AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1197580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197580 MtrunA17_Chr5g0410921 83.966 474 76 0 10 483 14 487 0.0 842
Msa1197580 MtrunA17_Chr5g0410921 34.783 483 300 8 6 483 648 1120 5.85e-78 265
Msa1197580 MtrunA17_Chr8g0366451 96.860 414 13 0 70 483 33 446 0.0 828
Msa1197580 MtrunA17_Chr6g0453051 50.734 477 235 0 7 483 18 494 3.46e-176 528
Msa1197580 MtrunA17_Chr6g0453051 30.754 491 325 5 1 482 654 1138 1.24e-69 241
Msa1197580 MtrunA17_Chr7g0264631 48.827 469 240 0 15 483 89 557 1.26e-157 482
Msa1197580 MtrunA17_Chr7g0264631 31.545 466 305 6 24 482 753 1211 8.76e-68 236
Msa1197580 MtrunA17_Chr1g0180601 49.683 473 238 0 11 483 58 530 5.48e-157 480
Msa1197580 MtrunA17_Chr1g0180601 31.116 466 307 6 24 482 727 1185 1.14e-62 221
Msa1197580 MtrunA17_Chr1g0194031 42.437 476 274 0 7 482 39 514 3.99e-134 410
Msa1197580 MtrunA17_Chr2g0285311 42.797 479 272 1 9 487 28 504 5.37e-133 416
Msa1197580 MtrunA17_Chr2g0285311 33.056 481 309 6 9 482 682 1156 8.06e-73 251
Msa1197580 MtrunA17_Chr4g0069401 44.280 472 262 1 11 482 33 503 1.12e-131 412
Msa1197580 MtrunA17_Chr4g0069401 33.612 479 312 4 6 482 691 1165 2.84e-78 266
Msa1197580 MtrunA17_Chr1g0193991 42.647 476 273 0 7 482 44 519 4.30e-131 411
Msa1197580 MtrunA17_Chr1g0193991 32.780 482 310 7 7 482 702 1175 1.95e-62 221
Msa1197580 MtrunA17_Chr3g0119381 41.529 484 278 3 3 482 47 529 1.40e-129 407
Msa1197580 MtrunA17_Chr3g0119381 32.568 479 309 7 10 482 718 1188 3.53e-66 232
Msa1197580 MtrunA17_Chr4g0069351 42.405 474 271 1 9 482 37 508 4.28e-129 405
Msa1197580 MtrunA17_Chr4g0069351 32.988 482 317 4 3 482 690 1167 6.84e-75 257
Msa1197580 MtrunA17_Chr1g0156821 46.473 482 257 1 2 483 23 503 2.43e-128 403
Msa1197580 MtrunA17_Chr1g0156821 32.189 466 291 7 30 483 673 1125 2.00e-78 266
Msa1197580 MtrunA17_Chr4g0069411 43.460 474 267 1 9 482 54 526 2.80e-128 404
Msa1197580 MtrunA17_Chr4g0069411 30.977 481 324 5 5 482 706 1181 1.35e-67 236
Msa1197580 MtrunA17_Chr2g0285301 42.797 479 267 2 9 482 18 494 3.93e-128 402
Msa1197580 MtrunA17_Chr2g0285301 33.333 459 293 6 30 482 701 1152 3.91e-74 254
Msa1197580 MtrunA17_Chr4g0069361 41.737 472 273 1 11 482 39 508 8.57e-127 399
Msa1197580 MtrunA17_Chr4g0069361 31.263 483 318 6 6 482 693 1167 1.18e-74 256
Msa1197580 MtrunA17_Chr2g0285191 39.189 518 274 3 9 487 18 533 7.60e-123 389
Msa1197580 MtrunA17_Chr2g0285191 33.623 461 295 5 27 482 730 1184 6.65e-74 254
Msa1197580 MtrunA17_Chr6g0452041 42.340 470 268 3 16 483 24 492 2.18e-121 385
Msa1197580 MtrunA17_Chr6g0452041 31.183 465 299 7 29 482 697 1151 3.52e-64 226
Msa1197580 MtrunA17_Chr1g0212701 41.895 475 264 4 11 483 66 530 2.42e-121 387
Msa1197580 MtrunA17_Chr1g0212701 30.390 487 327 5 3 483 798 1278 6.08e-74 254
Msa1197580 MtrunA17_Chr7g0222781 42.355 484 274 3 11 492 65 545 2.83e-121 387
Msa1197580 MtrunA17_Chr7g0222781 30.041 486 328 5 4 483 807 1286 4.53e-72 249
Msa1197580 MtrunA17_Chr6g0452051 44.608 408 224 2 77 483 7 413 4.05e-121 362
Msa1197580 MtrunA17_Chr6g0452111 42.062 485 278 3 1 483 16 499 3.39e-119 379
Msa1197580 MtrunA17_Chr6g0452111 30.185 487 323 7 6 482 671 1150 1.54e-62 221
Msa1197580 MtrunA17_Chr6g0451911 40.574 488 281 4 1 483 9 492 5.32e-119 378
Msa1197580 MtrunA17_Chr6g0451911 29.913 458 314 6 29 482 692 1146 6.55e-55 199
Msa1197580 MtrunA17_Chr4g0039821 42.227 476 265 3 11 482 37 506 6.08e-119 378
Msa1197580 MtrunA17_Chr4g0039821 33.958 480 301 9 10 482 695 1165 8.07e-77 262
Msa1197580 MtrunA17_Chr6g0451881 42.680 485 275 3 1 483 9 492 4.75e-117 373
Msa1197580 MtrunA17_Chr6g0451881 28.758 459 321 4 28 482 683 1139 2.28e-56 203
Msa1197580 MtrunA17_Chr3g0138211 42.827 474 270 1 9 482 54 526 4.91e-115 368
Msa1197580 MtrunA17_Chr3g0138211 29.839 496 328 6 2 482 679 1169 7.11e-63 222
Msa1197580 MtrunA17_Chr8g0344651 40.756 476 281 1 9 483 254 729 8.37e-115 370
Msa1197580 MtrunA17_Chr8g0344651 32.353 476 289 10 24 483 915 1373 3.29e-65 229
Msa1197580 MtrunA17_Chr6g0481921 45.729 398 216 0 90 487 9 406 4.75e-114 363
Msa1197580 MtrunA17_Chr6g0481921 32.751 458 297 5 30 482 607 1058 4.79e-72 248
Msa1197580 MtrunA17_Chr6g0452171 42.062 485 278 3 1 483 9 492 1.16e-113 364
Msa1197580 MtrunA17_Chr6g0452171 30.042 476 328 3 10 482 679 1152 3.60e-65 229
Msa1197580 MtrunA17_Chr6g0452141 41.064 470 274 3 16 483 25 493 3.03e-113 363
Msa1197580 MtrunA17_Chr6g0452141 30.568 458 311 5 29 482 695 1149 7.99e-63 222
Msa1197580 MtrunA17_Chr7g0233901 41.614 471 270 5 16 483 20 488 5.76e-112 359
Msa1197580 MtrunA17_Chr7g0233901 30.283 459 310 4 30 482 674 1128 1.49e-62 221
Msa1197580 MtrunA17_Chr4g0041871 38.983 472 281 3 16 483 6 474 1.37e-107 347
Msa1197580 MtrunA17_Chr4g0041871 30.435 460 308 6 30 483 684 1137 3.51e-62 220
Msa1197580 MtrunA17_Chr6g0486841 39.958 473 276 5 16 483 21 490 1.25e-99 325
Msa1197580 MtrunA17_Chr6g0486841 31.087 460 306 4 30 483 679 1133 3.98e-72 249
Msa1197580 MtrunA17_Chr3g0128391 39.949 393 233 3 96 487 1 391 5.43e-98 306
Msa1197580 MtrunA17_Chr3g0123411 40.945 381 221 2 106 483 1 380 2.21e-80 271
Msa1197580 MtrunA17_Chr3g0123411 31.343 469 308 7 20 482 575 1035 1.07e-64 227
Msa1197580 MtrunA17_Chr8g0366481 34.576 483 299 9 7 483 46 517 2.05e-73 244
Msa1197580 MtrunA17_Chr3g0128381 32.181 463 302 5 24 482 66 520 1.92e-70 236
Msa1197580 MtrunA17_Chr6g0452061 29.707 478 320 5 10 482 195 661 7.89e-60 210
Msa1197580 MtrunA17_Chr6g0452071 32.070 343 230 2 142 482 4 345 4.63e-55 191
Msa1197580 MtrunA17_Chr4g0061601 29.095 464 313 8 28 482 62 518 6.80e-53 189
Msa1197580 MtrunA17_Chr1g0194001 39.286 280 163 3 207 482 2 278 9.95e-53 182
Msa1197580 MtrunA17_Chr6g0452081 54.430 158 68 2 326 483 1 154 6.11e-48 165
Msa1197580 MtrunA17_Chr6g0452091 38.389 211 128 2 94 303 32 241 2.95e-46 161
Msa1197580 MtrunA17_Chr5g0412741 32.216 388 246 8 103 482 209 587 7.40e-44 164
Msa1197580 MtrunA17_Chr8g0366441 98.611 72 1 0 1 72 1 72 8.61e-43 146
Msa1197580 MtrunA17_Chr7g0227391 30.513 390 250 11 103 482 178 556 3.13e-40 154
Msa1197580 MtrunA17_Chr6g0474071 44.444 135 73 1 350 482 211 345 1.39e-28 118
Msa1197580 MtrunA17_Chr5g0433051 37.975 158 95 2 325 482 440 594 2.52e-23 103
Msa1197580 MtrunA17_Chr5g0433071 29.474 285 157 10 193 452 301 566 7.20e-21 96.3
Msa1197580 MtrunA17_Chr1g0178481 31.068 206 130 5 285 482 310 511 8.78e-19 89.7
Msa1197580 MtrunA17_Chr1g0183191 24.552 391 267 11 105 482 1037 1412 7.30e-16 81.3
Msa1197580 MtrunA17_Chr3g0101471 23.029 482 303 20 19 466 725 1172 1.78e-14 76.6
Msa1197580 MtrunA17_Chr8g0341851 33.582 134 85 3 350 482 1218 1348 4.82e-14 75.5
Msa1197580 MtrunA17_Chr2g0285731 26.485 404 249 18 105 483 986 1366 4.89e-14 75.5
Msa1197580 MtrunA17_Chr8g0393151 35.577 104 63 1 369 468 35 138 1.14e-13 71.2
Msa1197580 MtrunA17_Chr2g0295911 25.320 391 250 16 111 481 1020 1388 1.20e-13 73.9
Msa1197580 MtrunA17_Chr8g0376961 34.146 123 76 3 349 468 1195 1315 5.19e-13 72.0
Msa1197580 MtrunA17_Chr2g0295901 33.577 137 79 4 350 481 1256 1385 8.73e-13 71.2
Msa1197580 MtrunA17_Chr2g0295921 33.577 137 79 4 350 481 1271 1400 9.88e-13 71.2
Msa1197580 MtrunA17_Chr8g0374191 40.789 76 44 1 203 278 1 75 1.79e-12 63.2
Msa1197580 MtrunA17_Chr8g0337121 24.786 351 237 10 111 448 1018 1354 2.01e-12 70.1
Msa1197580 MtrunA17_Chr2g0285211 30.275 109 70 2 278 383 15 120 3.50e-12 63.5
Msa1197580 MtrunA17_Chr8g0337191 24.501 351 238 10 111 448 998 1334 4.22e-12 68.9
Msa1197580 MtrunA17_Chr6g0463181 23.861 373 219 16 108 448 968 1307 4.70e-12 68.9
Msa1197580 MtrunA17_Chr8g0363771 23.858 394 252 15 111 481 1017 1385 7.23e-12 68.2
Msa1197580 MtrunA17_Chr8g0341761 35.200 125 70 3 362 482 1216 1333 7.31e-12 68.2
Msa1197580 MtrunA17_Chr8g0353781 35.484 124 70 3 364 482 1221 1339 1.38e-11 67.4
Msa1197580 MtrunA17_Chr8g0341751 35.484 124 70 3 364 482 1054 1172 1.45e-11 67.4
Msa1197580 MtrunA17_Chr8g0353541 36.290 124 69 3 364 482 838 956 1.59e-11 67.0
Msa1197580 MtrunA17_Chr7g0262191 23.155 393 270 13 105 482 1037 1412 2.07e-11 67.0
Msa1197580 MtrunA17_Chr3g0085281 31.579 133 89 2 349 481 1218 1348 2.97e-11 66.2
Msa1197580 MtrunA17_Chr8g0359291 23.324 343 217 13 129 448 186 505 4.22e-11 65.5
Msa1197580 MtrunA17_Chr6g0463131 24.103 390 248 15 81 448 961 1324 4.70e-11 65.9
Msa1197580 MtrunA17_Chr6g0463151 38.372 86 52 1 364 448 1056 1141 9.28e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1197580 AT4G25960.1 80.169 474 94 0 10 483 59 532 0.0 805
Msa1197580 AT4G25960.1 33.747 483 305 8 6 483 689 1161 1.06e-76 262
Msa1197580 AT1G10680.1 75.104 482 113 2 5 483 15 492 0.0 753
Msa1197580 AT1G10680.1 33.058 484 307 9 6 483 641 1113 1.99e-75 258
Msa1197580 AT1G10680.2 75.104 482 113 2 5 483 15 492 0.0 753
Msa1197580 AT1G10680.2 33.058 484 307 9 6 483 641 1113 1.55e-75 258
Msa1197580 AT3G28860.1 50.524 477 236 0 7 483 20 496 1.64e-170 514
Msa1197580 AT3G28860.1 31.393 481 323 4 3 482 666 1140 2.04e-67 236
Msa1197580 AT1G27940.1 51.055 474 230 2 11 483 30 502 7.14e-162 491
Msa1197580 AT1G27940.1 31.356 472 299 6 23 483 678 1135 3.96e-73 252
Msa1197580 AT2G36910.1 50.947 475 233 0 9 483 25 499 1.41e-158 484
Msa1197580 AT2G36910.1 31.906 467 302 7 23 482 697 1154 3.50e-63 223
Msa1197580 AT1G28010.1 50.211 474 234 2 11 483 31 503 3.61e-157 479
Msa1197580 AT1G28010.1 31.635 471 299 6 24 483 679 1137 1.57e-70 244
Msa1197580 AT4G01830.1 44.726 474 261 1 9 482 11 483 7.62e-136 423
Msa1197580 AT4G01830.1 32.112 464 299 7 27 482 662 1117 3.77e-69 241
Msa1197580 AT4G18050.1 43.882 474 264 1 9 482 14 485 4.48e-129 405
Msa1197580 AT4G18050.1 33.742 489 281 11 7 482 666 1124 5.42e-68 237
Msa1197580 AT4G18050.2 43.882 474 264 1 9 482 24 495 5.88e-129 405
Msa1197580 AT4G18050.2 33.742 489 281 11 7 482 676 1134 5.99e-68 237
Msa1197580 AT3G62150.3 42.437 476 273 1 7 482 59 533 2.36e-128 404
Msa1197580 AT3G62150.3 33.333 459 299 4 27 482 729 1183 6.13e-77 263
Msa1197580 AT3G62150.2 42.437 476 273 1 7 482 59 533 2.36e-128 404
Msa1197580 AT3G62150.2 33.333 459 299 4 27 482 729 1183 6.13e-77 263
Msa1197580 AT3G62150.1 42.437 476 273 1 7 482 59 533 2.36e-128 404
Msa1197580 AT3G62150.1 33.333 459 299 4 27 482 729 1183 6.13e-77 263
Msa1197580 AT5G46540.1 41.300 477 272 2 9 482 16 487 7.89e-128 402
Msa1197580 AT5G46540.1 33.470 487 300 10 7 482 663 1136 1.71e-68 239
Msa1197580 AT4G01820.2 43.908 476 266 1 7 482 4 478 9.20e-126 390
Msa1197580 AT4G01820.2 23.616 271 201 3 24 292 658 924 1.55e-21 99.0
Msa1197580 AT1G02530.2 43.568 482 271 1 2 483 19 499 1.46e-125 390
Msa1197580 AT1G02530.2 25.283 265 191 4 9 271 687 946 9.25e-21 96.7
Msa1197580 AT3G55320.1 43.451 481 257 5 11 483 71 544 5.44e-125 397
Msa1197580 AT3G55320.1 28.189 486 340 4 2 483 810 1290 1.88e-67 236
Msa1197580 AT1G02520.1 44.280 472 262 1 11 482 41 511 1.39e-124 394
Msa1197580 AT1G02520.1 32.334 467 295 7 27 482 709 1165 3.01e-75 258
Msa1197580 AT1G02520.2 44.280 472 262 1 11 482 41 511 1.39e-124 394
Msa1197580 AT1G02520.2 32.334 467 295 7 27 482 709 1165 3.01e-75 258
Msa1197580 AT1G02520.3 44.280 472 262 1 11 482 41 511 1.39e-124 394
Msa1197580 AT1G02520.3 32.334 467 295 7 27 482 709 1165 3.01e-75 258
Msa1197580 AT2G39480.1 42.041 490 269 4 11 492 69 551 1.66e-123 393
Msa1197580 AT2G39480.1 28.392 479 334 4 9 483 816 1289 3.05e-67 235
Msa1197580 AT4G01820.1 43.908 476 266 1 7 482 4 478 1.78e-123 390
Msa1197580 AT4G01820.1 31.760 466 304 6 24 482 658 1116 6.05e-70 243
Msa1197580 AT1G02530.1 43.568 482 271 1 2 483 19 499 2.60e-123 390
Msa1197580 AT1G02530.1 32.365 482 310 7 9 482 687 1160 6.81e-74 254
Msa1197580 AT2G47000.3 41.737 472 272 1 11 482 46 514 2.82e-120 377
Msa1197580 AT2G47000.3 27.236 246 175 2 27 271 719 961 3.13e-26 113
Msa1197580 AT2G47000.7 41.737 472 272 1 11 482 46 514 2.82e-120 377
Msa1197580 AT2G47000.7 27.236 246 175 2 27 271 719 961 3.13e-26 113
Msa1197580 AT2G47000.4 41.737 472 272 1 11 482 46 514 3.04e-119 376
Msa1197580 AT2G47000.4 27.171 357 256 2 27 382 719 1072 3.08e-42 162
Msa1197580 AT2G47000.2 41.737 472 272 1 11 482 46 514 8.92e-119 376
Msa1197580 AT2G47000.2 33.407 452 296 3 27 476 719 1167 1.25e-77 264
Msa1197580 AT3G28390.1 42.004 469 270 2 16 483 11 478 1.67e-118 377
Msa1197580 AT3G28390.1 30.937 459 304 5 31 482 660 1112 1.68e-63 224
Msa1197580 AT2G47000.6 41.737 472 272 1 11 482 46 514 2.03e-118 377
Msa1197580 AT2G47000.6 33.403 476 311 4 9 482 702 1173 1.46e-79 270
Msa1197580 AT2G47000.5 41.737 472 272 1 11 482 46 514 2.03e-118 377
Msa1197580 AT2G47000.5 33.403 476 311 4 9 482 702 1173 1.46e-79 270
Msa1197580 AT2G47000.1 41.737 472 272 1 11 482 46 514 2.03e-118 377
Msa1197580 AT2G47000.1 33.403 476 311 4 9 482 702 1173 1.46e-79 270
Msa1197580 AT3G28415.2 41.578 469 272 2 16 483 10 477 8.21e-115 367
Msa1197580 AT3G28415.2 32.680 459 296 9 31 482 664 1116 5.09e-62 220
Msa1197580 AT3G28345.1 41.365 469 273 2 16 483 23 490 1.12e-114 367
Msa1197580 AT3G28345.1 29.412 476 331 3 10 482 654 1127 1.17e-63 224
Msa1197580 AT3G28380.1 40.938 469 275 2 16 483 23 490 1.40e-113 363
Msa1197580 AT3G28380.1 31.868 455 305 4 31 482 675 1127 6.08e-62 219
Msa1197580 AT3G28360.1 40.638 470 275 4 16 483 10 477 5.44e-110 354
Msa1197580 AT3G28360.1 30.579 484 313 10 11 482 641 1113 4.33e-62 220
Msa1197580 AT3G28415.1 41.102 472 262 4 16 483 10 469 2.03e-109 352
Msa1197580 AT3G28415.1 32.680 459 296 9 31 482 656 1108 4.85e-62 220
Msa1197580 AT2G39480.2 43.048 374 210 2 119 492 1 371 2.15e-92 306
Msa1197580 AT2G39480.2 28.392 479 334 4 9 483 636 1109 3.60e-67 235
Msa1197580 AT1G27940.2 50.883 283 137 2 202 483 7 288 2.59e-87 289
Msa1197580 AT1G27940.2 31.356 472 299 6 23 483 464 921 1.51e-73 251
Msa1197580 AT4G01830.2 32.112 464 299 7 27 482 428 883 1.08e-69 241
Msa1197580 AT4G01830.2 49.393 247 125 0 236 482 3 249 2.08e-69 239
Msa1197580 AT1G70610.2 34.103 390 236 10 103 482 27 405 9.38e-52 184
Msa1197580 AT1G70610.1 34.103 390 236 10 103 482 208 586 1.92e-50 183
Msa1197580 AT5G39040.1 29.777 403 276 4 81 482 131 527 4.49e-45 167
Msa1197580 AT5G39040.2 30.966 352 241 2 100 451 146 495 4.30e-42 157
Msa1197580 AT4G25450.3 26.517 445 258 13 93 482 3 433 1.83e-25 110
Msa1197580 AT4G25450.2 26.484 438 257 12 100 482 175 602 1.94e-25 110
Msa1197580 AT4G25450.1 26.484 438 257 12 100 482 175 602 3.26e-25 110
Msa1197580 AT5G58270.1 29.206 315 179 10 193 482 312 607 5.45e-24 106
Msa1197580 AT4G28620.1 42.361 144 78 2 342 482 426 567 1.70e-22 101
Msa1197580 AT4G28630.1 28.863 343 197 11 171 482 239 565 2.60e-22 101
Msa1197580 AT5G03910.1 37.324 142 84 3 344 482 388 527 7.95e-17 84.0
Msa1197580 AT3G60160.2 26.471 374 228 13 96 448 1003 1350 4.85e-15 79.0
Msa1197580 AT3G60160.1 26.471 374 228 13 96 448 1003 1350 7.87e-15 78.2
Msa1197580 AT3G60160.3 26.471 374 228 13 96 448 967 1314 7.89e-15 78.2
Msa1197580 AT3G21250.4 36.364 132 80 3 351 482 1222 1349 4.31e-14 75.9
Msa1197580 AT3G21250.5 36.364 132 80 3 351 482 1211 1338 4.38e-14 75.9
Msa1197580 AT3G21250.2 36.364 132 80 3 351 482 1216 1343 4.46e-14 75.9
Msa1197580 AT3G21250.1 36.364 132 80 3 351 482 1205 1332 4.49e-14 75.9
Msa1197580 AT3G21250.6 36.364 132 80 3 351 482 800 927 5.01e-14 75.5
Msa1197580 AT3G21250.3 36.364 132 80 3 351 482 800 927 5.01e-14 75.5
Msa1197580 AT1G67940.1 34.615 104 64 1 369 468 44 147 6.12e-14 72.4
Msa1197580 AT1G04120.2 23.583 441 295 14 33 448 940 1363 8.93e-14 74.7
Msa1197580 AT1G04120.3 23.583 441 295 14 33 448 905 1328 9.61e-14 74.7
Msa1197580 AT1G04120.1 23.583 441 295 14 33 448 940 1363 1.00e-13 74.7
Msa1197580 AT3G60970.1 25.779 353 231 12 111 448 561 897 3.05e-13 73.2
Msa1197580 AT2G34660.1 25.610 410 245 19 105 483 991 1371 2.56e-12 70.1
Msa1197580 AT2G34660.2 25.610 410 245 19 105 483 991 1371 2.56e-12 70.1
Msa1197580 AT2G34660.3 25.610 410 245 19 105 483 704 1084 4.12e-12 69.7
Msa1197580 AT2G47800.1 25.862 406 259 15 97 482 1019 1402 3.27e-11 66.6

Find 92 sgRNAs with CRISPR-Local

Find 252 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTTTCTATGAACCAATTTC+TGG 0.163411 8_1:+48229716 Msa1197580:CDS
CATTCCTATCTAACAGAATT+TGG 0.188639 8_1:-48229739 None:intergenic
CTTTATGCATATGTGACTTT+TGG 0.239305 8_1:+48228765 Msa1197580:CDS
GGGAAGCTTCTTTAGGAAAA+AGG 0.251897 8_1:-48225494 None:intergenic
AACAGAATTTGGCCAGAAAT+TGG 0.252801 8_1:-48229728 None:intergenic
TAAGGGAACTTGATCTAAAA+TGG 0.256724 8_1:+48229765 Msa1197580:CDS
TATCATGGGCACTGCTTGTT+TGG 0.263166 8_1:+48229198 Msa1197580:CDS
TTTCTATGATTATGTCTTGA+TGG 0.307017 8_1:+48225377 Msa1197580:CDS
ACTTGGTGGGAAGCTTCTTT+AGG 0.308607 8_1:-48225501 None:intergenic
TGTTAGATAGGAATGATATA+AGG 0.322778 8_1:+48229747 Msa1197580:CDS
GTTCCTTTGATTGCTATTGC+TGG 0.323735 8_1:+48228738 Msa1197580:CDS
TTCTCACTTCTCAGGTCACT+TGG 0.332011 8_1:+48229407 Msa1197580:intron
CTGGCCAAATTCTGTTAGAT+AGG 0.332356 8_1:+48229735 Msa1197580:CDS
TGATGGCTGTTGGATCTGTT+GGG 0.339203 8_1:+48225394 Msa1197580:CDS
TTGATGGCTGTTGGATCTGT+TGG 0.346690 8_1:+48225393 Msa1197580:CDS
CTTGTAGGAGGGAGTGGTTC+AGG 0.348128 8_1:+48229665 Msa1197580:CDS
AAATGGCTTAGACATCAAAT+TGG 0.350547 8_1:+48229782 Msa1197580:CDS
AATTATTAATGTCGTAGGTT+TGG 0.364190 8_1:+48225467 Msa1197580:CDS
TCTGTTGGGGCATGCATTCA+TGG 0.366772 8_1:+48225408 Msa1197580:CDS
TCCTAGACCCTTGGCTAAAC+CGG 0.371821 8_1:-48229147 None:intergenic
GATTCCTTCAGGTAAAGTTT+TGG 0.381383 8_1:+48229640 Msa1197580:CDS
GTGAGAACTGTACAAGCATT+TGG 0.384938 8_1:+48229056 Msa1197580:CDS
AAAGCGCGGTTTAGTTCTTC+AGG 0.408364 8_1:-48229881 None:intergenic
TTGTTGAAAATAACAACATC+AGG 0.416913 8_1:-48229605 None:intergenic
AAATACAAACCTTGGCAACT+TGG 0.422459 8_1:-48225518 None:intergenic
TGCGAAAGCCTTTCCACCAT+TGG 0.429259 8_1:-48229252 None:intergenic
GATTATGTCTTGATGGCTGT+TGG 0.431666 8_1:+48225384 Msa1197580:CDS
ACTTCTCAGGTCACTTGGGC+AGG 0.435954 8_1:+48229412 Msa1197580:intron
TCCATTCAGAGGTGGCTTGT+TGG 0.439385 8_1:+48228320 Msa1197580:intron
TTGGCCCTTGTAGGAGGGAG+TGG 0.444405 8_1:+48229659 Msa1197580:CDS
TGATAAAGCCTGCTATAAAT+CGG 0.454069 8_1:-48228668 None:intergenic
TTCATCAACAATCTTCCTGA+TGG 0.461141 8_1:+48229926 Msa1197580:CDS
CCAAAGAAGATAAAGAAAAC+AGG 0.463121 8_1:-48225441 None:intergenic
GTTAGATAGGAATGATATAA+GGG 0.464908 8_1:+48229748 Msa1197580:CDS
TGAAGAACTAAACCGCGCTT+TGG 0.465042 8_1:+48229883 Msa1197580:CDS
ATGCTCAATGTCGTTATCTC+TGG 0.466404 8_1:+48229278 Msa1197580:CDS
GGGAAAATTATTAATGTCGT+AGG 0.474201 8_1:+48225462 Msa1197580:CDS
GCCGGTTTAGCCAAGGGTCT+AGG 0.475735 8_1:+48229146 Msa1197580:CDS
TATAAGAACGGTCGAAAAGC+CGG 0.476209 8_1:+48229128 Msa1197580:CDS
GTGGCTTGTTGGATGCATAC+TGG 0.477539 8_1:+48228331 Msa1197580:CDS
TGGTGGATATATAAGGTGAT+AGG 0.483279 8_1:+48229029 Msa1197580:intron
CTGAACCACTCCCTCCTACA+AGG 0.483620 8_1:-48229664 None:intergenic
ACCTGAGTATCTAATCCATC+AGG 0.484380 8_1:-48229941 None:intergenic
TTTGATACTGAGGGTTCCAC+TGG 0.484521 8_1:+48228421 Msa1197580:CDS
TTTATAAGCCGATTTATAGC+AGG 0.485132 8_1:+48228660 Msa1197580:CDS
TACAAACCTTGGCAACTTGG+TGG 0.503672 8_1:-48225515 None:intergenic
CTGATAAATGCAGAAATGTC+TGG 0.507441 8_1:-48229440 None:intergenic
ATAAGGGAGAACATATTGTA+TGG 0.521391 8_1:+48229842 Msa1197580:CDS
TTAGCCAAGGGTCTAGGACT+AGG 0.523091 8_1:+48229152 Msa1197580:CDS
AGCTTCCCACCAAGTTGCCA+AGG 0.532343 8_1:+48225509 Msa1197580:CDS
AAGTTCGTAAATCGTATCTG+AGG 0.532352 8_1:+48228799 Msa1197580:CDS
TCTCACTTCTCAGGTCACTT+GGG 0.535919 8_1:+48229408 Msa1197580:intron
TCCAATATCGTGTAAAACTA+CGG 0.540057 8_1:-48230082 None:intergenic
TTTATAGCAGGCTTTATCAT+CGG 0.542299 8_1:+48228672 Msa1197580:CDS
TCCTGATGGATTAGATACTC+AGG 0.548151 8_1:+48229940 Msa1197580:CDS
TAACAACATCAGGGCGAGAT+GGG 0.551100 8_1:-48229595 None:intergenic
TCGAAAAGCCGGTTTAGCCA+AGG 0.553727 8_1:+48229139 Msa1197580:CDS
ATAACAACATCAGGGCGAGA+TGG 0.555212 8_1:-48229596 None:intergenic
GCGGTTTAGTTCTTCAGGAG+TGG 0.555984 8_1:-48229876 None:intergenic
GATGGCTGTTGGATCTGTTG+GGG 0.557153 8_1:+48225395 Msa1197580:CDS
CCTTTGATTGCTATTGCTGG+AGG 0.561493 8_1:+48228741 Msa1197580:CDS
GGCGGGTGAAATTGCTCAAG+AGG 0.566014 8_1:+48228821 Msa1197580:CDS
GAACATCGCCAATGGTGGAA+AGG 0.569746 8_1:+48229244 Msa1197580:CDS
AGAGCCTAGTCCTAGACCCT+TGG 0.570978 8_1:-48229156 None:intergenic
CACAAGAACATCGCCAATGG+TGG 0.572168 8_1:+48229239 Msa1197580:CDS
CGTAAATCGTATCTGAGGGC+GGG 0.572256 8_1:+48228804 Msa1197580:CDS
TACTGAGGGTTCCACTGGAG+AGG 0.575230 8_1:+48228426 Msa1197580:CDS
TCAAGAAGCATTATCTGAGA+AGG 0.576918 8_1:+48228483 Msa1197580:CDS
TGTGGTTGTGCAGTATGCGT+TGG 0.581795 8_1:+48227846 Msa1197580:intron
ACAAACCTTGGCAACTTGGT+GGG 0.585892 8_1:-48225514 None:intergenic
CGAAAAGCCGGTTTAGCCAA+GGG 0.593190 8_1:+48229140 Msa1197580:CDS
ATGTCAACACGTGCTTCAAG+AGG 0.594249 8_1:+48225315 Msa1197580:CDS
TGAACCACTCCCTCCTACAA+GGG 0.594354 8_1:-48229663 None:intergenic
AAGGAGAAAAGCTTGAGCAA+TGG 0.602338 8_1:-48225348 None:intergenic
GTTCTTGTGAACAATAATGC+TGG 0.604442 8_1:-48229225 None:intergenic
AGCAGTGATATCATACAAAG+TGG 0.611024 8_1:+48229091 Msa1197580:CDS
AGAAGAAATAACCTCTCCAG+TGG 0.622551 8_1:-48228437 None:intergenic
GTTCACAAGAACATCGCCAA+TGG 0.623638 8_1:+48229236 Msa1197580:CDS
AGGGCCAAAACTTTACCTGA+AGG 0.624581 8_1:-48229644 None:intergenic
TGTTGAAAATAACAACATCA+GGG 0.626417 8_1:-48229604 None:intergenic
AGAGATAACGACATTGAGCA+TGG 0.627753 8_1:-48229276 None:intergenic
AGTTCGTAAATCGTATCTGA+GGG 0.629050 8_1:+48228800 Msa1197580:CDS
CCTCCAGCAATAGCAATCAA+AGG 0.630840 8_1:-48228741 None:intergenic
AGAACTGTACAAGCATTTGG+AGG 0.632897 8_1:+48229059 Msa1197580:CDS
TCAAGTAGCAAAGATGAGGA+TGG 0.633502 8_1:+48228360 Msa1197580:CDS
AACGTCAAGTAGCAAAGATG+AGG 0.634871 8_1:+48228356 Msa1197580:CDS
TCGTAAATCGTATCTGAGGG+CGG 0.646063 8_1:+48228803 Msa1197580:CDS
TAAATTCATACCTGCCCATG+AGG 0.653189 8_1:-48227902 None:intergenic
ATAATCATAGAAATCAGCAA+AGG 0.653377 8_1:-48225367 None:intergenic
CATCAGAAAGTTCCAAAGCG+CGG 0.658734 8_1:-48229895 None:intergenic
CTGAGGAACACATATAAGAA+CGG 0.664705 8_1:+48229116 Msa1197580:CDS
TATCATACAAAGTGGCTCTG+AGG 0.667589 8_1:+48229099 Msa1197580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAAATTAATTATTAA+GGG - chr8_1:48225899-48225918 None:intergenic 0.0%
!! TTATAATAAATTAATTATTA+AGG - chr8_1:48225900-48225919 None:intergenic 0.0%
!! AATATTAAAAAATAATATAT+TGG + chr8_1:48226816-48226835 Msa1197580:intron 0.0%
!! AAATAAAATAAAATAATAAA+TGG - chr8_1:48227152-48227171 None:intergenic 0.0%
!!! TAAATTTAAATTAATTTTAA+TGG + chr8_1:48227813-48227832 Msa1197580:intron 0.0%
!!! ATTATTTTTTATTACAAACA+TGG - chr8_1:48226050-48226069 None:intergenic 10.0%
!!! CAAAAAATCTTTATTTTTTT+AGG - chr8_1:48227002-48227021 None:intergenic 10.0%
!!! AATAAATTTTGTTATTTTTG+AGG + chr8_1:48227093-48227112 Msa1197580:intron 10.0%
!! ATAAAATAATAAATGGTTAA+GGG - chr8_1:48227145-48227164 None:intergenic 10.0%
!! AATAAAATAATAAATGGTTA+AGG - chr8_1:48227146-48227165 None:intergenic 10.0%
!!! AATAATGTTATTTAAAAAGT+TGG + chr8_1:48227971-48227990 Msa1197580:intron 10.0%
!! TTATTTAAAAATACAAACCT+TGG - chr8_1:48225529-48225548 None:intergenic 15.0%
!! AAATTTACTACAAAATTAAG+AGG + chr8_1:48225632-48225651 Msa1197580:intron 15.0%
!! AATTTACTACAAAATTAAGA+GGG + chr8_1:48225633-48225652 Msa1197580:intron 15.0%
!!! TTTTTAAAAGTTTACAAAAG+TGG + chr8_1:48226214-48226233 Msa1197580:intron 15.0%
!!! ACAAAATTTATTTGATTTCT+TGG - chr8_1:48227085-48227104 None:intergenic 15.0%
!!! AACAAAATTATTCTCTAAAA+TGG + chr8_1:48227261-48227280 Msa1197580:intron 15.0%
!!! TAGTTTGTATTTTTTCTTTA+TGG + chr8_1:48228985-48229004 Msa1197580:intron 15.0%
!! TAATTATTAAGGGTAAACAT+GGG - chr8_1:48225889-48225908 None:intergenic 20.0%
!! TTAATTATTAAGGGTAAACA+TGG - chr8_1:48225890-48225909 None:intergenic 20.0%
!!! TTTTATACATGTGAAATGAT+AGG + chr8_1:48225933-48225952 Msa1197580:intron 20.0%
!! TTTATACATGTGAAATGATA+GGG + chr8_1:48225934-48225953 Msa1197580:intron 20.0%
!!! TTTTTTATTACAAACATGGT+GGG - chr8_1:48226046-48226065 None:intergenic 20.0%
!!! ATTTTTTATTACAAACATGG+TGG - chr8_1:48226047-48226066 None:intergenic 20.0%
!! AAACGTAAAATGACATAAAA+GGG - chr8_1:48226357-48226376 None:intergenic 20.0%
!! TAAACGTAAAATGACATAAA+AGG - chr8_1:48226358-48226377 None:intergenic 20.0%
!!! TTTTGCATTATATCATACTT+AGG - chr8_1:48226535-48226554 None:intergenic 20.0%
!! TTTAGCCTATATTATATAAG+AGG + chr8_1:48226786-48226805 Msa1197580:intron 20.0%
!!! AATGACATACATTAATTTGT+TGG + chr8_1:48226839-48226858 Msa1197580:intron 20.0%
!!! TGATATATAATGTTTTCAAG+GGG - chr8_1:48226969-48226988 None:intergenic 20.0%
!!! CTGATATATAATGTTTTCAA+GGG - chr8_1:48226970-48226989 None:intergenic 20.0%
!!! ACTGATATATAATGTTTTCA+AGG - chr8_1:48226971-48226990 None:intergenic 20.0%
!! TCTCTACAATAAATATGTAA+GGG + chr8_1:48227178-48227197 Msa1197580:intron 20.0%
!!! TCATATGGTTCTAATTTTAT+TGG + chr8_1:48227469-48227488 Msa1197580:intron 20.0%
!! AGAATGAATCTTATATAAAG+TGG - chr8_1:48227694-48227713 None:intergenic 20.0%
!!! AAAGAAAAGTACTATTAACA+CGG - chr8_1:48227771-48227790 None:intergenic 20.0%
!!! TCAAATATTTTTACTTGAGT+AGG - chr8_1:48227952-48227971 None:intergenic 20.0%
!! TATAATAAAATGTGGATCAT+TGG - chr8_1:48228548-48228567 None:intergenic 20.0%
!! TCATCACTTATAATAAAATG+TGG - chr8_1:48228556-48228575 None:intergenic 20.0%
!!! TAAAGTTTTCTTTATACTCT+TGG + chr8_1:48229009-48229028 Msa1197580:intron 20.0%
!! CGAAAGTTAAAAAAAATAGA+CGG + chr8_1:48229539-48229558 Msa1197580:CDS 20.0%
!! ATAACATTTGAAAAATAGTG+TGG + chr8_1:48229976-48229995 Msa1197580:intron 20.0%
! ATAATCATAGAAATCAGCAA+AGG - chr8_1:48225370-48225389 None:intergenic 25.0%
! TTTCTATGATTATGTCTTGA+TGG + chr8_1:48225377-48225396 Msa1197580:CDS 25.0%
!! CTGTTTTCTTTATCTTCTTT+GGG + chr8_1:48225442-48225461 Msa1197580:CDS 25.0%
! AATTATTAATGTCGTAGGTT+TGG + chr8_1:48225467-48225486 Msa1197580:CDS 25.0%
!!! AGTAAATTTTAACTGCATGT+GGG - chr8_1:48225621-48225640 None:intergenic 25.0%
!!! TAGTAAATTTTAACTGCATG+TGG - chr8_1:48225622-48225641 None:intergenic 25.0%
!! TTGACTTGAAAGATTAATCT+TGG + chr8_1:48226691-48226710 Msa1197580:intron 25.0%
! CTCTCTACAATAAATATGTA+AGG + chr8_1:48227177-48227196 Msa1197580:intron 25.0%
! AATGGACAAGTATTATGAAA+CGG + chr8_1:48227279-48227298 Msa1197580:intron 25.0%
! ATACACTAAACACATATAGT+GGG - chr8_1:48227373-48227392 None:intergenic 25.0%
! AATACACTAAACACATATAG+TGG - chr8_1:48227374-48227393 None:intergenic 25.0%
! AATGATCTTAAGTGATTTGA+TGG + chr8_1:48227419-48227438 Msa1197580:intron 25.0%
!!! TGCTTTGAGTTTTTATCATA+TGG + chr8_1:48227454-48227473 Msa1197580:intron 25.0%
! TAATGCAAAGTTATTTGCAA+TGG - chr8_1:48227526-48227545 None:intergenic 25.0%
!!! CATAAGACTCATCATTTTTT+TGG - chr8_1:48227657-48227676 None:intergenic 25.0%
!!! AAATCGAACTTCAACTTTTT+TGG - chr8_1:48228026-48228045 None:intergenic 25.0%
!! ATCATTATATCGGTTATTGT+TGG - chr8_1:48228194-48228213 None:intergenic 25.0%
! CATTCAGGTAATCATTATAT+CGG - chr8_1:48228204-48228223 None:intergenic 25.0%
! TACTATATATTTGACCATAC+TGG + chr8_1:48228284-48228303 Msa1197580:intron 25.0%
! ACTATATATTTGACCATACT+GGG + chr8_1:48228285-48228304 Msa1197580:intron 25.0%
!! TATAAGTCTTTTTGATACTG+AGG + chr8_1:48228411-48228430 Msa1197580:CDS 25.0%
!! ATAAGTCTTTTTGATACTGA+GGG + chr8_1:48228412-48228431 Msa1197580:CDS 25.0%
!! ATTTACGAACTTTTGCAATA+AGG - chr8_1:48228791-48228810 None:intergenic 25.0%
!! ATTGTGTTCTTTTTCTATCA+TGG + chr8_1:48229183-48229202 Msa1197580:CDS 25.0%
!! TTGTGTTCTTTTTCTATCAT+GGG + chr8_1:48229184-48229203 Msa1197580:CDS 25.0%
! ATTCAAAACAGTGAAAACAA+AGG - chr8_1:48229312-48229331 None:intergenic 25.0%
!!! TTTGTTTTCACTGTTTTGAA+TGG + chr8_1:48229311-48229330 Msa1197580:intron 25.0%
! TGTTGAAAATAACAACATCA+GGG - chr8_1:48229607-48229626 None:intergenic 25.0%
! TTGTTGAAAATAACAACATC+AGG - chr8_1:48229608-48229627 None:intergenic 25.0%
! TGTTAGATAGGAATGATATA+AGG + chr8_1:48229747-48229766 Msa1197580:CDS 25.0%
! GTTAGATAGGAATGATATAA+GGG + chr8_1:48229748-48229767 Msa1197580:CDS 25.0%
! ATCATAACATGATCATTACT+AGG + chr8_1:48230041-48230060 Msa1197580:intron 25.0%
CCAAAGAAGATAAAGAAAAC+AGG - chr8_1:48225444-48225463 None:intergenic 30.0%
! CCTGTTTTCTTTATCTTCTT+TGG + chr8_1:48225441-48225460 Msa1197580:CDS 30.0%
GGGAAAATTATTAATGTCGT+AGG + chr8_1:48225462-48225481 Msa1197580:CDS 30.0%
! TTCCCATGCATTTTCTATTA+GGG + chr8_1:48225575-48225594 Msa1197580:intron 30.0%
TTCCCTAATAGAAAATGCAT+GGG - chr8_1:48225580-48225599 None:intergenic 30.0%
GTGGGTAAAAAAGATTAACA+TGG - chr8_1:48225603-48225622 None:intergenic 30.0%
TTACTACAAAATTAAGAGGG+TGG + chr8_1:48225636-48225655 Msa1197580:intron 30.0%
! TAAAGTGGTAAGGGTATAAA+TGG - chr8_1:48225859-48225878 None:intergenic 30.0%
GGATTTAGTTAAAGTGGTAA+GGG - chr8_1:48225868-48225887 None:intergenic 30.0%
AACATGGGATTTAGTTAAAG+TGG - chr8_1:48225874-48225893 None:intergenic 30.0%
CTTTCTTATTCTTTGTTGAC+AGG + chr8_1:48226158-48226177 Msa1197580:intron 30.0%
! TTTTAAATAGTTGCGCACAA+AGG + chr8_1:48226614-48226633 Msa1197580:intron 30.0%
TGGTGCCTCTTATATAATAT+AGG - chr8_1:48226794-48226813 None:intergenic 30.0%
ACTAGAAAAGTTGAGTAATG+AGG - chr8_1:48226920-48226939 None:intergenic 30.0%
!! GATGGACATGTATTTTGAAA+CGG - chr8_1:48227044-48227063 None:intergenic 30.0%
TTCAAAATACATGTCCATCT+TGG + chr8_1:48227045-48227064 Msa1197580:intron 30.0%
TACACTAAACACATATAGTG+GGG - chr8_1:48227372-48227391 None:intergenic 30.0%
! ATTTTATTGGATGTCCTCAA+AGG + chr8_1:48227482-48227501 Msa1197580:intron 30.0%
CTTTGCATTATGCTCATTTA+CGG + chr8_1:48227536-48227555 Msa1197580:intron 30.0%
AGACTCATCATTTGTCAAAA+AGG - chr8_1:48227605-48227624 None:intergenic 30.0%
TTTAATGGTATACCTGTTTG+TGG + chr8_1:48227828-48227847 Msa1197580:intron 30.0%
! TAGTAATTTTGTTCTCCTCA+TGG + chr8_1:48227887-48227906 Msa1197580:CDS 30.0%
! AGTAATTTTGTTCTCCTCAT+GGG + chr8_1:48227888-48227907 Msa1197580:CDS 30.0%
AAGTTCGATTTCCAATGTTA+AGG + chr8_1:48228035-48228054 Msa1197580:intron 30.0%
ATGTGTAGAATCCTTAACAT+TGG - chr8_1:48228049-48228068 None:intergenic 30.0%
CTATATATTTGACCATACTG+GGG + chr8_1:48228286-48228305 Msa1197580:intron 30.0%
TCAAATTTGGTATCACTTAC+TGG - chr8_1:48228611-48228630 None:intergenic 30.0%
ACCAAATTTGATGCATTTAC+AGG + chr8_1:48228620-48228639 Msa1197580:intron 30.0%
ACCTGTAAATGCATCAAATT+TGG - chr8_1:48228624-48228643 None:intergenic 30.0%
AATTTGATGCATTTACAGGT+TGG + chr8_1:48228624-48228643 Msa1197580:intron 30.0%
ATTTGATGCATTTACAGGTT+GGG + chr8_1:48228625-48228644 Msa1197580:intron 30.0%
! TTTATAAGCCGATTTATAGC+AGG + chr8_1:48228660-48228679 Msa1197580:CDS 30.0%
TGATAAAGCCTGCTATAAAT+CGG - chr8_1:48228671-48228690 None:intergenic 30.0%
! TTTATAGCAGGCTTTATCAT+CGG + chr8_1:48228672-48228691 Msa1197580:CDS 30.0%
!!! TCATCGGTTTTTTAAGAGTT+TGG + chr8_1:48228688-48228707 Msa1197580:CDS 30.0%
! CTTTATGCATATGTGACTTT+TGG + chr8_1:48228765-48228784 Msa1197580:CDS 30.0%
! AGTTTTCTTTATACTCTTGG+TGG + chr8_1:48229012-48229031 Msa1197580:intron 30.0%
! ATACTCTTGGTGGATATATA+AGG + chr8_1:48229022-48229041 Msa1197580:intron 30.0%
!! AACAACTCTGAAATGTTACA+CGG - chr8_1:48229349-48229368 None:intergenic 30.0%
CTCTCTATCATCTCAAAAAT+GGG - chr8_1:48229485-48229504 None:intergenic 30.0%
!!! CATTTTTGAGATGATAGAGA+GGG + chr8_1:48229484-48229503 Msa1197580:CDS 30.0%
CATTCCTATCTAACAGAATT+TGG - chr8_1:48229742-48229761 None:intergenic 30.0%
TAAGGGAACTTGATCTAAAA+TGG + chr8_1:48229765-48229784 Msa1197580:CDS 30.0%
AAATGGCTTAGACATCAAAT+TGG + chr8_1:48229782-48229801 Msa1197580:CDS 30.0%
! ACTTTTTGCTACAAGCATAA+GGG + chr8_1:48229826-48229845 Msa1197580:CDS 30.0%
ATAAGGGAGAACATATTGTA+TGG + chr8_1:48229842-48229861 Msa1197580:CDS 30.0%
TCCAATATCGTGTAAAACTA+CGG - chr8_1:48230085-48230104 None:intergenic 30.0%
AAATACAAACCTTGGCAACT+TGG - chr8_1:48225521-48225540 None:intergenic 35.0%
AATAGAAAATGCATGGGAAG+AGG - chr8_1:48225574-48225593 None:intergenic 35.0%
! CTTCCCATGCATTTTCTATT+AGG + chr8_1:48225574-48225593 Msa1197580:intron 35.0%
GTTCCCTAATAGAAAATGCA+TGG - chr8_1:48225581-48225600 None:intergenic 35.0%
AAGCTAGAAGCTCATTTATG+TGG - chr8_1:48225683-48225702 None:intergenic 35.0%
!! TAAATGAGCTTCTAGCTTCT+AGG + chr8_1:48225685-48225704 Msa1197580:intron 35.0%
TTGACAAAAGAAGCTCTGTT+TGG + chr8_1:48225720-48225739 Msa1197580:intron 35.0%
CTATAAGCTCAAAAGCTACT+TGG - chr8_1:48225813-48225832 None:intergenic 35.0%
GGGATTTAGTTAAAGTGGTA+AGG - chr8_1:48225869-48225888 None:intergenic 35.0%
! GATAAGCTAGTTGAAGTGTT+TGG - chr8_1:48226406-48226425 None:intergenic 35.0%
TATCATACTTAGGCTCTGTT+TGG - chr8_1:48226525-48226544 None:intergenic 35.0%
GACAAAACTCTCATGAGATT+TGG - chr8_1:48226654-48226673 None:intergenic 35.0%
TGACTACAATTTCTCCAAGA+TGG - chr8_1:48227062-48227081 None:intergenic 35.0%
GACAAGTATTATGAAACGGA+TGG + chr8_1:48227283-48227302 Msa1197580:intron 35.0%
AGTGTATCATCTCACCATTA+AGG + chr8_1:48227320-48227339 Msa1197580:intron 35.0%
TATCATCTCACCATTAAGGA+GGG + chr8_1:48227324-48227343 Msa1197580:intron 35.0%
!! AAGAAGAAAGTGTTCCTTTG+AGG - chr8_1:48227499-48227518 None:intergenic 35.0%
CTCATCATTTGTCAAAAAGG+TGG - chr8_1:48227602-48227621 None:intergenic 35.0%
TATTGTTGGATCGAGATCAA+CGG - chr8_1:48228180-48228199 None:intergenic 35.0%
AATGTGAGATCTATCGCTAA+GGG + chr8_1:48228220-48228239 Msa1197580:intron 35.0%
!! TCAAGAAGCATTATCTGAGA+AGG + chr8_1:48228483-48228502 Msa1197580:CDS 35.0%
AAGTTCGTAAATCGTATCTG+AGG + chr8_1:48228799-48228818 Msa1197580:CDS 35.0%
AGTTCGTAAATCGTATCTGA+GGG + chr8_1:48228800-48228819 Msa1197580:CDS 35.0%
! TGGTGGATATATAAGGTGAT+AGG + chr8_1:48229029-48229048 Msa1197580:intron 35.0%
AGCAGTGATATCATACAAAG+TGG + chr8_1:48229091-48229110 Msa1197580:CDS 35.0%
CTGAGGAACACATATAAGAA+CGG + chr8_1:48229116-48229135 Msa1197580:CDS 35.0%
GTTCTTGTGAACAATAATGC+TGG - chr8_1:48229228-48229247 None:intergenic 35.0%
CTGATAAATGCAGAAATGTC+TGG - chr8_1:48229443-48229462 None:intergenic 35.0%
CCTCTCTATCATCTCAAAAA+TGG - chr8_1:48229486-48229505 None:intergenic 35.0%
!!! CCATTTTTGAGATGATAGAG+AGG + chr8_1:48229483-48229502 Msa1197580:CDS 35.0%
! GATTCCTTCAGGTAAAGTTT+TGG + chr8_1:48229640-48229659 Msa1197580:CDS 35.0%
CGTTTCTATGAACCAATTTC+TGG + chr8_1:48229716-48229735 Msa1197580:CDS 35.0%
AACAGAATTTGGCCAGAAAT+TGG - chr8_1:48229731-48229750 None:intergenic 35.0%
!! CACTTTTTGCTACAAGCATA+AGG + chr8_1:48229825-48229844 Msa1197580:CDS 35.0%
TTCATCAACAATCTTCCTGA+TGG + chr8_1:48229926-48229945 Msa1197580:CDS 35.0%
! AAATAGTGTGGTTGCGATTT+TGG + chr8_1:48229988-48230007 Msa1197580:intron 35.0%
!! ACCGTAGTTTTACACGATAT+TGG + chr8_1:48230081-48230100 Msa1197580:CDS 35.0%
!! GTAGTTTTACACGATATTGG+AGG + chr8_1:48230084-48230103 Msa1197580:CDS 35.0%
ACGTGCTTCAAGAGGAAAAA+AGG + chr8_1:48225323-48225342 Msa1197580:CDS 40.0%
AAGGAGAAAAGCTTGAGCAA+TGG - chr8_1:48225351-48225370 None:intergenic 40.0%
! GATTATGTCTTGATGGCTGT+TGG + chr8_1:48225384-48225403 Msa1197580:CDS 40.0%
! GGGAAGCTTCTTTAGGAAAA+AGG - chr8_1:48225497-48225516 None:intergenic 40.0%
GGGTGGATAATAGATCTGTT+TGG + chr8_1:48225653-48225672 Msa1197580:intron 40.0%
!!! GGACATGTATTTTGAAACGG+AGG - chr8_1:48227041-48227060 None:intergenic 40.0%
GTATCATCTCACCATTAAGG+AGG + chr8_1:48227323-48227342 Msa1197580:intron 40.0%
TAAATTCATACCTGCCCATG+AGG - chr8_1:48227905-48227924 None:intergenic 40.0%
TCATCGATGTGAGAATTGTG+TGG - chr8_1:48228072-48228091 None:intergenic 40.0%
TAGCGATAGATCTCACATTC+AGG - chr8_1:48228219-48228238 None:intergenic 40.0%
GAATGTGAGATCTATCGCTA+AGG + chr8_1:48228219-48228238 Msa1197580:intron 40.0%
AACGTCAAGTAGCAAAGATG+AGG + chr8_1:48228356-48228375 Msa1197580:CDS 40.0%
TCAAGTAGCAAAGATGAGGA+TGG + chr8_1:48228360-48228379 Msa1197580:CDS 40.0%
AGAAGAAATAACCTCTCCAG+TGG - chr8_1:48228440-48228459 None:intergenic 40.0%
! GTTCCTTTGATTGCTATTGC+TGG + chr8_1:48228738-48228757 Msa1197580:CDS 40.0%
GTGAGAACTGTACAAGCATT+TGG + chr8_1:48229056-48229075 Msa1197580:CDS 40.0%
AGAACTGTACAAGCATTTGG+AGG + chr8_1:48229059-48229078 Msa1197580:CDS 40.0%
! TATCATACAAAGTGGCTCTG+AGG + chr8_1:48229099-48229118 Msa1197580:CDS 40.0%
TATAAGAACGGTCGAAAAGC+CGG + chr8_1:48229128-48229147 Msa1197580:CDS 40.0%
AGAGATAACGACATTGAGCA+TGG - chr8_1:48229279-48229298 None:intergenic 40.0%
ATGCTCAATGTCGTTATCTC+TGG + chr8_1:48229278-48229297 Msa1197580:CDS 40.0%
CAGTGAAAACAAAGGCTTAC+AGG - chr8_1:48229304-48229323 None:intergenic 40.0%
! TTTTGTCTCGAGATTCCTTC+AGG + chr8_1:48229629-48229648 Msa1197580:CDS 40.0%
CTGGCCAAATTCTGTTAGAT+AGG + chr8_1:48229735-48229754 Msa1197580:CDS 40.0%
! ATGCTTGTAGCAAAAAGTGC+AGG - chr8_1:48229824-48229843 None:intergenic 40.0%
!! TCCTGATGGATTAGATACTC+AGG + chr8_1:48229940-48229959 Msa1197580:CDS 40.0%
ACCTGAGTATCTAATCCATC+AGG - chr8_1:48229944-48229963 None:intergenic 40.0%
ATGTCAACACGTGCTTCAAG+AGG + chr8_1:48225315-48225334 Msa1197580:CDS 45.0%
! TTGATGGCTGTTGGATCTGT+TGG + chr8_1:48225393-48225412 Msa1197580:CDS 45.0%
TGATGGCTGTTGGATCTGTT+GGG + chr8_1:48225394-48225413 Msa1197580:CDS 45.0%
! ACTTGGTGGGAAGCTTCTTT+AGG - chr8_1:48225504-48225523 None:intergenic 45.0%
ACAAACCTTGGCAACTTGGT+GGG - chr8_1:48225517-48225536 None:intergenic 45.0%
TACAAACCTTGGCAACTTGG+TGG - chr8_1:48225518-48225537 None:intergenic 45.0%
ACATGTGTGTCCCTCCTTAA+TGG - chr8_1:48227337-48227356 None:intergenic 45.0%
TTAAGGAGGGACACACATGT+AGG + chr8_1:48227337-48227356 Msa1197580:intron 45.0%
TAAGGAGGGACACACATGTA+GGG + chr8_1:48227338-48227357 Msa1197580:intron 45.0%
CATACTGCACAACCACAAAC+AGG - chr8_1:48227843-48227862 None:intergenic 45.0%
! ATTTTGTTCTCCTCATGGGC+AGG + chr8_1:48227892-48227911 Msa1197580:CDS 45.0%
CTCACATCGATGATCATCGT+TGG + chr8_1:48228079-48228098 Msa1197580:intron 45.0%
CCTCTGAATGGAATCAACGT+TGG - chr8_1:48228312-48228331 None:intergenic 45.0%
!! CCAACGTTGATTCCATTCAG+AGG + chr8_1:48228309-48228328 Msa1197580:intron 45.0%
!! ACGTTGATTCCATTCAGAGG+TGG + chr8_1:48228312-48228331 Msa1197580:intron 45.0%
TTTGATACTGAGGGTTCCAC+TGG + chr8_1:48228421-48228440 Msa1197580:CDS 45.0%
CCTCCAGCAATAGCAATCAA+AGG - chr8_1:48228744-48228763 None:intergenic 45.0%
! CCTTTGATTGCTATTGCTGG+AGG + chr8_1:48228741-48228760 Msa1197580:CDS 45.0%
TCGTAAATCGTATCTGAGGG+CGG + chr8_1:48228803-48228822 Msa1197580:CDS 45.0%
! TATCATGGGCACTGCTTGTT+TGG + chr8_1:48229198-48229217 Msa1197580:CDS 45.0%
GTTCACAAGAACATCGCCAA+TGG + chr8_1:48229236-48229255 Msa1197580:CDS 45.0%
GATCTTGCTTCTCACTTCTC+AGG + chr8_1:48229399-48229418 Msa1197580:intron 45.0%
TTCTCACTTCTCAGGTCACT+TGG + chr8_1:48229407-48229426 Msa1197580:intron 45.0%
TCTCACTTCTCAGGTCACTT+GGG + chr8_1:48229408-48229427 Msa1197580:intron 45.0%
TAACAACATCAGGGCGAGAT+GGG - chr8_1:48229598-48229617 None:intergenic 45.0%
ATAACAACATCAGGGCGAGA+TGG - chr8_1:48229599-48229618 None:intergenic 45.0%
AGGGCCAAAACTTTACCTGA+AGG - chr8_1:48229647-48229666 None:intergenic 45.0%
!! GGTAAAGTTTTGGCCCTTGT+AGG + chr8_1:48229650-48229669 Msa1197580:CDS 45.0%
!! AAAGTTTTGGCCCTTGTAGG+AGG + chr8_1:48229653-48229672 Msa1197580:CDS 45.0%
!! AAGTTTTGGCCCTTGTAGGA+GGG + chr8_1:48229654-48229673 Msa1197580:CDS 45.0%
!! AAAGCGCGGTTTAGTTCTTC+AGG - chr8_1:48229884-48229903 None:intergenic 45.0%
TGAAGAACTAAACCGCGCTT+TGG + chr8_1:48229883-48229902 Msa1197580:CDS 45.0%
CATCAGAAAGTTCCAAAGCG+CGG - chr8_1:48229898-48229917 None:intergenic 45.0%
! AGTGTGGTTGCGATTTTGGA+AGG + chr8_1:48229992-48230011 Msa1197580:intron 45.0%
!! GTGTGGTTGCGATTTTGGAA+GGG + chr8_1:48229993-48230012 Msa1197580:intron 45.0%
!! TGTGGTTGCGATTTTGGAAG+GGG + chr8_1:48229994-48230013 Msa1197580:intron 45.0%
!!! TTATTTTTAAATTCATAAAT+TGG - chr8_1:48226251-48226270 None:intergenic 5.0%
!!! TATAATATACATTTTTTTTA+AGG - chr8_1:48226590-48226609 None:intergenic 5.0%
!!! ATATTATTTTTTAATATTCA+TGG - chr8_1:48226814-48226833 None:intergenic 5.0%
GATGGCTGTTGGATCTGTTG+GGG + chr8_1:48225395-48225414 Msa1197580:CDS 50.0%
TCTGTTGGGGCATGCATTCA+TGG + chr8_1:48225408-48225427 Msa1197580:CDS 50.0%
AAGGAGGGACACACATGTAG+GGG + chr8_1:48227339-48227358 Msa1197580:intron 50.0%
TGTGGTTGTGCAGTATGCGT+TGG + chr8_1:48227846-48227865 Msa1197580:intron 50.0%
AATCAACGTTGGCCCCAGTA+TGG - chr8_1:48228301-48228320 None:intergenic 50.0%
! TCCATTCAGAGGTGGCTTGT+TGG + chr8_1:48228320-48228339 Msa1197580:intron 50.0%
TCCAACAAGCCACCTCTGAA+TGG - chr8_1:48228324-48228343 None:intergenic 50.0%
!! GTGGCTTGTTGGATGCATAC+TGG + chr8_1:48228331-48228350 Msa1197580:CDS 50.0%
CGTAAATCGTATCTGAGGGC+GGG + chr8_1:48228804-48228823 Msa1197580:CDS 50.0%
! TCGAAAAGCCGGTTTAGCCA+AGG + chr8_1:48229139-48229158 Msa1197580:CDS 50.0%
! CGAAAAGCCGGTTTAGCCAA+GGG + chr8_1:48229140-48229159 Msa1197580:CDS 50.0%
TCCTAGACCCTTGGCTAAAC+CGG - chr8_1:48229150-48229169 None:intergenic 50.0%
! TTAGCCAAGGGTCTAGGACT+AGG + chr8_1:48229152-48229171 Msa1197580:CDS 50.0%
CACAAGAACATCGCCAATGG+TGG + chr8_1:48229239-48229258 Msa1197580:CDS 50.0%
! GAACATCGCCAATGGTGGAA+AGG + chr8_1:48229244-48229263 Msa1197580:CDS 50.0%
TGCGAAAGCCTTTCCACCAT+TGG - chr8_1:48229255-48229274 None:intergenic 50.0%
TGAACCACTCCCTCCTACAA+GGG - chr8_1:48229666-48229685 None:intergenic 50.0%
!! GCGGTTTAGTTCTTCAGGAG+TGG - chr8_1:48229879-48229898 None:intergenic 50.0%
AGCTTCCCACCAAGTTGCCA+AGG + chr8_1:48225509-48225528 Msa1197580:CDS 55.0%
TACTGAGGGTTCCACTGGAG+AGG + chr8_1:48228426-48228445 Msa1197580:CDS 55.0%
GGCGGGTGAAATTGCTCAAG+AGG + chr8_1:48228821-48228840 Msa1197580:CDS 55.0%
AGAGCCTAGTCCTAGACCCT+TGG - chr8_1:48229159-48229178 None:intergenic 55.0%
ACTTCTCAGGTCACTTGGGC+AGG + chr8_1:48229412-48229431 Msa1197580:intron 55.0%
CTGAACCACTCCCTCCTACA+AGG - chr8_1:48229667-48229686 None:intergenic 55.0%
CTTGTAGGAGGGAGTGGTTC+AGG + chr8_1:48229665-48229684 Msa1197580:CDS 55.0%
! GCCGGTTTAGCCAAGGGTCT+AGG + chr8_1:48229146-48229165 Msa1197580:CDS 60.0%
TTGGCCCTTGTAGGAGGGAG+TGG + chr8_1:48229659-48229678 Msa1197580:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 48225315 48230128 48225315 ID=Msa1197580;Name=Msa1197580
chr8_1 mRNA 48225315 48230128 48225315 ID=Msa1197580-mRNA-1;Parent=Msa1197580;Name=Msa1197580-mRNA-1;_AED=0.36;_eAED=0.36;_QI=0|0.83|0.71|0.85|1|1|7|0|504
chr8_1 exon 48225315 48225530 48225315 ID=Msa1197580-mRNA-1:exon:15260;Parent=Msa1197580-mRNA-1
chr8_1 exon 48227859 48227913 48227859 ID=Msa1197580-mRNA-1:exon:15261;Parent=Msa1197580-mRNA-1
chr8_1 exon 48228329 48228504 48228329 ID=Msa1197580-mRNA-1:exon:15262;Parent=Msa1197580-mRNA-1
chr8_1 exon 48228642 48228842 48228642 ID=Msa1197580-mRNA-1:exon:15263;Parent=Msa1197580-mRNA-1
chr8_1 exon 48229044 48229303 48229044 ID=Msa1197580-mRNA-1:exon:15264;Parent=Msa1197580-mRNA-1
chr8_1 exon 48229421 48229961 48229421 ID=Msa1197580-mRNA-1:exon:15265;Parent=Msa1197580-mRNA-1
chr8_1 exon 48230063 48230128 48230063 ID=Msa1197580-mRNA-1:exon:15266;Parent=Msa1197580-mRNA-1
chr8_1 CDS 48225315 48225530 48225315 ID=Msa1197580-mRNA-1:cds;Parent=Msa1197580-mRNA-1
chr8_1 CDS 48227859 48227913 48227859 ID=Msa1197580-mRNA-1:cds;Parent=Msa1197580-mRNA-1
chr8_1 CDS 48228329 48228504 48228329 ID=Msa1197580-mRNA-1:cds;Parent=Msa1197580-mRNA-1
chr8_1 CDS 48228642 48228842 48228642 ID=Msa1197580-mRNA-1:cds;Parent=Msa1197580-mRNA-1
chr8_1 CDS 48229044 48229303 48229044 ID=Msa1197580-mRNA-1:cds;Parent=Msa1197580-mRNA-1
chr8_1 CDS 48229421 48229961 48229421 ID=Msa1197580-mRNA-1:cds;Parent=Msa1197580-mRNA-1
chr8_1 CDS 48230063 48230128 48230063 ID=Msa1197580-mRNA-1:cds;Parent=Msa1197580-mRNA-1
Gene Sequence

>Msa1197580

ATGTCAACACGTGCTTCAAGAGGAAAAAAGGTTCCATTGCTCAAGCTTTTCTCCTTTGCTGATTTCTATGATTATGTCTTGATGGCTGTTGGATCTGTTGGGGCATGCATTCATGGTGCATCTGTTCCTGTTTTCTTTATCTTCTTTGGGAAAATTATTAATGTCGTAGGTTTGGCTTACCTTTTTCCTAAAGAAGCTTCCCACCAAGTTGCCAAGTATGCGTTGGATTTTGTGTATTTAAGTATAGTAATTTTGTTCTCCTCATGGGCAGAGGTGGCTTGTTGGATGCATACTGGAGAACGTCAAGTAGCAAAGATGAGGATGGCATATTTAAGATCAATGTTGAATCAAGATATAAGTCTTTTTGATACTGAGGGTTCCACTGGAGAGGTTATTTCTTCTATTACAAGTGACATCATTGTTGTTCAAGAAGCATTATCTGAGAAGGTTGGGAACTTTTTGCACTTTATAAGCCGATTTATAGCAGGCTTTATCATCGGTTTTTTAAGAGTTTGGCAGATCAGTTTAGTGACACTCGCTATTGTTCCTTTGATTGCTATTGCTGGAGGTCTTTATGCATATGTGACTTTTGGCCTTATTGCAAAAGTTCGTAAATCGTATCTGAGGGCGGGTGAAATTGCTCAAGAGGTGATAGGAAATGTGAGAACTGTACAAGCATTTGGAGGAGAACAAAGAGCAGTGATATCATACAAAGTGGCTCTGAGGAACACATATAAGAACGGTCGAAAAGCCGGTTTAGCCAAGGGTCTAGGACTAGGCTCTATGCATTGTGTTCTTTTTCTATCATGGGCACTGCTTGTTTGGTTCACCAGCATTATTGTTCACAAGAACATCGCCAATGGTGGAAAGGCTTTCGCAACCATGCTCAATGTCGTTATCTCTGGCCTGTCACTTGGGCAGGCAGCACCAGACATTTCTGCATTTATCAGAGCAAAGACAGCAGCTTATCCCATTTTTGAGATGATAGAGAGGGACACAGTTAACAAAAATAGCTCAAAAGATGATCGAAAGTTAAAAAAAATAGACGGTCACATACAATTTGTTAATGTTTGTTTCAGTTACCCATCTCGCCCTGATGTTGTTATTTTCAACAATTTTTGTCTCGAGATTCCTTCAGGTAAAGTTTTGGCCCTTGTAGGAGGGAGTGGTTCAGGAAAAAGCACAATTATTTCGTTAATTGAGCGTTTCTATGAACCAATTTCTGGCCAAATTCTGTTAGATAGGAATGATATAAGGGAACTTGATCTAAAATGGCTTAGACATCAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCTACAAGCATAAGGGAGAACATATTGTATGGTAAAAATGACGCCACTCCTGAAGAACTAAACCGCGCTTTGGAACTTTCTGATGCTCTTTCTTTCATCAACAATCTTCCTGATGGATTAGATACTCAGGAATATCAGTCATATCTGACCGTAGTTTTACACGATATTGGAGGTCTCAACATGACTGTTATTTAA
Protein sequence

>Msa1197580

MSTRASRGKKVPLLKLFSFADFYDYVLMAVGSVGACIHGASVPVFFIFFGKIINVVGLAYLFPKEASHQVAKYALDFVYLSIVILFSSWAEVACWMHTGERQVAKMRMAYLRSMLNQDISLFDTEGSTGEVISSITSDIIVVQEALSEKVGNFLHFISRFIAGFIIGFLRVWQISLVTLAIVPLIAIAGGLYAYVTFGLIAKVRKSYLRAGEIAQEVIGNVRTVQAFGGEQRAVISYKVALRNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSIIVHKNIANGGKAFATMLNVVISGLSLGQAAPDISAFIRAKTAAYPIFEMIERDTVNKNSSKDDRKLKKIDGHIQFVNVCFSYPSRPDVVIFNNFCLEIPSGKVLALVGGSGSGKSTIISLIERFYEPISGQILLDRNDIRELDLKWLRHQIGLVNQEPALFATSIRENILYGKNDATPEELNRALELSDALSFINNLPDGLDTQEYQSYLTVVLHDIGGLNMTVI*