AlfalfaGEDB | Msa0393650

M. sativa cultivar zhongmu-4 / Msa0393650

KEGG: K13989
GO: -
PFAM: PF04511.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393650	XP_013459201.1	89.151	212	11	1	1	200	1	212	8.93e-130	379

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393650	sp\|Q8VZU9\|DERL1_ARATH	58.454	207	74	1	1	195	1	207	5.85e-84	255

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393650	A0A072V3Y3	89.151	212	11	1	1	200	1	212	4.26e-130	379

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0179860	Msa0393650	0.806748	7.076202e-50	-8.615850e-47
Msa0212310	Msa0393650	0.807453	5.018878e-50	-8.615850e-47
Msa0245880	Msa0393650	0.804813	1.804166e-49	-8.615850e-47
Msa0313920	Msa0393650	0.802123	6.514298e-49	-8.615850e-47
Msa0347180	Msa0393650	0.880255	6.383153e-70	-8.615850e-47
Msa0393650	Msa0445040	0.872354	3.392790e-67	-8.615850e-47
Msa0393650	Msa0488940	0.843248	1.575050e-58	-8.615850e-47
Msa0393650	Msa0528970	0.807061	6.074233e-50	-8.615850e-47
Msa0393650	Msa0533290	0.804690	1.914113e-49	-8.615850e-47
Msa0393650	Msa0553460	0.804172	2.454314e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393650	MtrunA17_Chr3g0079071	89.151	212	11	1	1	200	1	212	8.21e-134	379
Msa0393650	MtrunA17_Chr8g0389711	57.328	232	87	1	1	220	1	232	1.22e-92	273
Msa0393650	MtrunA17_Chr2g0288201	31.579	209	122	2	6	193	7	215	1.05e-28	109

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0393650	AT4G29330.2	58.373	209	75	1	1	197	1	209	2.30e-85	254
Msa0393650	AT4G29330.1	58.454	207	74	1	1	195	1	207	5.94e-85	255
Msa0393650	AT4G04860.1	30.732	205	121	2	6	189	7	211	3.20e-28	108
Msa0393650	AT4G21810.1	30.732	205	121	2	6	189	7	211	6.59e-27	105

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Find 55 sgRNAs with CRISPR-Local

Find 565 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAATCAATAGTTTGA+TGG	0.401835	3_2:-7731419	Msa0393650:three_prime_UTR
AAAGCCAGACATTCTAGGGA+TGG	0.549511	3_2:-7739559	Msa0393650:CDS
AACACTATGAAGCACAAGAA+AGG	0.518292	3_2:+7742548	None:intergenic
AAGAATCAACATTTATGGTT+TGG	0.373235	3_2:-7740830	Msa0393650:CDS
AATCCAGTGAGCAAGACTTT+TGG	0.359069	3_2:-7731941	Msa0393650:CDS
AATGCAAGAATCAACATTTA+TGG	0.126417	3_2:-7740835	Msa0393650:CDS
ACAGTGCTTCATCCTCTTGC+TGG	0.343953	3_2:-7739510	Msa0393650:CDS
ACTAAAGAAATTCCCATGAA+TGG	0.439121	3_2:+7740895	None:intergenic
ACTCCAAAAGTCTTGCTCAC+TGG	0.485579	3_2:+7731938	None:intergenic
ACTCCAAAAGTCTTGCTCAC+TGG	0.489230	3_2:+7742027	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATTGAGACATGCTTAGTA+TGG	-	chr3_2:7731695-7731714	Msa0393650:intron	30.0%
ATTCATATAATATGCAGCTG+TGG	+	chr3_2:7731924-7731943	None:intergenic	30.0%
GCATGATCAAGAAAACTAAA+CGG	+	chr3_2:7732125-7732144	None:intergenic	30.0%
ACTGCAAATGGAAATGAAAA+TGG	+	chr3_2:7732210-7732229	None:intergenic	30.0%
TGTGATCACATAATGTTACA+TGG	+	chr3_2:7732343-7732362	None:intergenic	30.0%
CATTATGTGATCACAATTTC+AGG	-	chr3_2:7732348-7732367	Msa0393650:intron	30.0%
GAATTGTACAGAGCAAAATA+TGG	-	chr3_2:7732613-7732632	Msa0393650:intron	30.0%
AGCAAAATATGGTGTTTCAT+TGG	-	chr3_2:7732624-7732643	Msa0393650:intron	30.0%
AGTCTGATGGTTAAAAATTC+GGG	-	chr3_2:7732771-7732790	Msa0393650:intron	30.0%
ATGAATGGAGACCATAAATA+TGG	+	chr3_2:7733004-7733023	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	7731361	7742572	7731361	ID=Msa0393650;Name=Msa0393650
chr3_2	mRNA	7731361	7742572	7731361	ID=Msa0393650-mRNA-1;Parent=Msa0393650;Name=Msa0393650-mRNA-1;_AED=0.20;_eAED=0.20;_QI=64\|0.57\|0.75\|1\|0.57\|0.75\|8\|128\|276
chr3_2	exon	7731361	7731646	7731361	ID=Msa0393650-mRNA-1:exon:2029;Parent=Msa0393650-mRNA-1
chr3_2	exon	7731867	7731964	7731867	ID=Msa0393650-mRNA-1:exon:2028;Parent=Msa0393650-mRNA-1
chr3_2	exon	7739477	7739637	7739477	ID=Msa0393650-mRNA-1:exon:2027;Parent=Msa0393650-mRNA-1
chr3_2	exon	7740819	7740947	7740819	ID=Msa0393650-mRNA-1:exon:2026;Parent=Msa0393650-mRNA-1
chr3_2	exon	7741252	7741309	7741252	ID=Msa0393650-mRNA-1:exon:2025;Parent=Msa0393650-mRNA-1
chr3_2	exon	7741689	7741762	7741689	ID=Msa0393650-mRNA-1:exon:2024;Parent=Msa0393650-mRNA-1
chr3_2	exon	7741933	7742068	7741933	ID=Msa0393650-mRNA-1:exon:2023;Parent=Msa0393650-mRNA-1
chr3_2	exon	7742492	7742572	7742492	ID=Msa0393650-mRNA-1:exon:2022;Parent=Msa0393650-mRNA-1
chr3_2	five_prime_UTR	7742509	7742572	7742509	ID=Msa0393650-mRNA-1:five_prime_utr;Parent=Msa0393650-mRNA-1
chr3_2	CDS	7742492	7742508	7742492	ID=Msa0393650-mRNA-1:cds;Parent=Msa0393650-mRNA-1
chr3_2	CDS	7741933	7742068	7741933	ID=Msa0393650-mRNA-1:cds;Parent=Msa0393650-mRNA-1
chr3_2	CDS	7741689	7741762	7741689	ID=Msa0393650-mRNA-1:cds;Parent=Msa0393650-mRNA-1
chr3_2	CDS	7741252	7741309	7741252	ID=Msa0393650-mRNA-1:cds;Parent=Msa0393650-mRNA-1
chr3_2	CDS	7740819	7740947	7740819	ID=Msa0393650-mRNA-1:cds;Parent=Msa0393650-mRNA-1
chr3_2	CDS	7739477	7739637	7739477	ID=Msa0393650-mRNA-1:cds;Parent=Msa0393650-mRNA-1
chr3_2	CDS	7731867	7731964	7731867	ID=Msa0393650-mRNA-1:cds;Parent=Msa0393650-mRNA-1
chr3_2	CDS	7731489	7731646	7731489	ID=Msa0393650-mRNA-1:cds;Parent=Msa0393650-mRNA-1
chr3_2	three_prime_UTR	7731361	7731488	7731361	ID=Msa0393650-mRNA-1:three_prime_utr;Parent=Msa0393650-mRNA-1

Gene Sequence

>Msa0393650

ATGTCTACACCAGCAGAATACTTCTGGTCTTTACCTCCAGTGAGCAAGACTTTTGGAGTGGCATGTTTCATGACCACAGCTGCATATTATATGAATCTTTATGATGCAGAGAGCATAGCACTGTTTTATGGCTTAGTGTTTAAACGACTTCAGGTTTGGAGGCTTATCACAAATTTCTTCTTTCTTGGACCATTTTCATTTCCATTTGCAGTTCGTCTGATAATGATAGCAAAATATGGTGTTTCATTGGAAAGAGGTCCATTTGACAAGAGAACTGCAGATTTTGTGATGGCTGCTGTGCCATATTTATGGTCTCCATTCATGGGAATTTCTTTAGTTTTCATGATTGTCTATGTTTGGAGCCGTGAATTTCCAAATGCAAGAATCAACATTTATGGTTTGGTATCATTGAAGGGTTTTTACCTTCCATGGGCTATGCTAGCACTGGATTTGATATTCGGAAATCCTTTAAAGCCAGACATTCTAGGGATGGTTGCAGGACACTTATATTACTTCTTAACAGTGCTTCATCCTCTTGCTGGTGGAAAGTTCAAGTTCAATACTCCTCTCTTAGTTAATCCAGTGAGCAAGACTTTTGGAGTGGCATGTTTAATGACCACAGCTGCATATTATCTGAATCTTTATGATGCAGAGAGCAAACGACTTCAGGTTTGTTTGGAGGCTTATCACAAATTTCTTCTTTCGTGGACCATTTTCATTTCAATTTGCAGTTTGTCTGATAATGATGTAAGTAGCTTGATTGTCTATGTTTGGAGCCGTGAATTTCCAGATGCACGAATCGACCTTTATGACTTGTTAAAGGTATGTTGA

Protein sequence

>Msa0393650

MSTPAEYFWSLPPVSKTFGVACFMTTAAYYMNLYDAESIALFYGLVFKRLQVWRLITNFFFLGPFSFPFAVRLIMIAKYGVSLERGPFDKRTADFVMAAVPYLWSPFMGISLVFMIVYVWSREFPNARINIYGLVSLKGFYLPWAMLALDLIFGNPLKPDILGMVAGHLYYFLTVLHPLAGGKFKFNTPLLVNPVSKTFGVACLMTTAAYYLNLYDAESKRLQVCLEAYHKFLLSWTIFISICSLSDNDVSSLIVYVWSREFPDARIDLYDLLKVC*