 | 173 | 10 | 453 | 801 | 207 | 606 | 2.43e-90 | 297 |
| Msa1247030 | AT5G39785.2 | 41.975 | 405 | 175 | 9 | 453 | 801 | 207 | 607 | 1.34e-89 | 295 |
| Msa1247030 | AT5G39785.4 | 41.026 | 429 | 169 | 12 | 453 | 801 | 207 | 631 | 2.36e-84 | 281 |
| Msa1247030 | AT1G69610.3 | 42.711 | 391 | 165 | 10 | 454 | 801 | 218 | 592 | 2.48e-82 | 275 |
| Msa1247030 | AT1G69610.1 | 42.711 | 391 | 165 | 10 | 454 | 801 | 262 | 636 | 2.29e-81 | 274 |
| Msa1247030 | AT1G69610.2 | 42.711 | 391 | 165 | 10 | 454 | 801 | 263 | 637 | 2.32e-81 | 274 |
| Msa1247030 | AT3G20260.1 | 30.400 | 250 | 134 | 4 | 588 | 801 | 192 | 437 | 2.79e-27 | 116 |
| Msa1247030 | AT3G01175.1 | 27.312 | 465 | 228 | 19 | 414 | 800 | 143 | 575 | 5.52e-19 | 92.0 |
| Msa1247030 | AT1G73850.2 | 24.219 | 256 | 138 | 7 | 594 | 800 | 385 | 633 | 3.89e-18 | 89.7 |
| Msa1247030 | AT1G73850.1 | 24.219 | 256 | 138 | 7 | 594 | 800 | 385 | 633 | 3.89e-18 | 89.7 |
Find 105 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTTTGATGGAAGAAATT+TGG | 0.171845 | 8_2:+39283836 | Msa1247030:five_prime_UTR |
| CTTGAGAGATTGATCATATA+TGG | 0.188250 | 8_2:+39283906 | Msa1247030:exon |
| AGGAGGACTTGCAACAATTT+TGG | 0.237380 | 8_2:+39285451 | Msa1247030:CDS |
| TTGGCCAAATTTGTCTTTCT+TGG | 0.245998 | 8_2:+39286954 | Msa1247030:CDS |
| ACACAAAGATATTGGTGTTT+TGG | 0.247835 | 8_2:+39284953 | Msa1247030:CDS |
| CATGATTCATGAACCTTTGA+TGG | 0.248335 | 8_2:+39283825 | None:intergenic |
| CTTCAAGTTCCAATCATAAA+AGG | 0.251590 | 8_2:+39287175 | Msa1247030:CDS |
| TCTTTGACATGTAAGATTAT+AGG | 0.254165 | 8_2:+39285170 | Msa1247030:CDS |
| TATCATAGGAAACATTTCTT+AGG | 0.255049 | 8_2:-39285007 | None:intergenic |
| TGAAAATATAAAGGGTTCTT+TGG | 0.260528 | 8_2:+39284779 | Msa1247030:CDS |
| TTTCCCAAGAAAGACAAATT+TGG | 0.260867 | 8_2:-39286958 | None:intergenic |
| TGATCCTCACATACATATTC+AGG | 0.265707 | 8_2:+39284073 | Msa1247030:CDS |
| TAGAAAGTGCATCATTTCTT+AGG | 0.269103 | 8_2:-39284752 | None:intergenic |
| TTCTAGCATTGAAAATATAA+AGG | 0.270515 | 8_2:+39284770 | Msa1247030:CDS |
| TAATGAACTGCATAGGGATT+TGG | 0.294204 | 8_2:+39286919 | Msa1247030:CDS |
| TTGTCTATGAAAACTTGATT+TGG | 0.297848 | 8_2:+39283995 | Msa1247030:CDS |
| AGGAATCCATGCAAGTGTTT+TGG | 0.298411 | 8_2:+39287658 | Msa1247030:CDS |
| TTACTTCAACACAAAGATAT+TGG | 0.310714 | 8_2:+39284945 | Msa1247030:CDS |
| TCTTGTCAACAAAATTGATT+TGG | 0.318514 | 8_2:-39288241 | None:intergenic |
| TGAGGAAGTTCAAGATTTAA+AGG | 0.318925 | 8_2:+39285232 | Msa1247030:CDS |
| GGTAATGGAACAAATCAAAT+TGG | 0.320087 | 8_2:+39285409 | Msa1247030:CDS |
| CCTTATGCAACGGTTCTTAG+AGG | 0.344392 | 8_2:+39287084 | Msa1247030:CDS |
| TGAGAAAAGATCATCTAATA+TGG | 0.344831 | 8_2:+39288201 | Msa1247030:CDS |
| CGTAGGTATAATTTAGTTGC+TGG | 0.352470 | 8_2:+39287040 | Msa1247030:CDS |
| GCATGAAAATTTATTATCAT+AGG | 0.355517 | 8_2:-39285021 | None:intergenic |
| TGTCTATGAAAACTTGATTT+GGG | 0.361387 | 8_2:+39283996 | Msa1247030:CDS |
| ACCCTATGGTCTTGCTGAAA+TGG | 0.370267 | 8_2:-39287112 | None:intergenic |
| TCACTAGAGGCTTGACTTGT+TGG | 0.371416 | 8_2:-39286832 | None:intergenic |
| TGGCCAAATTTGTCTTTCTT+GGG | 0.378131 | 8_2:+39286955 | Msa1247030:CDS |
| TCTAGCATTGAAAATATAAA+GGG | 0.379257 | 8_2:+39284771 | Msa1247030:CDS |
| TTTCAAGCCATGCATGCAAT+AGG | 0.382640 | 8_2:+39285638 | Msa1247030:CDS |
| AAGAAGAAGAAGAAATAAAA+GGG | 0.398870 | 8_2:+39284895 | Msa1247030:CDS |
| AGAAACAGAGTACTCTGTTC+TGG | 0.400740 | 8_2:+39284371 | Msa1247030:CDS |
| AAAGAAAAGCTTAAGATCAT+AGG | 0.401509 | 8_2:-39284729 | None:intergenic |
| TGAAAACTTGATTTGGGCAT+TGG | 0.401931 | 8_2:+39284002 | Msa1247030:CDS |
| TGAAGAAGAGTTGGATGAAA+TGG | 0.405660 | 8_2:+39285334 | Msa1247030:CDS |
| TCCACCATCAAGATGAAAAT+CGG | 0.412118 | 8_2:-39284847 | None:intergenic |
| TGGGGTGAAGAGCATGGAAT+TGG | 0.412478 | 8_2:+39287609 | Msa1247030:intron |
| CAATTATGTGGTTCATTCCA+TGG | 0.415048 | 8_2:+39284047 | Msa1247030:CDS |
| CATTAACAAGCTTCAACATT+GGG | 0.416766 | 8_2:-39286901 | None:intergenic |
| GAAGTGGAAATTGCATAGTA+AGG | 0.420510 | 8_2:+39288075 | Msa1247030:CDS |
| ATCTTCTCTTCAATACTCAA+TGG | 0.427669 | 8_2:-39285533 | None:intergenic |
| TAGTGATCCCTCAGAATTTG+TGG | 0.431182 | 8_2:+39286849 | Msa1247030:CDS |
| ATATGAAAATCTTCATAGCT+TGG | 0.439737 | 8_2:-39284327 | None:intergenic |
| GCTCTCACCTATTGCATGCA+TGG | 0.440275 | 8_2:-39285645 | None:intergenic |
| GTTGGATGAAATGGATTATG+AGG | 0.446923 | 8_2:+39285343 | Msa1247030:CDS |
| CAGTGAAGATCAAATTCAAC+TGG | 0.448901 | 8_2:+39288112 | Msa1247030:CDS |
| TGTTGACAAGAAGATTCAAT+TGG | 0.450331 | 8_2:+39288253 | Msa1247030:CDS |
| TCACATTGTTGAAATTCAAA+AGG | 0.455037 | 8_2:+39285568 | Msa1247030:CDS |
| TTGAGAGATTGATCATATAT+GGG | 0.461405 | 8_2:+39283907 | Msa1247030:exon |
| TTCCAAATTTCTTCCATCAA+AGG | 0.464306 | 8_2:-39283838 | None:intergenic |
| AACAATGTATGAAGAAGAGT+TGG | 0.470871 | 8_2:+39285325 | Msa1247030:CDS |
| AAGGTTAGAACAAATAATTA+AGG | 0.476290 | 8_2:+39287638 | Msa1247030:CDS |
| TCATTAACAAGCTTCAACAT+TGG | 0.480186 | 8_2:-39286902 | None:intergenic |
| AGCAGGTCTTCTTCAACTAA+AGG | 0.481722 | 8_2:+39286772 | Msa1247030:intron |
| ATTGAGTATTGAAGAGAAGA+TGG | 0.483088 | 8_2:+39285535 | Msa1247030:CDS |
| CATGGGAAATATAGAGAAGA+AGG | 0.485590 | 8_2:+39285043 | Msa1247030:CDS |
| CCTCTAAGAACCGTTGCATA+AGG | 0.486317 | 8_2:-39287084 | None:intergenic |
| TTCTAGCACAAGTAGGATTG+AGG | 0.488666 | 8_2:+39288147 | Msa1247030:CDS |
| TTCAAAACTATGTCAAGAAT+CGG | 0.489084 | 8_2:+39287134 | Msa1247030:CDS |
| TATAGAGAGTGAAGAAAGAG+AGG | 0.492005 | 8_2:+39284347 | Msa1247030:CDS |
| GCTTGTTAATGAACTGCATA+GGG | 0.496611 | 8_2:+39286913 | Msa1247030:CDS |
| AATTATGTGGTTCATTCCAT+GGG | 0.501176 | 8_2:+39284048 | Msa1247030:CDS |
| AATCAACAAGATGATGAGAA+AGG | 0.502995 | 8_2:+39284411 | Msa1247030:CDS |
| GTGGGAGAATGATGAGGTAA+TGG | 0.503171 | 8_2:+39285394 | Msa1247030:CDS |
| GATTTGGAAATTGTTTATGT+TGG | 0.507681 | 8_2:+39286935 | Msa1247030:CDS |
| AAACTTCCAAAACACTTGCA+TGG | 0.511519 | 8_2:-39287664 | None:intergenic |
| AGGATTGAGGTTGATTTCAA+AGG | 0.514457 | 8_2:+39288160 | Msa1247030:CDS |
| GAGCAGTTTCTAGCACAAGT+AGG | 0.516345 | 8_2:+39288140 | Msa1247030:CDS |
| CAAGATGATGAGAAAGGAAA+GGG | 0.525313 | 8_2:+39284417 | Msa1247030:CDS |
| ACATGTCAAAGAATCATCAT+TGG | 0.527186 | 8_2:-39285159 | None:intergenic |
| TGTTGAGCGCGAATACGAAA+AGG | 0.536522 | 8_2:+39285298 | Msa1247030:CDS |
| TTTCTTGGGAAATCCTATGT+TGG | 0.536573 | 8_2:+39286969 | Msa1247030:CDS |
| TTTGGGCATTGGCTTCTGCA+TGG | 0.537606 | 8_2:+39284013 | Msa1247030:CDS |
| ACCATTTCAGCAAGACCATA+GGG | 0.537698 | 8_2:+39287111 | Msa1247030:CDS |
| AAATTATACCTACGAGGTCG+TGG | 0.542437 | 8_2:-39287031 | None:intergenic |
| AAACTAAAGCTTAAGAACAT+AGG | 0.543009 | 8_2:-39284984 | None:intergenic |
| TAGAGGCTTGACTTGTTGGA+CGG | 0.547728 | 8_2:-39286828 | None:intergenic |
| GATTGATGAGTTCACTGAAG+AGG | 0.560035 | 8_2:+39284287 | Msa1247030:CDS |
| AGCATGGAATTGGTAGTGAA+AGG | 0.560693 | 8_2:+39287619 | Msa1247030:CDS |
| AACCATTTCAGCAAGACCAT+AGG | 0.564584 | 8_2:+39287110 | Msa1247030:CDS |
| TTGCGTGGCCACAAATTCTG+AGG | 0.565008 | 8_2:-39286857 | None:intergenic |
| AGCTTGTTAATGAACTGCAT+AGG | 0.568695 | 8_2:+39286912 | Msa1247030:CDS |
| ATATGAGTGTGAAAGTCTTG+AGG | 0.576939 | 8_2:+39285214 | Msa1247030:CDS |
| ACAAGATGATGAGAAAGGAA+AGG | 0.578719 | 8_2:+39284416 | Msa1247030:CDS |
| TGTGAGATTTCAGCATAACA+AGG | 0.599893 | 8_2:-39283939 | None:intergenic |
| CTCAAGGAAAGATTAAGAAG+TGG | 0.603788 | 8_2:+39288059 | Msa1247030:CDS |
| TGCGTGGCCACAAATTCTGA+GGG | 0.604567 | 8_2:-39286856 | None:intergenic |
| AACAGAGTACTCTGTTCTGG+TGG | 0.608387 | 8_2:+39284374 | Msa1247030:CDS |
| ATTTAGTTGAACAAAACAAG+AGG | 0.611356 | 8_2:+39284244 | Msa1247030:CDS |
| TGATGAGGATGAATTTGAGT+GGG | 0.611519 | 8_2:+39285376 | Msa1247030:CDS |
| ATAGAGAGTGAAGAAAGAGA+GGG | 0.612047 | 8_2:+39284348 | Msa1247030:CDS |
| GTAGAAGGAGAGAAAACTCA+AGG | 0.618624 | 8_2:+39288043 | Msa1247030:intron |
| GATTCAAATCTTGATCAAGA+TGG | 0.633810 | 8_2:+39284582 | Msa1247030:CDS |
| ATGATGAGGATGAATTTGAG+TGG | 0.634660 | 8_2:+39285375 | Msa1247030:CDS |
| CAAACCTGAATATGTATGTG+AGG | 0.635163 | 8_2:-39284077 | None:intergenic |
| GTATGTGAGGATCAACCCCA+TGG | 0.637617 | 8_2:-39284064 | None:intergenic |
| ATGATTCTCCACGACCTCGT+AGG | 0.642748 | 8_2:+39287023 | Msa1247030:CDS |
| TGAGGAAGATGAAGATGATG+AGG | 0.646536 | 8_2:+39285361 | Msa1247030:CDS |
| AAATTCTGAGGGATCACTAG+AGG | 0.650815 | 8_2:-39286845 | None:intergenic |
| GTGTGATAGAGAAGAAGACT+CGG | 0.687344 | 8_2:+39285268 | Msa1247030:CDS |
| GAAGCTGAATGTATTCAACA+AGG | 0.689518 | 8_2:-39288296 | None:intergenic |
| ATTATGTGGTTCATTCCATG+GGG | 0.697384 | 8_2:+39284049 | Msa1247030:CDS |
| ATTTGAGTGGGAGAATGATG+AGG | 0.727491 | 8_2:+39285388 | Msa1247030:CDS |
| GCAACTAAATTATACCTACG+AGG | 0.798622 | 8_2:-39287037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAATGAAAAATAAATAA+TGG | + | chr8_2:39284166-39284185 | Msa1247030:intron | 10.0% |
| !! | AAAAAAAAAGTCAAATAATT+TGG | - | chr8_2:39285670-39285689 | None:intergenic | 10.0% |
| !! | TAAATATGAATTATTTAGTT+AGG | - | chr8_2:39286366-39286385 | None:intergenic | 10.0% |
| !! | TATTATAATATTGAAGAAAA+TGG | - | chr8_2:39286529-39286548 | None:intergenic | 10.0% |
| !! | ATTATTTACTTTAAATGAAT+AGG | - | chr8_2:39286696-39286715 | None:intergenic | 10.0% |
| !!! | TTTTGCATTAAAAATAATTT+TGG | - | chr8_2:39286803-39286822 | None:intergenic | 10.0% |
| !!! | ATTTTTCATTATCTTTTTTC+TGG | - | chr8_2:39284160-39284179 | None:intergenic | 15.0% |
| !!! | GATATCTGAAATAAAAAATA+AGG | - | chr8_2:39284194-39284213 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTCAGATATCAA+AGG | + | chr8_2:39284196-39284215 | Msa1247030:intron | 15.0% |
| !! | ATTATTTAAAGATTAGAACA+CGG | + | chr8_2:39285926-39285945 | Msa1247030:intron | 15.0% |
| !! | ATAAAATCAATGGAAAATAT+TGG | - | chr8_2:39286260-39286279 | None:intergenic | 15.0% |
| !!! | TGAACAACAATTTAAAATTA+TGG | + | chr8_2:39287379-39287398 | Msa1247030:intron | 15.0% |
| !! | AATAATTTGAAAAGTTAAAG+TGG | - | chr8_2:39287499-39287518 | None:intergenic | 15.0% |
| !! | AATAAAAAACCTTATGTAAT+TGG | - | chr8_2:39287800-39287819 | None:intergenic | 15.0% |
| !! | TTCTTACAAACTTAATATTA+TGG | - | chr8_2:39287936-39287955 | None:intergenic | 15.0% |
| !! | AAAAAATGAATAATTTCGTA+GGG | - | chr8_2:39288005-39288024 | None:intergenic | 15.0% |
| !! | AAAAAAATGAATAATTTCGT+AGG | - | chr8_2:39288006-39288025 | None:intergenic | 15.0% |
| !!! | CTTTCTTTTTTATAAAGAGA+AGG | - | chr8_2:39283878-39283897 | None:intergenic | 20.0% |
| !!! | TTCTGGCTAATATTATTTAT+TGG | - | chr8_2:39284143-39284162 | None:intergenic | 20.0% |
| !! | AATAGTGAAGAAGAAAAAAA+AGG | + | chr8_2:39284477-39284496 | Msa1247030:CDS | 20.0% |
| !! | ATAGTGAAGAAGAAAAAAAA+GGG | + | chr8_2:39284478-39284497 | Msa1247030:CDS | 20.0% |
| !!! | TTCTAGCATTGAAAATATAA+AGG | + | chr8_2:39284770-39284789 | Msa1247030:CDS | 20.0% |
| !!! | TCTAGCATTGAAAATATAAA+GGG | + | chr8_2:39284771-39284790 | Msa1247030:CDS | 20.0% |
| !! | AAGAAGAAGAAGAAATAAAA+GGG | + | chr8_2:39284895-39284914 | Msa1247030:CDS | 20.0% |
| !! | GCATGAAAATTTATTATCAT+AGG | - | chr8_2:39285024-39285043 | None:intergenic | 20.0% |
| !!! | TGATAATAAATTTTCATGCA+TGG | + | chr8_2:39285025-39285044 | Msa1247030:CDS | 20.0% |
| !!! | GATAATAAATTTTCATGCAT+GGG | + | chr8_2:39285026-39285045 | Msa1247030:CDS | 20.0% |
| !! | TATGTTGAAATACTTGTATT+TGG | + | chr8_2:39285691-39285710 | Msa1247030:intron | 20.0% |
| !!! | TATTTGGTTCATATTGTATT+TGG | + | chr8_2:39285707-39285726 | Msa1247030:intron | 20.0% |
| !!! | TGATCATTTTATATGAAACA+CGG | + | chr8_2:39285744-39285763 | Msa1247030:intron | 20.0% |
| !! | TTTAGTATAATTATTCGTGT+CGG | - | chr8_2:39285821-39285840 | None:intergenic | 20.0% |
| !!! | TGATTTTCTCGAATTATTAA+CGG | + | chr8_2:39285846-39285865 | Msa1247030:intron | 20.0% |
| !!! | ATTTTTTTTCCTTTCACTTT+TGG | + | chr8_2:39286089-39286108 | Msa1247030:intron | 20.0% |
| !! | GTGATTAGAAAGAATATAAA+GGG | - | chr8_2:39286186-39286205 | None:intergenic | 20.0% |
| !! | TGTGATTAGAAAGAATATAA+AGG | - | chr8_2:39286187-39286206 | None:intergenic | 20.0% |
| !! | ACAATCTCAATATGTAAATT+TGG | - | chr8_2:39286473-39286492 | None:intergenic | 20.0% |
| !!! | AGTAACATTTCTTGTTTTTT+AGG | + | chr8_2:39286597-39286616 | Msa1247030:intron | 20.0% |
| !! | ATTTACTTTAAATGAATAGG+TGG | - | chr8_2:39286693-39286712 | None:intergenic | 20.0% |
| !! | ATTTAATTAGCTAATGACAA+AGG | - | chr8_2:39286734-39286753 | None:intergenic | 20.0% |
| !!! | GCATTAAAAATAATTTTGGA+GGG | - | chr8_2:39286799-39286818 | None:intergenic | 20.0% |
| !!! | TGCATTAAAAATAATTTTGG+AGG | - | chr8_2:39286800-39286819 | None:intergenic | 20.0% |
| !! | AAGATAAGAAGAAAATTAAG+TGG | + | chr8_2:39287589-39287608 | Msa1247030:intron | 20.0% |
| !! | AGATAAGAAGAAAATTAAGT+GGG | + | chr8_2:39287590-39287609 | Msa1247030:intron | 20.0% |
| !! | AAGGTTAGAACAAATAATTA+AGG | + | chr8_2:39287638-39287657 | Msa1247030:CDS | 20.0% |
| !! | TATTCAAATCCAATTACATA+AGG | + | chr8_2:39287788-39287807 | Msa1247030:intron | 20.0% |
| !!! | TAAAAACTCGTAATTTTGTA+TGG | - | chr8_2:39287873-39287892 | None:intergenic | 20.0% |
| ! | TTGAGAGATTGATCATATAT+GGG | + | chr8_2:39283907-39283926 | Msa1247030:exon | 25.0% |
| !! | TTTTCATAGACAAAATCACT+AGG | - | chr8_2:39283988-39284007 | None:intergenic | 25.0% |
| ! | TTGTCTATGAAAACTTGATT+TGG | + | chr8_2:39283995-39284014 | Msa1247030:CDS | 25.0% |
| ! | TGTCTATGAAAACTTGATTT+GGG | + | chr8_2:39283996-39284015 | Msa1247030:CDS | 25.0% |
| !! | GATTTTCTTATGCAATTATG+TGG | + | chr8_2:39284035-39284054 | Msa1247030:CDS | 25.0% |
| !! | TTTTGTTCAACTAAATCATG+TGG | - | chr8_2:39284240-39284259 | None:intergenic | 25.0% |
| ! | ATTTAGTTGAACAAAACAAG+AGG | + | chr8_2:39284244-39284263 | Msa1247030:CDS | 25.0% |
| ! | ATATGAAAATCTTCATAGCT+TGG | - | chr8_2:39284330-39284349 | None:intergenic | 25.0% |
| !! | AAATCACAAGTATCTTTTTC+TGG | - | chr8_2:39284699-39284718 | None:intergenic | 25.0% |
| ! | AGAAAAAGATACTTGTGATT+TGG | + | chr8_2:39284698-39284717 | Msa1247030:CDS | 25.0% |
| ! | AAAGAAAAGCTTAAGATCAT+AGG | - | chr8_2:39284732-39284751 | None:intergenic | 25.0% |
| ! | TGAAAATATAAAGGGTTCTT+TGG | + | chr8_2:39284779-39284798 | Msa1247030:CDS | 25.0% |
| ! | GAAGAAGAAGAAGAAATAAA+AGG | + | chr8_2:39284894-39284913 | Msa1247030:CDS | 25.0% |
| ! | TTACTTCAACACAAAGATAT+TGG | + | chr8_2:39284945-39284964 | Msa1247030:CDS | 25.0% |
| ! | AAACTAAAGCTTAAGAACAT+AGG | - | chr8_2:39284987-39285006 | None:intergenic | 25.0% |
| ! | TATCATAGGAAACATTTCTT+AGG | - | chr8_2:39285010-39285029 | None:intergenic | 25.0% |
| !! | ACTATTAGAGCATAATTTTG+AGG | + | chr8_2:39285067-39285086 | Msa1247030:CDS | 25.0% |
| ! | TCTTTGACATGTAAGATTAT+AGG | + | chr8_2:39285170-39285189 | Msa1247030:CDS | 25.0% |
| ! | TCACATTGTTGAAATTCAAA+AGG | + | chr8_2:39285568-39285587 | Msa1247030:CDS | 25.0% |
| ! | AATAATATGCTTATGAAGCA+TGG | - | chr8_2:39285912-39285931 | None:intergenic | 25.0% |
| ! | TGGATGGAAAATAAAATCAA+TGG | - | chr8_2:39286270-39286289 | None:intergenic | 25.0% |
| ! | TAAATTTGGACTCAATACAT+TGG | - | chr8_2:39286459-39286478 | None:intergenic | 25.0% |
| ! | GATTTGGAAATTGTTTATGT+TGG | + | chr8_2:39286935-39286954 | Msa1247030:CDS | 25.0% |
| ! | TTCAAAACTATGTCAAGAAT+CGG | + | chr8_2:39287134-39287153 | Msa1247030:CDS | 25.0% |
| !! | TTTGTTTCACCTTTTATGAT+TGG | - | chr8_2:39287187-39287206 | None:intergenic | 25.0% |
| ! | TTGTTACAACATCTAACTTA+GGG | - | chr8_2:39287252-39287271 | None:intergenic | 25.0% |
| ! | TTTGTTTGAACGCAATATAA+AGG | - | chr8_2:39287318-39287337 | None:intergenic | 25.0% |
| ! | GTAATATTGACGATTTAATG+AGG | - | chr8_2:39287342-39287361 | None:intergenic | 25.0% |
| ! | TATTATCTATGTCTATTCGT+CGG | + | chr8_2:39287515-39287534 | Msa1247030:intron | 25.0% |
| ! | GATAAGAAGAAAATTAAGTG+GGG | + | chr8_2:39287591-39287610 | Msa1247030:intron | 25.0% |
| !! | TGTGATGATGAAATACTTTA+TGG | - | chr8_2:39287722-39287741 | None:intergenic | 25.0% |
| !! | AAAAAAGTGTAAGTAGACAA+AGG | - | chr8_2:39287829-39287848 | None:intergenic | 25.0% |
| !!! | TCTACTTACACTTTTTTCAT+AGG | + | chr8_2:39287832-39287851 | Msa1247030:intron | 25.0% |
| ! | GAGACGAAAAATTCAAAATA+AGG | - | chr8_2:39287963-39287982 | None:intergenic | 25.0% |
| !!! | TTGGTTTTAAATGTTGTAGA+AGG | + | chr8_2:39288028-39288047 | Msa1247030:intron | 25.0% |
| ! | TGAGAAAAGATCATCTAATA+TGG | + | chr8_2:39288201-39288220 | Msa1247030:CDS | 25.0% |
| ! | TCTTGTCAACAAAATTGATT+TGG | - | chr8_2:39288244-39288263 | None:intergenic | 25.0% |
| !!! | TATAGATACACTTTTTTGAG+AGG | + | chr8_2:39288327-39288346 | Msa1247030:three_prime_UTR | 25.0% |
| AACCTTTGATGGAAGAAATT+TGG | + | chr8_2:39283836-39283855 | Msa1247030:five_prime_UTR | 30.0% | |
| TTCCAAATTTCTTCCATCAA+AGG | - | chr8_2:39283841-39283860 | None:intergenic | 30.0% | |
| CTTGAGAGATTGATCATATA+TGG | + | chr8_2:39283906-39283925 | Msa1247030:exon | 30.0% | |
| ! | TTTCAGCATAACAAGGTTTT+TGG | - | chr8_2:39283935-39283954 | None:intergenic | 30.0% |
| AATTATGTGGTTCATTCCAT+GGG | + | chr8_2:39284048-39284067 | Msa1247030:CDS | 30.0% | |
| AATCAACAAGATGATGAGAA+AGG | + | chr8_2:39284411-39284430 | Msa1247030:CDS | 30.0% | |
| !!! | AGAGTGCTCTGTTTTTATAA+AGG | + | chr8_2:39284557-39284576 | Msa1247030:CDS | 30.0% |
| !!! | GAGTGCTCTGTTTTTATAAA+GGG | + | chr8_2:39284558-39284577 | Msa1247030:CDS | 30.0% |
| GATTCAAATCTTGATCAAGA+TGG | + | chr8_2:39284582-39284601 | Msa1247030:CDS | 30.0% | |
| ! | TAGAAAGTGCATCATTTCTT+AGG | - | chr8_2:39284755-39284774 | None:intergenic | 30.0% |
| !! | ACACAAAGATATTGGTGTTT+TGG | + | chr8_2:39284953-39284972 | Msa1247030:CDS | 30.0% |
| ACATGTCAAAGAATCATCAT+TGG | - | chr8_2:39285162-39285181 | None:intergenic | 30.0% | |
| TGAGGAAGTTCAAGATTTAA+AGG | + | chr8_2:39285232-39285251 | Msa1247030:CDS | 30.0% | |
| AACAATGTATGAAGAAGAGT+TGG | + | chr8_2:39285325-39285344 | Msa1247030:CDS | 30.0% | |
| !! | GGTAATGGAACAAATCAAAT+TGG | + | chr8_2:39285409-39285428 | Msa1247030:CDS | 30.0% |
| GAATTGAAAAATGCAAGACA+AGG | + | chr8_2:39285431-39285450 | Msa1247030:CDS | 30.0% | |
| ATCTTCTCTTCAATACTCAA+TGG | - | chr8_2:39285536-39285555 | None:intergenic | 30.0% | |
| !! | ATTGAGTATTGAAGAGAAGA+TGG | + | chr8_2:39285535-39285554 | Msa1247030:CDS | 30.0% |
| GGATACTGCATGTTTATTTA+CGG | + | chr8_2:39286110-39286129 | Msa1247030:intron | 30.0% | |
| ! | AGAGTGGAATTGAAAAGTTT+TGG | - | chr8_2:39286236-39286255 | None:intergenic | 30.0% |
| GTCAAATGTATATATGCACA+AGG | - | chr8_2:39286300-39286319 | None:intergenic | 30.0% | |
| CATTAACAAGCTTCAACATT+GGG | - | chr8_2:39286904-39286923 | None:intergenic | 30.0% | |
| TCATTAACAAGCTTCAACAT+TGG | - | chr8_2:39286905-39286924 | None:intergenic | 30.0% | |
| TTTCCCAAGAAAGACAAATT+TGG | - | chr8_2:39286961-39286980 | None:intergenic | 30.0% | |
| !!! | TTTTTCAAGTCCTTATGCAA+CGG | + | chr8_2:39287074-39287093 | Msa1247030:CDS | 30.0% |
| ! | CTTCAAGTTCCAATCATAAA+AGG | + | chr8_2:39287175-39287194 | Msa1247030:CDS | 30.0% |
| GTTGTTACAACATCTAACTT+AGG | - | chr8_2:39287253-39287272 | None:intergenic | 30.0% | |
| CAGAAATTTCAGAACTTCTA+CGG | + | chr8_2:39287763-39287782 | Msa1247030:intron | 30.0% | |
| AGAAATTTCAGAACTTCTAC+GGG | + | chr8_2:39287764-39287783 | Msa1247030:intron | 30.0% | |
| ! | TTTGATCTTCACTGTGTTTT+TGG | - | chr8_2:39288106-39288125 | None:intergenic | 30.0% |
| TGTTGACAAGAAGATTCAAT+TGG | + | chr8_2:39288253-39288272 | Msa1247030:CDS | 30.0% | |
| TGTGAGATTTCAGCATAACA+AGG | - | chr8_2:39283942-39283961 | None:intergenic | 35.0% | |
| !! | TGAAAACTTGATTTGGGCAT+TGG | + | chr8_2:39284002-39284021 | Msa1247030:CDS | 35.0% |
| CAATTATGTGGTTCATTCCA+TGG | + | chr8_2:39284047-39284066 | Msa1247030:CDS | 35.0% | |
| ATTATGTGGTTCATTCCATG+GGG | + | chr8_2:39284049-39284068 | Msa1247030:CDS | 35.0% | |
| TGATCCTCACATACATATTC+AGG | + | chr8_2:39284073-39284092 | Msa1247030:CDS | 35.0% | |
| CAAACCTGAATATGTATGTG+AGG | - | chr8_2:39284080-39284099 | None:intergenic | 35.0% | |
| TATAGAGAGTGAAGAAAGAG+AGG | + | chr8_2:39284347-39284366 | Msa1247030:CDS | 35.0% | |
| ATAGAGAGTGAAGAAAGAGA+GGG | + | chr8_2:39284348-39284367 | Msa1247030:CDS | 35.0% | |
| ACAAGATGATGAGAAAGGAA+AGG | + | chr8_2:39284416-39284435 | Msa1247030:CDS | 35.0% | |
| CAAGATGATGAGAAAGGAAA+GGG | + | chr8_2:39284417-39284436 | Msa1247030:CDS | 35.0% | |
| !! | TGCAGTGTTTTGAATGAAGA+TGG | + | chr8_2:39284450-39284469 | Msa1247030:CDS | 35.0% |
| !! | AGAGTGCTCTGTTTTGTTAA+AGG | + | chr8_2:39284818-39284837 | Msa1247030:CDS | 35.0% |
| !! | GAGTGCTCTGTTTTGTTAAA+GGG | + | chr8_2:39284819-39284838 | Msa1247030:CDS | 35.0% |
| ! | GATTCCGATTTTCATCTTGA+TGG | + | chr8_2:39284843-39284862 | Msa1247030:CDS | 35.0% |
| TCCACCATCAAGATGAAAAT+CGG | - | chr8_2:39284850-39284869 | None:intergenic | 35.0% | |
| CATGGGAAATATAGAGAAGA+AGG | + | chr8_2:39285043-39285062 | Msa1247030:CDS | 35.0% | |
| ATATGAGTGTGAAAGTCTTG+AGG | + | chr8_2:39285214-39285233 | Msa1247030:CDS | 35.0% | |
| TGAAGAAGAGTTGGATGAAA+TGG | + | chr8_2:39285334-39285353 | Msa1247030:CDS | 35.0% | |
| !! | GTTGGATGAAATGGATTATG+AGG | + | chr8_2:39285343-39285362 | Msa1247030:CDS | 35.0% |
| ATGATGAGGATGAATTTGAG+TGG | + | chr8_2:39285375-39285394 | Msa1247030:CDS | 35.0% | |
| TGATGAGGATGAATTTGAGT+GGG | + | chr8_2:39285376-39285395 | Msa1247030:CDS | 35.0% | |
| TTGAAAAATGCAAGACAAGG+AGG | + | chr8_2:39285434-39285453 | Msa1247030:CDS | 35.0% | |
| !! | ACTTGCAACAATTTTGGAAG+AGG | + | chr8_2:39285457-39285476 | Msa1247030:CDS | 35.0% |
| ! | ATAATTATTCGTGTCGGTGT+CGG | - | chr8_2:39285815-39285834 | None:intergenic | 35.0% |
| ATGCAGTATCCAAAAGTGAA+AGG | - | chr8_2:39286101-39286120 | None:intergenic | 35.0% | |
| CTGCATGTTTATTTACGGTT+AGG | + | chr8_2:39286115-39286134 | Msa1247030:intron | 35.0% | |
| AATGGAAAATATTGGCAGAG+TGG | - | chr8_2:39286252-39286271 | None:intergenic | 35.0% | |
| TATATGCACAAGGTTGACAT+TGG | - | chr8_2:39286290-39286309 | None:intergenic | 35.0% | |
| ! | TTTTGATCAGCTACTGAAGA+TGG | - | chr8_2:39286328-39286347 | None:intergenic | 35.0% |
| AATACATTGGCACAAAGACA+CGG | - | chr8_2:39286446-39286465 | None:intergenic | 35.0% | |
| !!! | ACTTGTTTTACCTTTGAAGC+AGG | + | chr8_2:39286755-39286774 | Msa1247030:intron | 35.0% |
| !! | AGCTTGTTAATGAACTGCAT+AGG | + | chr8_2:39286912-39286931 | Msa1247030:CDS | 35.0% |
| ! | GCTTGTTAATGAACTGCATA+GGG | + | chr8_2:39286913-39286932 | Msa1247030:CDS | 35.0% |
| TAATGAACTGCATAGGGATT+TGG | + | chr8_2:39286919-39286938 | Msa1247030:CDS | 35.0% | |
| TTGGCCAAATTTGTCTTTCT+TGG | + | chr8_2:39286954-39286973 | Msa1247030:CDS | 35.0% | |
| TGGCCAAATTTGTCTTTCTT+GGG | + | chr8_2:39286955-39286974 | Msa1247030:CDS | 35.0% | |
| TTTCTTGGGAAATCCTATGT+TGG | + | chr8_2:39286969-39286988 | Msa1247030:CDS | 35.0% | |
| GCAACTAAATTATACCTACG+AGG | - | chr8_2:39287040-39287059 | None:intergenic | 35.0% | |
| CGTAGGTATAATTTAGTTGC+TGG | + | chr8_2:39287040-39287059 | Msa1247030:CDS | 35.0% | |
| !!! | TGACATAGTTTTGAACCCTA+TGG | - | chr8_2:39287129-39287148 | None:intergenic | 35.0% |
| TAAACTTTCCGACACAATTG+TGG | + | chr8_2:39287280-39287299 | Msa1247030:intron | 35.0% | |
| ATACTTGTGTTAGTGTCTCA+CGG | + | chr8_2:39287451-39287470 | Msa1247030:intron | 35.0% | |
| AAACTTCCAAAACACTTGCA+TGG | - | chr8_2:39287667-39287686 | None:intergenic | 35.0% | |
| TCATCATCACAAAGAGAATG+AGG | + | chr8_2:39287731-39287750 | Msa1247030:intron | 35.0% | |
| CTCAAGGAAAGATTAAGAAG+TGG | + | chr8_2:39288059-39288078 | Msa1247030:CDS | 35.0% | |
| GAAGTGGAAATTGCATAGTA+AGG | + | chr8_2:39288075-39288094 | Msa1247030:CDS | 35.0% | |
| CAGTGAAGATCAAATTCAAC+TGG | + | chr8_2:39288112-39288131 | Msa1247030:CDS | 35.0% | |
| ! | AGGATTGAGGTTGATTTCAA+AGG | + | chr8_2:39288160-39288179 | Msa1247030:CDS | 35.0% |
| GAAGCTGAATGTATTCAACA+AGG | - | chr8_2:39288299-39288318 | None:intergenic | 35.0% | |
| GATTGATGAGTTCACTGAAG+AGG | + | chr8_2:39284287-39284306 | Msa1247030:CDS | 40.0% | |
| ! | AGAAACAGAGTACTCTGTTC+TGG | + | chr8_2:39284371-39284390 | Msa1247030:CDS | 40.0% |
| ! | TCCGATTTTCATCTTGATGG+TGG | + | chr8_2:39284846-39284865 | Msa1247030:CDS | 40.0% |
| GTGTGATAGAGAAGAAGACT+CGG | + | chr8_2:39285268-39285287 | Msa1247030:CDS | 40.0% | |
| TGAGGAAGATGAAGATGATG+AGG | + | chr8_2:39285361-39285380 | Msa1247030:CDS | 40.0% | |
| ATTTGAGTGGGAGAATGATG+AGG | + | chr8_2:39285388-39285407 | Msa1247030:CDS | 40.0% | |
| ! | AGGAGGACTTGCAACAATTT+TGG | + | chr8_2:39285451-39285470 | Msa1247030:CDS | 40.0% |
| TTTCAAGCCATGCATGCAAT+AGG | + | chr8_2:39285638-39285657 | Msa1247030:CDS | 40.0% | |
| TACGACACATGTCTGACTAT+GGG | - | chr8_2:39285791-39285810 | None:intergenic | 40.0% | |
| ATACGACACATGTCTGACTA+TGG | - | chr8_2:39285792-39285811 | None:intergenic | 40.0% | |
| TATGAAGCATGGATACGTAC+CGG | - | chr8_2:39285901-39285920 | None:intergenic | 40.0% | |
| AATCACAAAGCCACTGTTAG+AGG | + | chr8_2:39286200-39286219 | Msa1247030:intron | 40.0% | |
| TTGAAGAAGACCTGCTTCAA+AGG | - | chr8_2:39286768-39286787 | None:intergenic | 40.0% | |
| AGCAGGTCTTCTTCAACTAA+AGG | + | chr8_2:39286772-39286791 | Msa1247030:intron | 40.0% | |
| ! | AAATTCTGAGGGATCACTAG+AGG | - | chr8_2:39286848-39286867 | None:intergenic | 40.0% |
| TAGTGATCCCTCAGAATTTG+TGG | + | chr8_2:39286849-39286868 | Msa1247030:CDS | 40.0% | |
| ! | TTTTCTCATGCTGCCAACAT+AGG | - | chr8_2:39286985-39287004 | None:intergenic | 40.0% |
| AAATTATACCTACGAGGTCG+TGG | - | chr8_2:39287034-39287053 | None:intergenic | 40.0% | |
| AACCATTTCAGCAAGACCAT+AGG | + | chr8_2:39287110-39287129 | Msa1247030:CDS | 40.0% | |
| ACCATTTCAGCAAGACCATA+GGG | + | chr8_2:39287111-39287130 | Msa1247030:CDS | 40.0% | |
| ! | GTGTCGGAAAGTTTAAAACG+AGG | - | chr8_2:39287275-39287294 | None:intergenic | 40.0% |
| CAATGCAACCACAATTGTGT+CGG | - | chr8_2:39287291-39287310 | None:intergenic | 40.0% | |
| CAATATTACAGCTGCCATTG+CGG | + | chr8_2:39287353-39287372 | Msa1247030:intron | 40.0% | |
| ! | ATTGTTGTTCACAACCGCAA+TGG | - | chr8_2:39287370-39287389 | None:intergenic | 40.0% |
| !! | AGCATGGAATTGGTAGTGAA+AGG | + | chr8_2:39287619-39287638 | Msa1247030:CDS | 40.0% |
| ! | AGGAATCCATGCAAGTGTTT+TGG | + | chr8_2:39287658-39287677 | Msa1247030:CDS | 40.0% |
| TCACAAAGAGAATGAGGTCA+AGG | + | chr8_2:39287737-39287756 | Msa1247030:intron | 40.0% | |
| GTAGAAGGAGAGAAAACTCA+AGG | + | chr8_2:39288043-39288062 | Msa1247030:intron | 40.0% | |
| TTCTAGCACAAGTAGGATTG+AGG | + | chr8_2:39288147-39288166 | Msa1247030:CDS | 40.0% | |
| ! | AACAGAGTACTCTGTTCTGG+TGG | + | chr8_2:39284374-39284393 | Msa1247030:CDS | 45.0% |
| TGTTGAGCGCGAATACGAAA+AGG | + | chr8_2:39285298-39285317 | Msa1247030:CDS | 45.0% | |
| GTGGGAGAATGATGAGGTAA+TGG | + | chr8_2:39285394-39285413 | Msa1247030:CDS | 45.0% | |
| TATGAAACACGGACACTCCT+CGG | + | chr8_2:39285755-39285774 | Msa1247030:intron | 45.0% | |
| CTATGGGACATTCTAATCCG+AGG | - | chr8_2:39285775-39285794 | None:intergenic | 45.0% | |
| CTGGACATGACACAGACATA+CGG | - | chr8_2:39285875-39285894 | None:intergenic | 45.0% | |
| TCTGTGTCATGTCCAGTATC+CGG | + | chr8_2:39285879-39285898 | Msa1247030:intron | 45.0% | |
| TGTAGACTTGCCTCTAACAG+TGG | - | chr8_2:39286213-39286232 | None:intergenic | 45.0% | |
| TGCACAAGGTTGACATTGGA+TGG | - | chr8_2:39286286-39286305 | None:intergenic | 45.0% | |
| !! | TAGAGGCTTGACTTGTTGGA+CGG | - | chr8_2:39286831-39286850 | None:intergenic | 45.0% |
| !! | TCACTAGAGGCTTGACTTGT+TGG | - | chr8_2:39286835-39286854 | None:intergenic | 45.0% |
| ! | GTGTTCTTTTGAGCTTTGCG+TGG | - | chr8_2:39286875-39286894 | None:intergenic | 45.0% |
| ! | CCTCTAAGAACCGTTGCATA+AGG | - | chr8_2:39287087-39287106 | None:intergenic | 45.0% |
| CCTTATGCAACGGTTCTTAG+AGG | + | chr8_2:39287084-39287103 | Msa1247030:CDS | 45.0% | |
| ! | ACCCTATGGTCTTGCTGAAA+TGG | - | chr8_2:39287115-39287134 | None:intergenic | 45.0% |
| ATTAAGTGGGGTGAAGAGCA+TGG | + | chr8_2:39287603-39287622 | Msa1247030:intron | 45.0% | |
| TAGGGACTAAACTTGACGAC+TGG | - | chr8_2:39287987-39288006 | None:intergenic | 45.0% | |
| !! | GAGCAGTTTCTAGCACAAGT+AGG | + | chr8_2:39288140-39288159 | Msa1247030:CDS | 45.0% |
| !!! | AAATTATTCATTTTTTTATT+TGG | + | chr8_2:39288009-39288028 | Msa1247030:intron | 5.0% |
| !! | TTTGGGCATTGGCTTCTGCA+TGG | + | chr8_2:39284013-39284032 | Msa1247030:CDS | 50.0% |
| GTATGTGAGGATCAACCCCA+TGG | - | chr8_2:39284067-39284086 | None:intergenic | 50.0% | |
| GCTCTCACCTATTGCATGCA+TGG | - | chr8_2:39285648-39285667 | None:intergenic | 50.0% | |
| CATGGATACGTACCGGATAC+TGG | - | chr8_2:39285894-39285913 | None:intergenic | 50.0% | |
| TGCGTGGCCACAAATTCTGA+GGG | - | chr8_2:39286859-39286878 | None:intergenic | 50.0% | |
| TTGCGTGGCCACAAATTCTG+AGG | - | chr8_2:39286860-39286879 | None:intergenic | 50.0% | |
| ATGATTCTCCACGACCTCGT+AGG | + | chr8_2:39287023-39287042 | Msa1247030:CDS | 50.0% | |
| ! | TGGGGTGAAGAGCATGGAAT+TGG | + | chr8_2:39287609-39287628 | Msa1247030:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 39283832 | 39288359 | 39283832 | ID=Msa1247030;Name=Msa1247030 |
| chr8_2 | mRNA | 39283832 | 39288359 | 39283832 | ID=Msa1247030-mRNA-1;Parent=Msa1247030;Name=Msa1247030-mRNA-1;_AED=0.05;_eAED=0.05;_QI=93|0.5|0.6|1|0.5|0.8|5|55|801 |
| chr8_2 | exon | 39283832 | 39284094 | 39283832 | ID=Msa1247030-mRNA-1:exon:12159;Parent=Msa1247030-mRNA-1 |
| chr8_2 | exon | 39284209 | 39285659 | 39284209 | ID=Msa1247030-mRNA-1:exon:12160;Parent=Msa1247030-mRNA-1 |
| chr8_2 | exon | 39286777 | 39287196 | 39286777 | ID=Msa1247030-mRNA-1:exon:12161;Parent=Msa1247030-mRNA-1 |
| chr8_2 | exon | 39287619 | 39287725 | 39287619 | ID=Msa1247030-mRNA-1:exon:12162;Parent=Msa1247030-mRNA-1 |
| chr8_2 | exon | 39288047 | 39288359 | 39288047 | ID=Msa1247030-mRNA-1:exon:12163;Parent=Msa1247030-mRNA-1 |
| chr8_2 | five_prime_UTR | 39283832 | 39283924 | 39283832 | ID=Msa1247030-mRNA-1:five_prime_utr;Parent=Msa1247030-mRNA-1 |
| chr8_2 | CDS | 39283925 | 39284094 | 39283925 | ID=Msa1247030-mRNA-1:cds;Parent=Msa1247030-mRNA-1 |
| chr8_2 | CDS | 39284209 | 39285659 | 39284209 | ID=Msa1247030-mRNA-1:cds;Parent=Msa1247030-mRNA-1 |
| chr8_2 | CDS | 39286777 | 39287196 | 39286777 | ID=Msa1247030-mRNA-1:cds;Parent=Msa1247030-mRNA-1 |
| chr8_2 | CDS | 39287619 | 39287725 | 39287619 | ID=Msa1247030-mRNA-1:cds;Parent=Msa1247030-mRNA-1 |
| chr8_2 | CDS | 39288047 | 39288304 | 39288047 | ID=Msa1247030-mRNA-1:cds;Parent=Msa1247030-mRNA-1 |
| chr8_2 | three_prime_UTR | 39288305 | 39288359 | 39288305 | ID=Msa1247030-mRNA-1:three_prime_utr;Parent=Msa1247030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
