Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1027180 | Msa1197370 | 0.840571 | 8.024995e-58 | -8.615850e-47 |
Msa1154820 | Msa1197370 | 0.849647 | 2.827746e-60 | -8.615850e-47 |
Msa1197370 | Msa1348480 | 0.823686 | 1.211756e-53 | -8.615850e-47 |
Msa0947410 | Msa1197370 | 0.852828 | 3.573966e-61 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 77 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGAAAGCACTTGTTATTTA+TGG | 0.131236 | 8_1:-47662845 | Msa1197370:CDS |
GAAATAGCTCCATTTATATA+AGG | 0.225284 | 8_1:-47661790 | Msa1197370:three_prime_UTR |
TATCCAAACCCTTATATAAA+TGG | 0.243709 | 8_1:+47661781 | Msa1197360:intron |
AAAATTTCTCGGGCTTTATA+TGG | 0.250180 | 8_1:-47662173 | Msa1197370:three_prime_UTR |
AGAGCTACTCATCAAATTTC+AGG | 0.270993 | 8_1:+47662812 | None:intergenic |
GCAGATCACCTGGTCTTAAA+TGG | 0.311454 | 8_1:-47661968 | Msa1197370:three_prime_UTR |
TTACATATCTTGTATAGAAT+TGG | 0.314853 | 8_1:-47662376 | Msa1197370:three_prime_UTR |
AGAAAGCACTTGTTATTTAT+GGG | 0.337715 | 8_1:-47662844 | Msa1197370:CDS |
AATAAATAATTAAAATTTCT+CGG | 0.342425 | 8_1:-47662184 | Msa1197370:three_prime_UTR |
ATTACATAAAGGAGAGAATA+TGG | 0.343599 | 8_1:-47662880 | Msa1197370:CDS |
GCTCCATTTATATAAGGGTT+TGG | 0.365979 | 8_1:-47661784 | Msa1197370:three_prime_UTR |
CAAGATACTGCCATTGAACT+TGG | 0.379589 | 8_1:-47665743 | Msa1197370:CDS |
AAATAGCTCCATTTATATAA+GGG | 0.383955 | 8_1:-47661789 | Msa1197370:three_prime_UTR |
TTAGATACAGCAATTAGATA+TGG | 0.397464 | 8_1:+47661751 | Msa1197360:intron |
TAGATACAGCAATTAGATAT+GGG | 0.399266 | 8_1:+47661752 | Msa1197360:intron |
ATAAATAATTAAAATTTCTC+GGG | 0.419506 | 8_1:-47662183 | Msa1197370:three_prime_UTR |
TTCAGCTGGATGGCATGATA+AGG | 0.419758 | 8_1:-47662247 | Msa1197370:three_prime_UTR |
TAATCTGGCTTAACATAGAA+AGG | 0.421828 | 8_1:-47662094 | Msa1197370:three_prime_UTR |
ACCATAGTTACAAAAGAGTA+AGG | 0.422791 | 8_1:+47661532 | Msa1197360:intron |
CCATCATTATTTCTAAGAAT+AGG | 0.428755 | 8_1:+47661907 | Msa1197360:intron |
GATAACAAAGGATTACATAA+AGG | 0.436486 | 8_1:-47662891 | Msa1197370:CDS |
GGCTTTATATGGAGAAGGTA+AGG | 0.443686 | 8_1:-47662162 | Msa1197370:three_prime_UTR |
TCAGCTGGATGGCATGATAA+GGG | 0.445078 | 8_1:-47662246 | Msa1197370:three_prime_UTR |
GCAAGTGGTGAACTCTAAAC+AGG | 0.462787 | 8_1:+47662788 | None:intergenic |
CCTATTCTTAGAAATAATGA+TGG | 0.465042 | 8_1:-47661907 | Msa1197370:three_prime_UTR |
AAGGAGAGAATATGGCATAA+AGG | 0.466216 | 8_1:-47662872 | Msa1197370:CDS |
TACAATGATATAGGAGATTG+TGG | 0.467972 | 8_1:-47662918 | Msa1197370:intron |
AATAATGATGGGTTATTAAG+CGG | 0.473078 | 8_1:-47661895 | Msa1197370:three_prime_UTR |
TGATCTAAAATTGATGATAC+AGG | 0.475870 | 8_1:+47662308 | None:intergenic |
TAATTCATTTCCAAGTTCAA+TGG | 0.482603 | 8_1:+47665733 | None:intergenic |
AATGCTATTGAATATACAAA+TGG | 0.489437 | 8_1:-47662428 | Msa1197370:three_prime_UTR |
CACTCCTCATGTTCCGATGT+GGG | 0.492872 | 8_1:+47661665 | Msa1197360:intron |
AAACTGCTAGCAAACTATGA+AGG | 0.493697 | 8_1:-47662272 | Msa1197370:three_prime_UTR |
GCGGCAGAGGGCAGAAGGTG+TGG | 0.498337 | 8_1:+47662035 | Msa1197360:CDS |
AGAAGGCGGCAGAGGGCAGA+AGG | 0.499716 | 8_1:+47662030 | Msa1197360:CDS |
CAAAGAGGCAAGAAATTACA+TGG | 0.507736 | 8_1:-47662453 | Msa1197370:intron |
GTCCCAATCAGAAAAGTTGT+TGG | 0.511686 | 8_1:-47662351 | Msa1197370:three_prime_UTR |
GTTCACCACTTGCATGATCA+AGG | 0.514280 | 8_1:-47662778 | Msa1197370:intron |
AAGCAACTGTTTCGCTGATG+TGG | 0.519623 | 8_1:+47661814 | Msa1197360:intron |
GGTGAGAAGTGCAGATCACC+TGG | 0.524126 | 8_1:-47661978 | Msa1197370:three_prime_UTR |
GGATTGTCAGAAGGCGGCAG+AGG | 0.525146 | 8_1:+47662022 | Msa1197360:CDS |
TCTCGGGCTTTATATGGAGA+AGG | 0.541439 | 8_1:-47662167 | Msa1197370:three_prime_UTR |
CTATTCTTAGAAATAATGAT+GGG | 0.545280 | 8_1:-47661906 | Msa1197370:three_prime_UTR |
GATTGTCAGAAGGCGGCAGA+GGG | 0.550966 | 8_1:+47662023 | Msa1197360:CDS |
TGATTTGGCCATTTAAGACC+AGG | 0.558051 | 8_1:+47661960 | Msa1197360:intron |
TGATAAGGGTTCAAGTAGGA+TGG | 0.559261 | 8_1:-47662232 | Msa1197370:three_prime_UTR |
AACTGCTAGCAAACTATGAA+GGG | 0.561604 | 8_1:-47662271 | Msa1197370:three_prime_UTR |
AAACTATGAAGGGTTTCAGC+TGG | 0.563201 | 8_1:-47662261 | Msa1197370:three_prime_UTR |
TCACTCCTCATGTTCCGATG+TGG | 0.565931 | 8_1:+47661664 | Msa1197360:intron |
ATAATGATGGGTTATTAAGC+GGG | 0.567133 | 8_1:-47661894 | Msa1197370:three_prime_UTR |
TATGAAGGGTTTCAGCTGGA+TGG | 0.571906 | 8_1:-47662257 | Msa1197370:three_prime_UTR |
AGTTGAAATTACAAAATGAA+AGG | 0.573740 | 8_1:-47661717 | Msa1197370:three_prime_UTR |
TGAGACAAAGTTCAAGAGGG+TGG | 0.589004 | 8_1:-47665801 | Msa1197370:CDS |
ATAATGAGACAAAGTTCAAG+AGG | 0.589640 | 8_1:-47665805 | Msa1197370:CDS |
TGTAGAATGAAAATAATGGT+AGG | 0.594513 | 8_1:-47666519 | None:intergenic |
AGATACAGCAATTAGATATG+GGG | 0.597427 | 8_1:+47661753 | Msa1197360:intron |
GAGACAAAGTTCAAGAGGGT+GGG | 0.600020 | 8_1:-47665800 | Msa1197370:CDS |
GGAGTGATGCAGAGCAAATG+TGG | 0.605609 | 8_1:-47661648 | Msa1197370:three_prime_UTR |
AAAATGCTGTAGGGCACATG+AGG | 0.609968 | 8_1:+47661613 | Msa1197360:intron |
CATAGAAAGGCTTTATACGA+GGG | 0.610134 | 8_1:-47662081 | Msa1197370:three_prime_UTR |
AGCCTGTGTGGATTGTCAGA+AGG | 0.620100 | 8_1:+47662013 | Msa1197360:CDS |
GCTTTATATGGAGAAGGTAA+GGG | 0.623958 | 8_1:-47662161 | Msa1197370:three_prime_UTR |
ACACAGGCTGATCATCCACT+TGG | 0.630161 | 8_1:-47661999 | Msa1197370:three_prime_UTR |
AAGTCCCACATCGGAACATG+AGG | 0.634461 | 8_1:-47661669 | Msa1197370:three_prime_UTR |
CGCCTTCTGACAATCCACAC+AGG | 0.642397 | 8_1:-47662015 | Msa1197370:three_prime_UTR |
CTGTGTGGATTGTCAGAAGG+CGG | 0.647153 | 8_1:+47662016 | Msa1197360:CDS |
GATTGTGGTAAAGATAACAA+AGG | 0.647801 | 8_1:-47662903 | Msa1197370:CDS |
ACATAGAAAGGCTTTATACG+AGG | 0.656319 | 8_1:-47662082 | Msa1197370:three_prime_UTR |
TCTAAAATTGATGATACAGG+TGG | 0.658257 | 8_1:+47662311 | None:intergenic |
TAATGAGACAAAGTTCAAGA+GGG | 0.659889 | 8_1:-47665804 | Msa1197370:CDS |
TATCTTGATAGCTACTCGCA+AGG | 0.663358 | 8_1:+47665759 | None:intergenic |
GGCATGATAAGGGTTCAAGT+AGG | 0.663612 | 8_1:-47662236 | Msa1197370:three_prime_UTR |
GATTACCTTGATCATGCAAG+TGG | 0.664617 | 8_1:+47662773 | None:intergenic |
GATCTGCACTTCTCACCAAG+TGG | 0.671647 | 8_1:+47661984 | Msa1197360:CDS |
AAGTGGATGATCAGCCTGTG+TGG | 0.676233 | 8_1:+47662001 | Msa1197360:CDS |
GAGTGATGCAGAGCAAATGT+GGG | 0.703532 | 8_1:-47661647 | Msa1197370:three_prime_UTR |
AGTGTCACTAAGTCCCACAT+CGG | 0.721378 | 8_1:-47661678 | Msa1197370:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TACTTCTAATATTTTTTTTT+TGG | - | chr8_1:47661559-47661578 | Msa1197370:three_prime_UTR | 10.0% |
!!! | AGTTTAAAATTTATTTTGAA+AGG | + | chr8_1:47665473-47665492 | None:intergenic | 10.0% |
!! | ATAAATAATTAAAATTTCTC+GGG | - | chr8_1:47665839-47665858 | Msa1197370:intron | 10.0% |
!!! | AATATTTTTAATTCTTGATT+TGG | + | chr8_1:47666080-47666099 | None:intergenic | 10.0% |
!!! | TTTGTTTAAAGTTTTTAATA+GGG | + | chr8_1:47666159-47666178 | None:intergenic | 10.0% |
!!! | TTTTGTTTAAAGTTTTTAAT+AGG | + | chr8_1:47666160-47666179 | None:intergenic | 10.0% |
!!! | GAATTTTATACTTAACTAAT+TGG | - | chr8_1:47661637-47661656 | Msa1197370:three_prime_UTR | 15.0% |
!!! | ATGACTATTAAAATTTTGTA+TGG | + | chr8_1:47661873-47661892 | Msa1197360:intron | 15.0% |
!! | ATGTCATATTTATATACAAA+TGG | + | chr8_1:47661934-47661953 | Msa1197360:intron | 15.0% |
!!! | TTTTATCAATTGAGATTTTT+TGG | - | chr8_1:47662591-47662610 | Msa1197370:intron | 15.0% |
!!! | TTTTGATTTGTTTTGATATA+TGG | - | chr8_1:47662666-47662685 | Msa1197370:intron | 15.0% |
!! | TCTTAATCTATAAAAATTTG+CGG | - | chr8_1:47662899-47662918 | Msa1197370:CDS | 15.0% |
!!! | TATTATTTTTAGCTTGAATA+TGG | - | chr8_1:47663183-47663202 | Msa1197370:intron | 15.0% |
!! | ATTATTAAGAGATAAAATAG+AGG | - | chr8_1:47663381-47663400 | Msa1197370:intron | 15.0% |
!!! | ACTTAAAAAAATGAAAGTAT+TGG | + | chr8_1:47663745-47663764 | None:intergenic | 15.0% |
!! | TATAGTAAAAATTTCATTGT+AGG | - | chr8_1:47663849-47663868 | Msa1197370:intron | 15.0% |
!!! | TTATGAATAAAGTATTTAAG+TGG | - | chr8_1:47663979-47663998 | Msa1197370:intron | 15.0% |
!! | TGAAATTTAAATATGATCTA+TGG | + | chr8_1:47664737-47664756 | None:intergenic | 15.0% |
!! | TTACTACTAATAAACAATTT+GGG | + | chr8_1:47664928-47664947 | None:intergenic | 15.0% |
!! | ATTACTACTAATAAACAATT+TGG | + | chr8_1:47664929-47664948 | None:intergenic | 15.0% |
!!! | GATTACATTTTTGTTTTTTA+CGG | - | chr8_1:47665898-47665917 | Msa1197370:intron | 15.0% |
!!! | ATTACATTTTTGTTTTTTAC+GGG | - | chr8_1:47665899-47665918 | Msa1197370:intron | 15.0% |
!!! | GTGTTATTTTCAATTACTTT+TGG | - | chr8_1:47662105-47662124 | Msa1197370:three_prime_UTR | 20.0% |
!! | ACAAAATTTAGAAATACTCA+TGG | + | chr8_1:47662154-47662173 | None:intergenic | 20.0% |
!! | GAGAAAAAAACTTAATATGA+GGG | + | chr8_1:47662339-47662358 | None:intergenic | 20.0% |
!! | AGAGAAAAAAACTTAATATG+AGG | + | chr8_1:47662340-47662359 | None:intergenic | 20.0% |
!!! | TTGTTTTTGTTTTTTTGATG+TGG | - | chr8_1:47662399-47662418 | Msa1197370:three_prime_UTR | 20.0% |
!!! | TGTTTTTGTTTTTTTGATGT+GGG | - | chr8_1:47662400-47662419 | Msa1197370:three_prime_UTR | 20.0% |
!! | ATGCAAAAAAGAAAAGTAAA+AGG | + | chr8_1:47662529-47662548 | None:intergenic | 20.0% |
!! | TATTACAAAGATAAGTAAGA+TGG | - | chr8_1:47662764-47662783 | Msa1197370:intron | 20.0% |
!! | ATCGTTTAAATCATAATTTC+TGG | - | chr8_1:47662851-47662870 | Msa1197370:CDS | 20.0% |
!! | CTTAATCTATAAAAATTTGC+GGG | - | chr8_1:47662900-47662919 | Msa1197370:CDS | 20.0% |
!! | TGTTTAGATAAACAAAATAC+TGG | - | chr8_1:47663081-47663100 | Msa1197370:intron | 20.0% |
!!! | TATGGTTTTTGATTGTTTTA+TGG | - | chr8_1:47663201-47663220 | Msa1197370:intron | 20.0% |
!!! | TTAAGGTATAACATCTTTTT+TGG | + | chr8_1:47663532-47663551 | None:intergenic | 20.0% |
!! | AGAAAATGAAGATGTTAAAT+AGG | - | chr8_1:47663684-47663703 | Msa1197370:intron | 20.0% |
!! | AATTAATCAAAATCCAAGTT+AGG | + | chr8_1:47664222-47664241 | None:intergenic | 20.0% |
!!! | AGTTTAGAATCATATGTTAA+TGG | - | chr8_1:47664348-47664367 | Msa1197370:intron | 20.0% |
!!! | AAAATTTTCTATGTAACCTT+TGG | - | chr8_1:47664381-47664400 | Msa1197370:intron | 20.0% |
!! | TCACTAAAAATATACCAAAT+TGG | + | chr8_1:47664687-47664706 | None:intergenic | 20.0% |
!!! | CTGAAATTTTACAATGATAT+AGG | - | chr8_1:47665095-47665114 | Msa1197370:intron | 20.0% |
!!! | TTTTAATTTTTATGCAACCA+AGG | + | chr8_1:47665418-47665437 | None:intergenic | 20.0% |
!! | AATGCTATTGAATATACAAA+TGG | - | chr8_1:47665594-47665613 | Msa1197370:intron | 20.0% |
!! | TTACATATCTTGTATAGAAT+TGG | - | chr8_1:47665646-47665665 | Msa1197370:intron | 20.0% |
!!! | TTACATTTTTGTTTTTTACG+GGG | - | chr8_1:47665900-47665919 | Msa1197370:intron | 20.0% |
!! | CTATTCTTAGAAATAATGAT+GGG | - | chr8_1:47666116-47666135 | Msa1197370:intron | 20.0% |
!! | AAATAGCTCCATTTATATAA+GGG | - | chr8_1:47666233-47666252 | Msa1197370:intron | 20.0% |
!! | AGTTGAAATTACAAAATGAA+AGG | - | chr8_1:47666305-47666324 | Msa1197370:intron | 20.0% |
! | CTTTATGCTTGATTCAAATT+AGG | - | chr8_1:47661598-47661617 | Msa1197370:three_prime_UTR | 25.0% |
! | TCAAATTAGGTTATGTAGTT+AGG | - | chr8_1:47661611-47661630 | Msa1197370:three_prime_UTR | 25.0% |
! | CAAATTAGGTTATGTAGTTA+GGG | - | chr8_1:47661612-47661631 | Msa1197370:three_prime_UTR | 25.0% |
! | AAGTACTTCCATTAAATTGT+CGG | + | chr8_1:47662064-47662083 | Msa1197360:CDS | 25.0% |
! | TAATTCATTTCCAAGTTCAA+TGG | + | chr8_1:47662292-47662311 | None:intergenic | 25.0% |
! | ATTCCTTTGTAAATTTCAGT+TGG | - | chr8_1:47662462-47662481 | Msa1197370:intron | 25.0% |
! | TTCCTTTGTAAATTTCAGTT+GGG | - | chr8_1:47662463-47662482 | Msa1197370:intron | 25.0% |
! | AAAAGGTTTGACATGAAAAA+TGG | + | chr8_1:47662512-47662531 | None:intergenic | 25.0% |
! | TCTCTAAATTGACAAGTTTA+AGG | + | chr8_1:47663549-47663568 | None:intergenic | 25.0% |
! | TTAAACTTGTCAATTTAGAG+AGG | - | chr8_1:47663548-47663567 | Msa1197370:intron | 25.0% |
! | TATCATATGCCTTCATAATA+CGG | - | chr8_1:47663574-47663593 | Msa1197370:intron | 25.0% |
! | ATCTCATATCTAATCTTTCA+TGG | - | chr8_1:47663795-47663814 | Msa1197370:intron | 25.0% |
! | ATGAAAGGATTCATAATCTT+TGG | - | chr8_1:47664073-47664092 | Msa1197370:intron | 25.0% |
!! | TATGTAACCTTTGGTTTATT+TGG | - | chr8_1:47664390-47664409 | Msa1197370:intron | 25.0% |
!!! | AGGTAATAAAAGTACCAATT+TGG | - | chr8_1:47664670-47664689 | Msa1197370:intron | 25.0% |
! | GATAACAAAGGATTACATAA+AGG | - | chr8_1:47665131-47665150 | Msa1197370:intron | 25.0% |
! | ATTACATAAAGGAGAGAATA+TGG | - | chr8_1:47665142-47665161 | Msa1197370:intron | 25.0% |
!!! | AAGAAAGCACTTGTTATTTA+TGG | - | chr8_1:47665177-47665196 | Msa1197370:intron | 25.0% |
!!! | AGAAAGCACTTGTTATTTAT+GGG | - | chr8_1:47665178-47665197 | Msa1197370:intron | 25.0% |
! | AAAGGATCATATGATATGTT+GGG | + | chr8_1:47665284-47665303 | None:intergenic | 25.0% |
! | AAAAGGATCATATGATATGT+TGG | + | chr8_1:47665285-47665304 | None:intergenic | 25.0% |
! | AGTAAATTGAATTGGACAAA+AGG | + | chr8_1:47665302-47665321 | None:intergenic | 25.0% |
! | AGTTCTACATAATTGAAGTT+TGG | + | chr8_1:47665374-47665393 | None:intergenic | 25.0% |
!!! | TTCTAATTGTTGTGTTGTTT+TGG | - | chr8_1:47665504-47665523 | Msa1197370:intron | 25.0% |
!! | TGATCTAAAATTGATGATAC+AGG | + | chr8_1:47665717-47665736 | None:intergenic | 25.0% |
!!! | CCATCATTATTTCTAAGAAT+AGG | + | chr8_1:47666118-47666137 | None:intergenic | 25.0% |
! | CCTATTCTTAGAAATAATGA+TGG | - | chr8_1:47666115-47666134 | Msa1197370:intron | 25.0% |
!!! | AATAATGATGGGTTATTAAG+CGG | - | chr8_1:47666127-47666146 | Msa1197370:intron | 25.0% |
!! | TTAAAGTTTTTAATAGGGAG+TGG | + | chr8_1:47666154-47666173 | None:intergenic | 25.0% |
! | GAAATAGCTCCATTTATATA+AGG | - | chr8_1:47666232-47666251 | Msa1197370:intron | 25.0% |
! | TATCCAAACCCTTATATAAA+TGG | + | chr8_1:47666244-47666263 | None:intergenic | 25.0% |
! | TAGATACAGCAATTAGATAT+GGG | + | chr8_1:47666273-47666292 | None:intergenic | 25.0% |
! | TTAGATACAGCAATTAGATA+TGG | + | chr8_1:47666274-47666293 | None:intergenic | 25.0% |
! | AGAGTAATAAAAATGCTGTA+GGG | + | chr8_1:47666421-47666440 | None:intergenic | 25.0% |
! | AAGAGTAATAAAAATGCTGT+AGG | + | chr8_1:47666422-47666441 | None:intergenic | 25.0% |
TTGTAAGCTTGGAAACATAT+TGG | - | chr8_1:47661704-47661723 | Msa1197370:three_prime_UTR | 30.0% | |
TTGTATGGTACTTACAGTTT+AGG | + | chr8_1:47661858-47661877 | Msa1197360:intron | 30.0% | |
GTCAAAAAACTCTTCATGAA+TGG | + | chr8_1:47662040-47662059 | Msa1197360:CDS | 30.0% | |
AGTACTTCCATTAAATTGTC+GGG | + | chr8_1:47662063-47662082 | Msa1197360:CDS | 30.0% | |
!! | TTAATGGAAGTACTTTCATG+AGG | - | chr8_1:47662069-47662088 | Msa1197370:three_prime_UTR | 30.0% |
! | TGTTTTGTGAAACTTTTAGC+AGG | - | chr8_1:47662171-47662190 | Msa1197370:three_prime_UTR | 30.0% |
ATAATGAGACAAAGTTCAAG+AGG | - | chr8_1:47662217-47662236 | Msa1197370:three_prime_UTR | 30.0% | |
TAATGAGACAAAGTTCAAGA+GGG | - | chr8_1:47662218-47662237 | Msa1197370:three_prime_UTR | 30.0% | |
!!! | TTTTTTTGATGTGGGAGAAA+TGG | - | chr8_1:47662408-47662427 | Msa1197370:three_prime_UTR | 30.0% |
! | AAATGGTTACTTTGAACACA+AGG | + | chr8_1:47662495-47662514 | None:intergenic | 30.0% |
! | TAATTTCTGGAGACATCTTA+TGG | - | chr8_1:47662864-47662883 | Msa1197370:CDS | 30.0% |
TTACAGTGATACTGTGTATT+TGG | + | chr8_1:47663023-47663042 | None:intergenic | 30.0% | |
!! | TTGATTGTTTTATGGAGAAC+AGG | - | chr8_1:47663209-47663228 | Msa1197370:intron | 30.0% |
TAGTGCAAAACAGAGTTATA+TGG | + | chr8_1:47663301-47663320 | None:intergenic | 30.0% | |
AACTCTCAATGTAGAAAAGA+TGG | - | chr8_1:47663405-47663424 | Msa1197370:intron | 30.0% | |
!! | TCTTAGGTGATTTGGTTATT+CGG | - | chr8_1:47663438-47663457 | Msa1197370:intron | 30.0% |
ATCATATGCCTTCATAATAC+GGG | - | chr8_1:47663575-47663594 | Msa1197370:intron | 30.0% | |
TTCCATCTGCATAAATGAAT+AGG | - | chr8_1:47663599-47663618 | Msa1197370:intron | 30.0% | |
ATCCTATTCATTTATGCAGA+TGG | + | chr8_1:47663604-47663623 | None:intergenic | 30.0% | |
! | GTGGAAGTTTTCTTCTTTAT+TGG | - | chr8_1:47663998-47664017 | Msa1197370:intron | 30.0% |
AATGATCAAGAAGAGATGAA+AGG | - | chr8_1:47664058-47664077 | Msa1197370:intron | 30.0% | |
! | AGGATTCATAATCTTTGGAA+TGG | - | chr8_1:47664078-47664097 | Msa1197370:intron | 30.0% |
! | GCTTTTATACTGCACTATAA+AGG | + | chr8_1:47664495-47664514 | None:intergenic | 30.0% |
AGTGCAGTATAAAAGCTTAT+TGG | - | chr8_1:47664499-47664518 | Msa1197370:intron | 30.0% | |
TTTCAGTTTGAATCTTGTGT+AGG | - | chr8_1:47664827-47664846 | Msa1197370:intron | 30.0% | |
TTCAGTTTGAATCTTGTGTA+GGG | - | chr8_1:47664828-47664847 | Msa1197370:intron | 30.0% | |
CTAATGATTAAGTAATCAGC+AGG | + | chr8_1:47664888-47664907 | None:intergenic | 30.0% | |
GAAACACAATGCAAAACATT+TGG | - | chr8_1:47664978-47664997 | Msa1197370:intron | 30.0% | |
TACAATGATATAGGAGATTG+TGG | - | chr8_1:47665104-47665123 | Msa1197370:intron | 30.0% | |
GATTGTGGTAAAGATAACAA+AGG | - | chr8_1:47665119-47665138 | Msa1197370:intron | 30.0% | |
TCCAATTCAATTTACTGCTA+TGG | - | chr8_1:47665306-47665325 | Msa1197370:intron | 30.0% | |
ACCATAGCAGTAAATTGAAT+TGG | + | chr8_1:47665310-47665329 | None:intergenic | 30.0% | |
GTTAAACTACATTTACACCT+TGG | - | chr8_1:47665398-47665417 | Msa1197370:intron | 30.0% | |
! | AACCAACAACTTTTCTGATT+GGG | + | chr8_1:47665676-47665695 | None:intergenic | 30.0% |
! | AAACCAACAACTTTTCTGAT+TGG | + | chr8_1:47665677-47665696 | None:intergenic | 30.0% |
! | TCTAAAATTGATGATACAGG+TGG | + | chr8_1:47665714-47665733 | None:intergenic | 30.0% |
! | AAAATTTCTCGGGCTTTATA+TGG | - | chr8_1:47665849-47665868 | Msa1197370:intron | 30.0% |
!!! | ATTTTTGTTTTTTACGGGGA+AGG | - | chr8_1:47665904-47665923 | Msa1197370:intron | 30.0% |
! | TAATCTGGCTTAACATAGAA+AGG | - | chr8_1:47665928-47665947 | Msa1197370:intron | 30.0% |
!! | ATAATGATGGGTTATTAAGC+GGG | - | chr8_1:47666128-47666147 | Msa1197370:intron | 30.0% |
AGATACAGCAATTAGATATG+GGG | + | chr8_1:47666272-47666291 | None:intergenic | 30.0% | |
! | TCCTTACTCTTTTGTAACTA+TGG | - | chr8_1:47666489-47666508 | Msa1197370:intron | 30.0% |
ACCATAGTTACAAAAGAGTA+AGG | + | chr8_1:47666493-47666512 | None:intergenic | 30.0% | |
!! | TGAACCTCTAGGATATATCT+GGG | - | chr8_1:47661664-47661683 | Msa1197370:three_prime_UTR | 35.0% |
GAATGACACAATGGACAAAA+TGG | + | chr8_1:47661778-47661797 | Msa1197360:intron | 35.0% | |
ACACATCATGAATGACACAA+TGG | + | chr8_1:47661787-47661806 | Msa1197360:intron | 35.0% | |
TCTACCAAAACAATCTGATC+TGG | + | chr8_1:47662009-47662028 | Msa1197360:CDS | 35.0% | |
! | TTTTGACCCCGACAATTTAA+TGG | - | chr8_1:47662053-47662072 | Msa1197370:three_prime_UTR | 35.0% |
GTACTTCCATTAAATTGTCG+GGG | + | chr8_1:47662062-47662081 | Msa1197360:CDS | 35.0% | |
CACCCAACTGAAATTTACAA+AGG | + | chr8_1:47662468-47662487 | None:intergenic | 35.0% | |
! | TGAGAAACTGTCAAAGTGTT+TGG | - | chr8_1:47662983-47663002 | Msa1197370:intron | 35.0% |
AATGAGAGAGAACTCAAAAG+AGG | + | chr8_1:47663111-47663130 | None:intergenic | 35.0% | |
!! | AGATGGTAGAGTATTGTCTT+AGG | - | chr8_1:47663422-47663441 | Msa1197370:intron | 35.0% |
! | GAGTATTGTCTTAGGTGATT+TGG | - | chr8_1:47663430-47663449 | Msa1197370:intron | 35.0% |
!! | CTTAGGTGATTTGGTTATTC+GGG | - | chr8_1:47663439-47663458 | Msa1197370:intron | 35.0% |
!! | TTAGGTGATTTGGTTATTCG+GGG | - | chr8_1:47663440-47663459 | Msa1197370:intron | 35.0% |
AGATACTGTTAACTCTCTCT+TGG | + | chr8_1:47663507-47663526 | None:intergenic | 35.0% | |
AGAAAGAGCAAGTCATTTCA+TGG | - | chr8_1:47663768-47663787 | Msa1197370:intron | 35.0% | |
TTGACCACAAATGTCATAGT+TGG | - | chr8_1:47664111-47664130 | Msa1197370:intron | 35.0% | |
TGACCACAAATGTCATAGTT+GGG | - | chr8_1:47664112-47664131 | Msa1197370:intron | 35.0% | |
ATACCCAACTATGACATTTG+TGG | + | chr8_1:47664118-47664137 | None:intergenic | 35.0% | |
ATCAAAATCCAAGTTAGGCA+AGG | + | chr8_1:47664217-47664236 | None:intergenic | 35.0% | |
GCATAGAGATAAAAGACATC+AGG | + | chr8_1:47664419-47664438 | None:intergenic | 35.0% | |
CTATAAAGGACTTTGTAGGA+AGG | + | chr8_1:47664481-47664500 | None:intergenic | 35.0% | |
TGCACTATAAAGGACTTTGT+AGG | + | chr8_1:47664485-47664504 | None:intergenic | 35.0% | |
TAAACTGCATAACTGACATG+AGG | - | chr8_1:47664650-47664669 | Msa1197370:intron | 35.0% | |
! | AATGTGAGTATTGTGCGTTA+GGG | + | chr8_1:47665027-47665046 | None:intergenic | 35.0% |
! | AAATGTGAGTATTGTGCGTT+AGG | + | chr8_1:47665028-47665047 | None:intergenic | 35.0% |
!! | TAAGAAGGCACTTCTAAAGA+GGG | + | chr8_1:47665064-47665083 | None:intergenic | 35.0% |
TCAGCATTGTATCAGTAAGA+AGG | + | chr8_1:47665079-47665098 | None:intergenic | 35.0% | |
AAGGAGAGAATATGGCATAA+AGG | - | chr8_1:47665150-47665169 | Msa1197370:intron | 35.0% | |
AGAGCTACTCATCAAATTTC+AGG | + | chr8_1:47665213-47665232 | None:intergenic | 35.0% | |
CAAAGAGGCAAGAAATTACA+TGG | - | chr8_1:47665569-47665588 | Msa1197370:intron | 35.0% | |
AAACTGCTAGCAAACTATGA+AGG | - | chr8_1:47665750-47665769 | Msa1197370:CDS | 35.0% | |
AACTGCTAGCAAACTATGAA+GGG | - | chr8_1:47665751-47665770 | Msa1197370:CDS | 35.0% | |
GCTTTATATGGAGAAGGTAA+GGG | - | chr8_1:47665861-47665880 | Msa1197370:intron | 35.0% | |
! | ACATAGAAAGGCTTTATACG+AGG | - | chr8_1:47665940-47665959 | Msa1197370:intron | 35.0% |
! | CATAGAAAGGCTTTATACGA+GGG | - | chr8_1:47665941-47665960 | Msa1197370:intron | 35.0% |
GCTCCATTTATATAAGGGTT+TGG | - | chr8_1:47666238-47666257 | Msa1197370:intron | 35.0% | |
!! | TAATTGGCTTGTGAACCTCT+AGG | - | chr8_1:47661653-47661672 | Msa1197370:three_prime_UTR | 40.0% |
!! | GTGAACCTCTAGGATATATC+TGG | - | chr8_1:47661663-47661682 | Msa1197370:three_prime_UTR | 40.0% |
TCATTCATGATGTGTGTGTG+TGG | - | chr8_1:47661792-47661811 | Msa1197370:three_prime_UTR | 40.0% | |
AAACAATCTGATCTGGCATG+TGG | + | chr8_1:47662002-47662021 | Msa1197360:CDS | 40.0% | |
! | CATGCCAGATCAGATTGTTT+TGG | - | chr8_1:47662002-47662021 | Msa1197370:three_prime_UTR | 40.0% |
! | TATCTTGATAGCTACTCGCA+AGG | + | chr8_1:47662266-47662285 | None:intergenic | 40.0% |
CAAGATACTGCCATTGAACT+TGG | - | chr8_1:47662279-47662298 | Msa1197370:three_prime_UTR | 40.0% | |
! | ACTGTACTTTGTTTCGCTCT+TGG | - | chr8_1:47662727-47662746 | Msa1197370:intron | 40.0% |
! | AAAGTGTTTAGATAGCAGCC+AGG | + | chr8_1:47662964-47662983 | None:intergenic | 40.0% |
! | ACTGTCAAAGTGTTTGGTGA+TGG | - | chr8_1:47662989-47663008 | Msa1197370:intron | 40.0% |
! | CTGTCAAAGTGTTTGGTGAT+GGG | - | chr8_1:47662990-47663009 | Msa1197370:intron | 40.0% |
!! | TAGGTGATTTGGTTATTCGG+GGG | - | chr8_1:47663441-47663460 | Msa1197370:intron | 40.0% |
TAATCTTTCATGGTACCTGC+AGG | - | chr8_1:47663805-47663824 | Msa1197370:intron | 40.0% | |
TGTTCAAACCTTGCCTAACT+TGG | - | chr8_1:47664206-47664225 | Msa1197370:intron | 40.0% | |
!!! | GCTCTAAGATTTTGCAAGCT+TGG | - | chr8_1:47664303-47664322 | Msa1197370:intron | 40.0% |
CAGGCATCCAAATAAACCAA+AGG | + | chr8_1:47664400-47664419 | None:intergenic | 40.0% | |
TAGTTGAGGGAGAACTTGAA+AGG | - | chr8_1:47664540-47664559 | Msa1197370:intron | 40.0% | |
GGGAGAACTTGAAAGGAAAA+TGG | - | chr8_1:47664547-47664566 | Msa1197370:intron | 40.0% | |
TAGTTGAGGGAGAACTTGAA+AGG | - | chr8_1:47664540-47664559 | Msa1197370:intron | 40.0% | |
GGGAGAACTTGAAAGGAAAA+TGG | - | chr8_1:47664547-47664566 | Msa1197370:intron | 40.0% | |
TATGCAGTTTAGCACTCTCA+TGG | + | chr8_1:47664641-47664660 | None:intergenic | 40.0% | |
TTGAATCTTGTGTAGGGACT+TGG | - | chr8_1:47664834-47664853 | Msa1197370:intron | 40.0% | |
TGAATCTTGTGTAGGGACTT+GGG | - | chr8_1:47664835-47664854 | Msa1197370:intron | 40.0% | |
AGTAATCAGCAGGATTGAGT+GGG | + | chr8_1:47664878-47664897 | None:intergenic | 40.0% | |
AAGTAATCAGCAGGATTGAG+TGG | + | chr8_1:47664879-47664898 | None:intergenic | 40.0% | |
!! | GTAAGAAGGCACTTCTAAAG+AGG | + | chr8_1:47665065-47665084 | None:intergenic | 40.0% |
GATTACCTTGATCATGCAAG+TGG | + | chr8_1:47665252-47665271 | None:intergenic | 40.0% | |
! | GAAGTTTGGAAGCATGTTTG+TGG | + | chr8_1:47665360-47665379 | None:intergenic | 40.0% |
!! | GTAACTTCAACTTGCTGCTA+TGG | - | chr8_1:47665528-47665547 | Msa1197370:intron | 40.0% |
GTCCCAATCAGAAAAGTTGT+TGG | - | chr8_1:47665671-47665690 | Msa1197370:intron | 40.0% | |
AAACTATGAAGGGTTTCAGC+TGG | - | chr8_1:47665761-47665780 | Msa1197370:CDS | 40.0% | |
TGATAAGGGTTCAAGTAGGA+TGG | - | chr8_1:47665790-47665809 | Msa1197370:CDS | 40.0% | |
! | GGCTTTATATGGAGAAGGTA+AGG | - | chr8_1:47665860-47665879 | Msa1197370:intron | 40.0% |
! | TTTTACGGGGAAGGTTAATC+TGG | - | chr8_1:47665913-47665932 | Msa1197370:intron | 40.0% |
! | TGATTTGGCCATTTAAGACC+AGG | + | chr8_1:47666065-47666084 | None:intergenic | 40.0% |
CTCACCCAGATATATCCTAG+AGG | + | chr8_1:47661671-47661690 | Msa1197360:intron | 45.0% | |
CTAGGATATATCTGGGTGAG+TGG | - | chr8_1:47661671-47661690 | Msa1197370:three_prime_UTR | 45.0% | |
GTTTCCAAGCTTACAAACCC+TGG | + | chr8_1:47661700-47661719 | Msa1197360:intron | 45.0% | |
ATCTTCCTAGCAAAGCGAGA+TGG | + | chr8_1:47661753-47661772 | Msa1197360:intron | 45.0% | |
TGGCATGTGGTAATCAGATC+TGG | + | chr8_1:47661989-47662008 | Msa1197360:CDS | 45.0% | |
TGAGACAAAGTTCAAGAGGG+TGG | - | chr8_1:47662221-47662240 | Msa1197370:three_prime_UTR | 45.0% | |
GAGACAAAGTTCAAGAGGGT+GGG | - | chr8_1:47662222-47662241 | Msa1197370:three_prime_UTR | 45.0% | |
GATGGAAGCCCGTATTATGA+AGG | + | chr8_1:47663586-47663605 | None:intergenic | 45.0% | |
CAATTGCTTGATTGTCCTGC+AGG | + | chr8_1:47663823-47663842 | None:intergenic | 45.0% | |
CATGCACTGCTTGTAGTTGA+GGG | - | chr8_1:47664527-47664546 | Msa1197370:intron | 45.0% | |
!! | CATGAGAGTGCTGTAGTTGA+GGG | - | chr8_1:47664583-47664602 | Msa1197370:intron | 45.0% |
GCAAGTGGTGAACTCTAAAC+AGG | + | chr8_1:47665237-47665256 | None:intergenic | 45.0% | |
GTTCACCACTTGCATGATCA+AGG | - | chr8_1:47665244-47665263 | Msa1197370:intron | 45.0% | |
CTTGCTGCTATGGAATCCTA+CGG | - | chr8_1:47665538-47665557 | Msa1197370:intron | 45.0% | |
TGCTATGGAATCCTACGGAT+TGG | - | chr8_1:47665543-47665562 | Msa1197370:intron | 45.0% | |
TATGAAGGGTTTCAGCTGGA+TGG | - | chr8_1:47665765-47665784 | Msa1197370:CDS | 45.0% | |
TTCAGCTGGATGGCATGATA+AGG | - | chr8_1:47665775-47665794 | Msa1197370:CDS | 45.0% | |
TCAGCTGGATGGCATGATAA+GGG | - | chr8_1:47665776-47665795 | Msa1197370:CDS | 45.0% | |
GGCATGATAAGGGTTCAAGT+AGG | - | chr8_1:47665786-47665805 | Msa1197370:CDS | 45.0% | |
! | TCTCGGGCTTTATATGGAGA+AGG | - | chr8_1:47665855-47665874 | Msa1197370:intron | 45.0% |
!! | GCAGATCACCTGGTCTTAAA+TGG | - | chr8_1:47666054-47666073 | Msa1197370:intron | 45.0% |
! | TTCGCTGATGTGGCATTTTG+TGG | + | chr8_1:47666201-47666220 | None:intergenic | 45.0% |
AAGCAACTGTTTCGCTGATG+TGG | + | chr8_1:47666211-47666230 | None:intergenic | 45.0% | |
! | AGTGTCACTAAGTCCCACAT+CGG | - | chr8_1:47666344-47666363 | Msa1197370:intron | 45.0% |
GAGTGATGCAGAGCAAATGT+GGG | - | chr8_1:47666375-47666394 | Msa1197370:intron | 45.0% | |
AAAATGCTGTAGGGCACATG+AGG | + | chr8_1:47666412-47666431 | None:intergenic | 45.0% | |
!! | AATAAATAATTAAAATTTCT+CGG | - | chr8_1:47665838-47665857 | Msa1197370:intron | 5.0% |
!! | AAGAATTAAAAATATTAATT+AGG | - | chr8_1:47666084-47666103 | Msa1197370:intron | 5.0% |
GCTTCCAGGGTTTGTAAGCT+TGG | - | chr8_1:47661693-47661712 | Msa1197370:three_prime_UTR | 50.0% | |
TCATGCCATCTCGCTTTGCT+AGG | - | chr8_1:47661745-47661764 | Msa1197370:three_prime_UTR | 50.0% | |
TCATGATGTGTGTGTGTGGC+AGG | - | chr8_1:47661796-47661815 | Msa1197370:three_prime_UTR | 50.0% | |
!! | CAAGAGGGTGGGTGTTTTTG+TGG | - | chr8_1:47662233-47662252 | Msa1197370:three_prime_UTR | 50.0% |
TGCTTGCTTACATGCTTGCC+TGG | - | chr8_1:47662943-47662962 | Msa1197370:intron | 50.0% | |
!! | GTGATTTGGTTATTCGGGGG+AGG | - | chr8_1:47663444-47663463 | Msa1197370:intron | 50.0% |
ATTCGGGGGAGGAAACTTGT+AGG | - | chr8_1:47663455-47663474 | Msa1197370:intron | 50.0% | |
CCTCAACTACAAGCAGTGCA+TGG | + | chr8_1:47664529-47664548 | None:intergenic | 50.0% | |
CCATGCACTGCTTGTAGTTG+AGG | - | chr8_1:47664526-47664545 | Msa1197370:intron | 50.0% | |
CCTCAACTACAGCACTCTCA+TGG | + | chr8_1:47664585-47664604 | None:intergenic | 50.0% | |
!! | CCATGAGAGTGCTGTAGTTG+AGG | - | chr8_1:47664582-47664601 | Msa1197370:intron | 50.0% |
CCTCTTTGTCTCCAATCCGT+AGG | + | chr8_1:47665557-47665576 | None:intergenic | 50.0% | |
!! | CCTACGGATTGGAGACAAAG+AGG | - | chr8_1:47665554-47665573 | Msa1197370:intron | 50.0% |
AAGTGGATGATCAGCCTGTG+TGG | + | chr8_1:47666024-47666043 | None:intergenic | 50.0% | |
ACACAGGCTGATCATCCACT+TGG | - | chr8_1:47666023-47666042 | Msa1197370:intron | 50.0% | |
GATCTGCACTTCTCACCAAG+TGG | + | chr8_1:47666041-47666060 | None:intergenic | 50.0% | |
AAGTCCCACATCGGAACATG+AGG | - | chr8_1:47666353-47666372 | Msa1197370:intron | 50.0% | |
CACTCCTCATGTTCCGATGT+GGG | + | chr8_1:47666360-47666379 | None:intergenic | 50.0% | |
TCACTCCTCATGTTCCGATG+TGG | + | chr8_1:47666361-47666380 | None:intergenic | 50.0% | |
GGAGTGATGCAGAGCAAATG+TGG | - | chr8_1:47666374-47666393 | Msa1197370:intron | 50.0% | |
TATCTGGGTGAGTGGCTTCC+AGG | - | chr8_1:47661679-47661698 | Msa1197370:three_prime_UTR | 55.0% | |
ATCTGGGTGAGTGGCTTCCA+GGG | - | chr8_1:47661680-47661699 | Msa1197370:three_prime_UTR | 55.0% | |
TGATGTGTGTGTGTGGCAGG+AGG | - | chr8_1:47661799-47661818 | Msa1197370:three_prime_UTR | 55.0% | |
GTGTGTGTGGCAGGAGGATA+TGG | - | chr8_1:47661805-47661824 | Msa1197370:three_prime_UTR | 55.0% | |
! | GGTGAGAAGTGCAGATCACC+TGG | - | chr8_1:47666044-47666063 | Msa1197370:intron | 55.0% |
AGAAGGCGGCAGAGGGCAGA+AGG | + | chr8_1:47665995-47666014 | None:intergenic | 65.0% | |
GCGGCAGAGGGCAGAAGGTG+TGG | + | chr8_1:47665990-47666009 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_1 | gene | 47661518 | 47666526 | 47661518 | ID=Msa1197370;Name=Msa1197370 |
chr8_1 | mRNA | 47661518 | 47666526 | 47661518 | ID=Msa1197370-mRNA-1;Parent=Msa1197370;Name=Msa1197370-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.33|0.75|0.75|0|0|4|997|76 |
chr8_1 | exon | 47661518 | 47662470 | 47661518 | ID=Msa1197370-mRNA-1:exon:15144;Parent=Msa1197370-mRNA-1 |
chr8_1 | exon | 47662779 | 47662927 | 47662779 | ID=Msa1197370-mRNA-1:exon:15143;Parent=Msa1197370-mRNA-1 |
chr8_1 | exon | 47665733 | 47665851 | 47665733 | ID=Msa1197370-mRNA-1:exon:15142;Parent=Msa1197370-mRNA-1 |
chr8_1 | exon | 47666520 | 47666526 | 47666520 | ID=Msa1197370-mRNA-1:exon:15141;Parent=Msa1197370-mRNA-1 |
chr8_1 | CDS | 47666520 | 47666526 | 47666520 | ID=Msa1197370-mRNA-1:cds;Parent=Msa1197370-mRNA-1 |
chr8_1 | CDS | 47665733 | 47665851 | 47665733 | ID=Msa1197370-mRNA-1:cds;Parent=Msa1197370-mRNA-1 |
chr8_1 | CDS | 47662823 | 47662927 | 47662823 | ID=Msa1197370-mRNA-1:cds;Parent=Msa1197370-mRNA-1 |
chr8_1 | three_prime_UTR | 47662779 | 47662822 | 47662779 | ID=Msa1197370-mRNA-1:three_prime_utr;Parent=Msa1197370-mRNA-1 |
chr8_1 | three_prime_UTR | 47661518 | 47662470 | 47661518 | ID=Msa1197370-mRNA-1:three_prime_utr;Parent=Msa1197370-mRNA-1 |
Gene Sequence |
Protein sequence |