AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 77 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAAGCACTTGTTATTTA+TGG 0.131236 8_1:-47662845 Msa1197370:CDS
GAAATAGCTCCATTTATATA+AGG 0.225284 8_1:-47661790 Msa1197370:three_prime_UTR
TATCCAAACCCTTATATAAA+TGG 0.243709 8_1:+47661781 Msa1197360:intron
AAAATTTCTCGGGCTTTATA+TGG 0.250180 8_1:-47662173 Msa1197370:three_prime_UTR
AGAGCTACTCATCAAATTTC+AGG 0.270993 8_1:+47662812 None:intergenic
GCAGATCACCTGGTCTTAAA+TGG 0.311454 8_1:-47661968 Msa1197370:three_prime_UTR
TTACATATCTTGTATAGAAT+TGG 0.314853 8_1:-47662376 Msa1197370:three_prime_UTR
AGAAAGCACTTGTTATTTAT+GGG 0.337715 8_1:-47662844 Msa1197370:CDS
AATAAATAATTAAAATTTCT+CGG 0.342425 8_1:-47662184 Msa1197370:three_prime_UTR
ATTACATAAAGGAGAGAATA+TGG 0.343599 8_1:-47662880 Msa1197370:CDS
GCTCCATTTATATAAGGGTT+TGG 0.365979 8_1:-47661784 Msa1197370:three_prime_UTR
CAAGATACTGCCATTGAACT+TGG 0.379589 8_1:-47665743 Msa1197370:CDS
AAATAGCTCCATTTATATAA+GGG 0.383955 8_1:-47661789 Msa1197370:three_prime_UTR
TTAGATACAGCAATTAGATA+TGG 0.397464 8_1:+47661751 Msa1197360:intron
TAGATACAGCAATTAGATAT+GGG 0.399266 8_1:+47661752 Msa1197360:intron
ATAAATAATTAAAATTTCTC+GGG 0.419506 8_1:-47662183 Msa1197370:three_prime_UTR
TTCAGCTGGATGGCATGATA+AGG 0.419758 8_1:-47662247 Msa1197370:three_prime_UTR
TAATCTGGCTTAACATAGAA+AGG 0.421828 8_1:-47662094 Msa1197370:three_prime_UTR
ACCATAGTTACAAAAGAGTA+AGG 0.422791 8_1:+47661532 Msa1197360:intron
CCATCATTATTTCTAAGAAT+AGG 0.428755 8_1:+47661907 Msa1197360:intron
GATAACAAAGGATTACATAA+AGG 0.436486 8_1:-47662891 Msa1197370:CDS
GGCTTTATATGGAGAAGGTA+AGG 0.443686 8_1:-47662162 Msa1197370:three_prime_UTR
TCAGCTGGATGGCATGATAA+GGG 0.445078 8_1:-47662246 Msa1197370:three_prime_UTR
GCAAGTGGTGAACTCTAAAC+AGG 0.462787 8_1:+47662788 None:intergenic
CCTATTCTTAGAAATAATGA+TGG 0.465042 8_1:-47661907 Msa1197370:three_prime_UTR
AAGGAGAGAATATGGCATAA+AGG 0.466216 8_1:-47662872 Msa1197370:CDS
TACAATGATATAGGAGATTG+TGG 0.467972 8_1:-47662918 Msa1197370:intron
AATAATGATGGGTTATTAAG+CGG 0.473078 8_1:-47661895 Msa1197370:three_prime_UTR
TGATCTAAAATTGATGATAC+AGG 0.475870 8_1:+47662308 None:intergenic
TAATTCATTTCCAAGTTCAA+TGG 0.482603 8_1:+47665733 None:intergenic
AATGCTATTGAATATACAAA+TGG 0.489437 8_1:-47662428 Msa1197370:three_prime_UTR
CACTCCTCATGTTCCGATGT+GGG 0.492872 8_1:+47661665 Msa1197360:intron
AAACTGCTAGCAAACTATGA+AGG 0.493697 8_1:-47662272 Msa1197370:three_prime_UTR
GCGGCAGAGGGCAGAAGGTG+TGG 0.498337 8_1:+47662035 Msa1197360:CDS
AGAAGGCGGCAGAGGGCAGA+AGG 0.499716 8_1:+47662030 Msa1197360:CDS
CAAAGAGGCAAGAAATTACA+TGG 0.507736 8_1:-47662453 Msa1197370:intron
GTCCCAATCAGAAAAGTTGT+TGG 0.511686 8_1:-47662351 Msa1197370:three_prime_UTR
GTTCACCACTTGCATGATCA+AGG 0.514280 8_1:-47662778 Msa1197370:intron
AAGCAACTGTTTCGCTGATG+TGG 0.519623 8_1:+47661814 Msa1197360:intron
GGTGAGAAGTGCAGATCACC+TGG 0.524126 8_1:-47661978 Msa1197370:three_prime_UTR
GGATTGTCAGAAGGCGGCAG+AGG 0.525146 8_1:+47662022 Msa1197360:CDS
TCTCGGGCTTTATATGGAGA+AGG 0.541439 8_1:-47662167 Msa1197370:three_prime_UTR
CTATTCTTAGAAATAATGAT+GGG 0.545280 8_1:-47661906 Msa1197370:three_prime_UTR
GATTGTCAGAAGGCGGCAGA+GGG 0.550966 8_1:+47662023 Msa1197360:CDS
TGATTTGGCCATTTAAGACC+AGG 0.558051 8_1:+47661960 Msa1197360:intron
TGATAAGGGTTCAAGTAGGA+TGG 0.559261 8_1:-47662232 Msa1197370:three_prime_UTR
AACTGCTAGCAAACTATGAA+GGG 0.561604 8_1:-47662271 Msa1197370:three_prime_UTR
AAACTATGAAGGGTTTCAGC+TGG 0.563201 8_1:-47662261 Msa1197370:three_prime_UTR
TCACTCCTCATGTTCCGATG+TGG 0.565931 8_1:+47661664 Msa1197360:intron
ATAATGATGGGTTATTAAGC+GGG 0.567133 8_1:-47661894 Msa1197370:three_prime_UTR
TATGAAGGGTTTCAGCTGGA+TGG 0.571906 8_1:-47662257 Msa1197370:three_prime_UTR
AGTTGAAATTACAAAATGAA+AGG 0.573740 8_1:-47661717 Msa1197370:three_prime_UTR
TGAGACAAAGTTCAAGAGGG+TGG 0.589004 8_1:-47665801 Msa1197370:CDS
ATAATGAGACAAAGTTCAAG+AGG 0.589640 8_1:-47665805 Msa1197370:CDS
TGTAGAATGAAAATAATGGT+AGG 0.594513 8_1:-47666519 None:intergenic
AGATACAGCAATTAGATATG+GGG 0.597427 8_1:+47661753 Msa1197360:intron
GAGACAAAGTTCAAGAGGGT+GGG 0.600020 8_1:-47665800 Msa1197370:CDS
GGAGTGATGCAGAGCAAATG+TGG 0.605609 8_1:-47661648 Msa1197370:three_prime_UTR
AAAATGCTGTAGGGCACATG+AGG 0.609968 8_1:+47661613 Msa1197360:intron
CATAGAAAGGCTTTATACGA+GGG 0.610134 8_1:-47662081 Msa1197370:three_prime_UTR
AGCCTGTGTGGATTGTCAGA+AGG 0.620100 8_1:+47662013 Msa1197360:CDS
GCTTTATATGGAGAAGGTAA+GGG 0.623958 8_1:-47662161 Msa1197370:three_prime_UTR
ACACAGGCTGATCATCCACT+TGG 0.630161 8_1:-47661999 Msa1197370:three_prime_UTR
AAGTCCCACATCGGAACATG+AGG 0.634461 8_1:-47661669 Msa1197370:three_prime_UTR
CGCCTTCTGACAATCCACAC+AGG 0.642397 8_1:-47662015 Msa1197370:three_prime_UTR
CTGTGTGGATTGTCAGAAGG+CGG 0.647153 8_1:+47662016 Msa1197360:CDS
GATTGTGGTAAAGATAACAA+AGG 0.647801 8_1:-47662903 Msa1197370:CDS
ACATAGAAAGGCTTTATACG+AGG 0.656319 8_1:-47662082 Msa1197370:three_prime_UTR
TCTAAAATTGATGATACAGG+TGG 0.658257 8_1:+47662311 None:intergenic
TAATGAGACAAAGTTCAAGA+GGG 0.659889 8_1:-47665804 Msa1197370:CDS
TATCTTGATAGCTACTCGCA+AGG 0.663358 8_1:+47665759 None:intergenic
GGCATGATAAGGGTTCAAGT+AGG 0.663612 8_1:-47662236 Msa1197370:three_prime_UTR
GATTACCTTGATCATGCAAG+TGG 0.664617 8_1:+47662773 None:intergenic
GATCTGCACTTCTCACCAAG+TGG 0.671647 8_1:+47661984 Msa1197360:CDS
AAGTGGATGATCAGCCTGTG+TGG 0.676233 8_1:+47662001 Msa1197360:CDS
GAGTGATGCAGAGCAAATGT+GGG 0.703532 8_1:-47661647 Msa1197370:three_prime_UTR
AGTGTCACTAAGTCCCACAT+CGG 0.721378 8_1:-47661678 Msa1197370:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TACTTCTAATATTTTTTTTT+TGG - chr8_1:47661559-47661578 Msa1197370:three_prime_UTR 10.0%
!!! AGTTTAAAATTTATTTTGAA+AGG + chr8_1:47665473-47665492 None:intergenic 10.0%
!! ATAAATAATTAAAATTTCTC+GGG - chr8_1:47665839-47665858 Msa1197370:intron 10.0%
!!! AATATTTTTAATTCTTGATT+TGG + chr8_1:47666080-47666099 None:intergenic 10.0%
!!! TTTGTTTAAAGTTTTTAATA+GGG + chr8_1:47666159-47666178 None:intergenic 10.0%
!!! TTTTGTTTAAAGTTTTTAAT+AGG + chr8_1:47666160-47666179 None:intergenic 10.0%
!!! GAATTTTATACTTAACTAAT+TGG - chr8_1:47661637-47661656 Msa1197370:three_prime_UTR 15.0%
!!! ATGACTATTAAAATTTTGTA+TGG + chr8_1:47661873-47661892 Msa1197360:intron 15.0%
!! ATGTCATATTTATATACAAA+TGG + chr8_1:47661934-47661953 Msa1197360:intron 15.0%
!!! TTTTATCAATTGAGATTTTT+TGG - chr8_1:47662591-47662610 Msa1197370:intron 15.0%
!!! TTTTGATTTGTTTTGATATA+TGG - chr8_1:47662666-47662685 Msa1197370:intron 15.0%
!! TCTTAATCTATAAAAATTTG+CGG - chr8_1:47662899-47662918 Msa1197370:CDS 15.0%
!!! TATTATTTTTAGCTTGAATA+TGG - chr8_1:47663183-47663202 Msa1197370:intron 15.0%
!! ATTATTAAGAGATAAAATAG+AGG - chr8_1:47663381-47663400 Msa1197370:intron 15.0%
!!! ACTTAAAAAAATGAAAGTAT+TGG + chr8_1:47663745-47663764 None:intergenic 15.0%
!! TATAGTAAAAATTTCATTGT+AGG - chr8_1:47663849-47663868 Msa1197370:intron 15.0%
!!! TTATGAATAAAGTATTTAAG+TGG - chr8_1:47663979-47663998 Msa1197370:intron 15.0%
!! TGAAATTTAAATATGATCTA+TGG + chr8_1:47664737-47664756 None:intergenic 15.0%
!! TTACTACTAATAAACAATTT+GGG + chr8_1:47664928-47664947 None:intergenic 15.0%
!! ATTACTACTAATAAACAATT+TGG + chr8_1:47664929-47664948 None:intergenic 15.0%
!!! GATTACATTTTTGTTTTTTA+CGG - chr8_1:47665898-47665917 Msa1197370:intron 15.0%
!!! ATTACATTTTTGTTTTTTAC+GGG - chr8_1:47665899-47665918 Msa1197370:intron 15.0%
!!! GTGTTATTTTCAATTACTTT+TGG - chr8_1:47662105-47662124 Msa1197370:three_prime_UTR 20.0%
!! ACAAAATTTAGAAATACTCA+TGG + chr8_1:47662154-47662173 None:intergenic 20.0%
!! GAGAAAAAAACTTAATATGA+GGG + chr8_1:47662339-47662358 None:intergenic 20.0%
!! AGAGAAAAAAACTTAATATG+AGG + chr8_1:47662340-47662359 None:intergenic 20.0%
!!! TTGTTTTTGTTTTTTTGATG+TGG - chr8_1:47662399-47662418 Msa1197370:three_prime_UTR 20.0%
!!! TGTTTTTGTTTTTTTGATGT+GGG - chr8_1:47662400-47662419 Msa1197370:three_prime_UTR 20.0%
!! ATGCAAAAAAGAAAAGTAAA+AGG + chr8_1:47662529-47662548 None:intergenic 20.0%
!! TATTACAAAGATAAGTAAGA+TGG - chr8_1:47662764-47662783 Msa1197370:intron 20.0%
!! ATCGTTTAAATCATAATTTC+TGG - chr8_1:47662851-47662870 Msa1197370:CDS 20.0%
!! CTTAATCTATAAAAATTTGC+GGG - chr8_1:47662900-47662919 Msa1197370:CDS 20.0%
!! TGTTTAGATAAACAAAATAC+TGG - chr8_1:47663081-47663100 Msa1197370:intron 20.0%
!!! TATGGTTTTTGATTGTTTTA+TGG - chr8_1:47663201-47663220 Msa1197370:intron 20.0%
!!! TTAAGGTATAACATCTTTTT+TGG + chr8_1:47663532-47663551 None:intergenic 20.0%
!! AGAAAATGAAGATGTTAAAT+AGG - chr8_1:47663684-47663703 Msa1197370:intron 20.0%
!! AATTAATCAAAATCCAAGTT+AGG + chr8_1:47664222-47664241 None:intergenic 20.0%
!!! AGTTTAGAATCATATGTTAA+TGG - chr8_1:47664348-47664367 Msa1197370:intron 20.0%
!!! AAAATTTTCTATGTAACCTT+TGG - chr8_1:47664381-47664400 Msa1197370:intron 20.0%
!! TCACTAAAAATATACCAAAT+TGG + chr8_1:47664687-47664706 None:intergenic 20.0%
!!! CTGAAATTTTACAATGATAT+AGG - chr8_1:47665095-47665114 Msa1197370:intron 20.0%
!!! TTTTAATTTTTATGCAACCA+AGG + chr8_1:47665418-47665437 None:intergenic 20.0%
!! AATGCTATTGAATATACAAA+TGG - chr8_1:47665594-47665613 Msa1197370:intron 20.0%
!! TTACATATCTTGTATAGAAT+TGG - chr8_1:47665646-47665665 Msa1197370:intron 20.0%
!!! TTACATTTTTGTTTTTTACG+GGG - chr8_1:47665900-47665919 Msa1197370:intron 20.0%
!! CTATTCTTAGAAATAATGAT+GGG - chr8_1:47666116-47666135 Msa1197370:intron 20.0%
!! AAATAGCTCCATTTATATAA+GGG - chr8_1:47666233-47666252 Msa1197370:intron 20.0%
!! AGTTGAAATTACAAAATGAA+AGG - chr8_1:47666305-47666324 Msa1197370:intron 20.0%
! CTTTATGCTTGATTCAAATT+AGG - chr8_1:47661598-47661617 Msa1197370:three_prime_UTR 25.0%
! TCAAATTAGGTTATGTAGTT+AGG - chr8_1:47661611-47661630 Msa1197370:three_prime_UTR 25.0%
! CAAATTAGGTTATGTAGTTA+GGG - chr8_1:47661612-47661631 Msa1197370:three_prime_UTR 25.0%
! AAGTACTTCCATTAAATTGT+CGG + chr8_1:47662064-47662083 Msa1197360:CDS 25.0%
! TAATTCATTTCCAAGTTCAA+TGG + chr8_1:47662292-47662311 None:intergenic 25.0%
! ATTCCTTTGTAAATTTCAGT+TGG - chr8_1:47662462-47662481 Msa1197370:intron 25.0%
! TTCCTTTGTAAATTTCAGTT+GGG - chr8_1:47662463-47662482 Msa1197370:intron 25.0%
! AAAAGGTTTGACATGAAAAA+TGG + chr8_1:47662512-47662531 None:intergenic 25.0%
! TCTCTAAATTGACAAGTTTA+AGG + chr8_1:47663549-47663568 None:intergenic 25.0%
! TTAAACTTGTCAATTTAGAG+AGG - chr8_1:47663548-47663567 Msa1197370:intron 25.0%
! TATCATATGCCTTCATAATA+CGG - chr8_1:47663574-47663593 Msa1197370:intron 25.0%
! ATCTCATATCTAATCTTTCA+TGG - chr8_1:47663795-47663814 Msa1197370:intron 25.0%
! ATGAAAGGATTCATAATCTT+TGG - chr8_1:47664073-47664092 Msa1197370:intron 25.0%
!! TATGTAACCTTTGGTTTATT+TGG - chr8_1:47664390-47664409 Msa1197370:intron 25.0%
!!! AGGTAATAAAAGTACCAATT+TGG - chr8_1:47664670-47664689 Msa1197370:intron 25.0%
! GATAACAAAGGATTACATAA+AGG - chr8_1:47665131-47665150 Msa1197370:intron 25.0%
! ATTACATAAAGGAGAGAATA+TGG - chr8_1:47665142-47665161 Msa1197370:intron 25.0%
!!! AAGAAAGCACTTGTTATTTA+TGG - chr8_1:47665177-47665196 Msa1197370:intron 25.0%
!!! AGAAAGCACTTGTTATTTAT+GGG - chr8_1:47665178-47665197 Msa1197370:intron 25.0%
! AAAGGATCATATGATATGTT+GGG + chr8_1:47665284-47665303 None:intergenic 25.0%
! AAAAGGATCATATGATATGT+TGG + chr8_1:47665285-47665304 None:intergenic 25.0%
! AGTAAATTGAATTGGACAAA+AGG + chr8_1:47665302-47665321 None:intergenic 25.0%
! AGTTCTACATAATTGAAGTT+TGG + chr8_1:47665374-47665393 None:intergenic 25.0%
!!! TTCTAATTGTTGTGTTGTTT+TGG - chr8_1:47665504-47665523 Msa1197370:intron 25.0%
!! TGATCTAAAATTGATGATAC+AGG + chr8_1:47665717-47665736 None:intergenic 25.0%
!!! CCATCATTATTTCTAAGAAT+AGG + chr8_1:47666118-47666137 None:intergenic 25.0%
! CCTATTCTTAGAAATAATGA+TGG - chr8_1:47666115-47666134 Msa1197370:intron 25.0%
!!! AATAATGATGGGTTATTAAG+CGG - chr8_1:47666127-47666146 Msa1197370:intron 25.0%
!! TTAAAGTTTTTAATAGGGAG+TGG + chr8_1:47666154-47666173 None:intergenic 25.0%
! GAAATAGCTCCATTTATATA+AGG - chr8_1:47666232-47666251 Msa1197370:intron 25.0%
! TATCCAAACCCTTATATAAA+TGG + chr8_1:47666244-47666263 None:intergenic 25.0%
! TAGATACAGCAATTAGATAT+GGG + chr8_1:47666273-47666292 None:intergenic 25.0%
! TTAGATACAGCAATTAGATA+TGG + chr8_1:47666274-47666293 None:intergenic 25.0%
! AGAGTAATAAAAATGCTGTA+GGG + chr8_1:47666421-47666440 None:intergenic 25.0%
! AAGAGTAATAAAAATGCTGT+AGG + chr8_1:47666422-47666441 None:intergenic 25.0%
TTGTAAGCTTGGAAACATAT+TGG - chr8_1:47661704-47661723 Msa1197370:three_prime_UTR 30.0%
TTGTATGGTACTTACAGTTT+AGG + chr8_1:47661858-47661877 Msa1197360:intron 30.0%
GTCAAAAAACTCTTCATGAA+TGG + chr8_1:47662040-47662059 Msa1197360:CDS 30.0%
AGTACTTCCATTAAATTGTC+GGG + chr8_1:47662063-47662082 Msa1197360:CDS 30.0%
!! TTAATGGAAGTACTTTCATG+AGG - chr8_1:47662069-47662088 Msa1197370:three_prime_UTR 30.0%
! TGTTTTGTGAAACTTTTAGC+AGG - chr8_1:47662171-47662190 Msa1197370:three_prime_UTR 30.0%
ATAATGAGACAAAGTTCAAG+AGG - chr8_1:47662217-47662236 Msa1197370:three_prime_UTR 30.0%
TAATGAGACAAAGTTCAAGA+GGG - chr8_1:47662218-47662237 Msa1197370:three_prime_UTR 30.0%
!!! TTTTTTTGATGTGGGAGAAA+TGG - chr8_1:47662408-47662427 Msa1197370:three_prime_UTR 30.0%
! AAATGGTTACTTTGAACACA+AGG + chr8_1:47662495-47662514 None:intergenic 30.0%
! TAATTTCTGGAGACATCTTA+TGG - chr8_1:47662864-47662883 Msa1197370:CDS 30.0%
TTACAGTGATACTGTGTATT+TGG + chr8_1:47663023-47663042 None:intergenic 30.0%
!! TTGATTGTTTTATGGAGAAC+AGG - chr8_1:47663209-47663228 Msa1197370:intron 30.0%
TAGTGCAAAACAGAGTTATA+TGG + chr8_1:47663301-47663320 None:intergenic 30.0%
AACTCTCAATGTAGAAAAGA+TGG - chr8_1:47663405-47663424 Msa1197370:intron 30.0%
!! TCTTAGGTGATTTGGTTATT+CGG - chr8_1:47663438-47663457 Msa1197370:intron 30.0%
ATCATATGCCTTCATAATAC+GGG - chr8_1:47663575-47663594 Msa1197370:intron 30.0%
TTCCATCTGCATAAATGAAT+AGG - chr8_1:47663599-47663618 Msa1197370:intron 30.0%
ATCCTATTCATTTATGCAGA+TGG + chr8_1:47663604-47663623 None:intergenic 30.0%
! GTGGAAGTTTTCTTCTTTAT+TGG - chr8_1:47663998-47664017 Msa1197370:intron 30.0%
AATGATCAAGAAGAGATGAA+AGG - chr8_1:47664058-47664077 Msa1197370:intron 30.0%
! AGGATTCATAATCTTTGGAA+TGG - chr8_1:47664078-47664097 Msa1197370:intron 30.0%
! GCTTTTATACTGCACTATAA+AGG + chr8_1:47664495-47664514 None:intergenic 30.0%
AGTGCAGTATAAAAGCTTAT+TGG - chr8_1:47664499-47664518 Msa1197370:intron 30.0%
TTTCAGTTTGAATCTTGTGT+AGG - chr8_1:47664827-47664846 Msa1197370:intron 30.0%
TTCAGTTTGAATCTTGTGTA+GGG - chr8_1:47664828-47664847 Msa1197370:intron 30.0%
CTAATGATTAAGTAATCAGC+AGG + chr8_1:47664888-47664907 None:intergenic 30.0%
GAAACACAATGCAAAACATT+TGG - chr8_1:47664978-47664997 Msa1197370:intron 30.0%
TACAATGATATAGGAGATTG+TGG - chr8_1:47665104-47665123 Msa1197370:intron 30.0%
GATTGTGGTAAAGATAACAA+AGG - chr8_1:47665119-47665138 Msa1197370:intron 30.0%
TCCAATTCAATTTACTGCTA+TGG - chr8_1:47665306-47665325 Msa1197370:intron 30.0%
ACCATAGCAGTAAATTGAAT+TGG + chr8_1:47665310-47665329 None:intergenic 30.0%
GTTAAACTACATTTACACCT+TGG - chr8_1:47665398-47665417 Msa1197370:intron 30.0%
! AACCAACAACTTTTCTGATT+GGG + chr8_1:47665676-47665695 None:intergenic 30.0%
! AAACCAACAACTTTTCTGAT+TGG + chr8_1:47665677-47665696 None:intergenic 30.0%
! TCTAAAATTGATGATACAGG+TGG + chr8_1:47665714-47665733 None:intergenic 30.0%
! AAAATTTCTCGGGCTTTATA+TGG - chr8_1:47665849-47665868 Msa1197370:intron 30.0%
!!! ATTTTTGTTTTTTACGGGGA+AGG - chr8_1:47665904-47665923 Msa1197370:intron 30.0%
! TAATCTGGCTTAACATAGAA+AGG - chr8_1:47665928-47665947 Msa1197370:intron 30.0%
!! ATAATGATGGGTTATTAAGC+GGG - chr8_1:47666128-47666147 Msa1197370:intron 30.0%
AGATACAGCAATTAGATATG+GGG + chr8_1:47666272-47666291 None:intergenic 30.0%
! TCCTTACTCTTTTGTAACTA+TGG - chr8_1:47666489-47666508 Msa1197370:intron 30.0%
ACCATAGTTACAAAAGAGTA+AGG + chr8_1:47666493-47666512 None:intergenic 30.0%
!! TGAACCTCTAGGATATATCT+GGG - chr8_1:47661664-47661683 Msa1197370:three_prime_UTR 35.0%
GAATGACACAATGGACAAAA+TGG + chr8_1:47661778-47661797 Msa1197360:intron 35.0%
ACACATCATGAATGACACAA+TGG + chr8_1:47661787-47661806 Msa1197360:intron 35.0%
TCTACCAAAACAATCTGATC+TGG + chr8_1:47662009-47662028 Msa1197360:CDS 35.0%
! TTTTGACCCCGACAATTTAA+TGG - chr8_1:47662053-47662072 Msa1197370:three_prime_UTR 35.0%
GTACTTCCATTAAATTGTCG+GGG + chr8_1:47662062-47662081 Msa1197360:CDS 35.0%
CACCCAACTGAAATTTACAA+AGG + chr8_1:47662468-47662487 None:intergenic 35.0%
! TGAGAAACTGTCAAAGTGTT+TGG - chr8_1:47662983-47663002 Msa1197370:intron 35.0%
AATGAGAGAGAACTCAAAAG+AGG + chr8_1:47663111-47663130 None:intergenic 35.0%
!! AGATGGTAGAGTATTGTCTT+AGG - chr8_1:47663422-47663441 Msa1197370:intron 35.0%
! GAGTATTGTCTTAGGTGATT+TGG - chr8_1:47663430-47663449 Msa1197370:intron 35.0%
!! CTTAGGTGATTTGGTTATTC+GGG - chr8_1:47663439-47663458 Msa1197370:intron 35.0%
!! TTAGGTGATTTGGTTATTCG+GGG - chr8_1:47663440-47663459 Msa1197370:intron 35.0%
AGATACTGTTAACTCTCTCT+TGG + chr8_1:47663507-47663526 None:intergenic 35.0%
AGAAAGAGCAAGTCATTTCA+TGG - chr8_1:47663768-47663787 Msa1197370:intron 35.0%
TTGACCACAAATGTCATAGT+TGG - chr8_1:47664111-47664130 Msa1197370:intron 35.0%
TGACCACAAATGTCATAGTT+GGG - chr8_1:47664112-47664131 Msa1197370:intron 35.0%
ATACCCAACTATGACATTTG+TGG + chr8_1:47664118-47664137 None:intergenic 35.0%
ATCAAAATCCAAGTTAGGCA+AGG + chr8_1:47664217-47664236 None:intergenic 35.0%
GCATAGAGATAAAAGACATC+AGG + chr8_1:47664419-47664438 None:intergenic 35.0%
CTATAAAGGACTTTGTAGGA+AGG + chr8_1:47664481-47664500 None:intergenic 35.0%
TGCACTATAAAGGACTTTGT+AGG + chr8_1:47664485-47664504 None:intergenic 35.0%
TAAACTGCATAACTGACATG+AGG - chr8_1:47664650-47664669 Msa1197370:intron 35.0%
! AATGTGAGTATTGTGCGTTA+GGG + chr8_1:47665027-47665046 None:intergenic 35.0%
! AAATGTGAGTATTGTGCGTT+AGG + chr8_1:47665028-47665047 None:intergenic 35.0%
!! TAAGAAGGCACTTCTAAAGA+GGG + chr8_1:47665064-47665083 None:intergenic 35.0%
TCAGCATTGTATCAGTAAGA+AGG + chr8_1:47665079-47665098 None:intergenic 35.0%
AAGGAGAGAATATGGCATAA+AGG - chr8_1:47665150-47665169 Msa1197370:intron 35.0%
AGAGCTACTCATCAAATTTC+AGG + chr8_1:47665213-47665232 None:intergenic 35.0%
CAAAGAGGCAAGAAATTACA+TGG - chr8_1:47665569-47665588 Msa1197370:intron 35.0%
AAACTGCTAGCAAACTATGA+AGG - chr8_1:47665750-47665769 Msa1197370:CDS 35.0%
AACTGCTAGCAAACTATGAA+GGG - chr8_1:47665751-47665770 Msa1197370:CDS 35.0%
GCTTTATATGGAGAAGGTAA+GGG - chr8_1:47665861-47665880 Msa1197370:intron 35.0%
! ACATAGAAAGGCTTTATACG+AGG - chr8_1:47665940-47665959 Msa1197370:intron 35.0%
! CATAGAAAGGCTTTATACGA+GGG - chr8_1:47665941-47665960 Msa1197370:intron 35.0%
GCTCCATTTATATAAGGGTT+TGG - chr8_1:47666238-47666257 Msa1197370:intron 35.0%
!! TAATTGGCTTGTGAACCTCT+AGG - chr8_1:47661653-47661672 Msa1197370:three_prime_UTR 40.0%
!! GTGAACCTCTAGGATATATC+TGG - chr8_1:47661663-47661682 Msa1197370:three_prime_UTR 40.0%
TCATTCATGATGTGTGTGTG+TGG - chr8_1:47661792-47661811 Msa1197370:three_prime_UTR 40.0%
AAACAATCTGATCTGGCATG+TGG + chr8_1:47662002-47662021 Msa1197360:CDS 40.0%
! CATGCCAGATCAGATTGTTT+TGG - chr8_1:47662002-47662021 Msa1197370:three_prime_UTR 40.0%
! TATCTTGATAGCTACTCGCA+AGG + chr8_1:47662266-47662285 None:intergenic 40.0%
CAAGATACTGCCATTGAACT+TGG - chr8_1:47662279-47662298 Msa1197370:three_prime_UTR 40.0%
! ACTGTACTTTGTTTCGCTCT+TGG - chr8_1:47662727-47662746 Msa1197370:intron 40.0%
! AAAGTGTTTAGATAGCAGCC+AGG + chr8_1:47662964-47662983 None:intergenic 40.0%
! ACTGTCAAAGTGTTTGGTGA+TGG - chr8_1:47662989-47663008 Msa1197370:intron 40.0%
! CTGTCAAAGTGTTTGGTGAT+GGG - chr8_1:47662990-47663009 Msa1197370:intron 40.0%
!! TAGGTGATTTGGTTATTCGG+GGG - chr8_1:47663441-47663460 Msa1197370:intron 40.0%
TAATCTTTCATGGTACCTGC+AGG - chr8_1:47663805-47663824 Msa1197370:intron 40.0%
TGTTCAAACCTTGCCTAACT+TGG - chr8_1:47664206-47664225 Msa1197370:intron 40.0%
!!! GCTCTAAGATTTTGCAAGCT+TGG - chr8_1:47664303-47664322 Msa1197370:intron 40.0%
CAGGCATCCAAATAAACCAA+AGG + chr8_1:47664400-47664419 None:intergenic 40.0%
TAGTTGAGGGAGAACTTGAA+AGG - chr8_1:47664540-47664559 Msa1197370:intron 40.0%
GGGAGAACTTGAAAGGAAAA+TGG - chr8_1:47664547-47664566 Msa1197370:intron 40.0%
TAGTTGAGGGAGAACTTGAA+AGG - chr8_1:47664540-47664559 Msa1197370:intron 40.0%
GGGAGAACTTGAAAGGAAAA+TGG - chr8_1:47664547-47664566 Msa1197370:intron 40.0%
TATGCAGTTTAGCACTCTCA+TGG + chr8_1:47664641-47664660 None:intergenic 40.0%
TTGAATCTTGTGTAGGGACT+TGG - chr8_1:47664834-47664853 Msa1197370:intron 40.0%
TGAATCTTGTGTAGGGACTT+GGG - chr8_1:47664835-47664854 Msa1197370:intron 40.0%
AGTAATCAGCAGGATTGAGT+GGG + chr8_1:47664878-47664897 None:intergenic 40.0%
AAGTAATCAGCAGGATTGAG+TGG + chr8_1:47664879-47664898 None:intergenic 40.0%
!! GTAAGAAGGCACTTCTAAAG+AGG + chr8_1:47665065-47665084 None:intergenic 40.0%
GATTACCTTGATCATGCAAG+TGG + chr8_1:47665252-47665271 None:intergenic 40.0%
! GAAGTTTGGAAGCATGTTTG+TGG + chr8_1:47665360-47665379 None:intergenic 40.0%
!! GTAACTTCAACTTGCTGCTA+TGG - chr8_1:47665528-47665547 Msa1197370:intron 40.0%
GTCCCAATCAGAAAAGTTGT+TGG - chr8_1:47665671-47665690 Msa1197370:intron 40.0%
AAACTATGAAGGGTTTCAGC+TGG - chr8_1:47665761-47665780 Msa1197370:CDS 40.0%
TGATAAGGGTTCAAGTAGGA+TGG - chr8_1:47665790-47665809 Msa1197370:CDS 40.0%
! GGCTTTATATGGAGAAGGTA+AGG - chr8_1:47665860-47665879 Msa1197370:intron 40.0%
! TTTTACGGGGAAGGTTAATC+TGG - chr8_1:47665913-47665932 Msa1197370:intron 40.0%
! TGATTTGGCCATTTAAGACC+AGG + chr8_1:47666065-47666084 None:intergenic 40.0%
CTCACCCAGATATATCCTAG+AGG + chr8_1:47661671-47661690 Msa1197360:intron 45.0%
CTAGGATATATCTGGGTGAG+TGG - chr8_1:47661671-47661690 Msa1197370:three_prime_UTR 45.0%
GTTTCCAAGCTTACAAACCC+TGG + chr8_1:47661700-47661719 Msa1197360:intron 45.0%
ATCTTCCTAGCAAAGCGAGA+TGG + chr8_1:47661753-47661772 Msa1197360:intron 45.0%
TGGCATGTGGTAATCAGATC+TGG + chr8_1:47661989-47662008 Msa1197360:CDS 45.0%
TGAGACAAAGTTCAAGAGGG+TGG - chr8_1:47662221-47662240 Msa1197370:three_prime_UTR 45.0%
GAGACAAAGTTCAAGAGGGT+GGG - chr8_1:47662222-47662241 Msa1197370:three_prime_UTR 45.0%
GATGGAAGCCCGTATTATGA+AGG + chr8_1:47663586-47663605 None:intergenic 45.0%
CAATTGCTTGATTGTCCTGC+AGG + chr8_1:47663823-47663842 None:intergenic 45.0%
CATGCACTGCTTGTAGTTGA+GGG - chr8_1:47664527-47664546 Msa1197370:intron 45.0%
!! CATGAGAGTGCTGTAGTTGA+GGG - chr8_1:47664583-47664602 Msa1197370:intron 45.0%
GCAAGTGGTGAACTCTAAAC+AGG + chr8_1:47665237-47665256 None:intergenic 45.0%
GTTCACCACTTGCATGATCA+AGG - chr8_1:47665244-47665263 Msa1197370:intron 45.0%
CTTGCTGCTATGGAATCCTA+CGG - chr8_1:47665538-47665557 Msa1197370:intron 45.0%
TGCTATGGAATCCTACGGAT+TGG - chr8_1:47665543-47665562 Msa1197370:intron 45.0%
TATGAAGGGTTTCAGCTGGA+TGG - chr8_1:47665765-47665784 Msa1197370:CDS 45.0%
TTCAGCTGGATGGCATGATA+AGG - chr8_1:47665775-47665794 Msa1197370:CDS 45.0%
TCAGCTGGATGGCATGATAA+GGG - chr8_1:47665776-47665795 Msa1197370:CDS 45.0%
GGCATGATAAGGGTTCAAGT+AGG - chr8_1:47665786-47665805 Msa1197370:CDS 45.0%
! TCTCGGGCTTTATATGGAGA+AGG - chr8_1:47665855-47665874 Msa1197370:intron 45.0%
!! GCAGATCACCTGGTCTTAAA+TGG - chr8_1:47666054-47666073 Msa1197370:intron 45.0%
! TTCGCTGATGTGGCATTTTG+TGG + chr8_1:47666201-47666220 None:intergenic 45.0%
AAGCAACTGTTTCGCTGATG+TGG + chr8_1:47666211-47666230 None:intergenic 45.0%
! AGTGTCACTAAGTCCCACAT+CGG - chr8_1:47666344-47666363 Msa1197370:intron 45.0%
GAGTGATGCAGAGCAAATGT+GGG - chr8_1:47666375-47666394 Msa1197370:intron 45.0%
AAAATGCTGTAGGGCACATG+AGG + chr8_1:47666412-47666431 None:intergenic 45.0%
!! AATAAATAATTAAAATTTCT+CGG - chr8_1:47665838-47665857 Msa1197370:intron 5.0%
!! AAGAATTAAAAATATTAATT+AGG - chr8_1:47666084-47666103 Msa1197370:intron 5.0%
GCTTCCAGGGTTTGTAAGCT+TGG - chr8_1:47661693-47661712 Msa1197370:three_prime_UTR 50.0%
TCATGCCATCTCGCTTTGCT+AGG - chr8_1:47661745-47661764 Msa1197370:three_prime_UTR 50.0%
TCATGATGTGTGTGTGTGGC+AGG - chr8_1:47661796-47661815 Msa1197370:three_prime_UTR 50.0%
!! CAAGAGGGTGGGTGTTTTTG+TGG - chr8_1:47662233-47662252 Msa1197370:three_prime_UTR 50.0%
TGCTTGCTTACATGCTTGCC+TGG - chr8_1:47662943-47662962 Msa1197370:intron 50.0%
!! GTGATTTGGTTATTCGGGGG+AGG - chr8_1:47663444-47663463 Msa1197370:intron 50.0%
ATTCGGGGGAGGAAACTTGT+AGG - chr8_1:47663455-47663474 Msa1197370:intron 50.0%
CCTCAACTACAAGCAGTGCA+TGG + chr8_1:47664529-47664548 None:intergenic 50.0%
CCATGCACTGCTTGTAGTTG+AGG - chr8_1:47664526-47664545 Msa1197370:intron 50.0%
CCTCAACTACAGCACTCTCA+TGG + chr8_1:47664585-47664604 None:intergenic 50.0%
!! CCATGAGAGTGCTGTAGTTG+AGG - chr8_1:47664582-47664601 Msa1197370:intron 50.0%
CCTCTTTGTCTCCAATCCGT+AGG + chr8_1:47665557-47665576 None:intergenic 50.0%
!! CCTACGGATTGGAGACAAAG+AGG - chr8_1:47665554-47665573 Msa1197370:intron 50.0%
AAGTGGATGATCAGCCTGTG+TGG + chr8_1:47666024-47666043 None:intergenic 50.0%
ACACAGGCTGATCATCCACT+TGG - chr8_1:47666023-47666042 Msa1197370:intron 50.0%
GATCTGCACTTCTCACCAAG+TGG + chr8_1:47666041-47666060 None:intergenic 50.0%
AAGTCCCACATCGGAACATG+AGG - chr8_1:47666353-47666372 Msa1197370:intron 50.0%
CACTCCTCATGTTCCGATGT+GGG + chr8_1:47666360-47666379 None:intergenic 50.0%
TCACTCCTCATGTTCCGATG+TGG + chr8_1:47666361-47666380 None:intergenic 50.0%
GGAGTGATGCAGAGCAAATG+TGG - chr8_1:47666374-47666393 Msa1197370:intron 50.0%
TATCTGGGTGAGTGGCTTCC+AGG - chr8_1:47661679-47661698 Msa1197370:three_prime_UTR 55.0%
ATCTGGGTGAGTGGCTTCCA+GGG - chr8_1:47661680-47661699 Msa1197370:three_prime_UTR 55.0%
TGATGTGTGTGTGTGGCAGG+AGG - chr8_1:47661799-47661818 Msa1197370:three_prime_UTR 55.0%
GTGTGTGTGGCAGGAGGATA+TGG - chr8_1:47661805-47661824 Msa1197370:three_prime_UTR 55.0%
! GGTGAGAAGTGCAGATCACC+TGG - chr8_1:47666044-47666063 Msa1197370:intron 55.0%
AGAAGGCGGCAGAGGGCAGA+AGG + chr8_1:47665995-47666014 None:intergenic 65.0%
GCGGCAGAGGGCAGAAGGTG+TGG + chr8_1:47665990-47666009 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 47661518 47666526 47661518 ID=Msa1197370;Name=Msa1197370
chr8_1 mRNA 47661518 47666526 47661518 ID=Msa1197370-mRNA-1;Parent=Msa1197370;Name=Msa1197370-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.33|0.75|0.75|0|0|4|997|76
chr8_1 exon 47661518 47662470 47661518 ID=Msa1197370-mRNA-1:exon:15144;Parent=Msa1197370-mRNA-1
chr8_1 exon 47662779 47662927 47662779 ID=Msa1197370-mRNA-1:exon:15143;Parent=Msa1197370-mRNA-1
chr8_1 exon 47665733 47665851 47665733 ID=Msa1197370-mRNA-1:exon:15142;Parent=Msa1197370-mRNA-1
chr8_1 exon 47666520 47666526 47666520 ID=Msa1197370-mRNA-1:exon:15141;Parent=Msa1197370-mRNA-1
chr8_1 CDS 47666520 47666526 47666520 ID=Msa1197370-mRNA-1:cds;Parent=Msa1197370-mRNA-1
chr8_1 CDS 47665733 47665851 47665733 ID=Msa1197370-mRNA-1:cds;Parent=Msa1197370-mRNA-1
chr8_1 CDS 47662823 47662927 47662823 ID=Msa1197370-mRNA-1:cds;Parent=Msa1197370-mRNA-1
chr8_1 three_prime_UTR 47662779 47662822 47662779 ID=Msa1197370-mRNA-1:three_prime_utr;Parent=Msa1197370-mRNA-1
chr8_1 three_prime_UTR 47661518 47662470 47661518 ID=Msa1197370-mRNA-1:three_prime_utr;Parent=Msa1197370-mRNA-1
Gene Sequence

>Msa1197370

ATGGTAGGTTATCAAATACGAATGAAGACAAATAATGAGACAAAGTTCAAGAGGGTGGGTGTTTTTGTGGAAGTAGTCCTTGCGAGTAGCTATCAAGATACTGCCATTGAACTTGGAAATGAATTAGAGATTGTGGTAAAGATAACAAAGGATTACATAAAGGAGAGAATATGGCATAAAGGAGAGAAGAAAGCACTTGTTATTTATGGGAAGAAAGCACCTGAAATTTGA

Protein sequence

>Msa1197370

MVGYQIRMKTNNETKFKRVGVFVEVVLASSYQDTAIELGNELEIVVKITKDYIKERIWHKGEKKALVIYGKKAPEI*