Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197020 | XP_013445998.1 | 93.684 | 570 | 36 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1099 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197020 | sp|O80763|NRX1_ARATH | 62.304 | 573 | 204 | 4 | 6 | 570 | 10 | 578 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197020 | A0A072U2K5 | 93.684 | 570 | 36 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1099 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0393650 | Msa1197020 | 0.801662 | 8.100985e-49 | -8.615850e-47 |
| Msa1197020 | Msa1249940 | 0.849134 | 3.929634e-60 | -8.615850e-47 |
| Msa1197020 | Msa1327770 | 0.906493 | 1.399621e-80 | -8.615850e-47 |
| Msa0564510 | Msa1197020 | 0.806313 | 8.740404e-50 | -8.615850e-47 |
| Msa0961490 | Msa1197020 | 0.825662 | 4.148295e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197020 | MtrunA17_Chr8g0365761 | 93.684 | 570 | 36 | 0 | 1 | 570 | 1 | 570 | 0.0 | 1099 |
| Msa1197020 | MtrunA17_Chr8g0365791 | 85.744 | 484 | 69 | 0 | 1 | 484 | 1 | 484 | 0.0 | 855 |
| Msa1197020 | MtrunA17_Chr8g0365791 | 35.928 | 334 | 211 | 3 | 9 | 340 | 169 | 501 | 3.60e-63 | 216 |
| Msa1197020 | MtrunA17_Chr8g0365791 | 33.702 | 181 | 117 | 2 | 328 | 507 | 8 | 186 | 6.57e-33 | 132 |
| Msa1197020 | MtrunA17_Chr3g0139141 | 38.082 | 365 | 225 | 1 | 175 | 539 | 19 | 382 | 4.48e-94 | 293 |
| Msa1197020 | MtrunA17_Chr3g0139141 | 35.780 | 327 | 205 | 5 | 11 | 335 | 15 | 338 | 1.03e-63 | 214 |
| Msa1197020 | MtrunA17_Chr3g0143311 | 40.256 | 390 | 215 | 6 | 175 | 546 | 40 | 429 | 7.81e-94 | 293 |
| Msa1197020 | MtrunA17_Chr3g0143311 | 42.722 | 316 | 166 | 4 | 15 | 315 | 40 | 355 | 1.40e-81 | 262 |
| Msa1197020 | MtrunA17_Chr3g0143311 | 46.452 | 155 | 70 | 4 | 14 | 156 | 203 | 356 | 3.36e-35 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1197020 | AT1G60420.1 | 62.304 | 573 | 204 | 4 | 6 | 570 | 10 | 578 | 0.0 | 748 |
| Msa1197020 | AT4G31240.1 | 37.940 | 369 | 228 | 1 | 172 | 540 | 17 | 384 | 2.87e-91 | 286 |
| Msa1197020 | AT4G31240.1 | 34.810 | 316 | 202 | 4 | 11 | 324 | 16 | 329 | 1.54e-64 | 216 |
| Msa1197020 | AT4G31240.2 | 37.940 | 369 | 228 | 1 | 172 | 540 | 17 | 384 | 2.87e-91 | 286 |
| Msa1197020 | AT4G31240.2 | 34.810 | 316 | 202 | 4 | 11 | 324 | 16 | 329 | 1.54e-64 | 216 |
Find 156 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAGGTCTGGTTGGGCTTTA+TGG | 0.070923 | 8_1:-47128776 | Msa1197020:CDS |
| CTCCCTACCTTGGTTGTTAT+TGG | 0.120806 | 8_1:-47129446 | Msa1197020:CDS |
| CCTTTGCAATGTCATCCTTT+TGG | 0.167653 | 8_1:+47128705 | None:intergenic |
| GAAATCTGCTTGTTATATTT+TGG | 0.175571 | 8_1:-47128439 | Msa1197020:three_prime_UTR |
| GTTAACATTATCCGTGTTTA+TGG | 0.188673 | 8_1:-47129977 | Msa1197020:CDS |
| TGACTCTTCTTCATTATCTA+AGG | 0.210482 | 8_1:+47129562 | None:intergenic |
| TCCCGCAAAGAATTCATTAA+AGG | 0.224770 | 8_1:+47128925 | None:intergenic |
| TCCCTACCTTGGTTGTTATT+GGG | 0.250054 | 8_1:-47129445 | Msa1197020:CDS |
| ATCACAAACCCATCCATCTT+TGG | 0.250320 | 8_1:+47128484 | None:intergenic |
| GAGGTCTGGTTGGGCTTTAT+GGG | 0.250764 | 8_1:-47128775 | Msa1197020:CDS |
| AAATATAACAAGCAGATTTC+AGG | 0.255684 | 8_1:+47128442 | None:intergenic |
| ATCCCCAAGCTCGTGGCAAT+TGG | 0.257472 | 8_1:-47128830 | Msa1197020:CDS |
| GGCCCAATTGCCACGAGCTT+GGG | 0.272891 | 8_1:+47128827 | None:intergenic |
| AAAAGCCTCATCATCTTTAT+CGG | 0.320709 | 8_1:+47130147 | None:intergenic |
| AACAAGGACGTCTTATTTAT+AGG | 0.322060 | 8_1:+47131041 | None:intergenic |
| ACAGAATCCGCCATTGTTCC+TGG | 0.331487 | 8_1:+47130971 | None:intergenic |
| TTGTCTCCCAGCGCACAATT+TGG | 0.341919 | 8_1:+47128542 | None:intergenic |
| TGGTATGCCTCAATGAGTTT+TGG | 0.350245 | 8_1:+47129016 | None:intergenic |
| TTTGGGCTTCTCTTCTTCCT+TGG | 0.354126 | 8_1:+47128502 | None:intergenic |
| TCAAACACTTGAGTCAGTTT+TGG | 0.355313 | 8_1:-47129297 | Msa1197020:CDS |
| AGTAGCAAATTCAAGGTATC+TGG | 0.356508 | 8_1:-47128854 | Msa1197020:CDS |
| ACTATTTAATCAAAAGCTTA+AGG | 0.365290 | 8_1:-47129639 | Msa1197020:CDS |
| AACAAGCAGATTTCAGGCTT+TGG | 0.367079 | 8_1:+47128448 | None:intergenic |
| TGGCCCAATTGCCACGAGCT+TGG | 0.380921 | 8_1:+47128826 | None:intergenic |
| CCATGGCTGGCACTTCCCTT+TGG | 0.383022 | 8_1:-47128899 | Msa1197020:CDS |
| CCAGTCCTTGAGATCGATAT+TGG | 0.384668 | 8_1:-47129882 | Msa1197020:CDS |
| GATTCCGGTGTCAGAGTTAG+AGG | 0.388856 | 8_1:-47129098 | Msa1197020:CDS |
| CTCTCCAAACGGTGACTTTG+AGG | 0.395188 | 8_1:-47130185 | Msa1197020:CDS |
| TGAGGCATACCATAAGATTA+AGG | 0.395339 | 8_1:-47129005 | Msa1197020:CDS |
| TCCTTTAATGAATTCTTTGC+GGG | 0.398362 | 8_1:-47128926 | Msa1197020:CDS |
| TCACAAACCCATCCATCTTT+GGG | 0.399851 | 8_1:+47128485 | None:intergenic |
| GTGAGGATGAGGGAGATAAT+TGG | 0.409851 | 8_1:-47128601 | Msa1197020:CDS |
| GATGAACTGTTTCATGTAAA+CGG | 0.411174 | 8_1:-47130055 | Msa1197020:CDS |
| CTTGCATTGCTTGATGAAGC+TGG | 0.412538 | 8_1:-47130022 | Msa1197020:CDS |
| TCAATGGCCTCAGCGGCATT+AGG | 0.415477 | 8_1:+47129401 | None:intergenic |
| TCTTCGCAACACCGGCGATC+AGG | 0.422776 | 8_1:-47130891 | Msa1197020:intron |
| ATTCTTGAGTAGCAAATTCA+AGG | 0.426880 | 8_1:-47128861 | Msa1197020:CDS |
| GTTTCATGCGTCACCTTCTC+AGG | 0.435152 | 8_1:+47128677 | None:intergenic |
| AATCTTGTGCATGAGTCGTC+TGG | 0.435460 | 8_1:-47128297 | Msa1197020:three_prime_UTR |
| GGAAAAGTTATTACTGAAGA+TGG | 0.435795 | 8_1:-47130001 | Msa1197020:CDS |
| ATCCTTTAATGAATTCTTTG+CGG | 0.438767 | 8_1:-47128927 | Msa1197020:CDS |
| GCTGAGGCCATTGAGGATCA+TGG | 0.439830 | 8_1:-47129392 | Msa1197020:CDS |
| GAGCTTCTTTCGTGACAGTC+TGG | 0.442158 | 8_1:+47128798 | None:intergenic |
| CGAAGAAGAAAGTCTCTATC+AGG | 0.446671 | 8_1:+47130908 | None:intergenic |
| TCCCCAAGCTCGTGGCAATT+GGG | 0.449928 | 8_1:-47128829 | Msa1197020:CDS |
| ATAAATAAGACGTCCTTGTT+CGG | 0.453613 | 8_1:-47131038 | Msa1197020:five_prime_UTR |
| AGCTTGAAGGGAAAGAAACT+TGG | 0.454943 | 8_1:-47130283 | Msa1197020:CDS |
| TCCTCTACTTCTCAGCCCAC+TGG | 0.456326 | 8_1:-47129063 | Msa1197020:CDS |
| TTCGTGACAGTCTGGCCACT+TGG | 0.457604 | 8_1:+47128806 | None:intergenic |
| CTGAGGCCATTGAGGATCAT+GGG | 0.457780 | 8_1:-47129391 | Msa1197020:CDS |
| TTTCCCTCAAGCTCAGAGAT+AGG | 0.462545 | 8_1:+47129707 | None:intergenic |
| CACGAAAGAAGCTCGAGGTC+TGG | 0.464365 | 8_1:-47128789 | Msa1197020:CDS |
| CTCCATCCAAATTGTGCGCT+GGG | 0.466966 | 8_1:-47128548 | Msa1197020:CDS |
| TTGGTTATCCTTGCCTCTCA+AGG | 0.468978 | 8_1:-47129513 | Msa1197020:CDS |
| GCTATCAGTTCTCCCTACCT+TGG | 0.470710 | 8_1:-47129456 | Msa1197020:CDS |
| CTTTGCGGGAATGCCATGGC+TGG | 0.471268 | 8_1:-47128912 | Msa1197020:CDS |
| GTTAAAATTGATAGCTTGAA+GGG | 0.473772 | 8_1:-47130295 | Msa1197020:CDS |
| AAGAAGCTCGAGGTCTGGTT+GGG | 0.474272 | 8_1:-47128784 | Msa1197020:CDS |
| TTGGAAGAAAAGCACGGCAT+GGG | 0.477928 | 8_1:+47129035 | None:intergenic |
| AAGTGTTTGAGATGCCTCCT+TGG | 0.478467 | 8_1:+47129310 | None:intergenic |
| ACAACCTCAAAGTCACCGTT+TGG | 0.479366 | 8_1:+47130181 | None:intergenic |
| AAAAGAAATAGAGGCCCAAA+AGG | 0.482783 | 8_1:-47128720 | Msa1197020:CDS |
| TTTATTCTCTCTTCAGTGAA+AGG | 0.486902 | 8_1:+47128740 | None:intergenic |
| AGAGAGAATAAAAGAAATAG+AGG | 0.489082 | 8_1:-47128729 | Msa1197020:CDS |
| GAGCTTGAGGGAAAGACAGT+TGG | 0.489851 | 8_1:-47129698 | Msa1197020:CDS |
| TTGGTTGTTATTGGGCCAGA+TGG | 0.490790 | 8_1:-47129437 | Msa1197020:CDS |
| CGCAATGTTTATTGCTGCGA+TGG | 0.491842 | 8_1:-47128626 | Msa1197020:CDS |
| GGTTAAAATTGATAGCTTGA+AGG | 0.491854 | 8_1:-47130296 | Msa1197020:CDS |
| TGAACCCTTTCTGATGTGAA+AGG | 0.494644 | 8_1:+47129941 | None:intergenic |
| CTAGCTTACTTCATTTCCAT+CGG | 0.501319 | 8_1:+47129829 | None:intergenic |
| AAAGAAGCTCGAGGTCTGGT+TGG | 0.502824 | 8_1:-47128785 | Msa1197020:CDS |
| GACTTTCTTCTTCGCAACAC+CGG | 0.503020 | 8_1:-47130899 | Msa1197020:CDS |
| AAACAATGATGCACTTGAAG+TGG | 0.503738 | 8_1:-47128978 | Msa1197020:CDS |
| GATAGCCAGCCATGGCATCT+TGG | 0.503945 | 8_1:+47130111 | None:intergenic |
| GAACCCTTTCTGATGTGAAA+GGG | 0.508847 | 8_1:+47129942 | None:intergenic |
| CTCCCAGCGCACAATTTGGA+TGG | 0.511436 | 8_1:+47128546 | None:intergenic |
| CATTGACAAAGATGCTAAGA+AGG | 0.512177 | 8_1:-47129252 | Msa1197020:intron |
| ATACCTATCTCTGAGCTTGA+GGG | 0.516850 | 8_1:-47129710 | Msa1197020:CDS |
| TCTTTAGTCACTCACTCTCC+AGG | 0.517949 | 8_1:-47130989 | Msa1197020:five_prime_UTR |
| CTGCGATGGTTGTGAGGATG+AGG | 0.519245 | 8_1:-47128612 | Msa1197020:CDS |
| CAAAAGGATGACATTGCAAA+GGG | 0.524480 | 8_1:-47128704 | Msa1197020:CDS |
| GATACCTATCTCTGAGCTTG+AGG | 0.524940 | 8_1:-47129711 | Msa1197020:CDS |
| TCTCCATCCAAATTGTGCGC+TGG | 0.526783 | 8_1:-47128549 | Msa1197020:CDS |
| GAAGAAGAGAAGCCCAAAGA+TGG | 0.528620 | 8_1:-47128497 | Msa1197020:CDS |
| CATACCCTTTCACATCAGAA+AGG | 0.529163 | 8_1:-47129946 | Msa1197020:CDS |
| ACCAGTGGGCTGAGAAGTAG+AGG | 0.529711 | 8_1:+47129062 | None:intergenic |
| GACTCTTCTTCATTATCTAA+GGG | 0.532377 | 8_1:+47129563 | None:intergenic |
| AAGAATTAGAAAGTGTGCCT+TGG | 0.535581 | 8_1:-47129532 | Msa1197020:CDS |
| GGAGACAAAGGAAGCATACA+TGG | 0.539176 | 8_1:-47128527 | Msa1197020:CDS |
| TGCAAAGGGGTGGCCTGAGA+AGG | 0.540645 | 8_1:-47128690 | Msa1197020:CDS |
| ATCAAGAAGAGGAAGCTAAG+AGG | 0.542413 | 8_1:-47129907 | Msa1197020:CDS |
| ATACCCTTTCACATCAGAAA+GGG | 0.545743 | 8_1:-47129945 | Msa1197020:CDS |
| GCCCAATTGCCACGAGCTTG+GGG | 0.546174 | 8_1:+47128828 | None:intergenic |
| AAGAGAAGCCCAAAGATGGA+TGG | 0.550982 | 8_1:-47128493 | Msa1197020:CDS |
| TGGTTGTTATTGGGCCAGAT+GGG | 0.552045 | 8_1:-47129436 | Msa1197020:CDS |
| AGAGTTGAAAGATCAAGAAG+AGG | 0.554619 | 8_1:-47129918 | Msa1197020:CDS |
| ATCAACCCCATGATCCTCAA+TGG | 0.561806 | 8_1:+47129385 | None:intergenic |
| GGACGTCTTATTTATAGGAG+TGG | 0.562679 | 8_1:+47131046 | None:intergenic |
| GTATTGAATTAGTTTCGCAC+AGG | 0.568373 | 8_1:+47129484 | None:intergenic |
| TTCCCCTCTAACTCTGACAC+CGG | 0.568510 | 8_1:+47129094 | None:intergenic |
| AGGTCTGGTTGGGCTTTATG+GGG | 0.570437 | 8_1:-47128774 | Msa1197020:CDS |
| TAATGCCGCTGAGGCCATTG+AGG | 0.572119 | 8_1:-47129399 | Msa1197020:CDS |
| TCATGGTGTGGTCCGTGTCG+AGG | 0.572429 | 8_1:-47130244 | Msa1197020:CDS |
| GGCCCAATAACAACCAAGGT+AGG | 0.575985 | 8_1:+47129443 | None:intergenic |
| TTACATGAAACAGTTCATCA+AGG | 0.576778 | 8_1:+47130059 | None:intergenic |
| AGAGAAGCCCAAAGATGGAT+GGG | 0.577163 | 8_1:-47128492 | Msa1197020:CDS |
| AATTGTGCGCTGGGAGACAA+AGG | 0.578428 | 8_1:-47128539 | Msa1197020:CDS |
| TTTGGAAGAAAAGCACGGCA+TGG | 0.578921 | 8_1:+47129034 | None:intergenic |
| TGGAAGAAAAGCACGGCATG+GGG | 0.579522 | 8_1:+47129036 | None:intergenic |
| ATTCACTCCAACGTTGGTGG+AGG | 0.582019 | 8_1:-47130221 | Msa1197020:CDS |
| TACGACGAACTCTCTCCAAA+CGG | 0.582755 | 8_1:-47130196 | Msa1197020:CDS |
| CCAATATCGATCTCAAGGAC+TGG | 0.584633 | 8_1:+47129882 | None:intergenic |
| CCAAAAGGATGACATTGCAA+AGG | 0.586191 | 8_1:-47128705 | Msa1197020:CDS |
| CTCGTGGCAATTGGGCCAAG+TGG | 0.588439 | 8_1:-47128821 | Msa1197020:CDS |
| GAACACAGACTAGCCGAACA+AGG | 0.590337 | 8_1:+47131025 | None:intergenic |
| GCCCAATAACAACCAAGGTA+GGG | 0.594443 | 8_1:+47129444 | None:intergenic |
| TCGAGGATTCACTCCAACGT+TGG | 0.595933 | 8_1:-47130227 | Msa1197020:CDS |
| CGATGAAATAGCAAAGGCCA+AGG | 0.596494 | 8_1:-47129327 | Msa1197020:CDS |
| AGAGGCCAATATCGATCTCA+AGG | 0.596517 | 8_1:+47129877 | None:intergenic |
| CACAAAGTCACGGGAACGAG+AGG | 0.599551 | 8_1:+47129859 | None:intergenic |
| GACTTTGTGATATCATCCGA+TGG | 0.599839 | 8_1:-47129845 | Msa1197020:CDS |
| ATTCCGGTGTCAGAGTTAGA+GGG | 0.603592 | 8_1:-47129097 | Msa1197020:CDS |
| CACTCACTCTCCAGGAACAA+TGG | 0.603918 | 8_1:-47130981 | Msa1197020:exon |
| AGGATTCACTCCAACGTTGG+TGG | 0.604343 | 8_1:-47130224 | Msa1197020:CDS |
| ATTTAATCAAAAGCTTAAGG+AGG | 0.604615 | 8_1:-47129636 | Msa1197020:CDS |
| AAAGATGGATGGGTTTGTGA+TGG | 0.605439 | 8_1:-47128482 | Msa1197020:CDS |
| AGGAAGCATACATGGTGCCA+AGG | 0.607046 | 8_1:-47128519 | Msa1197020:CDS |
| GGATGATATCACAAAGTCAC+GGG | 0.610022 | 8_1:+47129850 | None:intergenic |
| CGGATGATATCACAAAGTCA+CGG | 0.612088 | 8_1:+47129849 | None:intergenic |
| ATGCTTCAGCGCCATAAACA+CGG | 0.614436 | 8_1:+47129966 | None:intergenic |
| CTCAGCCGATAAAGATGATG+AGG | 0.619000 | 8_1:-47130152 | Msa1197020:CDS |
| TCATCAAGCAATGCAAGATG+AGG | 0.620375 | 8_1:+47130028 | None:intergenic |
| CCAAAGGGAAGTGCCAGCCA+TGG | 0.621888 | 8_1:+47128899 | None:intergenic |
| ATGATCCTCAATGGCCTCAG+CGG | 0.626422 | 8_1:+47129394 | None:intergenic |
| AATTCTTTGCGGGAATGCCA+TGG | 0.628513 | 8_1:-47128916 | Msa1197020:CDS |
| CAGTTGTAGTACCTGATCGC+CGG | 0.631584 | 8_1:+47130880 | None:intergenic |
| AGGATGACATTGCAAAGGGG+TGG | 0.634262 | 8_1:-47128700 | Msa1197020:CDS |
| ATCTGGCATCCCCAAGCTCG+TGG | 0.647534 | 8_1:-47128837 | Msa1197020:CDS |
| TGAACTCGATGAAATAGCAA+AGG | 0.647912 | 8_1:-47129333 | Msa1197020:CDS |
| TTCCGGTGTCAGAGTTAGAG+GGG | 0.651542 | 8_1:-47129096 | Msa1197020:CDS |
| AGTGGGCTGAGAAGTAGAGG+AGG | 0.655615 | 8_1:+47129065 | None:intergenic |
| ATCTGGCCCAATAACAACCA+AGG | 0.657451 | 8_1:+47129439 | None:intergenic |
| TGAGGCCATTGAGGATCATG+GGG | 0.663531 | 8_1:-47129390 | Msa1197020:CDS |
| TTATTGCTGCGATGGTTGTG+AGG | 0.670136 | 8_1:-47128618 | Msa1197020:CDS |
| ATTTATAGGAGTGGAAAGCG+TGG | 0.675779 | 8_1:+47131055 | None:intergenic |
| TCTACATCCTAATGCCGCTG+AGG | 0.677477 | 8_1:-47129408 | Msa1197020:CDS |
| TCACTCTCCAGGAACAATGG+CGG | 0.684799 | 8_1:-47130978 | Msa1197020:exon |
| TGAAATAGCAAAGGCCAAGG+AGG | 0.686521 | 8_1:-47129324 | Msa1197020:CDS |
| TGCGATGGTTGTGAGGATGA+GGG | 0.687770 | 8_1:-47128611 | Msa1197020:CDS |
| ACTGTCACGAAAGAAGCTCG+AGG | 0.699376 | 8_1:-47128794 | Msa1197020:CDS |
| TATAGGAGTGGAAAGCGTGG+AGG | 0.701516 | 8_1:+47131058 | None:intergenic |
| TTGAGAGGCAAGGATAACCA+AGG | 0.706344 | 8_1:+47129515 | None:intergenic |
| GGAAGAAAAGCACGGCATGG+GGG | 0.711566 | 8_1:+47129037 | None:intergenic |
| TCGTAGACCTCCACCAACGT+TGG | 0.713590 | 8_1:+47130214 | None:intergenic |
| AAAAGGATGACATTGCAAAG+GGG | 0.737416 | 8_1:-47128703 | Msa1197020:CDS |
| GTTGGAGTGAATCCTCGACA+CGG | 0.764812 | 8_1:+47130232 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAACAAATTAAAAAGA+GGG | + | chr8_1:47130193-47130212 | None:intergenic | 10.0% |
| !! | ATTAATAACAAATTAAAAAG+AGG | + | chr8_1:47130194-47130213 | None:intergenic | 10.0% |
| !!! | AAACAAAACTATACAATTTT+TGG | - | chr8_1:47128634-47128653 | Msa1197020:CDS | 15.0% |
| !! | AATCTTTATATATTGTGATA+TGG | - | chr8_1:47131019-47131038 | Msa1197020:five_prime_UTR | 15.0% |
| !! | TTCATAAAACACAACAAAAA+AGG | + | chr8_1:47128543-47128562 | None:intergenic | 20.0% |
| !!! | ATTCTCTCTTTTTTATGAAT+CGG | - | chr8_1:47128670-47128689 | Msa1197020:CDS | 20.0% |
| !! | ACTATTTAATCAAAAGCTTA+AGG | - | chr8_1:47129724-47129743 | Msa1197020:intron | 20.0% |
| !! | ATCTTACAACATAAATTTAC+TGG | - | chr8_1:47130140-47130159 | Msa1197020:CDS | 20.0% |
| !!! | AGGAGAATAACAATAATTTT+TGG | + | chr8_1:47131092-47131111 | None:intergenic | 20.0% |
| !!! | TCTCATATTTTGAAATTCAC+AGG | - | chr8_1:47129046-47129065 | Msa1197020:CDS | 25.0% |
| !! | GTTAAAATTGATAGCTTGAA+GGG | - | chr8_1:47129068-47129087 | Msa1197020:CDS | 25.0% |
| ! | TTAACTCAGTATGATATAGT+AGG | - | chr8_1:47129561-47129580 | Msa1197020:CDS | 25.0% |
| ! | AACAACCAGATAATAACAAA+AGG | + | chr8_1:47129589-47129608 | None:intergenic | 25.0% |
| !!! | TTTGTTATTATCTGGTTGTT+TGG | - | chr8_1:47129589-47129608 | Msa1197020:CDS | 25.0% |
| !!! | TTTTGATTAAATAGTGTGCA+TGG | + | chr8_1:47129719-47129738 | None:intergenic | 25.0% |
| ! | ATTTAATCAAAAGCTTAAGG+AGG | - | chr8_1:47129727-47129746 | Msa1197020:intron | 25.0% |
| ! | AATTAAAAAGAGGGAATGAT+GGG | + | chr8_1:47130184-47130203 | None:intergenic | 25.0% |
| ! | AAATTAAAAAGAGGGAATGA+TGG | + | chr8_1:47130185-47130204 | None:intergenic | 25.0% |
| ! | ATCCTTTAATGAATTCTTTG+CGG | - | chr8_1:47130436-47130455 | Msa1197020:intron | 25.0% |
| ! | AGAGAGAATAAAAGAAATAG+AGG | - | chr8_1:47130634-47130653 | Msa1197020:intron | 25.0% |
| ! | AAATATAACAAGCAGATTTC+AGG | + | chr8_1:47130924-47130943 | None:intergenic | 25.0% |
| !!! | GAAATCTGCTTGTTATATTT+TGG | - | chr8_1:47130924-47130943 | Msa1197020:CDS | 25.0% |
| !!! | TGTTATATTTTGGTGATTAC+TGG | - | chr8_1:47130934-47130953 | Msa1197020:CDS | 25.0% |
| !! | AACAAGGACGTCTTATTTAT+AGG | + | chr8_1:47128325-47128344 | None:intergenic | 30.0% |
| ATAAATAAGACGTCCTTGTT+CGG | - | chr8_1:47128325-47128344 | Msa1197020:intron | 30.0% | |
| AAAAAGGAGAAGAGAAGTAA+CGG | + | chr8_1:47128527-47128546 | None:intergenic | 30.0% | |
| TAAAACTACCACTTCAGTTT+GGG | + | chr8_1:47128989-47129008 | None:intergenic | 30.0% | |
| ATAAAACTACCACTTCAGTT+TGG | + | chr8_1:47128990-47129009 | None:intergenic | 30.0% | |
| TTTATTTGTACTTGTACCGA+TGG | - | chr8_1:47129005-47129024 | Msa1197020:CDS | 30.0% | |
| ! | GGTTAAAATTGATAGCTTGA+AGG | - | chr8_1:47129067-47129086 | Msa1197020:CDS | 30.0% |
| !! | GTTTCTATTTTTCAGCATCA+TGG | - | chr8_1:47129102-47129121 | Msa1197020:intron | 30.0% |
| AAAAGCCTCATCATCTTTAT+CGG | + | chr8_1:47129219-47129238 | None:intergenic | 30.0% | |
| GTGTCTCTGAATCAAAAAAT+GGG | + | chr8_1:47129277-47129296 | None:intergenic | 30.0% | |
| TTACATGAAACAGTTCATCA+AGG | + | chr8_1:47129307-47129326 | None:intergenic | 30.0% | |
| GATGAACTGTTTCATGTAAA+CGG | - | chr8_1:47129308-47129327 | Msa1197020:CDS | 30.0% | |
| GGAAAAGTTATTACTGAAGA+TGG | - | chr8_1:47129362-47129381 | Msa1197020:CDS | 30.0% | |
| GTTAACATTATCCGTGTTTA+TGG | - | chr8_1:47129386-47129405 | Msa1197020:CDS | 30.0% | |
| !!! | AGGTTCCTTTTGTTATTATC+TGG | - | chr8_1:47129581-47129600 | Msa1197020:CDS | 30.0% |
| TACAAAAAGCTGAAGGAAAA+TGG | - | chr8_1:47129752-47129771 | Msa1197020:intron | 30.0% | |
| ACAAAAAGCTGAAGGAAAAT+GGG | - | chr8_1:47129753-47129772 | Msa1197020:intron | 30.0% | |
| GACTCTTCTTCATTATCTAA+GGG | + | chr8_1:47129803-47129822 | None:intergenic | 30.0% | |
| TGACTCTTCTTCATTATCTA+AGG | + | chr8_1:47129804-47129823 | None:intergenic | 30.0% | |
| ATTAAAAAGAGGGAATGATG+GGG | + | chr8_1:47130183-47130202 | None:intergenic | 30.0% | |
| TTTATCTCCATTTCAGATTC+CGG | - | chr8_1:47130250-47130269 | Msa1197020:CDS | 30.0% | |
| ! | TTTTCTTCCAAAACTCATTG+AGG | - | chr8_1:47130340-47130359 | Msa1197020:intron | 30.0% |
| ! | TGTTTTGTGCCTTAATCTTA+TGG | + | chr8_1:47130370-47130389 | None:intergenic | 30.0% |
| TCCTTTAATGAATTCTTTGC+GGG | - | chr8_1:47130437-47130456 | Msa1197020:intron | 30.0% | |
| ATTCTTGAGTAGCAAATTCA+AGG | - | chr8_1:47130502-47130521 | Msa1197020:intron | 30.0% | |
| TTTATTCTCTCTTCAGTGAA+AGG | + | chr8_1:47130626-47130645 | None:intergenic | 30.0% | |
| !! | CTTTTGGATGTTGTTTGCAA+GGG | + | chr8_1:47128859-47128878 | None:intergenic | 35.0% |
| !! | TTATGGATTCCGTTTTTCTG+TGG | + | chr8_1:47128920-47128939 | None:intergenic | 35.0% |
| ! | TTGAGGACTAGGTTTCTTTT+GGG | + | chr8_1:47128964-47128983 | None:intergenic | 35.0% |
| ATAGCACCACAATATTCCAT+CGG | + | chr8_1:47129024-47129043 | None:intergenic | 35.0% | |
| !! | TATTTTTCAGCATCATGGTG+TGG | - | chr8_1:47129107-47129126 | Msa1197020:intron | 35.0% |
| CGTGTCTCTGAATCAAAAAA+TGG | + | chr8_1:47129278-47129297 | None:intergenic | 35.0% | |
| ATACCCTTTCACATCAGAAA+GGG | - | chr8_1:47129418-47129437 | Msa1197020:CDS | 35.0% | |
| AGAGTTGAAAGATCAAGAAG+AGG | - | chr8_1:47129445-47129464 | Msa1197020:CDS | 35.0% | |
| CTAGCTTACTTCATTTCCAT+CGG | + | chr8_1:47129537-47129556 | None:intergenic | 35.0% | |
| CATGAAAGGTAAAGTCAGAT+TGG | + | chr8_1:47129623-47129642 | None:intergenic | 35.0% | |
| CAAAAAGCTGAAGGAAAATG+GGG | - | chr8_1:47129754-47129773 | Msa1197020:intron | 35.0% | |
| ! | AAGAATTAGAAAGTGTGCCT+TGG | - | chr8_1:47129831-47129850 | Msa1197020:intron | 35.0% |
| ! | GTATTGAATTAGTTTCGCAC+AGG | + | chr8_1:47129882-47129901 | None:intergenic | 35.0% |
| !! | GAAAACTTTTCAGGAGTGAA+TGG | + | chr8_1:47130010-47130029 | None:intergenic | 35.0% |
| ! | TCGAGTTCAGAAAACTTTTC+AGG | + | chr8_1:47130019-47130038 | None:intergenic | 35.0% |
| TGAACTCGATGAAATAGCAA+AGG | - | chr8_1:47130030-47130049 | Msa1197020:CDS | 35.0% | |
| ! | TCAAACACTTGAGTCAGTTT+TGG | - | chr8_1:47130066-47130085 | Msa1197020:CDS | 35.0% |
| CATTGACAAAGATGCTAAGA+AGG | - | chr8_1:47130111-47130130 | Msa1197020:CDS | 35.0% | |
| TTAAAAAGAGGGAATGATGG+GGG | + | chr8_1:47130182-47130201 | None:intergenic | 35.0% | |
| !!! | TGAGTTTTGGAAGAAAAGCA+CGG | + | chr8_1:47130337-47130356 | None:intergenic | 35.0% |
| TGAGGCATACCATAAGATTA+AGG | - | chr8_1:47130358-47130377 | Msa1197020:intron | 35.0% | |
| AAACAATGATGCACTTGAAG+TGG | - | chr8_1:47130385-47130404 | Msa1197020:intron | 35.0% | |
| TCCCGCAAAGAATTCATTAA+AGG | + | chr8_1:47130441-47130460 | None:intergenic | 35.0% | |
| ! | TCTTTTCTTGTGTCACCAAA+GGG | + | chr8_1:47130482-47130501 | None:intergenic | 35.0% |
| ! | TTCTTTTCTTGTGTCACCAA+AGG | + | chr8_1:47130483-47130502 | None:intergenic | 35.0% |
| ! | AGTAGCAAATTCAAGGTATC+TGG | - | chr8_1:47130509-47130528 | Msa1197020:intron | 35.0% |
| AAAAGAAATAGAGGCCCAAA+AGG | - | chr8_1:47130643-47130662 | Msa1197020:intron | 35.0% | |
| ! | CTTTGCAATGTCATCCTTTT+GGG | + | chr8_1:47130660-47130679 | None:intergenic | 35.0% |
| CAAAAGGATGACATTGCAAA+GGG | - | chr8_1:47130659-47130678 | Msa1197020:intron | 35.0% | |
| AAAAGGATGACATTGCAAAG+GGG | - | chr8_1:47130660-47130679 | Msa1197020:intron | 35.0% | |
| ATTTATAGGAGTGGAAAGCG+TGG | + | chr8_1:47128311-47128330 | None:intergenic | 40.0% | |
| !! | GGACGTCTTATTTATAGGAG+TGG | + | chr8_1:47128320-47128339 | None:intergenic | 40.0% |
| CGAAGAAGAAAGTCTCTATC+AGG | + | chr8_1:47128458-47128477 | None:intergenic | 40.0% | |
| !! | AAGTAACGGTAACGGAGTTA+CGG | + | chr8_1:47128513-47128532 | None:intergenic | 40.0% |
| GAGAAGAGAAGTAACGGTAA+CGG | + | chr8_1:47128521-47128540 | None:intergenic | 40.0% | |
| ! | TGTTGGGGGTTTTTGTATTC+AGG | + | chr8_1:47128830-47128849 | None:intergenic | 40.0% |
| !! | TTTGCAAGGGTGTCTTTGTT+GGG | + | chr8_1:47128846-47128865 | None:intergenic | 40.0% |
| !! | CCTTTTGGATGTTGTTTGCA+AGG | + | chr8_1:47128860-47128879 | None:intergenic | 40.0% |
| CCTTGCAAACAACATCCAAA+AGG | - | chr8_1:47128857-47128876 | Msa1197020:CDS | 40.0% | |
| ! | TCTAGGAGTCAATTTCAGGT+GGG | + | chr8_1:47128890-47128909 | None:intergenic | 40.0% |
| GTTGTCTAGGAGTCAATTTC+AGG | + | chr8_1:47128894-47128913 | None:intergenic | 40.0% | |
| ! | TGAGGACTAGGTTTCTTTTG+GGG | + | chr8_1:47128963-47128982 | None:intergenic | 40.0% |
| ! | GTTGAGGACTAGGTTTCTTT+TGG | + | chr8_1:47128965-47128984 | None:intergenic | 40.0% |
| ! | CTTGTACCGATGGAATATTG+TGG | - | chr8_1:47129015-47129034 | Msa1197020:CDS | 40.0% |
| AGCTTGAAGGGAAAGAAACT+TGG | - | chr8_1:47129080-47129099 | Msa1197020:CDS | 40.0% | |
| TCATCAAGCAATGCAAGATG+AGG | + | chr8_1:47129338-47129357 | None:intergenic | 40.0% | |
| CATACCCTTTCACATCAGAA+AGG | - | chr8_1:47129417-47129436 | Msa1197020:CDS | 40.0% | |
| GAACCCTTTCTGATGTGAAA+GGG | + | chr8_1:47129424-47129443 | None:intergenic | 40.0% | |
| TGAACCCTTTCTGATGTGAA+AGG | + | chr8_1:47129425-47129444 | None:intergenic | 40.0% | |
| ATCAAGAAGAGGAAGCTAAG+AGG | - | chr8_1:47129456-47129475 | Msa1197020:CDS | 40.0% | |
| GGATGATATCACAAAGTCAC+GGG | + | chr8_1:47129516-47129535 | None:intergenic | 40.0% | |
| CGGATGATATCACAAAGTCA+CGG | + | chr8_1:47129517-47129536 | None:intergenic | 40.0% | |
| GACTTTGTGATATCATCCGA+TGG | - | chr8_1:47129518-47129537 | Msa1197020:CDS | 40.0% | |
| GTATCTGTTGTGCACATGAA+AGG | + | chr8_1:47129637-47129656 | None:intergenic | 40.0% | |
| ATACCTATCTCTGAGCTTGA+GGG | - | chr8_1:47129653-47129672 | Msa1197020:CDS | 40.0% | |
| GGAGGTTTACAAAAAGCTGA+AGG | - | chr8_1:47129745-47129764 | Msa1197020:intron | 40.0% | |
| ! | TCCCTACCTTGGTTGTTATT+GGG | - | chr8_1:47129918-47129937 | Msa1197020:CDS | 40.0% |
| ! | TGGTATGCCTCAATGAGTTT+TGG | + | chr8_1:47130350-47130369 | None:intergenic | 40.0% |
| ! | GTGGTTTTCATCTCAAGTGA+CGG | - | chr8_1:47130404-47130423 | Msa1197020:intron | 40.0% |
| ! | TGGTTTTCATCTCAAGTGAC+GGG | - | chr8_1:47130405-47130424 | Msa1197020:intron | 40.0% |
| ! | CCTTTGCAATGTCATCCTTT+TGG | + | chr8_1:47130661-47130680 | None:intergenic | 40.0% |
| CCAAAAGGATGACATTGCAA+AGG | - | chr8_1:47130658-47130677 | Msa1197020:intron | 40.0% | |
| TCACAAACCCATCCATCTTT+GGG | + | chr8_1:47130881-47130900 | None:intergenic | 40.0% | |
| ATCACAAACCCATCCATCTT+TGG | + | chr8_1:47130882-47130901 | None:intergenic | 40.0% | |
| ! | AAAGATGGATGGGTTTGTGA+TGG | - | chr8_1:47130881-47130900 | Msa1197020:intron | 40.0% |
| AACAAGCAGATTTCAGGCTT+TGG | + | chr8_1:47130918-47130937 | None:intergenic | 40.0% | |
| TCTTTAGTCACTCACTCTCC+AGG | - | chr8_1:47128374-47128393 | Msa1197020:three_prime_UTR | 45.0% | |
| GACTTTCTTCTTCGCAACAC+CGG | - | chr8_1:47128464-47128483 | Msa1197020:CDS | 45.0% | |
| ACCGGTGAAGTACAGATAGA+AGG | - | chr8_1:47128737-47128756 | Msa1197020:CDS | 45.0% | |
| GCCTTCTATCTGTACTTCAC+CGG | + | chr8_1:47128741-47128760 | None:intergenic | 45.0% | |
| ATCGGTGAAGTACAGACAGA+AGG | - | chr8_1:47128784-47128803 | Msa1197020:CDS | 45.0% | |
| TCAGGTGTTCCGCCTATATA+CGG | + | chr8_1:47128812-47128831 | None:intergenic | 45.0% | |
| !! | TTGCAAGGGTGTCTTTGTTG+GGG | + | chr8_1:47128845-47128864 | None:intergenic | 45.0% |
| !! | GTTTGCAAGGGTGTCTTTGT+TGG | + | chr8_1:47128847-47128866 | None:intergenic | 45.0% |
| ! | CTAGGAGTCAATTTCAGGTG+GGG | + | chr8_1:47128889-47128908 | None:intergenic | 45.0% |
| GTCTAGGAGTCAATTTCAGG+TGG | + | chr8_1:47128891-47128910 | None:intergenic | 45.0% | |
| ! | TTTTCTGTGGTCGGTTGTCT+AGG | + | chr8_1:47128907-47128926 | None:intergenic | 45.0% |
| GACAACCGACCACAGAAAAA+CGG | - | chr8_1:47128908-47128927 | Msa1197020:CDS | 45.0% | |
| !! | GGATTCCGTTTTTCTGTGGT+CGG | + | chr8_1:47128916-47128935 | None:intergenic | 45.0% |
| AGTAGTGACGATGGGTGTTA+TGG | + | chr8_1:47128937-47128956 | None:intergenic | 45.0% | |
| ! | GAGGACTAGGTTTCTTTTGG+GGG | + | chr8_1:47128962-47128981 | None:intergenic | 45.0% |
| TACGACGAACTCTCTCCAAA+CGG | - | chr8_1:47129167-47129186 | Msa1197020:intron | 45.0% | |
| ACAACCTCAAAGTCACCGTT+TGG | + | chr8_1:47129185-47129204 | None:intergenic | 45.0% | |
| CTCAGCCGATAAAGATGATG+AGG | - | chr8_1:47129211-47129230 | Msa1197020:intron | 45.0% | |
| !!! | GCTACTTTTCCAAGATGCCA+TGG | - | chr8_1:47129243-47129262 | Msa1197020:intron | 45.0% |
| AAAAATGGGATAGCCAGCCA+TGG | + | chr8_1:47129263-47129282 | None:intergenic | 45.0% | |
| CTTGCATTGCTTGATGAAGC+TGG | - | chr8_1:47129341-47129360 | Msa1197020:CDS | 45.0% | |
| ATGCTTCAGCGCCATAAACA+CGG | + | chr8_1:47129400-47129419 | None:intergenic | 45.0% | |
| CCAATATCGATCTCAAGGAC+TGG | + | chr8_1:47129484-47129503 | None:intergenic | 45.0% | |
| CCAGTCCTTGAGATCGATAT+TGG | - | chr8_1:47129481-47129500 | Msa1197020:CDS | 45.0% | |
| AGAGGCCAATATCGATCTCA+AGG | + | chr8_1:47129489-47129508 | None:intergenic | 45.0% | |
| GATACCTATCTCTGAGCTTG+AGG | - | chr8_1:47129652-47129671 | Msa1197020:CDS | 45.0% | |
| TTTCCCTCAAGCTCAGAGAT+AGG | + | chr8_1:47129659-47129678 | None:intergenic | 45.0% | |
| TTGAGAGGCAAGGATAACCA+AGG | + | chr8_1:47129851-47129870 | None:intergenic | 45.0% | |
| TTGGTTATCCTTGCCTCTCA+AGG | - | chr8_1:47129850-47129869 | Msa1197020:CDS | 45.0% | |
| CTCCCTACCTTGGTTGTTAT+TGG | - | chr8_1:47129917-47129936 | Msa1197020:CDS | 45.0% | |
| GCCCAATAACAACCAAGGTA+GGG | + | chr8_1:47129922-47129941 | None:intergenic | 45.0% | |
| ATCTGGCCCAATAACAACCA+AGG | + | chr8_1:47129927-47129946 | None:intergenic | 45.0% | |
| ! | TTGGTTGTTATTGGGCCAGA+TGG | - | chr8_1:47129926-47129945 | Msa1197020:CDS | 45.0% |
| ! | TGGTTGTTATTGGGCCAGAT+GGG | - | chr8_1:47129927-47129946 | Msa1197020:CDS | 45.0% |
| ! | GGATGTAGAGTTTTCCCATC+TGG | + | chr8_1:47129944-47129963 | None:intergenic | 45.0% |
| ATCAACCCCATGATCCTCAA+TGG | + | chr8_1:47129981-47130000 | None:intergenic | 45.0% | |
| CGATGAAATAGCAAAGGCCA+AGG | - | chr8_1:47130036-47130055 | Msa1197020:CDS | 45.0% | |
| TGAAATAGCAAAGGCCAAGG+AGG | - | chr8_1:47130039-47130058 | Msa1197020:CDS | 45.0% | |
| ! | AAGTGTTTGAGATGCCTCCT+TGG | + | chr8_1:47130056-47130075 | None:intergenic | 45.0% |
| !!! | CTTGAGTCAGTTTTGGTGTC+TGG | - | chr8_1:47130073-47130092 | Msa1197020:CDS | 45.0% |
| TCTGACACCGGAATCTGAAA+TGG | + | chr8_1:47130260-47130279 | None:intergenic | 45.0% | |
| ! | ATTCCGGTGTCAGAGTTAGA+GGG | - | chr8_1:47130266-47130285 | Msa1197020:CDS | 45.0% |
| ! | TTGGAAGAAAAGCACGGCAT+GGG | + | chr8_1:47130331-47130350 | None:intergenic | 45.0% |
| ! | TTTGGAAGAAAAGCACGGCA+TGG | + | chr8_1:47130332-47130351 | None:intergenic | 45.0% |
| ! | GGTTTTCATCTCAAGTGACG+GGG | - | chr8_1:47130406-47130425 | Msa1197020:intron | 45.0% |
| AATTCTTTGCGGGAATGCCA+TGG | - | chr8_1:47130447-47130466 | Msa1197020:intron | 45.0% | |
| CGCAATGTTTATTGCTGCGA+TGG | - | chr8_1:47130737-47130756 | Msa1197020:intron | 45.0% | |
| TTATTGCTGCGATGGTTGTG+AGG | - | chr8_1:47130745-47130764 | Msa1197020:intron | 45.0% | |
| GTGAGGATGAGGGAGATAAT+TGG | - | chr8_1:47130762-47130781 | Msa1197020:intron | 45.0% | |
| ! | GGAGACAAAGGAAGCATACA+TGG | - | chr8_1:47130836-47130855 | Msa1197020:intron | 45.0% |
| TTTGGGCTTCTCTTCTTCCT+TGG | + | chr8_1:47130864-47130883 | None:intergenic | 45.0% | |
| GAAGAAGAGAAGCCCAAAGA+TGG | - | chr8_1:47130866-47130885 | Msa1197020:intron | 45.0% | |
| AAGAGAAGCCCAAAGATGGA+TGG | - | chr8_1:47130870-47130889 | Msa1197020:intron | 45.0% | |
| AGAGAAGCCCAAAGATGGAT+GGG | - | chr8_1:47130871-47130890 | Msa1197020:intron | 45.0% | |
| AATCTTGTGCATGAGTCGTC+TGG | - | chr8_1:47131066-47131085 | Msa1197020:five_prime_UTR | 45.0% | |
| !!! | TATTAATAACAAAATTTTTT+TGG | + | chr8_1:47130222-47130241 | None:intergenic | 5.0% |
| ! | TATAGGAGTGGAAAGCGTGG+AGG | + | chr8_1:47128308-47128327 | None:intergenic | 50.0% |
| ! | GAACACAGACTAGCCGAACA+AGG | + | chr8_1:47128341-47128360 | None:intergenic | 50.0% |
| CACTCACTCTCCAGGAACAA+TGG | - | chr8_1:47128382-47128401 | Msa1197020:three_prime_UTR | 50.0% | |
| TCACTCTCCAGGAACAATGG+CGG | - | chr8_1:47128385-47128404 | Msa1197020:three_prime_UTR | 50.0% | |
| ACAGAATCCGCCATTGTTCC+TGG | + | chr8_1:47128395-47128414 | None:intergenic | 50.0% | |
| CAGTTGTAGTACCTGATCGC+CGG | + | chr8_1:47128486-47128505 | None:intergenic | 50.0% | |
| !! | TAACGGTAACGGAGTTACGG+TGG | + | chr8_1:47128510-47128529 | None:intergenic | 50.0% |
| GTCTCTGTTCGTCTTGTGCA+GGG | + | chr8_1:47128719-47128738 | None:intergenic | 50.0% | |
| TGCACAAGACGAACAGAGAC+CGG | - | chr8_1:47128719-47128738 | Msa1197020:CDS | 50.0% | |
| CACCGATCTCCGCCTATATA+CGG | + | chr8_1:47128771-47128790 | None:intergenic | 50.0% | |
| !! | AGACAGAAGGCGCCGTATAT+AGG | - | chr8_1:47128797-47128816 | Msa1197020:CDS | 50.0% |
| !! | TGCAAGGGTGTCTTTGTTGG+GGG | + | chr8_1:47128844-47128863 | None:intergenic | 50.0% |
| !! | CAGTTTGGGTGTTGAGGACT+AGG | + | chr8_1:47128975-47128994 | None:intergenic | 50.0% |
| ! | CCACTTCAGTTTGGGTGTTG+AGG | + | chr8_1:47128981-47129000 | None:intergenic | 50.0% |
| CCTCAACACCCAAACTGAAG+TGG | - | chr8_1:47128978-47128997 | Msa1197020:CDS | 50.0% | |
| GTTGGAGTGAATCCTCGACA+CGG | + | chr8_1:47129134-47129153 | None:intergenic | 50.0% | |
| TCGAGGATTCACTCCAACGT+TGG | - | chr8_1:47129136-47129155 | Msa1197020:intron | 50.0% | |
| AGGATTCACTCCAACGTTGG+TGG | - | chr8_1:47129139-47129158 | Msa1197020:intron | 50.0% | |
| ! | ATTCACTCCAACGTTGGTGG+AGG | - | chr8_1:47129142-47129161 | Msa1197020:intron | 50.0% |
| CTCTCCAAACGGTGACTTTG+AGG | - | chr8_1:47129178-47129197 | Msa1197020:intron | 50.0% | |
| ! | CTTTTCCAAGATGCCATGGC+TGG | - | chr8_1:47129247-47129266 | Msa1197020:intron | 50.0% |
| GAGCTTGAGGGAAAGACAGT+TGG | - | chr8_1:47129665-47129684 | Msa1197020:CDS | 50.0% | |
| !! | GGTTTTGTCCTTGAGAGGCA+AGG | + | chr8_1:47129861-47129880 | None:intergenic | 50.0% |
| !! | GCACAGGTTTTGTCCTTGAG+AGG | + | chr8_1:47129866-47129885 | None:intergenic | 50.0% |
| GCTATCAGTTCTCCCTACCT+TGG | - | chr8_1:47129907-47129926 | Msa1197020:CDS | 50.0% | |
| GGCCCAATAACAACCAAGGT+AGG | + | chr8_1:47129923-47129942 | None:intergenic | 50.0% | |
| TCTACATCCTAATGCCGCTG+AGG | - | chr8_1:47129955-47129974 | Msa1197020:CDS | 50.0% | |
| ATGATCCTCAATGGCCTCAG+CGG | + | chr8_1:47129972-47129991 | None:intergenic | 50.0% | |
| CTGAGGCCATTGAGGATCAT+GGG | - | chr8_1:47129972-47129991 | Msa1197020:CDS | 50.0% | |
| TGAGGCCATTGAGGATCATG+GGG | - | chr8_1:47129973-47129992 | Msa1197020:CDS | 50.0% | |
| ! | GATTCCGGTGTCAGAGTTAG+AGG | - | chr8_1:47130265-47130284 | Msa1197020:CDS | 50.0% |
| ! | TTCCGGTGTCAGAGTTAGAG+GGG | - | chr8_1:47130267-47130286 | Msa1197020:CDS | 50.0% |
| TTCCCCTCTAACTCTGACAC+CGG | + | chr8_1:47130272-47130291 | None:intergenic | 50.0% | |
| ! | TGGAAGAAAAGCACGGCATG+GGG | + | chr8_1:47130330-47130349 | None:intergenic | 50.0% |
| GAGCTTCTTTCGTGACAGTC+TGG | + | chr8_1:47130568-47130587 | None:intergenic | 50.0% | |
| ACTGTCACGAAAGAAGCTCG+AGG | - | chr8_1:47130569-47130588 | Msa1197020:intron | 50.0% | |
| AAAGAAGCTCGAGGTCTGGT+TGG | - | chr8_1:47130578-47130597 | Msa1197020:intron | 50.0% | |
| AAGAAGCTCGAGGTCTGGTT+GGG | - | chr8_1:47130579-47130598 | Msa1197020:intron | 50.0% | |
| ! | GAGGTCTGGTTGGGCTTTAT+GGG | - | chr8_1:47130588-47130607 | Msa1197020:intron | 50.0% |
| ! | AGGTCTGGTTGGGCTTTATG+GGG | - | chr8_1:47130589-47130608 | Msa1197020:intron | 50.0% |
| AGGATGACATTGCAAAGGGG+TGG | - | chr8_1:47130663-47130682 | Msa1197020:intron | 50.0% | |
| GTTTCATGCGTCACCTTCTC+AGG | + | chr8_1:47130689-47130708 | None:intergenic | 50.0% | |
| TGCGATGGTTGTGAGGATGA+GGG | - | chr8_1:47130752-47130771 | Msa1197020:intron | 50.0% | |
| TCTCCATCCAAATTGTGCGC+TGG | - | chr8_1:47130814-47130833 | Msa1197020:intron | 50.0% | |
| CTCCATCCAAATTGTGCGCT+GGG | - | chr8_1:47130815-47130834 | Msa1197020:intron | 50.0% | |
| TTGTCTCCCAGCGCACAATT+TGG | + | chr8_1:47130824-47130843 | None:intergenic | 50.0% | |
| AATTGTGCGCTGGGAGACAA+AGG | - | chr8_1:47130824-47130843 | Msa1197020:intron | 50.0% | |
| ! | AGGAAGCATACATGGTGCCA+AGG | - | chr8_1:47130844-47130863 | Msa1197020:intron | 50.0% |
| GGTCTCTGTTCGTCTTGTGC+AGG | + | chr8_1:47128720-47128739 | None:intergenic | 55.0% | |
| CGATCTCCGCCTATATACGG+CGG | + | chr8_1:47128768-47128787 | None:intergenic | 55.0% | |
| CGCCGTATATAGGCGGAGAT+CGG | - | chr8_1:47128766-47128785 | Msa1197020:CDS | 55.0% | |
| !! | CAGAAGGCGCCGTATATAGG+CGG | - | chr8_1:47128800-47128819 | Msa1197020:CDS | 55.0% |
| ! | GGAGTCAATTTCAGGTGGGG+TGG | + | chr8_1:47128886-47128905 | None:intergenic | 55.0% |
| TGGGGGAGAGTAGTGACGAT+GGG | + | chr8_1:47128945-47128964 | None:intergenic | 55.0% | |
| TTGGGGGAGAGTAGTGACGA+TGG | + | chr8_1:47128946-47128965 | None:intergenic | 55.0% | |
| TCGTAGACCTCCACCAACGT+TGG | + | chr8_1:47129152-47129171 | None:intergenic | 55.0% | |
| GATAGCCAGCCATGGCATCT+TGG | + | chr8_1:47129255-47129274 | None:intergenic | 55.0% | |
| CACAAAGTCACGGGAACGAG+AGG | + | chr8_1:47129507-47129526 | None:intergenic | 55.0% | |
| TCAATGGCCTCAGCGGCATT+AGG | + | chr8_1:47129965-47129984 | None:intergenic | 55.0% | |
| TAATGCCGCTGAGGCCATTG+AGG | - | chr8_1:47129964-47129983 | Msa1197020:CDS | 55.0% | |
| GCTGAGGCCATTGAGGATCA+TGG | - | chr8_1:47129971-47129990 | Msa1197020:CDS | 55.0% | |
| !! | AGTGGGCTGAGAAGTAGAGG+AGG | + | chr8_1:47130301-47130320 | None:intergenic | 55.0% |
| TCCTCTACTTCTCAGCCCAC+TGG | - | chr8_1:47130300-47130319 | Msa1197020:intron | 55.0% | |
| !! | ACCAGTGGGCTGAGAAGTAG+AGG | + | chr8_1:47130304-47130323 | None:intergenic | 55.0% |
| ! | GGAAGAAAAGCACGGCATGG+GGG | + | chr8_1:47130329-47130348 | None:intergenic | 55.0% |
| ATCCCCAAGCTCGTGGCAAT+TGG | - | chr8_1:47130533-47130552 | Msa1197020:intron | 55.0% | |
| TCCCCAAGCTCGTGGCAATT+GGG | - | chr8_1:47130534-47130553 | Msa1197020:intron | 55.0% | |
| TTCGTGACAGTCTGGCCACT+TGG | + | chr8_1:47130560-47130579 | None:intergenic | 55.0% | |
| CACGAAAGAAGCTCGAGGTC+TGG | - | chr8_1:47130574-47130593 | Msa1197020:intron | 55.0% | |
| CGAGGTCTGGTTGGGCTTTA+TGG | - | chr8_1:47130587-47130606 | Msa1197020:intron | 55.0% | |
| CTGCGATGGTTGTGAGGATG+AGG | - | chr8_1:47130751-47130770 | Msa1197020:intron | 55.0% | |
| CTCCCAGCGCACAATTTGGA+TGG | + | chr8_1:47130820-47130839 | None:intergenic | 55.0% | |
| TCTTCGCAACACCGGCGATC+AGG | - | chr8_1:47128472-47128491 | Msa1197020:CDS | 60.0% | |
| TCTCCGCCTATATACGGCGG+CGG | + | chr8_1:47128765-47128784 | None:intergenic | 60.0% | |
| ! | CAGGTGGGGTGGTGTCCTTT+TGG | + | chr8_1:47128875-47128894 | None:intergenic | 60.0% |
| TCATGGTGTGGTCCGTGTCG+AGG | - | chr8_1:47129119-47129138 | Msa1197020:intron | 60.0% | |
| CTTTGCGGGAATGCCATGGC+TGG | - | chr8_1:47130451-47130470 | Msa1197020:intron | 60.0% | |
| !! | CCAAAGGGAAGTGCCAGCCA+TGG | + | chr8_1:47130467-47130486 | None:intergenic | 60.0% |
| CCATGGCTGGCACTTCCCTT+TGG | - | chr8_1:47130464-47130483 | Msa1197020:intron | 60.0% | |
| ATCTGGCATCCCCAAGCTCG+TGG | - | chr8_1:47130526-47130545 | Msa1197020:intron | 60.0% | |
| GCCCAATTGCCACGAGCTTG+GGG | + | chr8_1:47130538-47130557 | None:intergenic | 60.0% | |
| GGCCCAATTGCCACGAGCTT+GGG | + | chr8_1:47130539-47130558 | None:intergenic | 60.0% | |
| TGGCCCAATTGCCACGAGCT+TGG | + | chr8_1:47130540-47130559 | None:intergenic | 60.0% | |
| CTCGTGGCAATTGGGCCAAG+TGG | - | chr8_1:47130542-47130561 | Msa1197020:intron | 60.0% | |
| TGCAAAGGGGTGGCCTGAGA+AGG | - | chr8_1:47130673-47130692 | Msa1197020:intron | 60.0% | |
| !! | AAGGCGCCGCCGCCGTATAT+AGG | - | chr8_1:47128756-47128775 | Msa1197020:CDS | 65.0% |
| ACGGCATGGGGGACACCAGT+GGG | + | chr8_1:47130318-47130337 | None:intergenic | 65.0% | |
| GCGCCGCCGCCGTATATAGG+CGG | - | chr8_1:47128759-47128778 | Msa1197020:CDS | 70.0% | |
| CACGGCATGGGGGACACCAG+TGG | + | chr8_1:47130319-47130338 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 47128269 | 47131116 | 47128269 | ID=Msa1197020;Name=Msa1197020 |
| chr8_1 | mRNA | 47128269 | 47131116 | 47128269 | ID=Msa1197020-mRNA-1;Parent=Msa1197020;Name=Msa1197020-mRNA-1;_AED=0.08;_eAED=0.08;_QI=132|1|1|1|0.75|0.6|5|165|570 |
| chr8_1 | exon | 47128269 | 47128323 | 47128269 | ID=Msa1197020-mRNA-1:exon:14927;Parent=Msa1197020-mRNA-1 |
| chr8_1 | exon | 47128350 | 47129119 | 47128350 | ID=Msa1197020-mRNA-1:exon:14926;Parent=Msa1197020-mRNA-1 |
| chr8_1 | exon | 47129253 | 47129732 | 47129253 | ID=Msa1197020-mRNA-1:exon:14925;Parent=Msa1197020-mRNA-1 |
| chr8_1 | exon | 47129838 | 47130317 | 47129838 | ID=Msa1197020-mRNA-1:exon:14924;Parent=Msa1197020-mRNA-1 |
| chr8_1 | exon | 47130892 | 47131116 | 47130892 | ID=Msa1197020-mRNA-1:exon:14923;Parent=Msa1197020-mRNA-1 |
| chr8_1 | five_prime_UTR | 47130985 | 47131116 | 47130985 | ID=Msa1197020-mRNA-1:five_prime_utr;Parent=Msa1197020-mRNA-1 |
| chr8_1 | CDS | 47130892 | 47130984 | 47130892 | ID=Msa1197020-mRNA-1:cds;Parent=Msa1197020-mRNA-1 |
| chr8_1 | CDS | 47129838 | 47130317 | 47129838 | ID=Msa1197020-mRNA-1:cds;Parent=Msa1197020-mRNA-1 |
| chr8_1 | CDS | 47129253 | 47129732 | 47129253 | ID=Msa1197020-mRNA-1:cds;Parent=Msa1197020-mRNA-1 |
| chr8_1 | CDS | 47128460 | 47129119 | 47128460 | ID=Msa1197020-mRNA-1:cds;Parent=Msa1197020-mRNA-1 |
| chr8_1 | three_prime_UTR | 47128350 | 47128459 | 47128350 | ID=Msa1197020-mRNA-1:three_prime_utr;Parent=Msa1197020-mRNA-1 |
| chr8_1 | three_prime_UTR | 47128269 | 47128323 | 47128269 | ID=Msa1197020-mRNA-1:three_prime_utr;Parent=Msa1197020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
