Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315250 | XP_013465033.1 | 94.223 | 502 | 28 | 1 | 1 | 502 | 1 | 501 | 0.0 | 943 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315250 | sp|Q8S8I1|QWRF3_ARATH | 38.108 | 370 | 190 | 9 | 150 | 482 | 101 | 468 | 2.01e-72 | 240 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315250 | A0A072VC90 | 94.223 | 502 | 28 | 1 | 1 | 502 | 1 | 501 | 0.0 | 943 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012440 | Msa0315250 | 0.805564 | 1.256117e-49 | -8.615850e-47 |
| Msa0036430 | Msa0315250 | 0.807204 | 5.666283e-50 | -8.615850e-47 |
| Msa0118400 | Msa0315250 | 0.806476 | 8.074266e-50 | -8.615850e-47 |
| Msa0130570 | Msa0315250 | 0.805608 | 1.229402e-49 | -8.615850e-47 |
| Msa0141100 | Msa0315250 | 0.837413 | 5.276127e-57 | -8.615850e-47 |
| Msa0153420 | Msa0315250 | 0.816500 | 5.356085e-52 | -8.615850e-47 |
| Msa0191040 | Msa0315250 | 0.858988 | 5.641395e-63 | -8.615850e-47 |
| Msa0206800 | Msa0315250 | 0.804345 | 2.258814e-49 | -8.615850e-47 |
| Msa0219190 | Msa0315250 | 0.814314 | 1.641017e-51 | -8.615850e-47 |
| Msa0220300 | Msa0315250 | 0.880290 | 6.201438e-70 | -8.615850e-47 |
| Msa0233340 | Msa0315250 | 0.859249 | 4.713068e-63 | -8.615850e-47 |
| Msa0236110 | Msa0315250 | 0.804233 | 2.383033e-49 | -8.615850e-47 |
| Msa0251240 | Msa0315250 | 0.845614 | 3.638367e-59 | -8.615850e-47 |
| Msa0288190 | Msa0315250 | 0.806738 | 7.111169e-50 | -8.615850e-47 |
| Msa0288200 | Msa0315250 | 0.809950 | 1.468923e-50 | -8.615850e-47 |
| Msa0311690 | Msa0315250 | 0.859628 | 3.626721e-63 | -8.615850e-47 |
| Msa0314630 | Msa0315250 | 0.806286 | 8.853539e-50 | -8.615850e-47 |
| Msa0315250 | Msa0326540 | 0.812209 | 4.756576e-51 | -8.615850e-47 |
| Msa0315250 | Msa0374850 | 0.846374 | 2.261409e-59 | -8.615850e-47 |
| Msa0315250 | Msa0375090 | 0.837395 | 5.331861e-57 | -8.615850e-47 |
| Msa0315250 | Msa0413930 | 0.801005 | 1.104116e-48 | -8.615850e-47 |
| Msa0315250 | Msa0436460 | 0.807588 | 4.696778e-50 | -8.615850e-47 |
| Msa0315250 | Msa0436500 | 0.809468 | 1.864170e-50 | -8.615850e-47 |
| Msa0315250 | Msa0470340 | 0.832291 | 1.028012e-55 | -8.615850e-47 |
| Msa0315250 | Msa0470860 | 0.817616 | 3.007032e-52 | -8.615850e-47 |
| Msa0315250 | Msa0480950 | 0.814026 | 1.900160e-51 | -8.615850e-47 |
| Msa0315250 | Msa0520510 | 0.813536 | 2.436009e-51 | -8.615850e-47 |
| Msa0315250 | Msa0531430 | 0.849517 | 3.074017e-60 | -8.615850e-47 |
| Msa0315250 | Msa0534570 | 0.813654 | 2.294796e-51 | -8.615850e-47 |
| Msa0315250 | Msa0534590 | 0.834462 | 2.956459e-56 | -8.615850e-47 |
| Msa0315250 | Msa0565600 | 0.836569 | 8.667977e-57 | -8.615850e-47 |
| Msa0315250 | Msa0590800 | 0.834599 | 2.730506e-56 | -8.615850e-47 |
| Msa0315250 | Msa0611380 | 0.834669 | 2.622602e-56 | -8.615850e-47 |
| Msa0315250 | Msa0618180 | 0.809786 | 1.592690e-50 | -8.615850e-47 |
| Msa0315250 | Msa0618220 | 0.814166 | 1.769052e-51 | -8.615850e-47 |
| Msa0315250 | Msa0619990 | 0.800836 | 1.195750e-48 | -8.615850e-47 |
| Msa0315250 | Msa0628640 | 0.807652 | 4.552853e-50 | -8.615850e-47 |
| Msa0315250 | Msa0631120 | 0.854390 | 1.270934e-61 | -8.615850e-47 |
| Msa0315250 | Msa0666030 | 0.839435 | 1.587099e-57 | -8.615850e-47 |
| Msa0315250 | Msa0669340 | 0.851346 | 9.424940e-61 | -8.615850e-47 |
| Msa0315250 | Msa0701970 | 0.830762 | 2.446560e-55 | -8.615850e-47 |
| Msa0315250 | Msa0716450 | 0.839241 | 1.782535e-57 | -8.615850e-47 |
| Msa0315250 | Msa0717260 | 0.840374 | 9.038146e-58 | -8.615850e-47 |
| Msa0315250 | Msa0717670 | 0.804511 | 2.086234e-49 | -8.615850e-47 |
| Msa0315250 | Msa0734230 | 0.803463 | 3.445000e-49 | -8.615850e-47 |
| Msa0315250 | Msa0758320 | 0.842400 | 2.646213e-58 | -8.615850e-47 |
| Msa0315250 | Msa0775440 | 0.839089 | 1.951566e-57 | -8.615850e-47 |
| Msa0315250 | Msa0799030 | 0.822393 | 2.426857e-53 | -8.615850e-47 |
| Msa0315250 | Msa0799700 | 0.824904 | 6.268314e-54 | -8.615850e-47 |
| Msa0315250 | Msa0810020 | 0.803909 | 2.783653e-49 | -8.615850e-47 |
| Msa0315250 | Msa0812820 | 0.808284 | 3.341163e-50 | -8.615850e-47 |
| Msa0315250 | Msa0833340 | 0.801786 | 7.638219e-49 | -8.615850e-47 |
| Msa0315250 | Msa0837440 | 0.830943 | 2.208601e-55 | -8.615850e-47 |
| Msa0315250 | Msa0837980 | 0.850139 | 2.060054e-60 | -8.615850e-47 |
| Msa0315250 | Msa0853320 | 0.839306 | 1.714233e-57 | -8.615850e-47 |
| Msa0315250 | Msa0870620 | 0.810070 | 1.384052e-50 | -8.615850e-47 |
| Msa0315250 | Msa0872310 | 0.807096 | 5.973875e-50 | -8.615850e-47 |
| Msa0315250 | Msa0880710 | 0.815856 | 7.460629e-52 | -8.615850e-47 |
| Msa0315250 | Msa0885060 | 0.827873 | 1.230123e-54 | -8.615850e-47 |
| Msa0315250 | Msa0979510 | 0.800953 | 1.131757e-48 | -8.615850e-47 |
| Msa0315250 | Msa1002620 | 0.828347 | 9.454544e-55 | -8.615850e-47 |
| Msa0315250 | Msa1033560 | 0.843225 | 1.596989e-58 | -8.615850e-47 |
| Msa0315250 | Msa1073340 | 0.814835 | 1.258586e-51 | -8.615850e-47 |
| Msa0315250 | Msa1073350 | 0.814330 | 1.627555e-51 | -8.615850e-47 |
| Msa0315250 | Msa1113850 | 0.847178 | 1.363293e-59 | -8.615850e-47 |
| Msa0315250 | Msa1160400 | 0.831526 | 1.588366e-55 | -8.615850e-47 |
| Msa0315250 | Msa1197580 | 0.809327 | 1.999144e-50 | -8.615850e-47 |
| Msa0315250 | Msa1203000 | 0.838328 | 3.070335e-57 | -8.615850e-47 |
| Msa0315250 | Msa1211550 | 0.810677 | 1.023416e-50 | -8.615850e-47 |
| Msa0315250 | Msa1218480 | 0.805149 | 1.534502e-49 | -8.615850e-47 |
| Msa0315250 | Msa1219260 | 0.828836 | 7.205639e-55 | -8.615850e-47 |
| Msa0315250 | Msa1227950 | 0.811569 | 6.557722e-51 | -8.615850e-47 |
| Msa0315250 | Msa1227970 | 0.818032 | 2.422619e-52 | -8.615850e-47 |
| Msa0315250 | Msa1254700 | 0.807914 | 4.004987e-50 | -8.615850e-47 |
| Msa0315250 | Msa1255280 | 0.841165 | 5.606492e-58 | -8.615850e-47 |
| Msa0315250 | Msa1258050 | 0.818018 | 2.440339e-52 | -8.615850e-47 |
| Msa0315250 | Msa1266960 | 0.828753 | 7.543364e-55 | -8.615850e-47 |
| Msa0315250 | Msa1274990 | 0.800593 | 1.340313e-48 | -8.615850e-47 |
| Msa0315250 | Msa1329920 | 0.812550 | 4.006646e-51 | -8.615850e-47 |
| Msa0315250 | Msa1339940 | 0.800263 | 1.564638e-48 | -8.615850e-47 |
| Msa0315250 | Msa1395870 | 0.810400 | 1.174718e-50 | -8.615850e-47 |
| Msa0315250 | Msa1399560 | 0.827187 | 1.796393e-54 | -8.615850e-47 |
| Msa0315250 | Msa1420060 | 0.820118 | 8.121660e-53 | -8.615850e-47 |
| Msa0315250 | Msa1429420 | 0.802169 | 6.371873e-49 | -8.615850e-47 |
| Msa0315250 | Msa1440340 | 0.811515 | 6.736693e-51 | -8.615850e-47 |
| Msa0315250 | Msa1443840 | 0.829323 | 5.490531e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315250 | MtrunA17_Chr2g0323821 | 94.223 | 502 | 28 | 1 | 1 | 502 | 1 | 501 | 0.0 | 943 |
| Msa0315250 | MtrunA17_Chr3g0079101 | 28.794 | 257 | 160 | 2 | 242 | 483 | 119 | 367 | 2.08e-28 | 116 |
| Msa0315250 | MtrunA17_Chr1g0207481 | 29.218 | 243 | 168 | 3 | 245 | 484 | 369 | 610 | 2.67e-28 | 118 |
| Msa0315250 | MtrunA17_Chr4g0073681 | 32.889 | 225 | 134 | 3 | 265 | 485 | 399 | 610 | 2.23e-26 | 112 |
| Msa0315250 | MtrunA17_Chr1g0152681 | 29.876 | 241 | 166 | 2 | 255 | 492 | 381 | 621 | 4.74e-26 | 112 |
| Msa0315250 | MtrunA17_Chr2g0291221 | 27.778 | 198 | 143 | 0 | 287 | 484 | 283 | 480 | 6.53e-20 | 92.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0315250 | AT2G20815.1 | 38.108 | 370 | 190 | 9 | 150 | 482 | 101 | 468 | 2.04e-73 | 240 |
| Msa0315250 | AT2G20815.2 | 38.005 | 371 | 190 | 10 | 150 | 482 | 72 | 440 | 7.30e-72 | 236 |
| Msa0315250 | AT2G20815.3 | 38.005 | 371 | 190 | 10 | 150 | 482 | 101 | 469 | 1.07e-71 | 236 |
| Msa0315250 | AT2G20815.4 | 33.240 | 358 | 176 | 9 | 150 | 482 | 72 | 391 | 3.90e-54 | 187 |
| Msa0315250 | AT2G24070.1 | 33.790 | 219 | 135 | 1 | 265 | 483 | 376 | 584 | 7.28e-30 | 124 |
| Msa0315250 | AT2G24070.3 | 33.790 | 219 | 135 | 1 | 265 | 483 | 376 | 584 | 7.28e-30 | 124 |
| Msa0315250 | AT2G24070.2 | 33.790 | 219 | 135 | 1 | 265 | 483 | 376 | 584 | 7.28e-30 | 124 |
| Msa0315250 | AT4G30710.3 | 31.963 | 219 | 139 | 1 | 265 | 483 | 412 | 620 | 1.59e-29 | 122 |
| Msa0315250 | AT4G30710.1 | 31.963 | 219 | 139 | 1 | 265 | 483 | 412 | 620 | 1.59e-29 | 122 |
| Msa0315250 | AT4G30710.2 | 31.963 | 219 | 139 | 1 | 265 | 483 | 412 | 620 | 6.06e-29 | 121 |
| Msa0315250 | AT4G30710.4 | 31.905 | 210 | 133 | 1 | 265 | 474 | 412 | 611 | 5.06e-27 | 115 |
| Msa0315250 | AT4G25190.1 | 28.467 | 274 | 166 | 5 | 239 | 489 | 128 | 394 | 2.34e-25 | 108 |
| Msa0315250 | AT1G49890.1 | 29.572 | 257 | 155 | 5 | 244 | 484 | 400 | 646 | 2.13e-24 | 107 |
| Msa0315250 | AT4G25190.2 | 28.364 | 275 | 166 | 6 | 239 | 489 | 128 | 395 | 7.26e-24 | 103 |
| Msa0315250 | AT3G19570.2 | 29.167 | 192 | 136 | 0 | 293 | 484 | 450 | 641 | 2.47e-23 | 104 |
| Msa0315250 | AT3G19570.1 | 30.814 | 172 | 119 | 0 | 293 | 464 | 450 | 621 | 2.96e-20 | 94.7 |
| Msa0315250 | AT5G43160.1 | 28.333 | 180 | 129 | 0 | 306 | 485 | 82 | 261 | 5.92e-20 | 90.1 |
| Msa0315250 | AT5G43160.2 | 28.333 | 180 | 129 | 0 | 306 | 485 | 82 | 261 | 5.92e-20 | 90.1 |
| Msa0315250 | AT3G60000.2 | 28.351 | 194 | 135 | 2 | 292 | 483 | 250 | 441 | 2.72e-18 | 87.8 |
| Msa0315250 | AT2G44190.1 | 28.856 | 201 | 139 | 2 | 287 | 485 | 264 | 462 | 2.33e-17 | 85.1 |
| Msa0315250 | AT3G60000.1 | 29.586 | 169 | 115 | 2 | 292 | 458 | 250 | 416 | 4.85e-16 | 80.9 |
| Msa0315250 | AT3G19570.4 | 32.414 | 145 | 98 | 0 | 293 | 437 | 450 | 594 | 1.11e-15 | 80.1 |
| Msa0315250 | AT3G19570.3 | 32.414 | 145 | 98 | 0 | 293 | 437 | 450 | 594 | 1.11e-15 | 80.1 |
Find 105 sgRNAs with CRISPR-Local
Find 149 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAAGTTAACATTGACTTAA+TGG | 0.211672 | 2_4:+11465400 | None:intergenic |
| GAAGAGGACTAATTCGATTA+TGG | 0.239383 | 2_4:-11466606 | Msa0315250:CDS |
| AACCATTCGACGGCGAATTA+AGG | 0.246819 | 2_4:+11466450 | None:intergenic |
| TCATCCAAGGAAAACCTTCC+TGG | 0.274888 | 2_4:+11466836 | None:intergenic |
| AATTCGCCGTCGAATGGTTT+TGG | 0.279413 | 2_4:-11466446 | Msa0315250:CDS |
| AAGAAGCTTAATTCTAATAA+TGG | 0.280763 | 2_4:-11466872 | Msa0315250:CDS |
| TGTGTCTCCTATCGTCTTCC+TGG | 0.281185 | 2_4:+11467158 | None:intergenic |
| CATGTTACAGGTTTAATCTT+AGG | 0.307341 | 2_4:+11464757 | None:intergenic |
| AAACTAATCCTACATGTTAC+AGG | 0.309421 | 2_4:+11464745 | None:intergenic |
| TTCAACTCCTTTCGCCTTTG+TGG | 0.332527 | 2_4:+11466523 | None:intergenic |
| GTTAAAGTTATTAGAAGCTT+GGG | 0.334551 | 2_4:-11465809 | Msa0315250:CDS |
| ACAAGAGCAATTGGTGGTTC+TGG | 0.341427 | 2_4:-11466932 | Msa0315250:CDS |
| TCAACTCCTTTCGCCTTTGT+GGG | 0.346043 | 2_4:+11466524 | None:intergenic |
| CTTAATTCTAATAATGGTTC+AGG | 0.357073 | 2_4:-11466866 | Msa0315250:CDS |
| AGGAAATTCAGTGGATTCTA+TGG | 0.360707 | 2_4:+11467219 | None:intergenic |
| CATAACATTATTTCTGAACT+TGG | 0.360742 | 2_4:+11465990 | None:intergenic |
| TTGTTCTATAATTCTATCTT+CGG | 0.365225 | 2_4:+11467048 | None:intergenic |
| AGCAGAATGCAAACACTCTT+TGG | 0.368717 | 2_4:+11465747 | None:intergenic |
| AATGGTTCAGGCATTGTTCC+AGG | 0.369988 | 2_4:-11466854 | Msa0315250:CDS |
| CGATGAAGCTTTGGCTTCTC+CGG | 0.373848 | 2_4:-11466753 | Msa0315250:CDS |
| GCCTGGTTCAATTTGAAGAT+TGG | 0.377854 | 2_4:-11464966 | Msa0315250:CDS |
| CAAGTCATCGATTCGGAGCC+AGG | 0.381540 | 2_4:-11467176 | Msa0315250:CDS |
| AGAGCAATTTGATATGTGTC+TGG | 0.382143 | 2_4:-11466023 | Msa0315250:CDS |
| ACTGCTAGGGATTACTTCAT+AGG | 0.393630 | 2_4:-11464917 | Msa0315250:exon |
| CAAAGCTTCATCGTTGGATT+CGG | 0.396860 | 2_4:+11466763 | None:intergenic |
| TACAGCCATTGCTATTCGTC+AGG | 0.408751 | 2_4:-11465441 | Msa0315250:CDS |
| AATGATCAAACAAGAGCAAT+TGG | 0.411484 | 2_4:-11466941 | Msa0315250:CDS |
| CGAATCCAACGATGAAGCTT+TGG | 0.414379 | 2_4:-11466762 | Msa0315250:CDS |
| AAGAGGACTAATTCGATTAT+GGG | 0.415508 | 2_4:-11466605 | Msa0315250:CDS |
| GCATCACTCATCAACCTTGT+AGG | 0.424035 | 2_4:+11466707 | None:intergenic |
| ATCTGGAGAAATAAAACTTA+AGG | 0.425678 | 2_4:+11464703 | None:intergenic |
| AGTTAAAGTTATTAGAAGCT+TGG | 0.428073 | 2_4:-11465810 | Msa0315250:CDS |
| TGCTGCAATACTATCAGAAT+TGG | 0.434012 | 2_4:-11465192 | Msa0315250:CDS |
| GAAACTTACTGCAGGTGAAA+AGG | 0.439050 | 2_4:+11465379 | None:intergenic |
| TGTGTGCAGAGTTCCTCTTT+TGG | 0.450064 | 2_4:-11465725 | Msa0315250:CDS |
| GGCCTTAATTCGCCGTCGAA+TGG | 0.452120 | 2_4:-11466452 | Msa0315250:CDS |
| TCACAGTGGGCTTTGTCACC+AGG | 0.459279 | 2_4:-11466566 | Msa0315250:CDS |
| GGAGCTTCTGATTCTAACAT+TGG | 0.470930 | 2_4:-11466662 | Msa0315250:CDS |
| CTTTGTTGACGAGGGTTCAC+CGG | 0.482670 | 2_4:+11467268 | None:intergenic |
| TCTCTATGTCGATATAGATC+AGG | 0.486087 | 2_4:-11464894 | Msa0315250:three_prime_UTR |
| CTGTTCTACGTCGTCAACTC+TGG | 0.489175 | 2_4:-11467117 | Msa0315250:CDS |
| CAACTGCAGGATTTACTGCT+AGG | 0.490974 | 2_4:-11464931 | Msa0315250:CDS |
| TTCTATGGAGGTGGAAGGCG+AGG | 0.496580 | 2_4:+11467234 | None:intergenic |
| TTGATAATCGTTTGATTCAG+TGG | 0.496593 | 2_4:-11466391 | Msa0315250:CDS |
| TTCAGTGGATTCTATGGAGG+TGG | 0.499093 | 2_4:+11467225 | None:intergenic |
| TTCAATTTGAAGATTGGCAA+AGG | 0.500856 | 2_4:-11464960 | Msa0315250:CDS |
| CTTGTAGGAACTTCCACCAC+TGG | 0.509361 | 2_4:+11466722 | None:intergenic |
| GGTGGTTCTGGAAGATTCAC+AGG | 0.510011 | 2_4:-11466920 | Msa0315250:CDS |
| ACCTTAGAACCTTCCAAAAG+AGG | 0.510568 | 2_4:+11465712 | None:intergenic |
| GACTTGCGTATGACGGAGGA+AGG | 0.513844 | 2_4:+11467193 | None:intergenic |
| GCCAATCTTCAAATTGAACC+AGG | 0.515880 | 2_4:+11464965 | None:intergenic |
| GAGCTTCTGATTCTAACATT+GGG | 0.516533 | 2_4:-11466661 | Msa0315250:CDS |
| ACATAACATATCTGTTGTTG+AGG | 0.527727 | 2_4:-11465117 | Msa0315250:intron |
| GAATTAGTCCTCTTCATCAT+CGG | 0.532045 | 2_4:+11466614 | None:intergenic |
| ATTAGAAGCTTGGGGAAGCA+TGG | 0.534664 | 2_4:-11465800 | Msa0315250:CDS |
| CTTGAAAACTCTGACCTCCC+TGG | 0.540193 | 2_4:+11466548 | None:intergenic |
| CTTGCGTATGACGGAGGAAG+GGG | 0.541168 | 2_4:+11467195 | None:intergenic |
| GAAGTGTTTCGCGCCTTCAT+CGG | 0.542889 | 2_4:+11467292 | None:intergenic |
| CGTTGAAACCGATGATGAAG+AGG | 0.543848 | 2_4:-11466622 | Msa0315250:CDS |
| CAACTCCTTTCGCCTTTGTG+GGG | 0.545829 | 2_4:+11466525 | None:intergenic |
| AAATTCAAGCTTAACTAGCT+CGG | 0.547052 | 2_4:-11466792 | Msa0315250:CDS |
| TGAACCCTCGTCAACAAAGA+AGG | 0.550286 | 2_4:-11467264 | Msa0315250:CDS |
| GCAAAGGAAATATCAACTGC+AGG | 0.551022 | 2_4:-11464944 | Msa0315250:CDS |
| TCTAACATTGGGAATTTGAA+CGG | 0.552992 | 2_4:-11466650 | Msa0315250:CDS |
| AACTGCAGGATTTACTGCTA+GGG | 0.555292 | 2_4:-11464930 | Msa0315250:CDS |
| AGAATGCAAACACTCTTTGG+TGG | 0.563685 | 2_4:+11465750 | None:intergenic |
| AGAAGCCAAAGCTTCATCGT+TGG | 0.566476 | 2_4:+11466757 | None:intergenic |
| TCATACGCAAGTCATCGATT+CGG | 0.566805 | 2_4:-11467183 | Msa0315250:CDS |
| AGATTAAACCTGTAACATGT+AGG | 0.572437 | 2_4:-11464753 | Msa0315250:three_prime_UTR |
| TCAAGCCCCACAAAGGCGAA+AGG | 0.573131 | 2_4:-11466530 | Msa0315250:CDS |
| AATCGATGACTTGCGTATGA+CGG | 0.575103 | 2_4:+11467186 | None:intergenic |
| TTCGGAGCCAGGAAGACGAT+AGG | 0.577435 | 2_4:-11467165 | Msa0315250:CDS |
| GAGCAATTTGATATGTGTCT+GGG | 0.582338 | 2_4:-11466022 | Msa0315250:CDS |
| TCCGGCAAGAAAACCAGTGG+TGG | 0.587118 | 2_4:-11466735 | Msa0315250:CDS |
| GAAACCTTCTTTGTTGACGA+GGG | 0.587157 | 2_4:+11467260 | None:intergenic |
| CACAGTGGGCTTTGTCACCA+GGG | 0.588640 | 2_4:-11466565 | Msa0315250:CDS |
| AAGCAGTGTAAAGTGCAGCC+TGG | 0.591075 | 2_4:-11464983 | Msa0315250:CDS |
| CAGTGGTGGAAGTTCCTACA+AGG | 0.591497 | 2_4:-11466721 | Msa0315250:CDS |
| GAAGGCGCGAAACACTTCTC+CGG | 0.599113 | 2_4:-11467287 | Msa0315250:CDS |
| TTGTTTCCAAAACCATTCGA+CGG | 0.600083 | 2_4:+11466440 | None:intergenic |
| GTTCAGGCATTGTTCCAGGA+AGG | 0.601143 | 2_4:-11466850 | Msa0315250:CDS |
| ACTTGCGTATGACGGAGGAA+GGG | 0.602214 | 2_4:+11467194 | None:intergenic |
| AGAAACCTTCTTTGTTGACG+AGG | 0.602654 | 2_4:+11467259 | None:intergenic |
| GATCAAACAAGAGCAATTGG+TGG | 0.611838 | 2_4:-11466938 | Msa0315250:CDS |
| GTGGATTCTATGGAGGTGGA+AGG | 0.624761 | 2_4:+11467229 | None:intergenic |
| CGATGACTTGCGTATGACGG+AGG | 0.625049 | 2_4:+11467189 | None:intergenic |
| AAGCTTGGGGAAGCATGGAA+AGG | 0.627108 | 2_4:-11465795 | Msa0315250:CDS |
| TTAAAGTTATTAGAAGCTTG+GGG | 0.627151 | 2_4:-11465808 | Msa0315250:CDS |
| TGAGTGATGCAACATTGAGA+AGG | 0.641073 | 2_4:-11466694 | Msa0315250:CDS |
| CAAGAGTTCGAAATCACAGT+GGG | 0.647303 | 2_4:-11466579 | Msa0315250:CDS |
| AGAGGCCTGACGAATAGCAA+TGG | 0.649950 | 2_4:+11465436 | None:intergenic |
| ACATTGAGAAGGGCTAGAAG+AGG | 0.654076 | 2_4:-11466683 | Msa0315250:CDS |
| TTCTCCGGCAAGAAAACCAG+TGG | 0.654553 | 2_4:-11466738 | Msa0315250:CDS |
| TCTATGGAGGTGGAAGGCGA+GGG | 0.655607 | 2_4:+11467235 | None:intergenic |
| AAATTCAGTGGATTCTATGG+AGG | 0.656704 | 2_4:+11467222 | None:intergenic |
| GAGTGATGCAACATTGAGAA+GGG | 0.656920 | 2_4:-11466693 | Msa0315250:CDS |
| CGTATGACGGAGGAAGGGGA+AGG | 0.662645 | 2_4:+11467199 | None:intergenic |
| AGAGGACTAATTCGATTATG+GGG | 0.664661 | 2_4:-11466604 | Msa0315250:CDS |
| AATGGAAGCTGTGAGATCAG+AGG | 0.667538 | 2_4:+11465418 | None:intergenic |
| GGAAGGGGAAGGAAATTCAG+TGG | 0.670014 | 2_4:+11467210 | None:intergenic |
| AATTTGATATGTGTCTGGGA+TGG | 0.675214 | 2_4:-11466018 | Msa0315250:CDS |
| AAACATTTCTCGCCACGCCG+AGG | 0.686205 | 2_4:-11466333 | Msa0315250:intron |
| CAAACAAGTGTACCTCGGCG+TGG | 0.735517 | 2_4:+11466321 | None:intergenic |
| AGTGGGCTTTGTCACCAGGG+AGG | 0.741250 | 2_4:-11466562 | Msa0315250:CDS |
| ACAAGAGTTCGAAATCACAG+TGG | 0.753232 | 2_4:-11466580 | Msa0315250:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATTACAAAAACAAATT+TGG | + | chr2_4:11466126-11466145 | None:intergenic | 10.0% |
| !!! | TTTAATTTTTGAAATTGTAA+CGG | + | chr2_4:11466397-11466416 | None:intergenic | 10.0% |
| !!! | AAATCCTTTTAATTTATTTA+TGG | - | chr2_4:11466945-11466964 | Msa0315250:CDS | 10.0% |
| !! | AAATTGAATTAACATTATCT+TGG | - | chr2_4:11465930-11465949 | Msa0315250:CDS | 15.0% |
| !! | ATACATATAAAAAGTTTCAA+TGG | + | chr2_4:11466446-11466465 | None:intergenic | 15.0% |
| !! | AGAAAACAAAAGATATATTT+GGG | + | chr2_4:11466729-11466748 | None:intergenic | 15.0% |
| !! | TCAACCATAAATAAATTAAA+AGG | + | chr2_4:11466952-11466971 | None:intergenic | 15.0% |
| !! | TTGTTCTATAATTCTATCTT+CGG | + | chr2_4:11464946-11464965 | None:intergenic | 20.0% |
| !! | AAGAAGCTTAATTCTAATAA+TGG | - | chr2_4:11465119-11465138 | Msa0315250:CDS | 20.0% |
| !!! | AACTGATGTATTGTTATTTT+TGG | - | chr2_4:11466157-11466176 | Msa0315250:intron | 20.0% |
| !!! | TTTTTTTATGCTTATCTTAC+AGG | - | chr2_4:11466514-11466533 | Msa0315250:CDS | 20.0% |
| !! | CAGAAAACAAAAGATATATT+TGG | + | chr2_4:11466730-11466749 | None:intergenic | 20.0% |
| !!! | AATATATCTTTTGTTTTCTG+AGG | - | chr2_4:11466730-11466749 | Msa0315250:CDS | 20.0% |
| !!! | ATATATCTTTTGTTTTCTGA+GGG | - | chr2_4:11466731-11466750 | Msa0315250:CDS | 20.0% |
| !!! | GATTTTATCACTATATATGT+TGG | - | chr2_4:11466974-11466993 | Msa0315250:CDS | 20.0% |
| ! | CTTAATTCTAATAATGGTTC+AGG | - | chr2_4:11465125-11465144 | Msa0315250:CDS | 25.0% |
| !! | GTTGAAAAACTACTCAATTT+TGG | - | chr2_4:11465485-11465504 | Msa0315250:intron | 25.0% |
| ! | TTCAAGAGTAAAAAATCTGT+TGG | - | chr2_4:11465518-11465537 | Msa0315250:intron | 25.0% |
| ! | TGAAAACAACTTACAACTTA+CGG | + | chr2_4:11465734-11465753 | None:intergenic | 25.0% |
| ! | TGTTGAAATAAACTGAAACT+AGG | - | chr2_4:11465772-11465791 | Msa0315250:CDS | 25.0% |
| ! | AGTTTATGCTATAAGATAGT+TGG | - | chr2_4:11465844-11465863 | Msa0315250:intron | 25.0% |
| !!! | CATAACATTATTTCTGAACT+TGG | + | chr2_4:11466004-11466023 | None:intergenic | 25.0% |
| ! | AATTAGGTTTACTACTTACT+TGG | + | chr2_4:11466089-11466108 | None:intergenic | 25.0% |
| ! | GGTAGATGTTAATGAAAATT+AGG | + | chr2_4:11466105-11466124 | None:intergenic | 25.0% |
| ! | ATAACAATACATCAGTTAAG+AGG | + | chr2_4:11466154-11466173 | None:intergenic | 25.0% |
| ! | AGTTAAAGTTATTAGAAGCT+TGG | - | chr2_4:11466181-11466200 | Msa0315250:intron | 25.0% |
| ! | GTTAAAGTTATTAGAAGCTT+GGG | - | chr2_4:11466182-11466201 | Msa0315250:intron | 25.0% |
| ! | TTAAAGTTATTAGAAGCTTG+GGG | - | chr2_4:11466183-11466202 | Msa0315250:intron | 25.0% |
| !!! | ATTTTTGAAATTGTAACGGT+CGG | + | chr2_4:11466393-11466412 | None:intergenic | 25.0% |
| ! | ATCTGGAGAAATAAAACTTA+AGG | + | chr2_4:11467291-11467310 | None:intergenic | 25.0% |
| AATGATCAAACAAGAGCAAT+TGG | - | chr2_4:11465050-11465069 | Msa0315250:intron | 30.0% | |
| ! | TAGTTTAGCATTTTCATCCA+AGG | + | chr2_4:11465171-11465190 | None:intergenic | 30.0% |
| AAATTCAAGCTTAACTAGCT+CGG | - | chr2_4:11465199-11465218 | Msa0315250:CDS | 30.0% | |
| TCTAACATTGGGAATTTGAA+CGG | - | chr2_4:11465341-11465360 | Msa0315250:intron | 30.0% | |
| AAGAGGACTAATTCGATTAT+GGG | - | chr2_4:11465386-11465405 | Msa0315250:intron | 30.0% | |
| ! | TTGATAATCGTTTGATTCAG+TGG | - | chr2_4:11465600-11465619 | Msa0315250:intron | 30.0% |
| !! | AGTTGTTTTCATAAGTTGTC+CGG | - | chr2_4:11465743-11465762 | Msa0315250:CDS | 30.0% |
| GTTTATTTCAACAAGTGTTC+CGG | + | chr2_4:11465765-11465784 | None:intergenic | 30.0% | |
| ATTGTCTAAGTGATCATGAT+AGG | - | chr2_4:11466470-11466489 | Msa0315250:CDS | 30.0% | |
| TTGTCTAAGTGATCATGATA+GGG | - | chr2_4:11466471-11466490 | Msa0315250:CDS | 30.0% | |
| !! | GGAAGTTAACATTGACTTAA+TGG | + | chr2_4:11466594-11466613 | None:intergenic | 30.0% |
| GCTAAACATTGTGGTTAATT+AGG | - | chr2_4:11466650-11466669 | Msa0315250:CDS | 30.0% | |
| ACATAACATATCTGTTGTTG+AGG | - | chr2_4:11466874-11466893 | Msa0315250:CDS | 30.0% | |
| TTCAATTTGAAGATTGGCAA+AGG | - | chr2_4:11467031-11467050 | Msa0315250:CDS | 30.0% | |
| !! | GCAAGTTTTGTACTTATACA+TGG | - | chr2_4:11467210-11467229 | Msa0315250:CDS | 30.0% |
| CATGTTACAGGTTTAATCTT+AGG | + | chr2_4:11467237-11467256 | None:intergenic | 30.0% | |
| AGATTAAACCTGTAACATGT+AGG | - | chr2_4:11467238-11467257 | Msa0315250:CDS | 30.0% | |
| AAACTAATCCTACATGTTAC+AGG | + | chr2_4:11467249-11467268 | None:intergenic | 30.0% | |
| ! | AAATTCAGTGGATTCTATGG+AGG | + | chr2_4:11464772-11464791 | None:intergenic | 35.0% |
| ! | AGGAAATTCAGTGGATTCTA+TGG | + | chr2_4:11464775-11464794 | None:intergenic | 35.0% |
| !! | GACTTATTTTTCGCAGAAGA+AGG | + | chr2_4:11464900-11464919 | None:intergenic | 35.0% |
| TCTTCTGCGAAAAATAAGTC+TGG | - | chr2_4:11464900-11464919 | Msa0315250:exon | 35.0% | |
| GAGCTTCTGATTCTAACATT+GGG | - | chr2_4:11465330-11465349 | Msa0315250:intron | 35.0% | |
| GAATTAGTCCTCTTCATCAT+CGG | + | chr2_4:11465380-11465399 | None:intergenic | 35.0% | |
| GAAGAGGACTAATTCGATTA+TGG | - | chr2_4:11465385-11465404 | Msa0315250:intron | 35.0% | |
| AGAGGACTAATTCGATTATG+GGG | - | chr2_4:11465387-11465406 | Msa0315250:intron | 35.0% | |
| TTGTTTCCAAAACCATTCGA+CGG | + | chr2_4:11465554-11465573 | None:intergenic | 35.0% | |
| TTAGACAAACAAGTGTACCT+CGG | + | chr2_4:11465678-11465697 | None:intergenic | 35.0% | |
| AGAGCAATTTGATATGTGTC+TGG | - | chr2_4:11465968-11465987 | Msa0315250:CDS | 35.0% | |
| GAGCAATTTGATATGTGTCT+GGG | - | chr2_4:11465969-11465988 | Msa0315250:CDS | 35.0% | |
| AATTTGATATGTGTCTGGGA+TGG | - | chr2_4:11465973-11465992 | Msa0315250:CDS | 35.0% | |
| !! | ATTGCTATTTCGCAAACTTG+AGG | - | chr2_4:11466356-11466375 | Msa0315250:CDS | 35.0% |
| !! | TTGCTATTTCGCAAACTTGA+GGG | - | chr2_4:11466357-11466376 | Msa0315250:CDS | 35.0% |
| !! | ACAACTTTGAAACTTACTGC+AGG | + | chr2_4:11466623-11466642 | None:intergenic | 35.0% |
| GTTAATGACGCTAAACATTG+TGG | - | chr2_4:11466641-11466660 | Msa0315250:CDS | 35.0% | |
| GGAAAAATTTCTCTGTCAAC+AGG | - | chr2_4:11466766-11466785 | Msa0315250:CDS | 35.0% | |
| TGCTGCAATACTATCAGAAT+TGG | - | chr2_4:11466799-11466818 | Msa0315250:CDS | 35.0% | |
| TCTCTATGTCGATATAGATC+AGG | - | chr2_4:11467097-11467116 | Msa0315250:CDS | 35.0% | |
| GAAACCTTCTTTGTTGACGA+GGG | + | chr2_4:11464734-11464753 | None:intergenic | 40.0% | |
| AGAAACCTTCTTTGTTGACG+AGG | + | chr2_4:11464735-11464754 | None:intergenic | 40.0% | |
| ! | AATCGATGACTTGCGTATGA+CGG | + | chr2_4:11464808-11464827 | None:intergenic | 40.0% |
| ! | TCATACGCAAGTCATCGATT+CGG | - | chr2_4:11464808-11464827 | Msa0315250:three_prime_UTR | 40.0% |
| GATCAAACAAGAGCAATTGG+TGG | - | chr2_4:11465053-11465072 | Msa0315250:intron | 40.0% | |
| CAAAGCTTCATCGTTGGATT+CGG | + | chr2_4:11465231-11465250 | None:intergenic | 40.0% | |
| TGAGTGATGCAACATTGAGA+AGG | - | chr2_4:11465297-11465316 | Msa0315250:intron | 40.0% | |
| GAGTGATGCAACATTGAGAA+GGG | - | chr2_4:11465298-11465317 | Msa0315250:intron | 40.0% | |
| GGAGCTTCTGATTCTAACAT+TGG | - | chr2_4:11465329-11465348 | Msa0315250:intron | 40.0% | |
| ACAAGAGTTCGAAATCACAG+TGG | - | chr2_4:11465411-11465430 | Msa0315250:CDS | 40.0% | |
| CAAGAGTTCGAAATCACAGT+GGG | - | chr2_4:11465412-11465431 | Msa0315250:CDS | 40.0% | |
| AGAATGCAAACACTCTTTGG+TGG | + | chr2_4:11466244-11466263 | None:intergenic | 40.0% | |
| AGCAGAATGCAAACACTCTT+TGG | + | chr2_4:11466247-11466266 | None:intergenic | 40.0% | |
| !! | TCCTCTTTTGGAAGGTTCTA+AGG | - | chr2_4:11466278-11466297 | Msa0315250:intron | 40.0% |
| ACCTTAGAACCTTCCAAAAG+AGG | + | chr2_4:11466282-11466301 | None:intergenic | 40.0% | |
| CTAAGTGATCATGATAGGGA+TGG | - | chr2_4:11466475-11466494 | Msa0315250:CDS | 40.0% | |
| GAAACTTACTGCAGGTGAAA+AGG | + | chr2_4:11466615-11466634 | None:intergenic | 40.0% | |
| ! | TTCTGAGGGCTGAATTCATA+TGG | - | chr2_4:11466745-11466764 | Msa0315250:CDS | 40.0% |
| GCCTGGTTCAATTTGAAGAT+TGG | - | chr2_4:11467025-11467044 | Msa0315250:CDS | 40.0% | |
| GCCAATCTTCAAATTGAACC+AGG | + | chr2_4:11467029-11467048 | None:intergenic | 40.0% | |
| GCAAAGGAAATATCAACTGC+AGG | - | chr2_4:11467047-11467066 | Msa0315250:CDS | 40.0% | |
| AACTGCAGGATTTACTGCTA+GGG | - | chr2_4:11467061-11467080 | Msa0315250:CDS | 40.0% | |
| ACTGCTAGGGATTACTTCAT+AGG | - | chr2_4:11467074-11467093 | Msa0315250:CDS | 40.0% | |
| TGAACCCTCGTCAACAAAGA+AGG | - | chr2_4:11464727-11464746 | Msa0315250:three_prime_UTR | 45.0% | |
| ! | TTCAGTGGATTCTATGGAGG+TGG | + | chr2_4:11464769-11464788 | None:intergenic | 45.0% |
| ! | ACAAGAGCAATTGGTGGTTC+TGG | - | chr2_4:11465059-11465078 | Msa0315250:intron | 45.0% |
| ! | AATGGTTCAGGCATTGTTCC+AGG | - | chr2_4:11465137-11465156 | Msa0315250:CDS | 45.0% |
| ! | TGTTCCAGGAAGGTTTTCCT+TGG | - | chr2_4:11465151-11465170 | Msa0315250:CDS | 45.0% |
| TCATCCAAGGAAAACCTTCC+TGG | + | chr2_4:11465158-11465177 | None:intergenic | 45.0% | |
| CGAATCCAACGATGAAGCTT+TGG | - | chr2_4:11465229-11465248 | Msa0315250:intron | 45.0% | |
| AGAAGCCAAAGCTTCATCGT+TGG | + | chr2_4:11465237-11465256 | None:intergenic | 45.0% | |
| GCATCACTCATCAACCTTGT+AGG | + | chr2_4:11465287-11465306 | None:intergenic | 45.0% | |
| ACATTGAGAAGGGCTAGAAG+AGG | - | chr2_4:11465308-11465327 | Msa0315250:intron | 45.0% | |
| CGTTGAAACCGATGATGAAG+AGG | - | chr2_4:11465369-11465388 | Msa0315250:intron | 45.0% | |
| !! | AGAGTTTTCAAGCCCCACAA+AGG | - | chr2_4:11465454-11465473 | Msa0315250:CDS | 45.0% |
| TCAACTCCTTTCGCCTTTGT+GGG | + | chr2_4:11465470-11465489 | None:intergenic | 45.0% | |
| TTCAACTCCTTTCGCCTTTG+TGG | + | chr2_4:11465471-11465490 | None:intergenic | 45.0% | |
| AACCATTCGACGGCGAATTA+AGG | + | chr2_4:11465544-11465563 | None:intergenic | 45.0% | |
| ! | AATTCGCCGTCGAATGGTTT+TGG | - | chr2_4:11465545-11465564 | Msa0315250:intron | 45.0% |
| ATTAGAAGCTTGGGGAAGCA+TGG | - | chr2_4:11466191-11466210 | Msa0315250:intron | 45.0% | |
| ! | TGTGTGCAGAGTTCCTCTTT+TGG | - | chr2_4:11466266-11466285 | Msa0315250:intron | 45.0% |
| ! | TGCAGAGTTCCTCTTTTGGA+AGG | - | chr2_4:11466270-11466289 | Msa0315250:intron | 45.0% |
| ! | TACAGCCATTGCTATTCGTC+AGG | - | chr2_4:11466550-11466569 | Msa0315250:CDS | 45.0% |
| AATGGAAGCTGTGAGATCAG+AGG | + | chr2_4:11466576-11466595 | None:intergenic | 45.0% | |
| CAACTGCAGGATTTACTGCT+AGG | - | chr2_4:11467060-11467079 | Msa0315250:CDS | 45.0% | |
| CTTTGTTGACGAGGGTTCAC+CGG | + | chr2_4:11464726-11464745 | None:intergenic | 50.0% | |
| GTGGATTCTATGGAGGTGGA+AGG | + | chr2_4:11464765-11464784 | None:intergenic | 50.0% | |
| GGAAGGGGAAGGAAATTCAG+TGG | + | chr2_4:11464784-11464803 | None:intergenic | 50.0% | |
| ! | ACTTGCGTATGACGGAGGAA+GGG | + | chr2_4:11464800-11464819 | None:intergenic | 50.0% |
| TGTGTCTCCTATCGTCTTCC+TGG | + | chr2_4:11464836-11464855 | None:intergenic | 50.0% | |
| CTGTTCTACGTCGTCAACTC+TGG | - | chr2_4:11464874-11464893 | Msa0315250:three_prime_UTR | 50.0% | |
| !! | GGTGGTTCTGGAAGATTCAC+AGG | - | chr2_4:11465071-11465090 | Msa0315250:intron | 50.0% |
| ! | GTTCAGGCATTGTTCCAGGA+AGG | - | chr2_4:11465141-11465160 | Msa0315250:CDS | 50.0% |
| ! | CGATGAAGCTTTGGCTTCTC+CGG | - | chr2_4:11465238-11465257 | Msa0315250:intron | 50.0% |
| TTCTCCGGCAAGAAAACCAG+TGG | - | chr2_4:11465253-11465272 | Msa0315250:intron | 50.0% | |
| !!! | TCCACCACTGGTTTTCTTGC+CGG | + | chr2_4:11465260-11465279 | None:intergenic | 50.0% |
| CTTGTAGGAACTTCCACCAC+TGG | + | chr2_4:11465272-11465291 | None:intergenic | 50.0% | |
| ! | CAGTGGTGGAAGTTCCTACA+AGG | - | chr2_4:11465270-11465289 | Msa0315250:intron | 50.0% |
| CTTGAAAACTCTGACCTCCC+TGG | + | chr2_4:11465446-11465465 | None:intergenic | 50.0% | |
| CAACTCCTTTCGCCTTTGTG+GGG | + | chr2_4:11465469-11465488 | None:intergenic | 50.0% | |
| ! | AAGCTTGGGGAAGCATGGAA+AGG | - | chr2_4:11466196-11466215 | Msa0315250:intron | 50.0% |
| ! | GATAGGGATGGTGCATTGAC+AGG | - | chr2_4:11466487-11466506 | Msa0315250:CDS | 50.0% |
| AGAGGCCTGACGAATAGCAA+TGG | + | chr2_4:11466558-11466577 | None:intergenic | 50.0% | |
| AAGCAGTGTAAAGTGCAGCC+TGG | - | chr2_4:11467008-11467027 | Msa0315250:CDS | 50.0% | |
| ! | GAAGGCGCGAAACACTTCTC+CGG | - | chr2_4:11464704-11464723 | Msa0315250:three_prime_UTR | 55.0% |
| TCTATGGAGGTGGAAGGCGA+GGG | + | chr2_4:11464759-11464778 | None:intergenic | 55.0% | |
| TTCTATGGAGGTGGAAGGCG+AGG | + | chr2_4:11464760-11464779 | None:intergenic | 55.0% | |
| ! | CTTGCGTATGACGGAGGAAG+GGG | + | chr2_4:11464799-11464818 | None:intergenic | 55.0% |
| ! | GACTTGCGTATGACGGAGGA+AGG | + | chr2_4:11464801-11464820 | None:intergenic | 55.0% |
| ! | CGATGACTTGCGTATGACGG+AGG | + | chr2_4:11464805-11464824 | None:intergenic | 55.0% |
| !! | CAAGTCATCGATTCGGAGCC+AGG | - | chr2_4:11464815-11464834 | Msa0315250:three_prime_UTR | 55.0% |
| TTCGGAGCCAGGAAGACGAT+AGG | - | chr2_4:11464826-11464845 | Msa0315250:three_prime_UTR | 55.0% | |
| TCCGGCAAGAAAACCAGTGG+TGG | - | chr2_4:11465256-11465275 | Msa0315250:intron | 55.0% | |
| ! | TCACAGTGGGCTTTGTCACC+AGG | - | chr2_4:11465425-11465444 | Msa0315250:CDS | 55.0% |
| ! | CACAGTGGGCTTTGTCACCA+GGG | - | chr2_4:11465426-11465445 | Msa0315250:CDS | 55.0% |
| TCAAGCCCCACAAAGGCGAA+AGG | - | chr2_4:11465461-11465480 | Msa0315250:intron | 55.0% | |
| GGCCTTAATTCGCCGTCGAA+TGG | - | chr2_4:11465539-11465558 | Msa0315250:intron | 55.0% | |
| AAACATTTCTCGCCACGCCG+AGG | - | chr2_4:11465658-11465677 | Msa0315250:intron | 55.0% | |
| CAAACAAGTGTACCTCGGCG+TGG | + | chr2_4:11465673-11465692 | None:intergenic | 55.0% | |
| ! | CGTATGACGGAGGAAGGGGA+AGG | + | chr2_4:11464795-11464814 | None:intergenic | 60.0% |
| ! | AGTGGGCTTTGTCACCAGGG+AGG | - | chr2_4:11465429-11465448 | Msa0315250:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 11464702 | 11467311 | 11464702 | ID=Msa0315250;Name=Msa0315250 |
| chr2_4 | mRNA | 11464702 | 11467311 | 11464702 | ID=Msa0315250-mRNA-1;Parent=Msa0315250;Name=Msa0315250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0.6|0.5|1|1|1|6|216|502 |
| chr2_4 | exon | 11464702 | 11465013 | 11464702 | ID=Msa0315250-mRNA-1:exon:4411;Parent=Msa0315250-mRNA-1 |
| chr2_4 | exon | 11465118 | 11465225 | 11465118 | ID=Msa0315250-mRNA-1:exon:4410;Parent=Msa0315250-mRNA-1 |
| chr2_4 | exon | 11465388 | 11465477 | 11465388 | ID=Msa0315250-mRNA-1:exon:4409;Parent=Msa0315250-mRNA-1 |
| chr2_4 | exon | 11465714 | 11465830 | 11465714 | ID=Msa0315250-mRNA-1:exon:4408;Parent=Msa0315250-mRNA-1 |
| chr2_4 | exon | 11465924 | 11466043 | 11465924 | ID=Msa0315250-mRNA-1:exon:4407;Parent=Msa0315250-mRNA-1 |
| chr2_4 | exon | 11466334 | 11467311 | 11466334 | ID=Msa0315250-mRNA-1:exon:4406;Parent=Msa0315250-mRNA-1 |
| chr2_4 | CDS | 11466334 | 11467311 | 11466334 | ID=Msa0315250-mRNA-1:cds;Parent=Msa0315250-mRNA-1 |
| chr2_4 | CDS | 11465924 | 11466043 | 11465924 | ID=Msa0315250-mRNA-1:cds;Parent=Msa0315250-mRNA-1 |
| chr2_4 | CDS | 11465714 | 11465830 | 11465714 | ID=Msa0315250-mRNA-1:cds;Parent=Msa0315250-mRNA-1 |
| chr2_4 | CDS | 11465388 | 11465477 | 11465388 | ID=Msa0315250-mRNA-1:cds;Parent=Msa0315250-mRNA-1 |
| chr2_4 | CDS | 11465118 | 11465225 | 11465118 | ID=Msa0315250-mRNA-1:cds;Parent=Msa0315250-mRNA-1 |
| chr2_4 | CDS | 11464918 | 11465013 | 11464918 | ID=Msa0315250-mRNA-1:cds;Parent=Msa0315250-mRNA-1 |
| chr2_4 | three_prime_UTR | 11464702 | 11464917 | 11464702 | ID=Msa0315250-mRNA-1:three_prime_utr;Parent=Msa0315250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
