Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0213080 | Msa0947410 | 0.800472 | 1.418629e-48 | -8.615850e-47 |
| Msa0409820 | Msa0947410 | 0.807487 | 4.936048e-50 | -8.615850e-47 |
| Msa0591780 | Msa0947410 | 0.809783 | 1.595614e-50 | -8.615850e-47 |
| Msa0599250 | Msa0947410 | 0.800639 | 1.311390e-48 | -8.615850e-47 |
| Msa0947410 | Msa1027180 | 0.966043 | 2.135076e-125 | -8.615850e-47 |
| Msa0947410 | Msa1154820 | 0.948815 | 4.457143e-107 | -8.615850e-47 |
| Msa0947410 | Msa1197370 | 0.852828 | 3.573966e-61 | -8.615850e-47 |
| Msa0947410 | Msa1348480 | 0.847671 | 9.975117e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 72 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAAGCACCTGTTATTTA+TGG | 0.167139 | 6_3:-30061668 | Msa0947410:CDS |
| CATTAATGTCATTCCATTAA+TGG | 0.176005 | 6_3:+30060435 | None:intergenic |
| AATCAAAACCCTTATATAAA+TGG | 0.185292 | 6_3:+30060604 | None:intergenic |
| GAAATAGCTCCATTTATATA+AGG | 0.225284 | 6_3:-30060613 | Msa0947410:three_prime_UTR |
| AATGCTTAACATGTGCTATA+TGG | 0.240507 | 6_3:-30060416 | None:intergenic |
| AAAATTTCTCGGGCTTTATA+TGG | 0.250180 | 6_3:-30060996 | Msa0947410:three_prime_UTR |
| AGAGCTACTCATCAAATTTC+AGG | 0.270993 | 6_3:+30061635 | None:intergenic |
| GCAGATCACCTGGTCTTAAA+TGG | 0.311454 | 6_3:-30060791 | Msa0947410:three_prime_UTR |
| TTACATATCTTGTATAGAAT+TGG | 0.314853 | 6_3:-30061199 | Msa0947410:three_prime_UTR |
| TATTGCTAATCAGTGCCTTC+AGG | 0.329501 | 6_3:+30060485 | None:intergenic |
| AATAAATAATTAAAATTTCT+CGG | 0.342425 | 6_3:-30061007 | Msa0947410:three_prime_UTR |
| ATTACATAAAGGAGAGAATA+TGG | 0.343599 | 6_3:-30061703 | Msa0947410:CDS |
| CAAGATACTGCCATTGAACT+TGG | 0.379589 | 6_3:-30064508 | Msa0947410:CDS |
| AGAAAGCACCTGTTATTTAT+GGG | 0.379944 | 6_3:-30061667 | Msa0947410:CDS |
| AAATAGCTCCATTTATATAA+GGG | 0.383955 | 6_3:-30060612 | Msa0947410:three_prime_UTR |
| GCTTTCTTCCCATAAATAAC+AGG | 0.391981 | 6_3:+30061659 | None:intergenic |
| ATAAATAATTAAAATTTCTC+GGG | 0.419506 | 6_3:-30061006 | Msa0947410:three_prime_UTR |
| TAATCTGGCTTAACATAGAA+AGG | 0.421828 | 6_3:-30060917 | Msa0947410:three_prime_UTR |
| ATGCTTAACATGTGCTATAT+GGG | 0.424946 | 6_3:-30060415 | None:intergenic |
| CCATCATTATTTCTAAGAAT+AGG | 0.428755 | 6_3:+30060730 | None:intergenic |
| GATAACAAAGGATTACATAA+AGG | 0.436486 | 6_3:-30061714 | Msa0947410:CDS |
| TTCAGCTGGATGGCATGATA+AGG | 0.436569 | 6_3:-30061070 | Msa0947410:three_prime_UTR |
| GGCTTTATATGGAGAAGGTA+AGG | 0.443686 | 6_3:-30060985 | Msa0947410:three_prime_UTR |
| GCAAGTGGTGAACTCTAAAC+AGG | 0.462787 | 6_3:+30061611 | None:intergenic |
| CCTATTCTTAGAAATAATGA+TGG | 0.465042 | 6_3:-30060730 | Msa0947410:three_prime_UTR |
| AAGGAGAGAATATGGCATAA+AGG | 0.466216 | 6_3:-30061695 | Msa0947410:CDS |
| ATCAGTGCCTTCAGGGCAAA+TGG | 0.466713 | 6_3:+30060493 | None:intergenic |
| TACAATGATATAGGAGATTG+TGG | 0.467972 | 6_3:-30061741 | Msa0947410:intron |
| AATAATGATGGGTTATTAAG+CGG | 0.473078 | 6_3:-30060718 | Msa0947410:three_prime_UTR |
| TTCTTAACCATTTGCCCTGA+AGG | 0.474305 | 6_3:-30060500 | Msa0947410:three_prime_UTR |
| TGATCTAAAATTGATGATAC+AGG | 0.475870 | 6_3:+30061131 | None:intergenic |
| TAATTCATTTCCAAGTTCAA+TGG | 0.482603 | 6_3:+30064498 | None:intergenic |
| AATGCTATTGAATATACAAA+TGG | 0.489437 | 6_3:-30061251 | Msa0947410:three_prime_UTR |
| AAACTGCTAGCAAACTATGA+AGG | 0.493697 | 6_3:-30061095 | Msa0947410:three_prime_UTR |
| TCAGCTGGATGGCATGATAA+GGG | 0.496675 | 6_3:-30061069 | Msa0947410:three_prime_UTR |
| GCGGCAGAGGGCAGAAGGTG+TGG | 0.498337 | 6_3:+30060858 | None:intergenic |
| AGAAGGCGGCAGAGGGCAGA+AGG | 0.499716 | 6_3:+30060853 | None:intergenic |
| CAAAGAGGCAAGAAATTACA+TGG | 0.507736 | 6_3:-30061276 | Msa0947410:intron |
| GTTCACCACTTGCATGATCA+AGG | 0.514280 | 6_3:-30061601 | Msa0947410:intron |
| AAACTATGAAGGGCTTCAGC+TGG | 0.519080 | 6_3:-30061084 | Msa0947410:three_prime_UTR |
| AAGCAACTGTTTCGCTGATG+TGG | 0.519623 | 6_3:+30060637 | None:intergenic |
| GGTGAGAAGTGCAGATCACC+TGG | 0.524126 | 6_3:-30060801 | Msa0947410:three_prime_UTR |
| GGATTGTCAGAAGGCGGCAG+AGG | 0.525146 | 6_3:+30060845 | None:intergenic |
| GTCCCAATGAGAAAAGTTGT+TGG | 0.539840 | 6_3:-30061174 | Msa0947410:three_prime_UTR |
| TCTCGGGCTTTATATGGAGA+AGG | 0.541439 | 6_3:-30060990 | Msa0947410:three_prime_UTR |
| CTATTCTTAGAAATAATGAT+GGG | 0.545280 | 6_3:-30060729 | Msa0947410:three_prime_UTR |
| ATTGCTAATCAGTGCCTTCA+GGG | 0.548698 | 6_3:+30060486 | None:intergenic |
| GATTGTCAGAAGGCGGCAGA+GGG | 0.550966 | 6_3:+30060846 | None:intergenic |
| TGATTTGGCCATTTAAGACC+AGG | 0.558051 | 6_3:+30060783 | None:intergenic |
| TGATAAGGGTTCAAGTAGGA+TGG | 0.559261 | 6_3:-30061055 | Msa0947410:three_prime_UTR |
| ATAATGATGGGTTATTAAGC+GGG | 0.567133 | 6_3:-30060717 | Msa0947410:three_prime_UTR |
| AACTGCTAGCAAACTATGAA+GGG | 0.574265 | 6_3:-30061094 | Msa0947410:three_prime_UTR |
| TATGAAGGGCTTCAGCTGGA+TGG | 0.585494 | 6_3:-30061080 | Msa0947410:three_prime_UTR |
| TGAGACAAAGTTCAAGAGGG+TGG | 0.589004 | 6_3:-30064566 | Msa0947410:CDS |
| ATAATGAGACAAAGTTCAAG+AGG | 0.589640 | 6_3:-30064570 | Msa0947410:CDS |
| TGTAGAATGAAAATAATGGT+AGG | 0.594513 | 6_3:-30065283 | None:intergenic |
| GAGACAAAGTTCAAGAGGGT+GGG | 0.600020 | 6_3:-30064565 | Msa0947410:CDS |
| CATAGAAAGGCTTTATACGA+GGG | 0.610134 | 6_3:-30060904 | Msa0947410:three_prime_UTR |
| AGCCTGTGTGGATTGTCAGA+AGG | 0.620100 | 6_3:+30060836 | None:intergenic |
| GCTTTATATGGAGAAGGTAA+GGG | 0.623958 | 6_3:-30060984 | Msa0947410:three_prime_UTR |
| ACACAGGCTGATCATCCACT+TGG | 0.630161 | 6_3:-30060822 | Msa0947410:three_prime_UTR |
| CGCCTTCTGACAATCCACAC+AGG | 0.642397 | 6_3:-30060838 | Msa0947410:three_prime_UTR |
| CTGTGTGGATTGTCAGAAGG+CGG | 0.647153 | 6_3:+30060839 | None:intergenic |
| GATTGTGGTAAAGATAACAA+AGG | 0.647801 | 6_3:-30061726 | Msa0947410:CDS |
| ACATAGAAAGGCTTTATACG+AGG | 0.656319 | 6_3:-30060905 | Msa0947410:three_prime_UTR |
| TCTAAAATTGATGATACAGG+TGG | 0.658257 | 6_3:+30061134 | None:intergenic |
| TAATGAGACAAAGTTCAAGA+GGG | 0.659889 | 6_3:-30064569 | Msa0947410:CDS |
| TATCTTGATAGCTACTCGCA+AGG | 0.663358 | 6_3:+30064524 | None:intergenic |
| GGCATGATAAGGGTTCAAGT+AGG | 0.663612 | 6_3:-30061059 | Msa0947410:three_prime_UTR |
| GATTACCTTGATCATGCAAG+TGG | 0.664617 | 6_3:+30061596 | None:intergenic |
| GATCTGCACTTCTCACCAAG+TGG | 0.671647 | 6_3:+30060807 | None:intergenic |
| AAGTGGATGATCAGCCTGTG+TGG | 0.676233 | 6_3:+30060824 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTTATAAAAAAATTA+TGG | - | chr6_3:30065115-30065134 | Msa0947410:intron | 0.0% |
| !!! | AGTTTAAAATTTATTTTGAA+AGG | + | chr6_3:30064314-30064333 | None:intergenic | 10.0% |
| !! | ATAAATAATTAAAATTTCTC+GGG | - | chr6_3:30064680-30064699 | Msa0947410:intron | 10.0% |
| !!! | AATATTTTTAATTCTTGATT+TGG | + | chr6_3:30064921-30064940 | None:intergenic | 10.0% |
| !!! | TTTGTTTAAAGTTTTTAATA+GGG | + | chr6_3:30065000-30065019 | None:intergenic | 10.0% |
| !!! | TTTTGTTTAAAGTTTTTAAT+AGG | + | chr6_3:30065001-30065020 | None:intergenic | 10.0% |
| !!! | TAATAATTTTTTACCATTAA+TGG | - | chr6_3:30065238-30065257 | Msa0947410:intron | 10.0% |
| !!! | GAATTTTATACTTAACTAAT+TGG | - | chr6_3:30060536-30060555 | Msa0947410:three_prime_UTR | 15.0% |
| !! | ATGACTATTAAAATATTGTA+TGG | + | chr6_3:30060772-30060791 | None:intergenic | 15.0% |
| !! | ATGTCATATTTATATACAAA+TGG | + | chr6_3:30060833-30060852 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTTTTTTGATG+TGG | - | chr6_3:30061294-30061313 | Msa0947410:intron | 15.0% |
| !!! | TTTTGTTTTTTTTTTGATGT+GGG | - | chr6_3:30061295-30061314 | Msa0947410:intron | 15.0% |
| !!! | TTTTATCAATTGAGATTTTT+TGG | - | chr6_3:30061486-30061505 | Msa0947410:intron | 15.0% |
| !!! | TTTTGATTTGTTTTGATATA+TGG | - | chr6_3:30061561-30061580 | Msa0947410:intron | 15.0% |
| !! | TCTTAATCTATAAAAATTTG+CGG | - | chr6_3:30061794-30061813 | Msa0947410:intron | 15.0% |
| !!! | TATTATTTTTAGCTTGAATA+TGG | - | chr6_3:30062078-30062097 | Msa0947410:intron | 15.0% |
| !! | ATTATTAAGAGATAAAATAG+AGG | - | chr6_3:30062276-30062295 | Msa0947410:intron | 15.0% |
| !!! | ACTTAAAAAAATGAAAGTAT+TGG | + | chr6_3:30062640-30062659 | None:intergenic | 15.0% |
| !! | TATAGTAAAAATTTCATTGT+AGG | - | chr6_3:30062744-30062763 | Msa0947410:intron | 15.0% |
| !!! | TTATGAATAAAGTATTTAAG+TGG | - | chr6_3:30062874-30062893 | Msa0947410:intron | 15.0% |
| !! | TGAAATTTAAATATGATCTA+TGG | + | chr6_3:30063578-30063597 | None:intergenic | 15.0% |
| !!! | GATTACATTTTTGTTTTTTA+CGG | - | chr6_3:30064739-30064758 | Msa0947410:intron | 15.0% |
| !!! | ATTACATTTTTGTTTTTTAC+GGG | - | chr6_3:30064740-30064759 | Msa0947410:intron | 15.0% |
| !!! | GTGTTATTTTCAATTACTTT+TGG | - | chr6_3:30061004-30061023 | Msa0947410:three_prime_UTR | 20.0% |
| !! | ACAAAATTTAGAAATACTCA+TGG | + | chr6_3:30061053-30061072 | None:intergenic | 20.0% |
| !! | GAGAAAAAAACTTAATATGA+GGG | + | chr6_3:30061238-30061257 | None:intergenic | 20.0% |
| !! | AGAGAAAAAAACTTAATATG+AGG | + | chr6_3:30061239-30061258 | None:intergenic | 20.0% |
| !! | ATGCAAAAAAGAAAAGTAAA+AGG | + | chr6_3:30061424-30061443 | None:intergenic | 20.0% |
| !! | TATTACAAAGATAAGTAAGA+TGG | - | chr6_3:30061659-30061678 | Msa0947410:CDS | 20.0% |
| !! | ATCGTTTAAATCATAATTTC+TGG | - | chr6_3:30061746-30061765 | Msa0947410:intron | 20.0% |
| !! | CTTAATCTATAAAAATTTGC+GGG | - | chr6_3:30061795-30061814 | Msa0947410:intron | 20.0% |
| !! | TGTTTAGATAAACAAAATAC+TGG | - | chr6_3:30061976-30061995 | Msa0947410:intron | 20.0% |
| !!! | TATGGTTTTTGATTGTTTTA+TGG | - | chr6_3:30062096-30062115 | Msa0947410:intron | 20.0% |
| !!! | TTAAGGTATAACATCTTTTT+TGG | + | chr6_3:30062427-30062446 | None:intergenic | 20.0% |
| !! | AGAAAATGAAGATGTTAAAT+AGG | - | chr6_3:30062579-30062598 | Msa0947410:intron | 20.0% |
| !! | AATTAATCAAAATCCAAGTT+AGG | + | chr6_3:30063117-30063136 | None:intergenic | 20.0% |
| !!! | AGTTTAGAATCATATGTTAA+TGG | - | chr6_3:30063243-30063262 | Msa0947410:intron | 20.0% |
| !!! | AAAATTTTCTATGTAACCTT+TGG | - | chr6_3:30063276-30063295 | Msa0947410:intron | 20.0% |
| !! | TCACTAAAAATATACCAAAT+TGG | + | chr6_3:30063528-30063547 | None:intergenic | 20.0% |
| !! | TTACTACCAATAAACAATTT+GGG | + | chr6_3:30063769-30063788 | None:intergenic | 20.0% |
| !! | ATTACTACCAATAAACAATT+TGG | + | chr6_3:30063770-30063789 | None:intergenic | 20.0% |
| !!! | CTGAAATTTTACAATGATAT+AGG | - | chr6_3:30063936-30063955 | Msa0947410:intron | 20.0% |
| !!! | TTTTAATTTTTATGCAACCA+AGG | + | chr6_3:30064259-30064278 | None:intergenic | 20.0% |
| !! | AATGCTATTGAATATACAAA+TGG | - | chr6_3:30064435-30064454 | Msa0947410:intron | 20.0% |
| !! | TTACATATCTTGTATAGAAT+TGG | - | chr6_3:30064487-30064506 | Msa0947410:intron | 20.0% |
| !!! | TTACATTTTTGTTTTTTACG+GGG | - | chr6_3:30064741-30064760 | Msa0947410:intron | 20.0% |
| !! | CTATTCTTAGAAATAATGAT+GGG | - | chr6_3:30064957-30064976 | Msa0947410:intron | 20.0% |
| !! | AAATAGCTCCATTTATATAA+GGG | - | chr6_3:30065074-30065093 | Msa0947410:intron | 20.0% |
| !! | AATCAAAACCCTTATATAAA+TGG | + | chr6_3:30065085-30065104 | None:intergenic | 20.0% |
| ! | CTTTATGCTTGATTCAAATT+AGG | - | chr6_3:30060497-30060516 | Msa0947410:three_prime_UTR | 25.0% |
| ! | TCAAATTAGGTTATGTAGTT+AGG | - | chr6_3:30060510-30060529 | Msa0947410:three_prime_UTR | 25.0% |
| ! | CAAATTAGGTTATGTAGTTA+GGG | - | chr6_3:30060511-30060530 | Msa0947410:three_prime_UTR | 25.0% |
| ! | AAGTACTTCCATTAAATTGT+CGG | + | chr6_3:30060963-30060982 | None:intergenic | 25.0% |
| ! | TAATTCATTTCCAAGTTCAA+TGG | + | chr6_3:30061191-30061210 | None:intergenic | 25.0% |
| ! | ATTCCTTTGTAAATTTCAGT+TGG | - | chr6_3:30061357-30061376 | Msa0947410:intron | 25.0% |
| ! | TTCCTTTGTAAATTTCAGTT+GGG | - | chr6_3:30061358-30061377 | Msa0947410:intron | 25.0% |
| ! | AAAAGGTTTGACATGAAAAA+TGG | + | chr6_3:30061407-30061426 | None:intergenic | 25.0% |
| ! | TCTCTAAATTGACAAGTTTA+AGG | + | chr6_3:30062444-30062463 | None:intergenic | 25.0% |
| ! | TTAAACTTGTCAATTTAGAG+AGG | - | chr6_3:30062443-30062462 | Msa0947410:intron | 25.0% |
| ! | TATCATATGCCTTCATAATA+CGG | - | chr6_3:30062469-30062488 | Msa0947410:intron | 25.0% |
| ! | ATCTCATATCTAATCTTTCA+TGG | - | chr6_3:30062690-30062709 | Msa0947410:intron | 25.0% |
| ! | ATGAAAGGATTCATAATCTT+TGG | - | chr6_3:30062968-30062987 | Msa0947410:intron | 25.0% |
| !! | TATGTAACCTTTGGTTTATT+TGG | - | chr6_3:30063285-30063304 | Msa0947410:intron | 25.0% |
| !!! | AGGTAATAAAAGTACCAATT+TGG | - | chr6_3:30063511-30063530 | Msa0947410:intron | 25.0% |
| ! | GATAACAAAGGATTACATAA+AGG | - | chr6_3:30063972-30063991 | Msa0947410:intron | 25.0% |
| ! | ATTACATAAAGGAGAGAATA+TGG | - | chr6_3:30063983-30064002 | Msa0947410:intron | 25.0% |
| ! | AAAGGATCATATGATATGTT+GGG | + | chr6_3:30064125-30064144 | None:intergenic | 25.0% |
| ! | AAAAGGATCATATGATATGT+TGG | + | chr6_3:30064126-30064145 | None:intergenic | 25.0% |
| ! | AGTAAATTGAATTGGACAAA+AGG | + | chr6_3:30064143-30064162 | None:intergenic | 25.0% |
| ! | AGTTCTACATAATTGAAGTT+TGG | + | chr6_3:30064215-30064234 | None:intergenic | 25.0% |
| !!! | TTCTAATTGTTGTGTTGTTT+TGG | - | chr6_3:30064345-30064364 | Msa0947410:intron | 25.0% |
| !! | TGATCTAAAATTGATGATAC+AGG | + | chr6_3:30064558-30064577 | None:intergenic | 25.0% |
| !!! | CCATCATTATTTCTAAGAAT+AGG | + | chr6_3:30064959-30064978 | None:intergenic | 25.0% |
| ! | CCTATTCTTAGAAATAATGA+TGG | - | chr6_3:30064956-30064975 | Msa0947410:intron | 25.0% |
| !!! | AATAATGATGGGTTATTAAG+CGG | - | chr6_3:30064968-30064987 | Msa0947410:intron | 25.0% |
| !! | TTAAAGTTTTTAATAGGGAG+TGG | + | chr6_3:30064995-30065014 | None:intergenic | 25.0% |
| ! | GAAATAGCTCCATTTATATA+AGG | - | chr6_3:30065073-30065092 | Msa0947410:intron | 25.0% |
| ! | CATTAATGTCATTCCATTAA+TGG | + | chr6_3:30065254-30065273 | None:intergenic | 25.0% |
| TTGTAAGCTTGGAAACATAT+TGG | - | chr6_3:30060603-30060622 | Msa0947410:three_prime_UTR | 30.0% | |
| TTGTATGGTACTTACAGTTT+AGG | + | chr6_3:30060757-30060776 | None:intergenic | 30.0% | |
| GTCAAAAAACTCTTCATGAA+TGG | + | chr6_3:30060939-30060958 | None:intergenic | 30.0% | |
| AGTACTTCCATTAAATTGTC+GGG | + | chr6_3:30060962-30060981 | None:intergenic | 30.0% | |
| !! | TTAATGGAAGTACTTTCATG+AGG | - | chr6_3:30060968-30060987 | Msa0947410:three_prime_UTR | 30.0% |
| ! | TGTTTTGTGAAACTTTTAGC+AGG | - | chr6_3:30061070-30061089 | Msa0947410:three_prime_UTR | 30.0% |
| ATAATGAGACAAAGTTCAAG+AGG | - | chr6_3:30061116-30061135 | Msa0947410:three_prime_UTR | 30.0% | |
| TAATGAGACAAAGTTCAAGA+GGG | - | chr6_3:30061117-30061136 | Msa0947410:three_prime_UTR | 30.0% | |
| !!! | TTTTTTTGATGTGGGAGAAA+TGG | - | chr6_3:30061303-30061322 | Msa0947410:intron | 30.0% |
| ! | AAATGGTTACTTTGAACACA+AGG | + | chr6_3:30061390-30061409 | None:intergenic | 30.0% |
| ! | TAATTTCTGGAGACATCTTA+TGG | - | chr6_3:30061759-30061778 | Msa0947410:intron | 30.0% |
| TTACAGTGATACTGTGTATT+TGG | + | chr6_3:30061918-30061937 | None:intergenic | 30.0% | |
| TAGTGCAAAACAGAGTTATA+TGG | + | chr6_3:30062196-30062215 | None:intergenic | 30.0% | |
| AACTCTCAATGTAGAAAAGA+TGG | - | chr6_3:30062300-30062319 | Msa0947410:intron | 30.0% | |
| !! | TCTTAGGTGATTTGGTTATT+CGG | - | chr6_3:30062333-30062352 | Msa0947410:intron | 30.0% |
| ATCATATGCCTTCATAATAC+GGG | - | chr6_3:30062470-30062489 | Msa0947410:intron | 30.0% | |
| TTCCATCTGCATAAATGAAT+AGG | - | chr6_3:30062494-30062513 | Msa0947410:intron | 30.0% | |
| ATCCTATTCATTTATGCAGA+TGG | + | chr6_3:30062499-30062518 | None:intergenic | 30.0% | |
| ! | GTGGAAGTTTTCTTCTTTAT+TGG | - | chr6_3:30062893-30062912 | Msa0947410:intron | 30.0% |
| AATGATCAAGAAGAGATGAA+AGG | - | chr6_3:30062953-30062972 | Msa0947410:intron | 30.0% | |
| ! | AGGATTCATAATCTTTGGAA+TGG | - | chr6_3:30062973-30062992 | Msa0947410:intron | 30.0% |
| ! | GCTTTTATACTGCACTATAA+AGG | + | chr6_3:30063392-30063411 | None:intergenic | 30.0% |
| AGTGCAGTATAAAAGCTTAT+TGG | - | chr6_3:30063396-30063415 | Msa0947410:intron | 30.0% | |
| TTTCAGTTTGAATCTTGTGT+AGG | - | chr6_3:30063668-30063687 | Msa0947410:intron | 30.0% | |
| TTCAGTTTGAATCTTGTGTA+GGG | - | chr6_3:30063669-30063688 | Msa0947410:intron | 30.0% | |
| CTAATGATTAAGTAATCAGC+AGG | + | chr6_3:30063729-30063748 | None:intergenic | 30.0% | |
| AAGTTGCCCAAATTGTTTAT+TGG | - | chr6_3:30063760-30063779 | Msa0947410:intron | 30.0% | |
| GAAACACAATGCAAAACATT+TGG | - | chr6_3:30063819-30063838 | Msa0947410:intron | 30.0% | |
| TACAATGATATAGGAGATTG+TGG | - | chr6_3:30063945-30063964 | Msa0947410:intron | 30.0% | |
| GATTGTGGTAAAGATAACAA+AGG | - | chr6_3:30063960-30063979 | Msa0947410:intron | 30.0% | |
| !! | AAGAAAGCACCTGTTATTTA+TGG | - | chr6_3:30064018-30064037 | Msa0947410:intron | 30.0% |
| !! | AGAAAGCACCTGTTATTTAT+GGG | - | chr6_3:30064019-30064038 | Msa0947410:intron | 30.0% |
| TCCAATTCAATTTACTGCTA+TGG | - | chr6_3:30064147-30064166 | Msa0947410:intron | 30.0% | |
| ACCATAGCAGTAAATTGAAT+TGG | + | chr6_3:30064151-30064170 | None:intergenic | 30.0% | |
| GTTAAACTACATTTACACCT+TGG | - | chr6_3:30064239-30064258 | Msa0947410:intron | 30.0% | |
| ! | AACCAACAACTTTTCTCATT+GGG | + | chr6_3:30064517-30064536 | None:intergenic | 30.0% |
| ! | AAACCAACAACTTTTCTCAT+TGG | + | chr6_3:30064518-30064537 | None:intergenic | 30.0% |
| ! | TCTAAAATTGATGATACAGG+TGG | + | chr6_3:30064555-30064574 | None:intergenic | 30.0% |
| ! | AAAATTTCTCGGGCTTTATA+TGG | - | chr6_3:30064690-30064709 | Msa0947410:intron | 30.0% |
| !!! | ATTTTTGTTTTTTACGGGGA+AGG | - | chr6_3:30064745-30064764 | Msa0947410:intron | 30.0% |
| ! | TAATCTGGCTTAACATAGAA+AGG | - | chr6_3:30064769-30064788 | Msa0947410:intron | 30.0% |
| !! | ATAATGATGGGTTATTAAGC+GGG | - | chr6_3:30064969-30064988 | Msa0947410:intron | 30.0% |
| !! | TGAACCTCTAGGATATATCT+GGG | - | chr6_3:30060563-30060582 | Msa0947410:three_prime_UTR | 35.0% |
| GAATGACACAATGGACAAAA+TGG | + | chr6_3:30060677-30060696 | None:intergenic | 35.0% | |
| ACACATCATGAATGACACAA+TGG | + | chr6_3:30060686-30060705 | None:intergenic | 35.0% | |
| TCTACCAAAACAATCTGATC+TGG | + | chr6_3:30060908-30060927 | None:intergenic | 35.0% | |
| ! | TTTTGACCCCGACAATTTAA+TGG | - | chr6_3:30060952-30060971 | Msa0947410:three_prime_UTR | 35.0% |
| GTACTTCCATTAAATTGTCG+GGG | + | chr6_3:30060961-30060980 | None:intergenic | 35.0% | |
| CACCCAACTGAAATTTACAA+AGG | + | chr6_3:30061363-30061382 | None:intergenic | 35.0% | |
| ! | TGAGAAACTGTCAAAGTGTT+TGG | - | chr6_3:30061878-30061897 | Msa0947410:intron | 35.0% |
| ! | ACTGTCAAAGTGTTTGGTTA+TGG | - | chr6_3:30061884-30061903 | Msa0947410:intron | 35.0% |
| ! | CTGTCAAAGTGTTTGGTTAT+GGG | - | chr6_3:30061885-30061904 | Msa0947410:intron | 35.0% |
| AATGAGAGAGAACTCAAAAG+AGG | + | chr6_3:30062006-30062025 | None:intergenic | 35.0% | |
| !! | AGATGGTAGAGTATTGTCTT+AGG | - | chr6_3:30062317-30062336 | Msa0947410:intron | 35.0% |
| ! | GAGTATTGTCTTAGGTGATT+TGG | - | chr6_3:30062325-30062344 | Msa0947410:intron | 35.0% |
| !! | CTTAGGTGATTTGGTTATTC+GGG | - | chr6_3:30062334-30062353 | Msa0947410:intron | 35.0% |
| !! | TTAGGTGATTTGGTTATTCG+GGG | - | chr6_3:30062335-30062354 | Msa0947410:intron | 35.0% |
| AGATACTGTTAACTCTCTCT+TGG | + | chr6_3:30062402-30062421 | None:intergenic | 35.0% | |
| AGAAAGAGCAAGTCATTTCA+TGG | - | chr6_3:30062663-30062682 | Msa0947410:intron | 35.0% | |
| TTGACCACAAATGTCATAGT+TGG | - | chr6_3:30063006-30063025 | Msa0947410:intron | 35.0% | |
| TGACCACAAATGTCATAGTT+GGG | - | chr6_3:30063007-30063026 | Msa0947410:intron | 35.0% | |
| ATACCCAACTATGACATTTG+TGG | + | chr6_3:30063013-30063032 | None:intergenic | 35.0% | |
| ATCAAAATCCAAGTTAGGCA+AGG | + | chr6_3:30063112-30063131 | None:intergenic | 35.0% | |
| GCATAGAGATAAAAGACATC+AGG | + | chr6_3:30063314-30063333 | None:intergenic | 35.0% | |
| CTATAAAGGACTTTGTAGGA+AGG | + | chr6_3:30063378-30063397 | None:intergenic | 35.0% | |
| TGCACTATAAAGGACTTTGT+AGG | + | chr6_3:30063382-30063401 | None:intergenic | 35.0% | |
| TAAACTGCATAACTGACATG+AGG | - | chr6_3:30063491-30063510 | Msa0947410:intron | 35.0% | |
| ! | AAATGTGAGTATTGTGCGTT+GGG | + | chr6_3:30063869-30063888 | None:intergenic | 35.0% |
| !! | TAAGAAGGCACTTCTAAAGA+GGG | + | chr6_3:30063905-30063924 | None:intergenic | 35.0% |
| TCAGCATTGTATCAGTAAGA+AGG | + | chr6_3:30063920-30063939 | None:intergenic | 35.0% | |
| AAGGAGAGAATATGGCATAA+AGG | - | chr6_3:30063991-30064010 | Msa0947410:intron | 35.0% | |
| GCTTTCTTCCCATAAATAAC+AGG | + | chr6_3:30064030-30064049 | None:intergenic | 35.0% | |
| AGAGCTACTCATCAAATTTC+AGG | + | chr6_3:30064054-30064073 | None:intergenic | 35.0% | |
| CAAAGAGGCAAGAAATTACA+TGG | - | chr6_3:30064410-30064429 | Msa0947410:intron | 35.0% | |
| AAACTGCTAGCAAACTATGA+AGG | - | chr6_3:30064591-30064610 | Msa0947410:CDS | 35.0% | |
| AACTGCTAGCAAACTATGAA+GGG | - | chr6_3:30064592-30064611 | Msa0947410:CDS | 35.0% | |
| GCTTTATATGGAGAAGGTAA+GGG | - | chr6_3:30064702-30064721 | Msa0947410:intron | 35.0% | |
| ! | ACATAGAAAGGCTTTATACG+AGG | - | chr6_3:30064781-30064800 | Msa0947410:intron | 35.0% |
| ! | CATAGAAAGGCTTTATACGA+GGG | - | chr6_3:30064782-30064801 | Msa0947410:intron | 35.0% |
| !! | TAATTGGCTTGTGAACCTCT+AGG | - | chr6_3:30060552-30060571 | Msa0947410:three_prime_UTR | 40.0% |
| !! | GTGAACCTCTAGGATATATC+TGG | - | chr6_3:30060562-30060581 | Msa0947410:three_prime_UTR | 40.0% |
| TCATTCATGATGTGTGTGTG+TGG | - | chr6_3:30060691-30060710 | Msa0947410:three_prime_UTR | 40.0% | |
| AAACAATCTGATCTGGCATG+TGG | + | chr6_3:30060901-30060920 | None:intergenic | 40.0% | |
| ! | CATGCCAGATCAGATTGTTT+TGG | - | chr6_3:30060901-30060920 | Msa0947410:three_prime_UTR | 40.0% |
| ! | TATCTTGATAGCTACTCGCA+AGG | + | chr6_3:30061165-30061184 | None:intergenic | 40.0% |
| CAAGATACTGCCATTGAACT+TGG | - | chr6_3:30061178-30061197 | Msa0947410:three_prime_UTR | 40.0% | |
| ! | ACTGTACTTTGTTTCGCTCT+TGG | - | chr6_3:30061622-30061641 | Msa0947410:three_prime_UTR | 40.0% |
| ! | AAAGTGTTTAGATAGCAGCC+AGG | + | chr6_3:30061859-30061878 | None:intergenic | 40.0% |
| !! | TAGGTGATTTGGTTATTCGG+GGG | - | chr6_3:30062336-30062355 | Msa0947410:intron | 40.0% |
| TAATCTTTCATGGTACCTGC+AGG | - | chr6_3:30062700-30062719 | Msa0947410:intron | 40.0% | |
| TGTTCAAACCTTGCCTAACT+TGG | - | chr6_3:30063101-30063120 | Msa0947410:intron | 40.0% | |
| !!! | GCTCTAAGATTTTGCAAGCT+TGG | - | chr6_3:30063198-30063217 | Msa0947410:intron | 40.0% |
| CAGGCATCCAAATAAACCAA+AGG | + | chr6_3:30063295-30063314 | None:intergenic | 40.0% | |
| TAGTTGAGGGAGAACTTGAA+AGG | - | chr6_3:30063437-30063456 | Msa0947410:intron | 40.0% | |
| GGGAGAACTTGAAAGGAAAA+TGG | - | chr6_3:30063444-30063463 | Msa0947410:intron | 40.0% | |
| TATGCAGTTTAGCACTCTCA+TGG | + | chr6_3:30063482-30063501 | None:intergenic | 40.0% | |
| TTGAATCTTGTGTAGGGACT+TGG | - | chr6_3:30063675-30063694 | Msa0947410:intron | 40.0% | |
| TGAATCTTGTGTAGGGACTT+GGG | - | chr6_3:30063676-30063695 | Msa0947410:intron | 40.0% | |
| AGTAATCAGCAGGATTGAGT+GGG | + | chr6_3:30063719-30063738 | None:intergenic | 40.0% | |
| AAGTAATCAGCAGGATTGAG+TGG | + | chr6_3:30063720-30063739 | None:intergenic | 40.0% | |
| ! | AATGTGAGTATTGTGCGTTG+GGG | + | chr6_3:30063868-30063887 | None:intergenic | 40.0% |
| ! | GAAATGTGAGTATTGTGCGT+TGG | + | chr6_3:30063870-30063889 | None:intergenic | 40.0% |
| !! | GTAAGAAGGCACTTCTAAAG+AGG | + | chr6_3:30063906-30063925 | None:intergenic | 40.0% |
| GATTACCTTGATCATGCAAG+TGG | + | chr6_3:30064093-30064112 | None:intergenic | 40.0% | |
| ! | GAAGTTTGGAAGCATGTTTG+TGG | + | chr6_3:30064201-30064220 | None:intergenic | 40.0% |
| !! | GTAACTTCAACTTGCTGCTA+TGG | - | chr6_3:30064369-30064388 | Msa0947410:intron | 40.0% |
| GTCCCAATGAGAAAAGTTGT+TGG | - | chr6_3:30064512-30064531 | Msa0947410:CDS | 40.0% | |
| TGATAAGGGTTCAAGTAGGA+TGG | - | chr6_3:30064631-30064650 | Msa0947410:intron | 40.0% | |
| ! | GGCTTTATATGGAGAAGGTA+AGG | - | chr6_3:30064701-30064720 | Msa0947410:intron | 40.0% |
| ! | TTTTACGGGGAAGGTTAATC+TGG | - | chr6_3:30064754-30064773 | Msa0947410:intron | 40.0% |
| ! | TGATTTGGCCATTTAAGACC+AGG | + | chr6_3:30064906-30064925 | None:intergenic | 40.0% |
| TTCTTAACCATTTGCCCTGA+AGG | - | chr6_3:30065186-30065205 | Msa0947410:intron | 40.0% | |
| ATTGCTAATCAGTGCCTTCA+GGG | + | chr6_3:30065203-30065222 | None:intergenic | 40.0% | |
| TATTGCTAATCAGTGCCTTC+AGG | + | chr6_3:30065204-30065223 | None:intergenic | 40.0% | |
| CTCACCCAGATATATCCTAG+AGG | + | chr6_3:30060570-30060589 | None:intergenic | 45.0% | |
| CTAGGATATATCTGGGTGAG+TGG | - | chr6_3:30060570-30060589 | Msa0947410:three_prime_UTR | 45.0% | |
| GTTTCCAAGCTTACAAACCC+TGG | + | chr6_3:30060599-30060618 | None:intergenic | 45.0% | |
| ATCTTCCTAGCAAAGCGAGA+TGG | + | chr6_3:30060652-30060671 | None:intergenic | 45.0% | |
| TGGCATGTGGTAATCAGATC+TGG | + | chr6_3:30060888-30060907 | None:intergenic | 45.0% | |
| TGAGACAAAGTTCAAGAGGG+TGG | - | chr6_3:30061120-30061139 | Msa0947410:three_prime_UTR | 45.0% | |
| GAGACAAAGTTCAAGAGGGT+GGG | - | chr6_3:30061121-30061140 | Msa0947410:three_prime_UTR | 45.0% | |
| GATGGAAGCCCGTATTATGA+AGG | + | chr6_3:30062481-30062500 | None:intergenic | 45.0% | |
| CAATTGCTTGATTGTCCTGC+AGG | + | chr6_3:30062718-30062737 | None:intergenic | 45.0% | |
| CATGCACTGCTTGTAGTTGA+GGG | - | chr6_3:30063424-30063443 | Msa0947410:intron | 45.0% | |
| GCAAGTGGTGAACTCTAAAC+AGG | + | chr6_3:30064078-30064097 | None:intergenic | 45.0% | |
| GTTCACCACTTGCATGATCA+AGG | - | chr6_3:30064085-30064104 | Msa0947410:intron | 45.0% | |
| CTTGCTGCTATGGAATCCTA+CGG | - | chr6_3:30064379-30064398 | Msa0947410:intron | 45.0% | |
| TGCTATGGAATCCTACGGAT+TGG | - | chr6_3:30064384-30064403 | Msa0947410:intron | 45.0% | |
| AAACTATGAAGGGCTTCAGC+TGG | - | chr6_3:30064602-30064621 | Msa0947410:intron | 45.0% | |
| TTCAGCTGGATGGCATGATA+AGG | - | chr6_3:30064616-30064635 | Msa0947410:intron | 45.0% | |
| TCAGCTGGATGGCATGATAA+GGG | - | chr6_3:30064617-30064636 | Msa0947410:intron | 45.0% | |
| GGCATGATAAGGGTTCAAGT+AGG | - | chr6_3:30064627-30064646 | Msa0947410:intron | 45.0% | |
| ! | TCTCGGGCTTTATATGGAGA+AGG | - | chr6_3:30064696-30064715 | Msa0947410:intron | 45.0% |
| !! | GCAGATCACCTGGTCTTAAA+TGG | - | chr6_3:30064895-30064914 | Msa0947410:intron | 45.0% |
| ! | TTCGCTGATGTGGCATTTTG+TGG | + | chr6_3:30065042-30065061 | None:intergenic | 45.0% |
| AAGCAACTGTTTCGCTGATG+TGG | + | chr6_3:30065052-30065071 | None:intergenic | 45.0% | |
| !! | AATAAATAATTAAAATTTCT+CGG | - | chr6_3:30064679-30064698 | Msa0947410:intron | 5.0% |
| !! | AAGAATTAAAAATATTAATT+AGG | - | chr6_3:30064925-30064944 | Msa0947410:intron | 5.0% |
| !! | AAATTATTAAAAAAAAGTTA+GGG | + | chr6_3:30065227-30065246 | None:intergenic | 5.0% |
| !! | AAAATTATTAAAAAAAAGTT+AGG | + | chr6_3:30065228-30065247 | None:intergenic | 5.0% |
| GCTTCCAGGGTTTGTAAGCT+TGG | - | chr6_3:30060592-30060611 | Msa0947410:three_prime_UTR | 50.0% | |
| TCATGCCATCTCGCTTTGCT+AGG | - | chr6_3:30060644-30060663 | Msa0947410:three_prime_UTR | 50.0% | |
| TCATGATGTGTGTGTGTGGC+AGG | - | chr6_3:30060695-30060714 | Msa0947410:three_prime_UTR | 50.0% | |
| !! | CAAGAGGGTGGGTGTTTTTG+TGG | - | chr6_3:30061132-30061151 | Msa0947410:three_prime_UTR | 50.0% |
| TGCTTGCTTACATGCTTGCC+TGG | - | chr6_3:30061838-30061857 | Msa0947410:intron | 50.0% | |
| !! | GTGATTTGGTTATTCGGGGG+AGG | - | chr6_3:30062339-30062358 | Msa0947410:intron | 50.0% |
| ATTCGGGGGAGGAAACTTGT+AGG | - | chr6_3:30062350-30062369 | Msa0947410:intron | 50.0% | |
| CCTCAACTACAAGCAGTGCA+TGG | + | chr6_3:30063426-30063445 | None:intergenic | 50.0% | |
| CCATGCACTGCTTGTAGTTG+AGG | - | chr6_3:30063423-30063442 | Msa0947410:intron | 50.0% | |
| CCTCTTTGTCTCCAATCCGT+AGG | + | chr6_3:30064398-30064417 | None:intergenic | 50.0% | |
| !! | CCTACGGATTGGAGACAAAG+AGG | - | chr6_3:30064395-30064414 | Msa0947410:intron | 50.0% |
| TATGAAGGGCTTCAGCTGGA+TGG | - | chr6_3:30064606-30064625 | Msa0947410:intron | 50.0% | |
| ! | CTGTGTGGATTGTCAGAAGG+CGG | + | chr6_3:30064850-30064869 | None:intergenic | 50.0% |
| ! | AGCCTGTGTGGATTGTCAGA+AGG | + | chr6_3:30064853-30064872 | None:intergenic | 50.0% |
| AAGTGGATGATCAGCCTGTG+TGG | + | chr6_3:30064865-30064884 | None:intergenic | 50.0% | |
| ACACAGGCTGATCATCCACT+TGG | - | chr6_3:30064864-30064883 | Msa0947410:intron | 50.0% | |
| GATCTGCACTTCTCACCAAG+TGG | + | chr6_3:30064882-30064901 | None:intergenic | 50.0% | |
| ATCAGTGCCTTCAGGGCAAA+TGG | + | chr6_3:30065196-30065215 | None:intergenic | 50.0% | |
| TATCTGGGTGAGTGGCTTCC+AGG | - | chr6_3:30060578-30060597 | Msa0947410:three_prime_UTR | 55.0% | |
| ATCTGGGTGAGTGGCTTCCA+GGG | - | chr6_3:30060579-30060598 | Msa0947410:three_prime_UTR | 55.0% | |
| TGATGTGTGTGTGTGGCAGG+AGG | - | chr6_3:30060698-30060717 | Msa0947410:three_prime_UTR | 55.0% | |
| GTGTGTGTGGCAGGAGGATA+TGG | - | chr6_3:30060704-30060723 | Msa0947410:three_prime_UTR | 55.0% | |
| GATTGTCAGAAGGCGGCAGA+GGG | + | chr6_3:30064843-30064862 | None:intergenic | 55.0% | |
| CGCCTTCTGACAATCCACAC+AGG | - | chr6_3:30064848-30064867 | Msa0947410:intron | 55.0% | |
| ! | GGTGAGAAGTGCAGATCACC+TGG | - | chr6_3:30064885-30064904 | Msa0947410:intron | 55.0% |
| GGATTGTCAGAAGGCGGCAG+AGG | + | chr6_3:30064844-30064863 | None:intergenic | 60.0% | |
| AGAAGGCGGCAGAGGGCAGA+AGG | + | chr6_3:30064836-30064855 | None:intergenic | 65.0% | |
| GCGGCAGAGGGCAGAAGGTG+TGG | + | chr6_3:30064831-30064850 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 30060418 | 30065290 | 30060418 | ID=Msa0947410;Name=Msa0947410 |
| chr6_3 | mRNA | 30060418 | 30065290 | 30060418 | ID=Msa0947410-mRNA-1;Parent=Msa0947410;Name=Msa0947410-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0.33|0.75|0.75|0|0|4|920|76 |
| chr6_3 | exon | 30060418 | 30061293 | 30060418 | ID=Msa0947410-mRNA-1:exon:7981;Parent=Msa0947410-mRNA-1 |
| chr6_3 | exon | 30061602 | 30061750 | 30061602 | ID=Msa0947410-mRNA-1:exon:7980;Parent=Msa0947410-mRNA-1 |
| chr6_3 | exon | 30064498 | 30064616 | 30064498 | ID=Msa0947410-mRNA-1:exon:7979;Parent=Msa0947410-mRNA-1 |
| chr6_3 | exon | 30065284 | 30065290 | 30065284 | ID=Msa0947410-mRNA-1:exon:7978;Parent=Msa0947410-mRNA-1 |
| chr6_3 | CDS | 30065284 | 30065290 | 30065284 | ID=Msa0947410-mRNA-1:cds;Parent=Msa0947410-mRNA-1 |
| chr6_3 | CDS | 30064498 | 30064616 | 30064498 | ID=Msa0947410-mRNA-1:cds;Parent=Msa0947410-mRNA-1 |
| chr6_3 | CDS | 30061646 | 30061750 | 30061646 | ID=Msa0947410-mRNA-1:cds;Parent=Msa0947410-mRNA-1 |
| chr6_3 | three_prime_UTR | 30061602 | 30061645 | 30061602 | ID=Msa0947410-mRNA-1:three_prime_utr;Parent=Msa0947410-mRNA-1 |
| chr6_3 | three_prime_UTR | 30060418 | 30061293 | 30060418 | ID=Msa0947410-mRNA-1:three_prime_utr;Parent=Msa0947410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
