AlfalfaGEDB | Msa1154820

M. sativa cultivar zhongmu-4 / Msa1154820

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa1154820	0.806798	6.905063e-50	-8.615850e-47
Msa0012780	Msa1154820	-0.814114	1.816449e-51	-8.615850e-47
Msa0022640	Msa1154820	0.819517	1.113968e-52	-8.615850e-47
Msa0052460	Msa1154820	0.800034	1.741507e-48	-8.615850e-47
Msa0106110	Msa1154820	-0.800243	1.579484e-48	-8.615850e-47
Msa0141550	Msa1154820	0.800587	1.343896e-48	-8.615850e-47
Msa0141670	Msa1154820	0.811139	8.129086e-51	-8.615850e-47
Msa0147550	Msa1154820	0.801682	8.023798e-49	-8.615850e-47
Msa0159750	Msa1154820	0.801008	1.102401e-48	-8.615850e-47
Msa0161680	Msa1154820	0.823488	1.348261e-53	-8.615850e-47

Showing 1 to 10 of 167 entries

Previous1 2 3 4 5…17Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 136 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTTCTCGGGCTTTATA+TGG	0.250180	7_4:-42540086	Msa1154820:three_prime_UTR
AAAATTTCTCGGGCTTTATA+TGG	0.250180	7_4:-42542049	Msa1154820:three_prime_UTR
AAACTATGAAGGGCTTCAGC+TGG	0.519080	7_4:-42540174	Msa1154820:three_prime_UTR
AAACTATGAAGGGCTTCAGC+TGG	0.519080	7_4:-42542137	Msa1154820:three_prime_UTR
AAACTGCTAGCAAACTATGA+AGG	0.493697	7_4:-42540185	Msa1154820:three_prime_UTR
AAACTGCTAGCAAACTATGA+AGG	0.493697	7_4:-42542148	Msa1154820:three_prime_UTR
AAATAGCTCCATTTATATAA+GGG	0.383955	7_4:-42539702	Msa1154820:three_prime_UTR
AAATAGCTCCATTTATATAA+GGG	0.383955	7_4:-42541665	Msa1154820:three_prime_UTR
AACTGCTAGCAAACTATGAA+GGG	0.574265	7_4:-42540184	Msa1154820:three_prime_UTR
AACTGCTAGCAAACTATGAA+GGG	0.574265	7_4:-42542147	Msa1154820:three_prime_UTR

Showing 1 to 10 of 136 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TTGTAAGCTTGGAAACATAT+TGG	-	chr7_4:42539877-42539896	Msa1154820:three_prime_UTR	30.0%
TTGTATGGTACTTACAGTTT+AGG	+	chr7_4:42540031-42540050	None:intergenic	30.0%
GTCAAAAAACTCTTCATGAA+TGG	+	chr7_4:42540213-42540232	None:intergenic	30.0%
AGTACTTCCATTAAATTGTC+GGG	+	chr7_4:42540236-42540255	None:intergenic	30.0%
ATAATGAGACAAAGTTCAAG+AGG	-	chr7_4:42540390-42540409	Msa1154820:intron	30.0%
TAATGAGACAAAGTTCAAGA+GGG	-	chr7_4:42540391-42540410	Msa1154820:intron	30.0%
TTACAGTGATACTGTGTATT+TGG	+	chr7_4:42541192-42541211	None:intergenic	30.0%
TAGTGCAAAACAGAGTTATA+TGG	+	chr7_4:42541470-42541489	None:intergenic	30.0%
AACTCTCAATGTAGAAAAGA+TGG	-	chr7_4:42541574-42541593	Msa1154820:three_prime_UTR	30.0%
ATCATATGCCTTCATAATAC+GGG	-	chr7_4:42541744-42541763	Msa1154820:three_prime_UTR	30.0%

Showing 1 to 10 of 359 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	42539692	42546343	42539692	ID=Msa1154820;Name=Msa1154820
chr7_4	mRNA	42539692	42546343	42539692	ID=Msa1154820-mRNA-1;Parent=Msa1154820;Name=Msa1154820-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0\|0.66\|0.85\|0.85\|0.33\|0.28\|7\|1923\|76
chr7_4	exon	42539692	42540389	42539692	ID=Msa1154820-mRNA-1:exon:10489;Parent=Msa1154820-mRNA-1
chr7_4	exon	42540692	42540840	42540692	ID=Msa1154820-mRNA-1:exon:10488;Parent=Msa1154820-mRNA-1
chr7_4	exon	42541286	42541372	42541286	ID=Msa1154820-mRNA-1:exon:10487;Parent=Msa1154820-mRNA-1
chr7_4	exon	42541402	42542346	42541402	ID=Msa1154820-mRNA-1:exon:10486;Parent=Msa1154820-mRNA-1
chr7_4	exon	42542655	42542803	42542655	ID=Msa1154820-mRNA-1:exon:10485;Parent=Msa1154820-mRNA-1
chr7_4	exon	42545551	42545669	42545551	ID=Msa1154820-mRNA-1:exon:10484;Parent=Msa1154820-mRNA-1
chr7_4	exon	42546337	42546343	42546337	ID=Msa1154820-mRNA-1:exon:10483;Parent=Msa1154820-mRNA-1
chr7_4	CDS	42546337	42546343	42546337	ID=Msa1154820-mRNA-1:cds;Parent=Msa1154820-mRNA-1
chr7_4	CDS	42545551	42545669	42545551	ID=Msa1154820-mRNA-1:cds;Parent=Msa1154820-mRNA-1
chr7_4	CDS	42542699	42542803	42542699	ID=Msa1154820-mRNA-1:cds;Parent=Msa1154820-mRNA-1
chr7_4	three_prime_UTR	42542655	42542698	42542655	ID=Msa1154820-mRNA-1:three_prime_utr;Parent=Msa1154820-mRNA-1
chr7_4	three_prime_UTR	42541402	42542346	42541402	ID=Msa1154820-mRNA-1:three_prime_utr;Parent=Msa1154820-mRNA-1
chr7_4	three_prime_UTR	42541286	42541372	42541286	ID=Msa1154820-mRNA-1:three_prime_utr;Parent=Msa1154820-mRNA-1
chr7_4	three_prime_UTR	42540692	42540840	42540692	ID=Msa1154820-mRNA-1:three_prime_utr;Parent=Msa1154820-mRNA-1
chr7_4	three_prime_UTR	42539692	42540389	42539692	ID=Msa1154820-mRNA-1:three_prime_utr;Parent=Msa1154820-mRNA-1

Gene Sequence	>Msa1154820 ATGGTAGGTTATCAAATACGAATGAAGACAAATAATGAGACAAAGTTCAAGAGGGTGGGTGTTTTTGTGGAAGTAGTCCTTGCGAGTAGCTATCAAGATACTGCCATTGAACTTGGAAATGAATTAGAGATTGTGGTAAAGATAACAAAGGATTACATAAAGGAGAGAATATGGCATAAAGGAGAGAAGAAAGCACCTGTTATTTATGGGAAGAAAGCACCTGAAATTTGA
Protein sequence	>Msa1154820 MVGYQIRMKTNNETKFKRVGVFVEVVLASSYQDTAIELGNELEIVVKITKDYIKERIWHKGEKKAPVIYGKKAPEI*