Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775440 | sp|Q39253|CAX1_ARATH | 67.237 | 409 | 123 | 5 | 25 | 425 | 32 | 437 | 0.0 | 534 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775440 | G7KE49 | 98.621 | 435 | 5 | 1 | 1 | 434 | 1 | 435 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004360 | Msa0775440 | 0.807364 | 5.240276e-50 | -8.615850e-47 |
| Msa0012440 | Msa0775440 | 0.810055 | 1.394145e-50 | -8.615850e-47 |
| Msa0036430 | Msa0775440 | 0.804660 | 1.941784e-49 | -8.615850e-47 |
| Msa0044020 | Msa0775440 | 0.804297 | 2.311891e-49 | -8.615850e-47 |
| Msa0044100 | Msa0775440 | 0.810487 | 1.124756e-50 | -8.615850e-47 |
| Msa0053110 | Msa0775440 | 0.816416 | 5.593886e-52 | -8.615850e-47 |
| Msa0072810 | Msa0775440 | 0.802930 | 4.440362e-49 | -8.615850e-47 |
| Msa0075310 | Msa0775440 | 0.807660 | 4.534156e-50 | -8.615850e-47 |
| Msa0095540 | Msa0775440 | 0.811972 | 5.356849e-51 | -8.615850e-47 |
| Msa0096000 | Msa0775440 | 0.817310 | 3.523119e-52 | -8.615850e-47 |
| Msa0105420 | Msa0775440 | 0.813235 | 2.836660e-51 | -8.615850e-47 |
| Msa0109950 | Msa0775440 | 0.807730 | 4.381304e-50 | -8.615850e-47 |
| Msa0120330 | Msa0775440 | 0.807093 | 5.980632e-50 | -8.615850e-47 |
| Msa0609430 | Msa0775440 | 0.804568 | 2.029135e-49 | -8.615850e-47 |
| Msa0611380 | Msa0775440 | 0.851601 | 7.983043e-61 | -8.615850e-47 |
| Msa0618180 | Msa0775440 | 0.831360 | 1.744774e-55 | -8.615850e-47 |
| Msa0618220 | Msa0775440 | 0.824204 | 9.161683e-54 | -8.615850e-47 |
| Msa0619070 | Msa0775440 | 0.800492 | 1.404866e-48 | -8.615850e-47 |
| Msa0619330 | Msa0775440 | 0.805254 | 1.458715e-49 | -8.615850e-47 |
| Msa0619990 | Msa0775440 | 0.831816 | 1.346962e-55 | -8.615850e-47 |
| Msa0628640 | Msa0775440 | 0.872762 | 2.478426e-67 | -8.615850e-47 |
| Msa0631120 | Msa0775440 | 0.880412 | 5.607290e-70 | -8.615850e-47 |
| Msa0642650 | Msa0775440 | 0.802960 | 4.377102e-49 | -8.615850e-47 |
| Msa0650070 | Msa0775440 | 0.803036 | 4.222096e-49 | -8.615850e-47 |
| Msa0666030 | Msa0775440 | 0.847055 | 1.472755e-59 | -8.615850e-47 |
| Msa0669340 | Msa0775440 | 0.897831 | 9.594463e-77 | -8.615850e-47 |
| Msa0681890 | Msa0775440 | 0.800458 | 1.427521e-48 | -8.615850e-47 |
| Msa0684500 | Msa0775440 | 0.826293 | 2.936694e-54 | -8.615850e-47 |
| Msa0701970 | Msa0775440 | 0.854659 | 1.062438e-61 | -8.615850e-47 |
| Msa0716450 | Msa0775440 | 0.869844 | 2.282782e-66 | -8.615850e-47 |
| Msa0717260 | Msa0775440 | 0.887326 | 1.573885e-72 | -8.615850e-47 |
| Msa0734230 | Msa0775440 | 0.909726 | 4.138351e-82 | -8.615850e-47 |
| Msa0739430 | Msa0775440 | 0.806951 | 6.410696e-50 | -8.615850e-47 |
| Msa0741900 | Msa0775440 | 0.801973 | 6.994080e-49 | -8.615850e-47 |
| Msa0747780 | Msa0775440 | 0.817009 | 4.118669e-52 | -8.615850e-47 |
| Msa0754370 | Msa0775440 | 0.805138 | 1.542870e-49 | -8.615850e-47 |
| Msa0754860 | Msa0775440 | 0.805332 | 1.404947e-49 | -8.615850e-47 |
| Msa0758320 | Msa0775440 | 0.882819 | 7.565593e-71 | -8.615850e-47 |
| Msa0775440 | Msa0776220 | 0.804799 | 1.816350e-49 | -8.615850e-47 |
| Msa0775440 | Msa0782330 | 0.808479 | 3.034568e-50 | -8.615850e-47 |
| Msa0775440 | Msa0787260 | 0.801503 | 8.733868e-49 | -8.615850e-47 |
| Msa0775440 | Msa0795690 | 0.810733 | 9.954660e-51 | -8.615850e-47 |
| Msa0775440 | Msa0796590 | 0.800058 | 1.722098e-48 | -8.615850e-47 |
| Msa0775440 | Msa0799030 | 0.873354 | 1.569094e-67 | -8.615850e-47 |
| Msa0775440 | Msa0799700 | 0.836071 | 1.160057e-56 | -8.615850e-47 |
| Msa0775440 | Msa0810020 | 0.830571 | 2.724097e-55 | -8.615850e-47 |
| Msa0775440 | Msa0812820 | 0.911812 | 3.978636e-83 | -8.615850e-47 |
| Msa0775440 | Msa0822990 | 0.810096 | 1.365923e-50 | -8.615850e-47 |
| Msa0775440 | Msa0833940 | 0.807227 | 5.602639e-50 | -8.615850e-47 |
| Msa0775440 | Msa0837440 | 0.894937 | 1.540951e-75 | -8.615850e-47 |
| Msa0775440 | Msa0837980 | 0.885838 | 5.756873e-72 | -8.615850e-47 |
| Msa0775440 | Msa0850500 | 0.801663 | 8.097105e-49 | -8.615850e-47 |
| Msa0775440 | Msa0853320 | 0.904669 | 9.642325e-80 | -8.615850e-47 |
| Msa0775440 | Msa0860270 | 0.802797 | 4.730080e-49 | -8.615850e-47 |
| Msa0775440 | Msa0862100 | 0.826600 | 2.482578e-54 | -8.615850e-47 |
| Msa0775440 | Msa0870620 | 0.808423 | 3.119787e-50 | -8.615850e-47 |
| Msa0775440 | Msa0872310 | 0.826436 | 2.715659e-54 | -8.615850e-47 |
| Msa0775440 | Msa0880710 | 0.803310 | 3.705123e-49 | -8.615850e-47 |
| Msa0775440 | Msa0885060 | 0.800901 | 1.159731e-48 | -8.615850e-47 |
| Msa0775440 | Msa0886980 | 0.808859 | 2.518210e-50 | -8.615850e-47 |
| Msa0775440 | Msa0905550 | 0.829538 | 4.867254e-55 | -8.615850e-47 |
| Msa0775440 | Msa0937550 | 0.815627 | 8.390333e-52 | -8.615850e-47 |
| Msa0775440 | Msa0944770 | 0.822130 | 2.792437e-53 | -8.615850e-47 |
| Msa0775440 | Msa0951710 | 0.819971 | 8.776302e-53 | -8.615850e-47 |
| Msa0775440 | Msa0958020 | 0.801086 | 1.062624e-48 | -8.615850e-47 |
| Msa0775440 | Msa0979550 | 0.815617 | 8.434042e-52 | -8.615850e-47 |
| Msa0775440 | Msa0981010 | 0.820261 | 7.532671e-53 | -8.615850e-47 |
| Msa0775440 | Msa0988480 | 0.815383 | 9.507428e-52 | -8.615850e-47 |
| Msa0775440 | Msa0990520 | 0.803474 | 3.425882e-49 | -8.615850e-47 |
| Msa0775440 | Msa1002620 | 0.865381 | 6.154620e-65 | -8.615850e-47 |
| Msa0775440 | Msa1014270 | 0.801016 | 1.098244e-48 | -8.615850e-47 |
| Msa0775440 | Msa1033560 | 0.857863 | 1.221383e-62 | -8.615850e-47 |
| Msa0775440 | Msa1055260 | 0.812119 | 4.976871e-51 | -8.615850e-47 |
| Msa0775440 | Msa1055280 | 0.816131 | 6.476142e-52 | -8.615850e-47 |
| Msa0775440 | Msa1073350 | 0.817870 | 2.635109e-52 | -8.615850e-47 |
| Msa0775440 | Msa1083150 | 0.814643 | 1.387763e-51 | -8.615850e-47 |
| Msa0775440 | Msa1095470 | 0.805971 | 1.031815e-49 | -8.615850e-47 |
| Msa0775440 | Msa1098560 | 0.808902 | 2.464839e-50 | -8.615850e-47 |
| Msa0775440 | Msa1106810 | 0.805341 | 1.399021e-49 | -8.615850e-47 |
| Msa0775440 | Msa1113850 | 0.855121 | 7.801342e-62 | -8.615850e-47 |
| Msa0775440 | Msa1160400 | 0.835371 | 1.744456e-56 | -8.615850e-47 |
| Msa0775440 | Msa1172590 | 0.826701 | 2.348499e-54 | -8.615850e-47 |
| Msa0775440 | Msa1179460 | 0.806976 | 6.333567e-50 | -8.615850e-47 |
| Msa0775440 | Msa1190120 | 0.837139 | 6.200557e-57 | -8.615850e-47 |
| Msa0775440 | Msa1197580 | 0.801538 | 8.587743e-49 | -8.615850e-47 |
| Msa0775440 | Msa1203000 | 0.865072 | 7.698110e-65 | -8.615850e-47 |
| Msa0775440 | Msa1204120 | 0.800965 | 1.125097e-48 | -8.615850e-47 |
| Msa0775440 | Msa1211550 | 0.845435 | 4.067825e-59 | -8.615850e-47 |
| Msa0775440 | Msa1217940 | 0.827943 | 1.183049e-54 | -8.615850e-47 |
| Msa0775440 | Msa1218480 | 0.809781 | 1.596681e-50 | -8.615850e-47 |
| Msa0775440 | Msa1219260 | 0.877942 | 4.190126e-69 | -8.615850e-47 |
| Msa0775440 | Msa1227950 | 0.846041 | 2.786156e-59 | -8.615850e-47 |
| Msa0775440 | Msa1227970 | 0.849447 | 3.214364e-60 | -8.615850e-47 |
| Msa0775440 | Msa1254700 | 0.810749 | 9.872266e-51 | -8.615850e-47 |
| Msa0775440 | Msa1255280 | 0.867707 | 1.122209e-65 | -8.615850e-47 |
| Msa0775440 | Msa1258050 | 0.838646 | 2.540606e-57 | -8.615850e-47 |
| Msa0775440 | Msa1266960 | 0.867765 | 1.074743e-65 | -8.615850e-47 |
| Msa0775440 | Msa1281720 | 0.807878 | 4.076092e-50 | -8.615850e-47 |
| Msa0775440 | Msa1291870 | 0.839280 | 1.741313e-57 | -8.615850e-47 |
| Msa0775440 | Msa1308130 | 0.824377 | 8.344332e-54 | -8.615850e-47 |
| Msa0775440 | Msa1321000 | 0.833826 | 4.265924e-56 | -8.615850e-47 |
| Msa0775440 | Msa1329920 | 0.813736 | 2.201470e-51 | -8.615850e-47 |
| Msa0775440 | Msa1339940 | 0.852114 | 5.709309e-61 | -8.615850e-47 |
| Msa0775440 | Msa1343820 | 0.832251 | 1.051676e-55 | -8.615850e-47 |
| Msa0775440 | Msa1369700 | 0.838663 | 2.515707e-57 | -8.615850e-47 |
| Msa0775440 | Msa1374440 | 0.816700 | 4.831100e-52 | -8.615850e-47 |
| Msa0775440 | Msa1379990 | 0.807781 | 4.273704e-50 | -8.615850e-47 |
| Msa0775440 | Msa1390310 | 0.833402 | 5.443735e-56 | -8.615850e-47 |
| Msa0775440 | Msa1395870 | 0.874211 | 8.061997e-68 | -8.615850e-47 |
| Msa0775440 | Msa1397250 | 0.817356 | 3.440507e-52 | -8.615850e-47 |
| Msa0775440 | Msa1397340 | 0.803012 | 4.271336e-49 | -8.615850e-47 |
| Msa0775440 | Msa1399560 | 0.871131 | 8.630966e-67 | -8.615850e-47 |
| Msa0775440 | Msa1401150 | 0.818194 | 2.225559e-52 | -8.615850e-47 |
| Msa0775440 | Msa1403970 | 0.802473 | 5.517827e-49 | -8.615850e-47 |
| Msa0775440 | Msa1405180 | 0.817580 | 3.063523e-52 | -8.615850e-47 |
| Msa0775440 | Msa1420060 | 0.812599 | 3.909595e-51 | -8.615850e-47 |
| Msa0775440 | Msa1422270 | 0.813842 | 2.085711e-51 | -8.615850e-47 |
| Msa0775440 | Msa1423450 | 0.819545 | 1.098201e-52 | -8.615850e-47 |
| Msa0775440 | Msa1429420 | 0.806199 | 9.235672e-50 | -8.615850e-47 |
| Msa0775440 | Msa1435670 | 0.800141 | 1.656538e-48 | -8.615850e-47 |
| Msa0775440 | Msa1437190 | 0.822352 | 2.480392e-53 | -8.615850e-47 |
| Msa0775440 | Msa1440340 | 0.810333 | 1.214421e-50 | -8.615850e-47 |
| Msa0775440 | Msa1443840 | 0.849391 | 3.333198e-60 | -8.615850e-47 |
| Msa0775440 | Msa1449730 | 0.816425 | 5.567263e-52 | -8.615850e-47 |
| Msa0775440 | Msa1452060 | 0.851324 | 9.559591e-61 | -8.615850e-47 |
| Msa0775440 | Msa1460380 | 0.847893 | 8.670317e-60 | -8.615850e-47 |
| Msa0134130 | Msa0775440 | 0.807940 | 3.953781e-50 | -8.615850e-47 |
| Msa0141100 | Msa0775440 | 0.876614 | 1.213728e-68 | -8.615850e-47 |
| Msa0146020 | Msa0775440 | 0.823041 | 1.714560e-53 | -8.615850e-47 |
| Msa0148340 | Msa0775440 | 0.822529 | 2.256386e-53 | -8.615850e-47 |
| Msa0149560 | Msa0775440 | 0.806003 | 1.015877e-49 | -8.615850e-47 |
| Msa0168100 | Msa0775440 | 0.804664 | 1.937664e-49 | -8.615850e-47 |
| Msa0172350 | Msa0775440 | 0.829575 | 4.766858e-55 | -8.615850e-47 |
| Msa0183750 | Msa0775440 | 0.839801 | 1.274751e-57 | -8.615850e-47 |
| Msa0185480 | Msa0775440 | 0.820679 | 6.037498e-53 | -8.615850e-47 |
| Msa0191040 | Msa0775440 | 0.836992 | 6.760234e-57 | -8.615850e-47 |
| Msa0207000 | Msa0775440 | 0.802227 | 6.201456e-49 | -8.615850e-47 |
| Msa0208520 | Msa0775440 | 0.829402 | 5.252537e-55 | -8.615850e-47 |
| Msa0220300 | Msa0775440 | 0.810753 | 9.856082e-51 | -8.615850e-47 |
| Msa0225600 | Msa0775440 | 0.810946 | 8.949189e-51 | -8.615850e-47 |
| Msa0233340 | Msa0775440 | 0.837321 | 5.570316e-57 | -8.615850e-47 |
| Msa0236440 | Msa0775440 | 0.801972 | 6.994699e-49 | -8.615850e-47 |
| Msa0374850 | Msa0775440 | 0.883296 | 5.061190e-71 | -8.615850e-47 |
| Msa0375090 | Msa0775440 | 0.879813 | 9.172793e-70 | -8.615850e-47 |
| Msa0385670 | Msa0775440 | 0.832533 | 8.953031e-56 | -8.615850e-47 |
| Msa0423360 | Msa0775440 | -0.809534 | 1.804048e-50 | -8.615850e-47 |
| Msa0435670 | Msa0775440 | 0.811237 | 7.740406e-51 | -8.615850e-47 |
| Msa0436460 | Msa0775440 | 0.807231 | 5.593263e-50 | -8.615850e-47 |
| Msa0470340 | Msa0775440 | 0.875037 | 4.225556e-68 | -8.615850e-47 |
| Msa0470860 | Msa0775440 | 0.845951 | 2.948204e-59 | -8.615850e-47 |
| Msa0479680 | Msa0775440 | 0.808148 | 3.571482e-50 | -8.615850e-47 |
| Msa0479700 | Msa0775440 | 0.800773 | 1.231620e-48 | -8.615850e-47 |
| Msa0480950 | Msa0775440 | 0.849430 | 3.251227e-60 | -8.615850e-47 |
| Msa0481110 | Msa0775440 | 0.809321 | 2.004579e-50 | -8.615850e-47 |
| Msa0266450 | Msa0775440 | 0.820335 | 7.243502e-53 | -8.615850e-47 |
| Msa0267760 | Msa0775440 | 0.829012 | 6.529175e-55 | -8.615850e-47 |
| Msa0271040 | Msa0775440 | 0.802157 | 6.409924e-49 | -8.615850e-47 |
| Msa0306130 | Msa0775440 | 0.806538 | 7.836000e-50 | -8.615850e-47 |
| Msa0309350 | Msa0775440 | 0.809288 | 2.037713e-50 | -8.615850e-47 |
| Msa0311690 | Msa0775440 | 0.835106 | 2.035401e-56 | -8.615850e-47 |
| Msa0315250 | Msa0775440 | 0.839089 | 1.951566e-57 | -8.615850e-47 |
| Msa0326540 | Msa0775440 | 0.807852 | 4.129121e-50 | -8.615850e-47 |
| Msa0484690 | Msa0775440 | 0.817628 | 2.988288e-52 | -8.615850e-47 |
| Msa0524120 | Msa0775440 | 0.815115 | 1.090660e-51 | -8.615850e-47 |
| Msa0526700 | Msa0775440 | 0.807040 | 6.138435e-50 | -8.615850e-47 |
| Msa0526710 | Msa0775440 | 0.820150 | 7.986921e-53 | -8.615850e-47 |
| Msa0527590 | Msa0775440 | 0.803350 | 3.634790e-49 | -8.615850e-47 |
| Msa0531430 | Msa0775440 | 0.864788 | 9.447374e-65 | -8.615850e-47 |
| Msa0534570 | Msa0775440 | 0.826059 | 3.338217e-54 | -8.615850e-47 |
| Msa0534590 | Msa0775440 | 0.867652 | 1.168441e-65 | -8.615850e-47 |
| Msa0546380 | Msa0775440 | 0.804007 | 2.656504e-49 | -8.615850e-47 |
| Msa0565600 | Msa0775440 | 0.855632 | 5.536542e-62 | -8.615850e-47 |
| Msa0590800 | Msa0775440 | 0.862197 | 6.008583e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775440 | MtrunA17_Chr5g0429881 | 98.621 | 435 | 5 | 1 | 1 | 434 | 1 | 435 | 0.0 | 868 |
| Msa0775440 | MtrunA17_Chr7g0242351 | 69.877 | 405 | 115 | 4 | 25 | 425 | 34 | 435 | 7.95e-180 | 509 |
| Msa0775440 | MtrunA17_Chr4g0006841 | 71.293 | 317 | 79 | 4 | 123 | 432 | 2 | 313 | 1.04e-145 | 418 |
| Msa0775440 | MtrunA17_Chr2g0334171 | 46.455 | 409 | 201 | 6 | 27 | 425 | 38 | 438 | 4.78e-114 | 341 |
| Msa0775440 | MtrunA17_Chr3g0120501 | 45.169 | 414 | 211 | 6 | 18 | 419 | 15 | 424 | 3.41e-110 | 332 |
| Msa0775440 | MtrunA17_Chr4g0006831 | 60.674 | 89 | 33 | 2 | 25 | 113 | 34 | 120 | 4.36e-29 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0775440 | AT2G38170.3 | 67.237 | 409 | 123 | 5 | 25 | 425 | 32 | 437 | 0.0 | 534 |
| Msa0775440 | AT2G38170.1 | 67.237 | 409 | 123 | 5 | 25 | 425 | 32 | 437 | 0.0 | 534 |
| Msa0775440 | AT3G51860.1 | 68.571 | 420 | 117 | 5 | 25 | 433 | 32 | 447 | 0.0 | 533 |
| Msa0775440 | AT5G01490.2 | 58.333 | 408 | 157 | 3 | 28 | 424 | 35 | 440 | 1.01e-175 | 499 |
| Msa0775440 | AT5G01490.1 | 58.333 | 408 | 157 | 3 | 28 | 424 | 35 | 440 | 1.01e-175 | 499 |
| Msa0775440 | AT3G51860.2 | 68.848 | 382 | 104 | 5 | 25 | 395 | 32 | 409 | 1.18e-167 | 479 |
| Msa0775440 | AT2G38170.2 | 65.839 | 322 | 99 | 5 | 25 | 338 | 32 | 350 | 2.51e-138 | 402 |
| Msa0775440 | AT1G55730.1 | 51.181 | 381 | 171 | 3 | 55 | 425 | 62 | 437 | 1.37e-122 | 363 |
| Msa0775440 | AT1G55730.2 | 51.181 | 381 | 171 | 3 | 55 | 425 | 62 | 437 | 1.37e-122 | 363 |
| Msa0775440 | AT3G13320.1 | 49.606 | 381 | 177 | 3 | 55 | 425 | 62 | 437 | 1.07e-119 | 356 |
| Msa0775440 | AT1G55720.2 | 48.831 | 385 | 183 | 5 | 50 | 425 | 67 | 446 | 5.22e-114 | 342 |
| Msa0775440 | AT1G55720.1 | 48.831 | 385 | 183 | 5 | 50 | 425 | 67 | 446 | 1.71e-113 | 341 |
Find 92 sgRNAs with CRISPR-Local
Find 390 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCACATTTCTTAGTATT+TGG | 0.108992 | 5_2:+52402818 | None:intergenic |
| TATAGACTTGTATATGAAAT+TGG | 0.149048 | 5_2:+52395760 | None:intergenic |
| TGGTCAAGTTCTTGGAAATT+TGG | 0.211542 | 5_2:-52395848 | Msa0775440:three_prime_UTR |
| CGAAGATGGATTTCTATAAA+TGG | 0.218449 | 5_2:-52395969 | Msa0775440:three_prime_UTR |
| TGTTACAGCCTTCACTTTAC+AGG | 0.243931 | 5_2:-52397348 | Msa0775440:intron |
| TTTAATTTCTCTCTTGGGTT+GGG | 0.246076 | 5_2:+52403036 | None:intergenic |
| AAAGCGTATTTGAACATTAA+TGG | 0.249587 | 5_2:+52398904 | None:intergenic |
| TTTACTGTTGCAGATCATTA+TGG | 0.271655 | 5_2:-52396095 | Msa0775440:intron |
| TCAAACCTTCTCTTGGTTCT+AGG | 0.273673 | 5_2:-52399465 | Msa0775440:CDS |
| CATATCTTTGCTCCCTCTTA+AGG | 0.287831 | 5_2:+52399412 | None:intergenic |
| GACTTCAATCTTCTTGAAAC+TGG | 0.289458 | 5_2:-52397392 | Msa0775440:CDS |
| ACTAGGCTGCTTCAGATTCT+TGG | 0.297535 | 5_2:-52398063 | Msa0775440:intron |
| GTTCTCCAAATCTTCATTCA+TGG | 0.298533 | 5_2:+52402930 | None:intergenic |
| TAGAAATCCATCTTCGAATC+TGG | 0.320089 | 5_2:+52395976 | None:intergenic |
| TCGAACCATGAATGAAGATT+TGG | 0.334079 | 5_2:-52402935 | Msa0775440:CDS |
| CATTCTCTCAAACCTTCTCT+TGG | 0.346415 | 5_2:-52399472 | Msa0775440:CDS |
| CTAGGCTGCTTCAGATTCTT+GGG | 0.347536 | 5_2:-52398062 | Msa0775440:intron |
| AATGGGTATACGAATGGATT+TGG | 0.351294 | 5_2:-52397414 | Msa0775440:CDS |
| ATCAACACTAGCTAAAACTT+TGG | 0.353727 | 5_2:+52403009 | None:intergenic |
| TACTCAAATTTCTATGTTTG+TGG | 0.354118 | 5_2:-52397779 | Msa0775440:intron |
| AAAGAAATCAGATATGGTTT+TGG | 0.357259 | 5_2:-52402860 | Msa0775440:CDS |
| CTTCTTGAAACTGGATGTCT+TGG | 0.366676 | 5_2:-52397383 | Msa0775440:CDS |
| AATTTAACATTCGACGCAAT+AGG | 0.370926 | 5_2:+52395687 | None:intergenic |
| TGTGATTGTTGCATGGATAA+TGG | 0.372179 | 5_2:-52397432 | Msa0775440:CDS |
| CAAGAGAAGGTTTGAGAGAA+TGG | 0.377825 | 5_2:+52399473 | None:intergenic |
| ATAATGCAGGACATATCTTT+AGG | 0.381827 | 5_2:-52397820 | Msa0775440:intron |
| TGACAATTGAAGAGTAGAAT+TGG | 0.381862 | 5_2:+52398858 | None:intergenic |
| CATGCAACAATCACACTTGA+TGG | 0.383884 | 5_2:+52397440 | None:intergenic |
| GTTGTCAAGTTCTCCTTGCT+TGG | 0.384448 | 5_2:-52399498 | Msa0775440:CDS |
| ATTTAACATTCGACGCAATA+GGG | 0.392446 | 5_2:+52395688 | None:intergenic |
| ATAGACTTGTATATGAAATT+GGG | 0.397200 | 5_2:+52395761 | None:intergenic |
| TGTGAGAAAGAAATCAGATA+TGG | 0.399485 | 5_2:-52402866 | Msa0775440:CDS |
| CTAGGCAGCTCACTCCTTTG+TGG | 0.409952 | 5_2:-52399447 | Msa0775440:CDS |
| ATGTTCAAATACGCTTTGGC+TGG | 0.415484 | 5_2:-52398898 | Msa0775440:CDS |
| TAGATATACTTACTGATTTG+TGG | 0.418490 | 5_2:+52397143 | None:intergenic |
| TTAATTTCTCTCTTGGGTTG+GGG | 0.422008 | 5_2:+52403037 | None:intergenic |
| GCATATTTCACCGGACCAAC+AGG | 0.422062 | 5_2:-52400627 | Msa0775440:intron |
| ATTAATGTTCAAATACGCTT+TGG | 0.427152 | 5_2:-52398902 | Msa0775440:CDS |
| ATTAGTACTCTTTACCTCAA+TGG | 0.429999 | 5_2:+52398193 | None:intergenic |
| GTGCTTTCTGAGTATGTTGT+GGG | 0.448183 | 5_2:-52398218 | Msa0775440:CDS |
| TCTTCATTCATGGTTCGAAA+TGG | 0.450144 | 5_2:+52402940 | None:intergenic |
| GTGATTGTTGCATGGATAAT+GGG | 0.451478 | 5_2:-52397431 | Msa0775440:CDS |
| GTGGCTTAGCAAACCTTAAG+AGG | 0.457666 | 5_2:-52399425 | Msa0775440:CDS |
| CATATCTTTAGGTGTTGCTA+TGG | 0.459702 | 5_2:-52397809 | Msa0775440:CDS |
| AAATATGAAAGAGGTTATGT+TGG | 0.461852 | 5_2:-52402794 | Msa0775440:CDS |
| TTGGAGTGCATTTAGTTGGT+TGG | 0.464416 | 5_2:-52398264 | Msa0775440:CDS |
| TCTGCAGCATTCCCAACAAT+TGG | 0.469344 | 5_2:+52398004 | None:intergenic |
| ATTTGCTTACAAGAACAAAC+TGG | 0.472635 | 5_2:-52397963 | Msa0775440:intron |
| TGAACATTAATGGCAGCAAA+TGG | 0.479920 | 5_2:+52398914 | None:intergenic |
| AAATCAGCAGCAACAGCTAA+AGG | 0.486221 | 5_2:+52402739 | None:intergenic |
| TTCAAATACGCTTTGGCTGG+GGG | 0.492117 | 5_2:-52398895 | Msa0775440:CDS |
| GTTCAAATACGCTTTGGCTG+GGG | 0.504789 | 5_2:-52398896 | Msa0775440:CDS |
| GAGTGCATTTAGTTGGTTGG+TGG | 0.506775 | 5_2:-52398261 | Msa0775440:CDS |
| TGTTCAAATACGCTTTGGCT+GGG | 0.508594 | 5_2:-52398897 | Msa0775440:CDS |
| CGTCACTCCAGATTCGAAGA+TGG | 0.510121 | 5_2:-52395983 | Msa0775440:three_prime_UTR |
| ATGTGAATGTTTCAGTTGGA+GGG | 0.511627 | 5_2:-52399596 | Msa0775440:intron |
| GGAAGCTGACACGTTCAGCT+AGG | 0.511657 | 5_2:+52400836 | None:intergenic |
| GACGAATTTCAATCATCCGC+AGG | 0.512841 | 5_2:+52396002 | None:intergenic |
| AGTAATCGTACCTGTTGGTC+CGG | 0.514360 | 5_2:+52400617 | None:intergenic |
| TGTGCTTTCTGAGTATGTTG+TGG | 0.515082 | 5_2:-52398219 | Msa0775440:CDS |
| AGTGCATTTAGTTGGTTGGT+GGG | 0.517025 | 5_2:-52398260 | Msa0775440:CDS |
| AATATGAAAGAGGTTATGTT+GGG | 0.517574 | 5_2:-52402793 | Msa0775440:CDS |
| TGTGATGACAAATATGAAAG+AGG | 0.520832 | 5_2:-52402803 | Msa0775440:CDS |
| GAAGCTGACACGTTCAGCTA+GGG | 0.534246 | 5_2:+52400837 | None:intergenic |
| GGAACTTCACACTATTTGAA+AGG | 0.534618 | 5_2:-52397224 | Msa0775440:CDS |
| ATGAATTAATTCCATGAATG+TGG | 0.538219 | 5_2:+52395789 | None:intergenic |
| TAATTACACTTACCCTTCCA+AGG | 0.541293 | 5_2:+52402710 | None:intergenic |
| GCAACAGCTAAAGGAACAGC+CGG | 0.546306 | 5_2:+52402748 | None:intergenic |
| ATATCTTTAGGTGTTGCTAT+GGG | 0.547481 | 5_2:-52397808 | Msa0775440:CDS |
| GGCAGCTCACTCCTTTGTGG+TGG | 0.549103 | 5_2:-52399444 | Msa0775440:CDS |
| TCTCACAGCTTCAGTTTCGA+AGG | 0.549530 | 5_2:+52395934 | None:intergenic |
| AGGCAAATTGCATATTTCAC+CGG | 0.552583 | 5_2:-52400636 | Msa0775440:CDS |
| TTGGTTGGTGGGTATGACAT+TGG | 0.564585 | 5_2:-52398249 | Msa0775440:CDS |
| CATCAAGTGTGATTGTTGCA+TGG | 0.570606 | 5_2:-52397439 | Msa0775440:CDS |
| GGGAATGCTGCAGAACATGC+TGG | 0.585056 | 5_2:-52397995 | Msa0775440:CDS |
| TAATATTGCTATGATCATCT+CGG | 0.588080 | 5_2:+52399545 | None:intergenic |
| GAATTTGATGAAATGTTATG+TGG | 0.590212 | 5_2:+52402892 | None:intergenic |
| TGAGAGAATGGAACCAAGCA+AGG | 0.600148 | 5_2:+52399485 | None:intergenic |
| ATGGATAATGGGTATACGAA+TGG | 0.600851 | 5_2:-52397420 | Msa0775440:CDS |
| ACGACGATAGCTTCAAAGCA+TGG | 0.608256 | 5_2:+52396067 | None:intergenic |
| CTAGGGGAGCAAGTCCAAGT+AGG | 0.616205 | 5_2:+52400854 | None:intergenic |
| ATTAAATGAACAGAAACAAG+CGG | 0.618891 | 5_2:-52398974 | Msa0775440:intron |
| ACGAATTTCAATCATCCGCA+GGG | 0.621934 | 5_2:+52396003 | None:intergenic |
| AAGCTGACACGTTCAGCTAG+GGG | 0.628561 | 5_2:+52400838 | None:intergenic |
| TAGGCTGCTTCAGATTCTTG+GGG | 0.629621 | 5_2:-52398061 | Msa0775440:CDS |
| AGCTGCCTAGAACCAAGAGA+AGG | 0.634661 | 5_2:+52399460 | None:intergenic |
| TGGCTTAGCAAACCTTAAGA+GGG | 0.662643 | 5_2:-52399424 | Msa0775440:CDS |
| GGGCTTCTAAATGCAACTTG+TGG | 0.683635 | 5_2:-52399576 | Msa0775440:CDS |
| TGTGCAGACCTGTAAAGTGA+AGG | 0.687046 | 5_2:+52397340 | None:intergenic |
| ACATGCAAACTTACTCAGTG+AGG | 0.690735 | 5_2:+52400815 | None:intergenic |
| GGTTTGCTAAGCCACCACAA+AGG | 0.707409 | 5_2:+52399433 | None:intergenic |
| GTATGTTGTGGGAACCATTG+AGG | 0.709062 | 5_2:-52398207 | Msa0775440:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTTATAATTAAAAAAT+TGG | + | chr5_2:52396823-52396842 | None:intergenic | 0.0% |
| !!! | ATTAAAAAAAAAAATATTTT+TGG | - | chr5_2:52398687-52398706 | Msa0775440:intron | 0.0% |
| !!! | ACAAATGAAATTTAAAATAT+GGG | - | chr5_2:52396615-52396634 | Msa0775440:intron | 10.0% |
| !!! | TAAGAATTTTTTTCTTTTTT+TGG | - | chr5_2:52396915-52396934 | Msa0775440:intron | 10.0% |
| !!! | TTAAAAATTGTATATTTTAG+GGG | + | chr5_2:52398459-52398478 | None:intergenic | 10.0% |
| !! | AAAAAATTATAAGTGATTAA+GGG | + | chr5_2:52399001-52399020 | None:intergenic | 10.0% |
| !! | AAAAAAATTATAAGTGATTA+AGG | + | chr5_2:52399002-52399021 | None:intergenic | 10.0% |
| !!! | AATTTTAATTTAAATGTGAT+TGG | + | chr5_2:52400600-52400619 | None:intergenic | 10.0% |
| !! | AAAATTCAAAATTAGATTAA+TGG | - | chr5_2:52400614-52400633 | Msa0775440:intron | 10.0% |
| !! | AAATTCAAAATTAGATTAAT+GGG | - | chr5_2:52400615-52400634 | Msa0775440:intron | 10.0% |
| !!! | TTATTTTATTATGCATAAAA+GGG | + | chr5_2:52400653-52400672 | None:intergenic | 10.0% |
| !!! | ATCCTTATTTTATTTTTAAA+TGG | - | chr5_2:52401224-52401243 | Msa0775440:intron | 10.0% |
| !! | ATTAGAGATTAATATATATA+TGG | + | chr5_2:52401725-52401744 | None:intergenic | 10.0% |
| !!! | TATATATTAATCTCTAATTT+TGG | - | chr5_2:52401727-52401746 | Msa0775440:intron | 10.0% |
| !!! | ATATATTAATCTCTAATTTT+GGG | - | chr5_2:52401728-52401747 | Msa0775440:intron | 10.0% |
| !!! | ATTTTCTTTCAAAAAATTAA+AGG | - | chr5_2:52402438-52402457 | Msa0775440:intron | 10.0% |
| !!! | TTTTCTTTCAAAAAATTAAA+GGG | - | chr5_2:52402439-52402458 | Msa0775440:intron | 10.0% |
| !! | TTATAGATAATTTATCCATT+TGG | + | chr5_2:52396421-52396440 | None:intergenic | 15.0% |
| !!! | CATATTTTAAATTTCATTTG+TGG | + | chr5_2:52396616-52396635 | None:intergenic | 15.0% |
| !!! | CACAAATGAAATTTAAAATA+TGG | - | chr5_2:52396614-52396633 | Msa0775440:intron | 15.0% |
| !!! | GATAATGATAAAGATTTTTT+AGG | + | chr5_2:52396886-52396905 | None:intergenic | 15.0% |
| !! | AATAATATACTAAAAACCTT+AGG | - | chr5_2:52397084-52397103 | Msa0775440:intron | 15.0% |
| !!! | ACAATTTTTAATTAATCCTA+AGG | + | chr5_2:52397103-52397122 | None:intergenic | 15.0% |
| !! | TTAGGATTAATTAAAAATTG+TGG | - | chr5_2:52397102-52397121 | Msa0775440:intron | 15.0% |
| !! | ATGTATATATTGTAAAACTA+TGG | + | chr5_2:52397178-52397197 | None:intergenic | 15.0% |
| !! | AATGTTAATATATATATGTC+AGG | - | chr5_2:52397478-52397497 | Msa0775440:intron | 15.0% |
| !! | ATGTTAATATATATATGTCA+GGG | - | chr5_2:52397479-52397498 | Msa0775440:intron | 15.0% |
| !! | CTATTAAAAATGAAAACTTT+GGG | - | chr5_2:52397620-52397639 | Msa0775440:intron | 15.0% |
| !! | TAAATATATGTTTATAAGTG+GGG | + | chr5_2:52397724-52397743 | None:intergenic | 15.0% |
| !! | CTAAATATATGTTTATAAGT+GGG | + | chr5_2:52397725-52397744 | None:intergenic | 15.0% |
| !!! | ATTATTTTAGCTCTTAATTT+AGG | + | chr5_2:52399419-52399438 | None:intergenic | 15.0% |
| !! | TAATAAATCTAGTGATAAAA+AGG | - | chr5_2:52399472-52399491 | Msa0775440:CDS | 15.0% |
| !! | AGTATAGTAATTAAATTATC+TGG | + | chr5_2:52400047-52400066 | None:intergenic | 15.0% |
| !!! | GTTATTTTATTATGCATAAA+AGG | + | chr5_2:52400654-52400673 | None:intergenic | 15.0% |
| !! | CACCATTTAAAAATAAAATA+AGG | + | chr5_2:52401229-52401248 | None:intergenic | 15.0% |
| !!! | CTTATTTTATTTTTAAATGG+TGG | - | chr5_2:52401227-52401246 | Msa0775440:intron | 15.0% |
| !!! | GATTTTGTTAAATTTTTTGT+AGG | - | chr5_2:52401486-52401505 | Msa0775440:intron | 15.0% |
| !! | TACTTAAATTTATTTCACAA+AGG | + | chr5_2:52401775-52401794 | None:intergenic | 15.0% |
| !!! | AAAACAAATACTTTTTTCTT+TGG | + | chr5_2:52402081-52402100 | None:intergenic | 15.0% |
| !!! | AAAAAAGTATTTGTTTTTCT+TGG | - | chr5_2:52402084-52402103 | Msa0775440:intron | 15.0% |
| !! | GATTATAGAAACTTAAAAAA+TGG | - | chr5_2:52402226-52402245 | Msa0775440:intron | 15.0% |
| !!! | TTTCATTTCTAAGTTTTTTT+TGG | - | chr5_2:52402324-52402343 | Msa0775440:intron | 15.0% |
| !!! | TTCATTTCTAAGTTTTTTTT+GGG | - | chr5_2:52402325-52402344 | Msa0775440:intron | 15.0% |
| !!! | TAAGTTATTTTAAAGAATAG+TGG | - | chr5_2:52402359-52402378 | Msa0775440:intron | 15.0% |
| !!! | GTAATGTTTTTATTTTTTGA+GGG | + | chr5_2:52403020-52403039 | None:intergenic | 15.0% |
| !!! | TGTAATGTTTTTATTTTTTG+AGG | + | chr5_2:52403021-52403040 | None:intergenic | 15.0% |
| !!! | GATTTTTTAATTTCTCTCTT+GGG | + | chr5_2:52395707-52395726 | None:intergenic | 20.0% |
| !!! | TTTGTTAGTTTTTTAAACTG+AGG | - | chr5_2:52396104-52396123 | Msa0775440:intron | 20.0% |
| !!! | TCTTTTAGTTCATAAATATG+TGG | - | chr5_2:52396584-52396603 | Msa0775440:intron | 20.0% |
| !! | AGTATTTATATCTAACTAAG+TGG | + | chr5_2:52397425-52397444 | None:intergenic | 20.0% |
| !!! | CCAAAGTTTTCATTTTTAAT+AGG | + | chr5_2:52397622-52397641 | None:intergenic | 20.0% |
| !! | CCTATTAAAAATGAAAACTT+TGG | - | chr5_2:52397619-52397638 | Msa0775440:intron | 20.0% |
| !! | CCTAAATATATGTTTATAAG+TGG | + | chr5_2:52397726-52397745 | None:intergenic | 20.0% |
| !! | CCACTTATAAACATATATTT+AGG | - | chr5_2:52397723-52397742 | Msa0775440:intron | 20.0% |
| !!! | AACATTCACATAAATTGTTT+TGG | + | chr5_2:52399130-52399149 | None:intergenic | 20.0% |
| !! | TAATACACAAATATTCGATA+AGG | - | chr5_2:52399577-52399596 | Msa0775440:CDS | 20.0% |
| !! | TTAAGTATTATCTTCATACA+TGG | - | chr5_2:52400272-52400291 | Msa0775440:intron | 20.0% |
| !!! | ATGTAAAAAGTTTTACGTTA+TGG | - | chr5_2:52400298-52400317 | Msa0775440:intron | 20.0% |
| !!! | GAGTACTAATATGTTTATTT+TGG | - | chr5_2:52400555-52400574 | Msa0775440:intron | 20.0% |
| !! | CTTTGTAAATAATTTGGATT+TGG | + | chr5_2:52400809-52400828 | None:intergenic | 20.0% |
| !!! | ATTCAGCTTTGTAAATAATT+TGG | + | chr5_2:52400815-52400834 | None:intergenic | 20.0% |
| !! | ATTATCCAATAATCAATTTC+AGG | - | chr5_2:52401270-52401289 | Msa0775440:intron | 20.0% |
| !!! | TTGTTAAATTTTTTGTAGGA+TGG | - | chr5_2:52401490-52401509 | Msa0775440:intron | 20.0% |
| !!! | TTGTACTACTATTTTTCATA+TGG | + | chr5_2:52401691-52401710 | None:intergenic | 20.0% |
| !!! | TTTTTTTGTTTGTTTTCACT+TGG | + | chr5_2:52401798-52401817 | None:intergenic | 20.0% |
| !! | TATAAATAGGAAGATATGTT+TGG | + | chr5_2:52402126-52402145 | None:intergenic | 20.0% |
| !! | AAACATATCTTCCTATTTAT+AGG | - | chr5_2:52402125-52402144 | Msa0775440:intron | 20.0% |
| !! | ACAAATAAATTACAAGATCT+TGG | - | chr5_2:52402494-52402513 | Msa0775440:intron | 20.0% |
| !! | ACAAAAAAGAACAAAAAACT+TGG | + | chr5_2:52402604-52402623 | None:intergenic | 20.0% |
| !!! | TTGAATACTTGTATTTTTCT+TGG | - | chr5_2:52402849-52402868 | Msa0775440:CDS | 20.0% |
| !!! | TTGGTTTAACATTATCTTTT+TGG | - | chr5_2:52402906-52402925 | Msa0775440:CDS | 20.0% |
| !! | ATAGACTTGTATATGAAATT+GGG | + | chr5_2:52402977-52402996 | None:intergenic | 20.0% |
| !! | TATAGACTTGTATATGAAAT+TGG | + | chr5_2:52402978-52402997 | None:intergenic | 20.0% |
| !!! | GGATTTTTTAATTTCTCTCT+TGG | + | chr5_2:52395708-52395727 | None:intergenic | 25.0% |
| ! | GAATTTGATGAAATGTTATG+TGG | + | chr5_2:52395846-52395865 | None:intergenic | 25.0% |
| !! | AAAGAAATCAGATATGGTTT+TGG | - | chr5_2:52395875-52395894 | Msa0775440:three_prime_UTR | 25.0% |
| !!! | TTTTGGTGACAAATAATGTT+CGG | - | chr5_2:52395892-52395911 | Msa0775440:three_prime_UTR | 25.0% |
| ! | TCATCACATTTCTTAGTATT+TGG | + | chr5_2:52395920-52395939 | None:intergenic | 25.0% |
| ! | AAATATGAAAGAGGTTATGT+TGG | - | chr5_2:52395941-52395960 | Msa0775440:three_prime_UTR | 25.0% |
| ! | AATATGAAAGAGGTTATGTT+GGG | - | chr5_2:52395942-52395961 | Msa0775440:three_prime_UTR | 25.0% |
| ! | GAAGTCATAGAATGAATTAA+TGG | + | chr5_2:52396054-52396073 | None:intergenic | 25.0% |
| ! | ACTTATTAGATTAGAAGTCA+TGG | + | chr5_2:52396199-52396218 | None:intergenic | 25.0% |
| !!! | ATGCGATGTATTTTTTTTGA+GGG | + | chr5_2:52396392-52396411 | None:intergenic | 25.0% |
| !!! | TATGCGATGTATTTTTTTTG+AGG | + | chr5_2:52396393-52396412 | None:intergenic | 25.0% |
| ! | GAACATACAATATGATGATA+TGG | + | chr5_2:52396536-52396555 | None:intergenic | 25.0% |
| ! | TTAGTTCATAAATATGTGGA+CGG | - | chr5_2:52396588-52396607 | Msa0775440:intron | 25.0% |
| !! | ATTTTTACTGCTCAAAGAAA+TGG | + | chr5_2:52396643-52396662 | None:intergenic | 25.0% |
| !! | TCTCATGTCAATTATTTTCA+AGG | - | chr5_2:52397314-52397333 | Msa0775440:intron | 25.0% |
| ! | AATGCTAAAATTTACATGTC+AGG | - | chr5_2:52397373-52397392 | Msa0775440:CDS | 25.0% |
| ! | ATGCTAAAATTTACATGTCA+GGG | - | chr5_2:52397374-52397393 | Msa0775440:CDS | 25.0% |
| ! | TTAAAAATGAAAACTTTGGG+AGG | - | chr5_2:52397623-52397642 | Msa0775440:intron | 25.0% |
| !!! | AACTACGATGTATTTTGAAA+TGG | + | chr5_2:52398185-52398204 | None:intergenic | 25.0% |
| ! | AGTAAAAAAAATATGGGCAA+AGG | - | chr5_2:52398299-52398318 | Msa0775440:CDS | 25.0% |
| !! | TTCATAGATATTACTGCTTT+TGG | + | chr5_2:52398371-52398390 | None:intergenic | 25.0% |
| ! | AAAAGCAGTAATATCTATGA+AGG | - | chr5_2:52398370-52398389 | Msa0775440:intron | 25.0% |
| ! | TTTGCCATATATCCATTATA+TGG | - | chr5_2:52398548-52398567 | Msa0775440:intron | 25.0% |
| ! | TTGCCATATATCCATTATAT+GGG | - | chr5_2:52398549-52398568 | Msa0775440:intron | 25.0% |
| ! | TGTTTACAAATCAAATGTTG+TGG | + | chr5_2:52398624-52398643 | None:intergenic | 25.0% |
| !! | GGAGTTTTTGATATATTTGT+GGG | + | chr5_2:52398972-52398991 | None:intergenic | 25.0% |
| !! | TGGAGTTTTTGATATATTTG+TGG | + | chr5_2:52398973-52398992 | None:intergenic | 25.0% |
| ! | ATAAGTGATTAAGGGTAAAA+TGG | + | chr5_2:52398993-52399012 | None:intergenic | 25.0% |
| ! | GCTCAGTTTATTGAAATTTA+TGG | + | chr5_2:52399104-52399123 | None:intergenic | 25.0% |
| ! | ATTTATGTGAATGTTTCAGT+TGG | - | chr5_2:52399135-52399154 | Msa0775440:intron | 25.0% |
| ! | TAATATTGCTATGATCATCT+CGG | + | chr5_2:52399193-52399212 | None:intergenic | 25.0% |
| ! | GCACAATGTGTAATTAAAAA+GGG | + | chr5_2:52399372-52399391 | None:intergenic | 25.0% |
| ! | TGCACAATGTGTAATTAAAA+AGG | + | chr5_2:52399373-52399392 | None:intergenic | 25.0% |
| !!! | TTTTCTTAATTTGCGTGAAA+TGG | - | chr5_2:52399638-52399657 | Msa0775440:intron | 25.0% |
| ! | TCAAATATGTCGATAATTGT+GGG | - | chr5_2:52399661-52399680 | Msa0775440:intron | 25.0% |
| ! | ATTAAATGAACAGAAACAAG+CGG | - | chr5_2:52399761-52399780 | Msa0775440:intron | 25.0% |
| ! | AAAGCGTATTTGAACATTAA+TGG | + | chr5_2:52399834-52399853 | None:intergenic | 25.0% |
| ! | ATTAATGTTCAAATACGCTT+TGG | - | chr5_2:52399833-52399852 | Msa0775440:intron | 25.0% |
| !!! | TTTTTCGATGAGTTTTCAAT+TGG | + | chr5_2:52399953-52399972 | None:intergenic | 25.0% |
| ! | AAAAATATTTGATGCACAAG+AGG | - | chr5_2:52399968-52399987 | Msa0775440:intron | 25.0% |
| ! | TTGATGTATCAATACATCAT+AGG | - | chr5_2:52400161-52400180 | Msa0775440:intron | 25.0% |
| !! | ATAATTTTGCTACCAATTGT+TGG | - | chr5_2:52400719-52400738 | Msa0775440:intron | 25.0% |
| !! | TAATTTTGCTACCAATTGTT+GGG | - | chr5_2:52400720-52400739 | Msa0775440:intron | 25.0% |
| !! | TATTTGGTTTACTATAATGC+AGG | - | chr5_2:52400902-52400921 | Msa0775440:intron | 25.0% |
| ! | TACTCAAATTTCTATGTTTG+TGG | - | chr5_2:52400956-52400975 | Msa0775440:intron | 25.0% |
| ! | AAACAAAGTTAGTATACTCT+AGG | + | chr5_2:52401192-52401211 | None:intergenic | 25.0% |
| ! | ATTGGATAATCCAAATTTAG+TGG | + | chr5_2:52401260-52401279 | None:intergenic | 25.0% |
| !!! | TAGATATACTTACTGATTTG+TGG | + | chr5_2:52401595-52401614 | None:intergenic | 25.0% |
| ! | ATTAAACTCTTTCATGTGAA+AGG | - | chr5_2:52401854-52401873 | Msa0775440:intron | 25.0% |
| ! | TTAAACTCTTTCATGTGAAA+GGG | - | chr5_2:52401855-52401874 | Msa0775440:intron | 25.0% |
| !!! | ATTGTAATCTCACTTTTTTG+TGG | + | chr5_2:52401914-52401933 | None:intergenic | 25.0% |
| ! | CATATTCATCTCCTATAAAT+AGG | + | chr5_2:52402139-52402158 | None:intergenic | 25.0% |
| ! | CATATTCATCTCCTATAAAT+AGG | + | chr5_2:52402139-52402158 | None:intergenic | 25.0% |
| ! | CTATTTATAGGAGATGAATA+TGG | - | chr5_2:52402137-52402156 | Msa0775440:intron | 25.0% |
| ! | TATGATGTTGAGAGTTAAAA+TGG | + | chr5_2:52402278-52402297 | None:intergenic | 25.0% |
| ! | CAAGTAATCACAAAAATTGA+CGG | + | chr5_2:52402544-52402563 | None:intergenic | 25.0% |
| !! | TTGTATTTTTCTTGGCAATA+AGG | - | chr5_2:52402857-52402876 | Msa0775440:CDS | 25.0% |
| ! | ATGAATTAATTCCATGAATG+TGG | + | chr5_2:52402949-52402968 | None:intergenic | 25.0% |
| ! | TTTAATTTCTCTCTTGGGTT+GGG | + | chr5_2:52395702-52395721 | None:intergenic | 30.0% |
| !!! | TTTTAATTTCTCTCTTGGGT+TGG | + | chr5_2:52395703-52395722 | None:intergenic | 30.0% |
| ATCAACACTAGCTAAAACTT+TGG | + | chr5_2:52395729-52395748 | None:intergenic | 30.0% | |
| TGTGAGAAAGAAATCAGATA+TGG | - | chr5_2:52395869-52395888 | Msa0775440:three_prime_UTR | 30.0% | |
| TGTGATGACAAATATGAAAG+AGG | - | chr5_2:52395932-52395951 | Msa0775440:three_prime_UTR | 30.0% | |
| !! | TGATTTTTATAGCCTTGGAA+GGG | - | chr5_2:52396013-52396032 | Msa0775440:three_prime_UTR | 30.0% |
| !!! | AAGATGGTTTTGTGATTACT+GGG | + | chr5_2:52396170-52396189 | None:intergenic | 30.0% |
| !!! | AAAGATGGTTTTGTGATTAC+TGG | + | chr5_2:52396171-52396190 | None:intergenic | 30.0% |
| TAGTTCATAAATATGTGGAC+GGG | - | chr5_2:52396589-52396608 | Msa0775440:intron | 30.0% | |
| AATATACATACCCTTATACG+AGG | - | chr5_2:52396694-52396713 | Msa0775440:intron | 30.0% | |
| ATATACATACCCTTATACGA+GGG | - | chr5_2:52396695-52396714 | Msa0775440:intron | 30.0% | |
| GGTAGAAATCGATGTATTAT+AGG | - | chr5_2:52396979-52396998 | Msa0775440:intron | 30.0% | |
| ATATAAAGTTGTAGCTCAAG+TGG | - | chr5_2:52397219-52397238 | Msa0775440:CDS | 30.0% | |
| TTATTTAAGTCCCTTAACTG+TGG | - | chr5_2:52397253-52397272 | Msa0775440:intron | 30.0% | |
| ! | TTTTGTATGATTGTGTTCTG+AGG | + | chr5_2:52397679-52397698 | None:intergenic | 30.0% |
| ! | TCATACAAAATCGACTTATG+AGG | - | chr5_2:52397689-52397708 | Msa0775440:intron | 30.0% |
| ! | TCTTACTGAAAATTTTCACC+TGG | - | chr5_2:52398061-52398080 | Msa0775440:CDS | 30.0% |
| TGATCGCTTTATACATGTTA+AGG | - | chr5_2:52398204-52398223 | Msa0775440:intron | 30.0% | |
| GATCGCTTTATACATGTTAA+GGG | - | chr5_2:52398205-52398224 | Msa0775440:intron | 30.0% | |
| AAAAAAATATGGGCAAAGGT+AGG | - | chr5_2:52398303-52398322 | Msa0775440:CDS | 30.0% | |
| AGGTTATGTGAAAATGTGTA+TGG | - | chr5_2:52398323-52398342 | Msa0775440:intron | 30.0% | |
| CTATTAATAATAAGAGAGCC+GGG | + | chr5_2:52398435-52398454 | None:intergenic | 30.0% | |
| CCTATTAATAATAAGAGAGC+CGG | + | chr5_2:52398436-52398455 | None:intergenic | 30.0% | |
| !! | ACTCCCATATAATGGATATA+TGG | + | chr5_2:52398555-52398574 | None:intergenic | 30.0% |
| !!! | AATATTTTTGGCCCCAAAAT+TGG | - | chr5_2:52398699-52398718 | Msa0775440:intron | 30.0% |
| !!! | ATATTTTTGGCCCCAAAATT+GGG | - | chr5_2:52398700-52398719 | Msa0775440:intron | 30.0% |
| TTCTGGTATCAAATACATGT+CGG | + | chr5_2:52398860-52398879 | None:intergenic | 30.0% | |
| TTGATATATTTGTGGGTGTA+GGG | + | chr5_2:52398965-52398984 | None:intergenic | 30.0% | |
| TTTGATATATTTGTGGGTGT+AGG | + | chr5_2:52398966-52398985 | None:intergenic | 30.0% | |
| TTACACATTGTGCATACTAA+AGG | - | chr5_2:52399379-52399398 | Msa0775440:intron | 30.0% | |
| TAAAATCGCAAGTAAACTCA+TGG | - | chr5_2:52399499-52399518 | Msa0775440:CDS | 30.0% | |
| CAAACTGATATCTAGACTTT+CGG | + | chr5_2:52399537-52399556 | None:intergenic | 30.0% | |
| GTCAAATATGTCGATAATTG+TGG | - | chr5_2:52399660-52399679 | Msa0775440:intron | 30.0% | |
| !! | AAATTCATTGCTTTTGTTGC+TGG | - | chr5_2:52399788-52399807 | Msa0775440:intron | 30.0% |
| !! | AATTCATTGCTTTTGTTGCT+GGG | - | chr5_2:52399789-52399808 | Msa0775440:intron | 30.0% |
| TGACAATTGAAGAGTAGAAT+TGG | + | chr5_2:52399880-52399899 | None:intergenic | 30.0% | |
| ATTTAATCCACTTATGTGTG+AGG | - | chr5_2:52400398-52400417 | Msa0775440:intron | 30.0% | |
| ! | AAAAAGCAGTGATAGGATTT+TGG | - | chr5_2:52400452-52400471 | Msa0775440:intron | 30.0% |
| ATTAGTACTCTTTACCTCAA+TGG | + | chr5_2:52400545-52400564 | None:intergenic | 30.0% | |
| ATTTGCTTACAAGAACAAAC+TGG | - | chr5_2:52400772-52400791 | Msa0775440:intron | 30.0% | |
| !! | CTGGCTTTAAAATTTCTCAA+AGG | - | chr5_2:52400876-52400895 | Msa0775440:CDS | 30.0% |
| !! | AATTTCTCAAAGGCACTATT+TGG | - | chr5_2:52400886-52400905 | Msa0775440:intron | 30.0% |
| ATAATGCAGGACATATCTTT+AGG | - | chr5_2:52400915-52400934 | Msa0775440:intron | 30.0% | |
| !! | ATATCTTTAGGTGTTGCTAT+GGG | - | chr5_2:52400927-52400946 | Msa0775440:intron | 30.0% |
| TGGAACCTGAAATTGATTAT+TGG | + | chr5_2:52401278-52401297 | None:intergenic | 30.0% | |
| AGAGAAAGTAGAATGTATGA+AGG | + | chr5_2:52401424-52401443 | None:intergenic | 30.0% | |
| GTGTTCCTAATCCTATTTAT+AGG | - | chr5_2:52402181-52402200 | Msa0775440:intron | 30.0% | |
| CATCTCCTATAAATAGGATT+AGG | + | chr5_2:52402189-52402208 | None:intergenic | 30.0% | |
| TTTACTGTTGCAGATCATTA+TGG | - | chr5_2:52402640-52402659 | Msa0775440:intron | 30.0% | |
| !! | TCAGATTGTTTTTCTCACAA+CGG | + | chr5_2:52402712-52402731 | None:intergenic | 30.0% |
| ! | CGAAGATGGATTTCTATAAA+TGG | - | chr5_2:52402766-52402785 | Msa0775440:CDS | 30.0% |
| !!! | GTTTTTATTTTTTGAGGGAG+TGG | + | chr5_2:52403015-52403034 | None:intergenic | 30.0% |
| ATTTAACATTCGACGCAATA+GGG | + | chr5_2:52403050-52403069 | None:intergenic | 30.0% | |
| AATTTAACATTCGACGCAAT+AGG | + | chr5_2:52403051-52403070 | None:intergenic | 30.0% | |
| ! | TTAATTTCTCTCTTGGGTTG+GGG | + | chr5_2:52395701-52395720 | None:intergenic | 35.0% |
| TCTTCATTCATGGTTCGAAA+TGG | + | chr5_2:52395798-52395817 | None:intergenic | 35.0% | |
| TCGAACCATGAATGAAGATT+TGG | - | chr5_2:52395800-52395819 | Msa0775440:three_prime_UTR | 35.0% | |
| GTTCTCCAAATCTTCATTCA+TGG | + | chr5_2:52395808-52395827 | None:intergenic | 35.0% | |
| !!! | TAAGCTTGTTGTGCTTTTTC+CGG | - | chr5_2:52395968-52395987 | Msa0775440:three_prime_UTR | 35.0% |
| !! | CTGATTTTTATAGCCTTGGA+AGG | - | chr5_2:52396012-52396031 | Msa0775440:three_prime_UTR | 35.0% |
| TAATTACACTTACCCTTCCA+AGG | + | chr5_2:52396028-52396047 | None:intergenic | 35.0% | |
| !!! | AGATGGTTTTGTGATTACTG+GGG | + | chr5_2:52396169-52396188 | None:intergenic | 35.0% |
| GAAGTCATGGCATATAAAGA+TGG | + | chr5_2:52396186-52396205 | None:intergenic | 35.0% | |
| ACATCGCATAATCATCCAAA+TGG | - | chr5_2:52396403-52396422 | Msa0775440:intron | 35.0% | |
| ! | CGAGCTTTCTTGCAATTTTA+TGG | - | chr5_2:52396498-52396517 | Msa0775440:intron | 35.0% |
| ! | TTTTAGGCACTACGTATACT+AGG | + | chr5_2:52396870-52396889 | None:intergenic | 35.0% |
| ! | CGATTTCTACCTTTTTCTCA+CGG | + | chr5_2:52396970-52396989 | None:intergenic | 35.0% |
| ! | GTGGTTGAGTCTAAAATAAC+CGG | - | chr5_2:52397121-52397140 | Msa0775440:intron | 35.0% |
| ! | AGGTTATCTTTTGTCTGATG+TGG | - | chr5_2:52397743-52397762 | Msa0775440:intron | 35.0% |
| !! | ATTTTTGCTTTGAGCCTACT+TGG | - | chr5_2:52397867-52397886 | Msa0775440:intron | 35.0% |
| ! | ACTGAAAATTTTCACCTGGA+CGG | - | chr5_2:52398065-52398084 | Msa0775440:intron | 35.0% |
| AGGCAAATTGCATATTTCAC+CGG | - | chr5_2:52398099-52398118 | Msa0775440:intron | 35.0% | |
| TACGATTACTCTTTCGTTCA+TGG | - | chr5_2:52398131-52398150 | Msa0775440:intron | 35.0% | |
| GCAGTAATATCTATGAAGGT+CGG | - | chr5_2:52398374-52398393 | Msa0775440:intron | 35.0% | |
| CCGGCTCTCTTATTATTAAT+AGG | - | chr5_2:52398433-52398452 | Msa0775440:intron | 35.0% | |
| !!! | TATTTTTGGCCCCAAAATTG+GGG | - | chr5_2:52398701-52398720 | Msa0775440:intron | 35.0% |
| TCTATGTTCATGTATGTCCA+GGG | + | chr5_2:52398769-52398788 | None:intergenic | 35.0% | |
| !! | ACACAACATGTATTTGGTGT+CGG | + | chr5_2:52398825-52398844 | None:intergenic | 35.0% |
| ACACTGACACAACATGTATT+TGG | + | chr5_2:52398831-52398850 | None:intergenic | 35.0% | |
| TACCAGAACACACTAATTTG+AGG | - | chr5_2:52398872-52398891 | Msa0775440:CDS | 35.0% | |
| TATGTGAATGTTTCAGTTGG+AGG | - | chr5_2:52399138-52399157 | Msa0775440:intron | 35.0% | |
| ATGTGAATGTTTCAGTTGGA+GGG | - | chr5_2:52399139-52399158 | Msa0775440:intron | 35.0% | |
| CATTGTGCATACTAAAGGAA+TGG | - | chr5_2:52399384-52399403 | Msa0775440:intron | 35.0% | |
| TGAACATTAATGGCAGCAAA+TGG | + | chr5_2:52399824-52399843 | None:intergenic | 35.0% | |
| TTAGTATCTCTCTCAGTGTA+CGG | + | chr5_2:52400204-52400223 | None:intergenic | 35.0% | |
| AATCAAACCTCACACATAAG+TGG | + | chr5_2:52400408-52400427 | None:intergenic | 35.0% | |
| !! | ATGTGTGAGGTTTGATTTTC+AGG | - | chr5_2:52400411-52400430 | Msa0775440:intron | 35.0% |
| GATGATGAAAAAGCAGTGAT+AGG | - | chr5_2:52400445-52400464 | Msa0775440:intron | 35.0% | |
| !!! | GATTTTGGAGTGCATTTAGT+TGG | - | chr5_2:52400467-52400486 | Msa0775440:intron | 35.0% |
| CTTACAAGAACAAACTGGTA+CGG | - | chr5_2:52400777-52400796 | Msa0775440:intron | 35.0% | |
| !! | AGCTTTAAGCTCAATACATC+TGG | - | chr5_2:52400857-52400876 | Msa0775440:CDS | 35.0% |
| !! | CATATCTTTAGGTGTTGCTA+TGG | - | chr5_2:52400926-52400945 | Msa0775440:intron | 35.0% |
| ! | TGGCTTTACACCACTAAATT+TGG | - | chr5_2:52401247-52401266 | Msa0775440:intron | 35.0% |
| TGTGATTGTTGCATGGATAA+TGG | - | chr5_2:52401303-52401322 | Msa0775440:intron | 35.0% | |
| GTGATTGTTGCATGGATAAT+GGG | - | chr5_2:52401304-52401323 | Msa0775440:intron | 35.0% | |
| !! | ATGGATAATGGGTATACGAA+TGG | - | chr5_2:52401315-52401334 | Msa0775440:intron | 35.0% |
| ! | AATGGGTATACGAATGGATT+TGG | - | chr5_2:52401321-52401340 | Msa0775440:intron | 35.0% |
| GACTTCAATCTTCTTGAAAC+TGG | - | chr5_2:52401343-52401362 | Msa0775440:intron | 35.0% | |
| GGAACTTCACACTATTTGAA+AGG | - | chr5_2:52401511-52401530 | Msa0775440:intron | 35.0% | |
| !!! | GTAATCTCACTTTTTTGTGG+TGG | + | chr5_2:52401911-52401930 | None:intergenic | 35.0% |
| TCCAAACACATACCAAACTA+TGG | - | chr5_2:52401970-52401989 | Msa0775440:intron | 35.0% | |
| ACCATAGTTTGGTATGTGTT+TGG | + | chr5_2:52401974-52401993 | None:intergenic | 35.0% | |
| ! | GTCTCATTTTCACCATAGTT+TGG | + | chr5_2:52401985-52402004 | None:intergenic | 35.0% |
| AGTTATAGCAATCCTCTATG+TGG | + | chr5_2:52402016-52402035 | None:intergenic | 35.0% | |
| ! | TTTTTCTTTGGACAACCAAC+AGG | + | chr5_2:52402069-52402088 | None:intergenic | 35.0% |
| ! | TAGGAAGATATGTTTGGAGT+AGG | + | chr5_2:52402120-52402139 | None:intergenic | 35.0% |
| TCACAAAAATTGACGGTTCA+TGG | + | chr5_2:52402537-52402556 | None:intergenic | 35.0% | |
| TATAGTGCACCATCAAACAA+AGG | - | chr5_2:52402570-52402589 | Msa0775440:intron | 35.0% | |
| ! | GAATTCACTCCTTTGTTTGA+TGG | + | chr5_2:52402582-52402601 | None:intergenic | 35.0% |
| !! | AGATTGTTTTTCTCACAACG+GGG | + | chr5_2:52402710-52402729 | None:intergenic | 35.0% |
| !! | CAGATTGTTTTTCTCACAAC+GGG | + | chr5_2:52402711-52402730 | None:intergenic | 35.0% |
| TAGAAATCCATCTTCGAATC+TGG | + | chr5_2:52402762-52402781 | None:intergenic | 35.0% | |
| !!! | CTTGGCAATAAGGCTTTTTT+TGG | - | chr5_2:52402867-52402886 | Msa0775440:CDS | 35.0% |
| !!! | GCTTTTTTTGGTCAAGTTCT+TGG | - | chr5_2:52402879-52402898 | Msa0775440:CDS | 35.0% |
| TGGTCAAGTTCTTGGAAATT+TGG | - | chr5_2:52402887-52402906 | Msa0775440:CDS | 35.0% | |
| !!! | GTTTTGATTCTCCACATTCA+TGG | - | chr5_2:52402935-52402954 | Msa0775440:CDS | 35.0% |
| AAATCAGCAGCAACAGCTAA+AGG | + | chr5_2:52395999-52396018 | None:intergenic | 40.0% | |
| !!! | GCTGCTGATTTTTATAGCCT+TGG | - | chr5_2:52396008-52396027 | Msa0775440:three_prime_UTR | 40.0% |
| GAAAGTCACTTGTGACATTG+TGG | + | chr5_2:52396760-52396779 | None:intergenic | 40.0% | |
| ! | CTTTGATAGCCGTGAGAAAA+AGG | - | chr5_2:52396958-52396977 | Msa0775440:intron | 40.0% |
| ! | GTTGAGTCTAAAATAACCGG+TGG | - | chr5_2:52397124-52397143 | Msa0775440:intron | 40.0% |
| !! | AGCCAGCAGTATTTTTATGG+AGG | - | chr5_2:52397150-52397169 | Msa0775440:intron | 40.0% |
| !! | GCCAGCAGTATTTTTATGGA+GGG | - | chr5_2:52397151-52397170 | Msa0775440:intron | 40.0% |
| !! | CCAGCAGTATTTTTATGGAG+GGG | - | chr5_2:52397152-52397171 | Msa0775440:intron | 40.0% |
| AAGTTGTAGCTCAAGTGGTT+TGG | - | chr5_2:52397224-52397243 | Msa0775440:CDS | 40.0% | |
| GAGTTTCGAACCACAGTTAA+GGG | + | chr5_2:52397266-52397285 | None:intergenic | 40.0% | |
| AGAGTTTCGAACCACAGTTA+AGG | + | chr5_2:52397267-52397286 | None:intergenic | 40.0% | |
| GAGTTTCGAACCACAGTTAA+GGG | + | chr5_2:52397266-52397285 | None:intergenic | 40.0% | |
| AGAGTTTCGAACCACAGTTA+AGG | + | chr5_2:52397267-52397286 | None:intergenic | 40.0% | |
| !! | TGTATGATTGTGTTCTGAGG+CGG | + | chr5_2:52397676-52397695 | None:intergenic | 40.0% |
| AGGCTCAAAGCAAAAATCCA+AGG | + | chr5_2:52397864-52397883 | None:intergenic | 40.0% | |
| ACATGCAAACTTACTCAGTG+AGG | + | chr5_2:52397923-52397942 | None:intergenic | 40.0% | |
| GAAAGAGTAATCGTACCTGT+TGG | + | chr5_2:52398126-52398145 | None:intergenic | 40.0% | |
| !! | TCATGGACTAGACTAGTGTA+CGG | - | chr5_2:52398148-52398167 | Msa0775440:intron | 40.0% |
| !! | AGTGTTGTGCTTTTTGTCTG+CGG | + | chr5_2:52398582-52398601 | None:intergenic | 40.0% |
| GTCTATGTTCATGTATGTCC+AGG | + | chr5_2:52398770-52398789 | None:intergenic | 40.0% | |
| ACCAAATACGACACAGACAT+GGG | - | chr5_2:52398796-52398815 | Msa0775440:CDS | 40.0% | |
| CTCCTCAAATTAGTGTGTTC+TGG | + | chr5_2:52398877-52398896 | None:intergenic | 40.0% | |
| !! | AGGAGTATTCGTGTTTCGTA+GGG | - | chr5_2:52398892-52398911 | Msa0775440:CDS | 40.0% |
| CAAGAGAAGGTTTGAGAGAA+TGG | + | chr5_2:52399265-52399284 | None:intergenic | 40.0% | |
| CATTCTCTCAAACCTTCTCT+TGG | - | chr5_2:52399263-52399282 | Msa0775440:intron | 40.0% | |
| ! | TCAAACCTTCTCTTGGTTCT+AGG | - | chr5_2:52399270-52399289 | Msa0775440:intron | 40.0% |
| TGGCTTAGCAAACCTTAAGA+GGG | - | chr5_2:52399311-52399330 | Msa0775440:intron | 40.0% | |
| CATATCTTTGCTCCCTCTTA+AGG | + | chr5_2:52399326-52399345 | None:intergenic | 40.0% | |
| ATGTTCAAATACGCTTTGGC+TGG | - | chr5_2:52399837-52399856 | Msa0775440:intron | 40.0% | |
| TGTTCAAATACGCTTTGGCT+GGG | - | chr5_2:52399838-52399857 | Msa0775440:intron | 40.0% | |
| !! | TGTGAGGTTTGATTTTCAGG+TGG | - | chr5_2:52400414-52400433 | Msa0775440:intron | 40.0% |
| TTGGAGTGCATTTAGTTGGT+TGG | - | chr5_2:52400471-52400490 | Msa0775440:intron | 40.0% | |
| AGTGCATTTAGTTGGTTGGT+GGG | - | chr5_2:52400475-52400494 | Msa0775440:intron | 40.0% | |
| TGTGCTTTCTGAGTATGTTG+TGG | - | chr5_2:52400516-52400535 | Msa0775440:intron | 40.0% | |
| GTGCTTTCTGAGTATGTTGT+GGG | - | chr5_2:52400517-52400536 | Msa0775440:intron | 40.0% | |
| CATGCAACAATCACACTTGA+TGG | + | chr5_2:52401298-52401317 | None:intergenic | 40.0% | |
| CATCAAGTGTGATTGTTGCA+TGG | - | chr5_2:52401296-52401315 | Msa0775440:intron | 40.0% | |
| CTTCTTGAAACTGGATGTCT+TGG | - | chr5_2:52401352-52401371 | Msa0775440:intron | 40.0% | |
| TGTTACAGCCTTCACTTTAC+AGG | - | chr5_2:52401387-52401406 | Msa0775440:intron | 40.0% | |
| ! | AGACTCATTTTGCCACATAG+AGG | - | chr5_2:52402001-52402020 | Msa0775440:intron | 40.0% |
| ACTCTCTGTCTCAAAAGAAG+TGG | - | chr5_2:52402297-52402316 | Msa0775440:intron | 40.0% | |
| AGAAAAACAATCTGACCCTG+CGG | - | chr5_2:52402717-52402736 | Msa0775440:intron | 40.0% | |
| ACGAATTTCAATCATCCGCA+GGG | + | chr5_2:52402735-52402754 | None:intergenic | 40.0% | |
| ATTACTGGGGTGGTGAAGTT+AGG | + | chr5_2:52396156-52396175 | None:intergenic | 45.0% | |
| !!! | TGGTTTTGTGATTACTGGGG+TGG | + | chr5_2:52396166-52396185 | None:intergenic | 45.0% |
| CAAGTGCTACCCTCGTATAA+GGG | + | chr5_2:52396707-52396726 | None:intergenic | 45.0% | |
| CTTATACGAGGGTAGCACTT+GGG | - | chr5_2:52396706-52396725 | Msa0775440:intron | 45.0% | |
| GTCACTTGTGACATTGTGGT+TGG | + | chr5_2:52396756-52396775 | None:intergenic | 45.0% | |
| GCACTACGTATACTAGGCAA+TGG | + | chr5_2:52396864-52396883 | None:intergenic | 45.0% | |
| ! | GAGTCTAAAATAACCGGTGG+CGG | - | chr5_2:52397127-52397146 | Msa0775440:intron | 45.0% |
| !! | CGGAGCCAGCAGTATTTTTA+TGG | - | chr5_2:52397147-52397166 | Msa0775440:intron | 45.0% |
| CCCCTCCATAAAAATACTGC+TGG | + | chr5_2:52397155-52397174 | None:intergenic | 45.0% | |
| CTCTCATGTTCCCTTAACTG+TGG | - | chr5_2:52397283-52397302 | Msa0775440:intron | 45.0% | |
| ! | GTTTTTCTCCATCGTAGCCT+TGG | - | chr5_2:52397844-52397863 | Msa0775440:intron | 45.0% |
| GCAAAAATCCAAGGCTACGA+TGG | + | chr5_2:52397855-52397874 | None:intergenic | 45.0% | |
| AGTAATCGTACCTGTTGGTC+CGG | + | chr5_2:52398121-52398140 | None:intergenic | 45.0% | |
| GCGGTTCAACTCCCATATAA+TGG | + | chr5_2:52398563-52398582 | None:intergenic | 45.0% | |
| ACACTACCATTGTTAACCGC+TGG | - | chr5_2:52398597-52398616 | Msa0775440:intron | 45.0% | |
| CACTACCATTGTTAACCGCT+GGG | - | chr5_2:52398598-52398617 | Msa0775440:intron | 45.0% | |
| AATCAAATGTTGTGGCCCAG+CGG | + | chr5_2:52398616-52398635 | None:intergenic | 45.0% | |
| CACCAAATACGACACAGACA+TGG | - | chr5_2:52398795-52398814 | Msa0775440:CDS | 45.0% | |
| TCCCATGTCTGTGTCGTATT+TGG | + | chr5_2:52398800-52398819 | None:intergenic | 45.0% | |
| !! | GAGGAGTATTCGTGTTTCGT+AGG | - | chr5_2:52398891-52398910 | Msa0775440:CDS | 45.0% |
| GGGCTTCTAAATGCAACTTG+TGG | - | chr5_2:52399159-52399178 | Msa0775440:intron | 45.0% | |
| GTTGTCAAGTTCTCCTTGCT+TGG | - | chr5_2:52399237-52399256 | Msa0775440:intron | 45.0% | |
| TGAGAGAATGGAACCAAGCA+AGG | + | chr5_2:52399253-52399272 | None:intergenic | 45.0% | |
| GTGGCTTAGCAAACCTTAAG+AGG | - | chr5_2:52399310-52399329 | Msa0775440:intron | 45.0% | |
| GTTCAAATACGCTTTGGCTG+GGG | - | chr5_2:52399839-52399858 | Msa0775440:intron | 45.0% | |
| TTCAAATACGCTTTGGCTGG+GGG | - | chr5_2:52399840-52399859 | Msa0775440:intron | 45.0% | |
| GAGTGCATTTAGTTGGTTGG+TGG | - | chr5_2:52400474-52400493 | Msa0775440:intron | 45.0% | |
| !! | TTGGTTGGTGGGTATGACAT+TGG | - | chr5_2:52400486-52400505 | Msa0775440:intron | 45.0% |
| GTATGTTGTGGGAACCATTG+AGG | - | chr5_2:52400528-52400547 | Msa0775440:intron | 45.0% | |
| TCTGCAGCATTCCCAACAAT+TGG | + | chr5_2:52400734-52400753 | None:intergenic | 45.0% | |
| TGTGCAGACCTGTAAAGTGA+AGG | + | chr5_2:52401398-52401417 | None:intergenic | 45.0% | |
| ACGACGATAGCTTCAAAGCA+TGG | + | chr5_2:52402671-52402690 | None:intergenic | 45.0% | |
| GACGAATTTCAATCATCCGC+AGG | + | chr5_2:52402736-52402755 | None:intergenic | 45.0% | |
| TCTCACAGCTTCAGTTTCGA+AGG | + | chr5_2:52402804-52402823 | None:intergenic | 45.0% | |
| !! | TTCAATAATTAATTATTTAA+AGG | + | chr5_2:52397066-52397085 | None:intergenic | 5.0% |
| !! | ATATATTAGTAAAAAAAATA+TGG | - | chr5_2:52398292-52398311 | Msa0775440:CDS | 5.0% |
| !! | TATATTAGTAAAAAAAATAT+GGG | - | chr5_2:52398293-52398312 | Msa0775440:CDS | 5.0% |
| !!! | TTTAAAAATTGTATATTTTA+GGG | + | chr5_2:52398460-52398479 | None:intergenic | 5.0% |
| !!! | TTTTAAAAATTGTATATTTT+AGG | + | chr5_2:52398461-52398480 | None:intergenic | 5.0% |
| GCAACAGCTAAAGGAACAGC+CGG | + | chr5_2:52395990-52396009 | None:intergenic | 50.0% | |
| CCAAGTGCTACCCTCGTATA+AGG | + | chr5_2:52396708-52396727 | None:intergenic | 50.0% | |
| CCTTATACGAGGGTAGCACT+TGG | - | chr5_2:52396705-52396724 | Msa0775440:intron | 50.0% | |
| AAGCTGACACGTTCAGCTAG+GGG | + | chr5_2:52397900-52397919 | None:intergenic | 50.0% | |
| GAAGCTGACACGTTCAGCTA+GGG | + | chr5_2:52397901-52397920 | None:intergenic | 50.0% | |
| GCATATTTCACCGGACCAAC+AGG | - | chr5_2:52398108-52398127 | Msa0775440:intron | 50.0% | |
| TGAAGGTCGGAGACATACAC+AGG | - | chr5_2:52398387-52398406 | Msa0775440:intron | 50.0% | |
| GAAGGTCGGAGACATACACA+GGG | - | chr5_2:52398388-52398407 | Msa0775440:intron | 50.0% | |
| ! | GGCCTCCAATTTTACAGGGA+CGG | + | chr5_2:52398414-52398433 | None:intergenic | 50.0% |
| TCCCTGTAAAATTGGAGGCC+CGG | - | chr5_2:52398414-52398433 | Msa0775440:intron | 50.0% | |
| ! | TTTTGGCCCCAAAATTGGGG+AGG | - | chr5_2:52398704-52398723 | Msa0775440:intron | 50.0% |
| GCAAACAGCTCTACAGAGCT+GGG | + | chr5_2:52398730-52398749 | None:intergenic | 50.0% | |
| TGCAAACAGCTCTACAGAGC+TGG | + | chr5_2:52398731-52398750 | None:intergenic | 50.0% | |
| TGTTCATGTATGTCCAGGGC+CGG | + | chr5_2:52398765-52398784 | None:intergenic | 50.0% | |
| ! | CAGTTTTACCTTGTACCCCC+AGG | - | chr5_2:52398932-52398951 | Msa0775440:CDS | 50.0% |
| ! | TTTTACCTTGTACCCCCAGG+CGG | - | chr5_2:52398935-52398954 | Msa0775440:CDS | 50.0% |
| AGCTGCCTAGAACCAAGAGA+AGG | + | chr5_2:52399278-52399297 | None:intergenic | 50.0% | |
| !! | GGTTTGCTAAGCCACCACAA+AGG | + | chr5_2:52399305-52399324 | None:intergenic | 50.0% |
| CAATCTCTCCTTGCTCCTGT+TGG | - | chr5_2:52402051-52402070 | Msa0775440:intron | 50.0% | |
| TTGGACAACCAACAGGAGCA+AGG | + | chr5_2:52402062-52402081 | None:intergenic | 50.0% | |
| CGTCACTCCAGATTCGAAGA+TGG | - | chr5_2:52402752-52402771 | Msa0775440:CDS | 50.0% | |
| GTAGCACTTGGGTGACACTG+TGG | - | chr5_2:52396717-52396736 | Msa0775440:intron | 55.0% | |
| CACTTGGGTGACACTGTGGT+TGG | - | chr5_2:52396721-52396740 | Msa0775440:intron | 55.0% | |
| !! | GACACTGTGGTTGGTGACAC+TGG | - | chr5_2:52396730-52396749 | Msa0775440:intron | 55.0% |
| !! | TGTGTTCTGAGGCGGAGCTA+GGG | + | chr5_2:52397668-52397687 | None:intergenic | 55.0% |
| !! | TTGTGTTCTGAGGCGGAGCT+AGG | + | chr5_2:52397669-52397688 | None:intergenic | 55.0% |
| CTAGGGGAGCAAGTCCAAGT+AGG | + | chr5_2:52397884-52397903 | None:intergenic | 55.0% | |
| GGAAGCTGACACGTTCAGCT+AGG | + | chr5_2:52397902-52397921 | None:intergenic | 55.0% | |
| ! | CCTTCAAGTTCATGCCGTCC+AGG | + | chr5_2:52398082-52398101 | None:intergenic | 55.0% |
| CCTGGACGGCATGAACTTGA+AGG | - | chr5_2:52398079-52398098 | Msa0775440:intron | 55.0% | |
| CAGGGCCGTCCCTGTAAAAT+TGG | - | chr5_2:52398406-52398425 | Msa0775440:intron | 55.0% | |
| GGCCGTCCCTGTAAAATTGG+AGG | - | chr5_2:52398409-52398428 | Msa0775440:intron | 55.0% | |
| ! | GCCGGGCCTCCAATTTTACA+GGG | + | chr5_2:52398418-52398437 | None:intergenic | 55.0% |
| ! | AGCCGGGCCTCCAATTTTAC+AGG | + | chr5_2:52398419-52398438 | None:intergenic | 55.0% |
| TGTGGCCCAGCGGTTAACAA+TGG | + | chr5_2:52398606-52398625 | None:intergenic | 55.0% | |
| ! | AGCTGGGCCTCCCCAATTTT+GGG | + | chr5_2:52398714-52398733 | None:intergenic | 55.0% |
| CTAGGCAGCTCACTCCTTTG+TGG | - | chr5_2:52399288-52399307 | Msa0775440:intron | 55.0% | |
| GGGAATGCTGCAGAACATGC+TGG | - | chr5_2:52400740-52400759 | Msa0775440:intron | 55.0% | |
| !! | AATACTGCTGGCTCCGCCAC+CGG | + | chr5_2:52397143-52397162 | None:intergenic | 60.0% |
| ! | AGGGGGACATGGGAGGTACA+TGG | + | chr5_2:52397649-52397668 | None:intergenic | 60.0% |
| !! | TGTTCTGAGGCGGAGCTAGG+GGG | + | chr5_2:52397666-52397685 | None:intergenic | 60.0% |
| !! | GTGTTCTGAGGCGGAGCTAG+GGG | + | chr5_2:52397667-52397686 | None:intergenic | 60.0% |
| ! | GCTGGGCCTCCCCAATTTTG+GGG | + | chr5_2:52398713-52398732 | None:intergenic | 60.0% |
| ! | GAGCTGGGCCTCCCCAATTT+TGG | + | chr5_2:52398715-52398734 | None:intergenic | 60.0% |
| AGAGCTGTTTGCACCTCCCC+AGG | - | chr5_2:52398738-52398757 | Msa0775440:intron | 60.0% | |
| GAGCTGTTTGCACCTCCCCA+GGG | - | chr5_2:52398739-52398758 | Msa0775440:intron | 60.0% | |
| GGCAGCTCACTCCTTTGTGG+TGG | - | chr5_2:52399291-52399310 | Msa0775440:intron | 60.0% | |
| AGGCGGAGCTAGGGGGACAT+GGG | + | chr5_2:52397659-52397678 | None:intergenic | 65.0% | |
| TGTTTGCACCTCCCCAGGGC+CGG | - | chr5_2:52398743-52398762 | Msa0775440:intron | 65.0% | |
| ! | GATCTCCGCCTGGGGGTACA+AGG | + | chr5_2:52398943-52398962 | None:intergenic | 65.0% |
| GTGTAGGGATCTCCGCCTGG+GGG | + | chr5_2:52398950-52398969 | None:intergenic | 65.0% | |
| GGTGTAGGGATCTCCGCCTG+GGG | + | chr5_2:52398951-52398970 | None:intergenic | 65.0% | |
| GGGTGTAGGGATCTCCGCCT+GGG | + | chr5_2:52398952-52398971 | None:intergenic | 65.0% | |
| TGGGTGTAGGGATCTCCGCC+TGG | + | chr5_2:52398953-52398972 | None:intergenic | 65.0% | |
| CGGAGCTAGGGGGACATGGG+AGG | + | chr5_2:52397656-52397675 | None:intergenic | 70.0% | |
| GAGGCGGAGCTAGGGGGACA+TGG | + | chr5_2:52397660-52397679 | None:intergenic | 70.0% | |
| TATGTCCAGGGCCGGCCCTG+GGG | + | chr5_2:52398757-52398776 | None:intergenic | 70.0% | |
| GTATGTCCAGGGCCGGCCCT+GGG | + | chr5_2:52398758-52398777 | None:intergenic | 70.0% | |
| TGTATGTCCAGGGCCGGCCC+TGG | + | chr5_2:52398759-52398778 | None:intergenic | 70.0% | |
| ! | CACCTCCCCAGGGCCGGCCC+TGG | - | chr5_2:52398749-52398768 | Msa0775440:intron | 85.0% |
| ! | GTCCAGGGCCGGCCCTGGGG+AGG | + | chr5_2:52398754-52398773 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 52395678 | 52403079 | 52395678 | ID=Msa0775440;Name=Msa0775440 |
| chr5_2 | mRNA | 52395678 | 52403079 | 52395678 | ID=Msa0775440-mRNA-1;Parent=Msa0775440;Name=Msa0775440-mRNA-1;_AED=0.08;_eAED=0.08;_QI=87|1|1|1|0.90|0.83|12|379|434 |
| chr5_2 | exon | 52395678 | 52395750 | 52395678 | ID=Msa0775440-mRNA-1:exon:15659;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52395773 | 52396104 | 52395773 | ID=Msa0775440-mRNA-1:exon:15658;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52397156 | 52397249 | 52397156 | ID=Msa0775440-mRNA-1:exon:15657;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52397349 | 52397465 | 52397349 | ID=Msa0775440-mRNA-1:exon:15656;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52397780 | 52397833 | 52397780 | ID=Msa0775440-mRNA-1:exon:15655;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52397964 | 52398080 | 52397964 | ID=Msa0775440-mRNA-1:exon:15654;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52398208 | 52398324 | 52398208 | ID=Msa0775440-mRNA-1:exon:15653;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52398768 | 52398983 | 52398768 | ID=Msa0775440-mRNA-1:exon:15652;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52399407 | 52399603 | 52399407 | ID=Msa0775440-mRNA-1:exon:15651;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52400628 | 52400656 | 52400628 | ID=Msa0775440-mRNA-1:exon:15650;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52400829 | 52400896 | 52400829 | ID=Msa0775440-mRNA-1:exon:15649;Parent=Msa0775440-mRNA-1 |
| chr5_2 | exon | 52402723 | 52403079 | 52402723 | ID=Msa0775440-mRNA-1:exon:15648;Parent=Msa0775440-mRNA-1 |
| chr5_2 | five_prime_UTR | 52402993 | 52403079 | 52402993 | ID=Msa0775440-mRNA-1:five_prime_utr;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52402723 | 52402992 | 52402723 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52400829 | 52400896 | 52400829 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52400628 | 52400656 | 52400628 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52399407 | 52399603 | 52399407 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52398768 | 52398983 | 52398768 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52398208 | 52398324 | 52398208 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52397964 | 52398080 | 52397964 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52397780 | 52397833 | 52397780 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52397349 | 52397465 | 52397349 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52397156 | 52397249 | 52397156 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | CDS | 52396079 | 52396104 | 52396079 | ID=Msa0775440-mRNA-1:cds;Parent=Msa0775440-mRNA-1 |
| chr5_2 | three_prime_UTR | 52395773 | 52396078 | 52395773 | ID=Msa0775440-mRNA-1:three_prime_utr;Parent=Msa0775440-mRNA-1 |
| chr5_2 | three_prime_UTR | 52395678 | 52395750 | 52395678 | ID=Msa0775440-mRNA-1:three_prime_utr;Parent=Msa0775440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
