AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1200070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200070 MtrunA17_Chr8g0369621 97.254 619 12 2 1 619 1 614 0.0 1206
Msa1200070 MtrunA17_Chr5g0408921 74.435 575 141 4 47 618 1 572 0.0 850
Msa1200070 MtrunA17_Chr7g0251871 57.840 574 226 3 47 616 1 562 0.0 624
Msa1200070 MtrunA17_Chr3g0106801 37.719 570 291 16 47 606 1 516 4.54e-100 314
Msa1200070 MtrunA17_Chr4g0037301 32.746 568 325 15 51 606 13 535 7.22e-80 262
Msa1200070 MtrunA17_Chr5g0405621 31.818 572 337 14 51 616 11 535 6.91e-71 238
Msa1200070 MtrunA17_Chr4g0064981 28.130 583 365 16 48 605 6 559 2.95e-52 189
Msa1200070 MtrunA17_Chr2g0304561 27.682 578 378 15 43 605 1 553 9.28e-52 187
Msa1200070 MtrunA17_Chr3g0106821 44.000 225 118 5 47 269 1 219 8.61e-50 177
Msa1200070 MtrunA17_Chr3g0106821 44.792 96 46 2 362 457 285 373 1.99e-16 81.6
Msa1200070 MtrunA17_Chr1g0210274 23.569 594 405 13 39 617 12 571 3.09e-25 110
Msa1200070 MtrunA17_Chr1g0210291 24.207 599 395 18 39 618 11 569 7.86e-25 109
Msa1200070 MtrunA17_Chr7g0264861 23.438 576 397 15 53 611 29 577 1.43e-24 108
Msa1200070 MtrunA17_Chr1g0174101 23.199 569 384 15 53 605 24 555 1.98e-23 104
Msa1200070 MtrunA17_Chr1g0210284 23.529 595 404 14 39 617 12 571 2.24e-23 104
Msa1200070 MtrunA17_Chr3g0106831 42.105 133 67 2 474 606 1 123 3.52e-23 95.1
Msa1200070 MtrunA17_Chr1g0171591 24.779 565 389 16 53 605 24 564 2.46e-21 98.2
Msa1200070 MtrunA17_Chr5g0442481 30.088 226 139 7 395 613 319 532 3.22e-20 94.7
Msa1200070 MtrunA17_Chr7g0225191 29.545 176 123 1 53 227 15 190 4.31e-19 91.3
Msa1200070 MtrunA17_Chr7g0225191 26.592 267 153 9 364 604 327 576 7.48e-14 74.7
Msa1200070 MtrunA17_Chr2g0330551 22.298 583 367 16 51 605 5 529 6.16e-18 87.4
Msa1200070 MtrunA17_Chr3g0132161 27.586 174 125 1 52 224 14 187 1.52e-17 86.3
Msa1200070 MtrunA17_Chr3g0132161 26.939 245 148 7 386 606 318 555 9.04e-13 71.2
Msa1200070 MtrunA17_Chr2g0333371 26.000 250 143 7 361 605 77 289 2.39e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1200070 AT4G19450.1 69.739 575 163 4 47 616 1 569 0.0 776
Msa1200070 AT5G45275.1 69.151 577 163 4 47 617 1 568 0.0 771
Msa1200070 AT1G31470.1 56.149 618 219 12 1 613 1 571 0.0 593
Msa1200070 AT4G19450.2 69.212 419 119 3 47 460 1 414 0.0 570
Msa1200070 AT3G01630.2 50.264 569 236 8 52 612 40 569 0.0 528
Msa1200070 AT3G01630.1 50.264 569 236 8 52 612 22 551 0.0 527
Msa1200070 AT2G30300.1 34.507 568 289 15 51 606 2 498 1.03e-81 266
Msa1200070 AT4G34950.1 30.488 574 360 13 53 615 16 561 4.78e-80 264
Msa1200070 AT2G16660.1 30.824 558 342 11 53 606 14 531 2.94e-68 232
Msa1200070 AT1G80530.1 29.412 578 347 20 48 605 8 544 4.54e-50 182
Msa1200070 AT2G16660.2 29.529 403 248 7 53 453 14 382 8.82e-45 164
Msa1200070 AT5G50630.1 25.874 572 364 16 53 613 16 538 3.81e-41 157
Msa1200070 AT5G50520.1 25.874 572 364 16 53 613 16 538 3.81e-41 157
Msa1200070 AT3G01930.2 25.525 619 373 20 32 607 5 578 2.49e-32 132
Msa1200070 AT2G28120.1 24.573 586 387 14 53 619 17 566 3.71e-31 129
Msa1200070 AT5G14120.1 24.960 621 374 20 29 607 3 573 1.09e-29 124
Msa1200070 AT2G39210.1 24.096 581 368 15 53 605 21 556 1.74e-27 117
Msa1200070 AT1G74780.1 25.546 595 337 19 53 612 7 530 1.49e-24 108
Msa1200070 AT1G18940.1 23.077 585 356 18 53 611 9 525 3.45e-22 100
Msa1200070 AT3G01930.3 24.289 457 265 14 32 450 5 418 7.67e-18 87.0
Msa1200070 AT3G01930.1 30.804 224 147 7 386 604 242 462 9.19e-16 80.9
Msa1200070 AT2G34355.2 27.311 238 153 7 380 611 147 370 4.47e-14 74.7
Msa1200070 AT2G34355.1 27.311 238 153 7 380 611 297 520 2.04e-13 73.6
Msa1200070 AT2G34355.1 28.571 196 122 5 53 234 7 198 1.58e-12 70.9
Msa1200070 AT2G34350.1 27.149 221 141 7 399 612 316 523 6.23e-11 65.9
Msa1200070 AT2G34350.2 27.149 221 141 7 399 612 316 523 6.23e-11 65.9

Find 177 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACGCATATTTGGTTCTT+AGG 0.141019 8_1:+52361524 None:intergenic
AAAAGAAAATATAAGGTAAA+TGG 0.172313 8_1:+52360987 None:intergenic
TTAGCTCAATTCTGTAATTT+AGG 0.173622 8_1:-52360924 Msa1200070:three_prime_UTR
CATACTGGAACTGCACTAAT+TGG 0.178376 8_1:-52361835 Msa1200070:CDS
ACAGGTTCAGCTGAATTATT+TGG 0.198808 8_1:-52367146 Msa1200070:CDS
GGGATTCTTCGACGTGATTT+TGG 0.202196 8_1:+52367319 None:intergenic
AAAATGTTCATACGCATATT+TGG 0.223002 8_1:+52361516 None:intergenic
TTTATGGGGTTTCTTGGTTA+TGG 0.244452 8_1:-52367031 Msa1200070:CDS
TTAAAGATCTCCAAAGAATA+TGG 0.254801 8_1:-52361021 Msa1200070:three_prime_UTR
ATCCTCCCGTTGTTTATTCC+TGG 0.257241 8_1:-52363111 Msa1200070:CDS
AATGCAAGTGTTCGGTTAAC+TGG 0.257319 8_1:+52363456 None:intergenic
TTTGGCTACTGCGAATGATA+TGG 0.259524 8_1:-52367128 Msa1200070:CDS
TACTTGTTCCCCATATTCTT+TGG 0.266975 8_1:+52361011 None:intergenic
GCTGCGTTTATGGGGTTTCT+TGG 0.267875 8_1:-52367037 Msa1200070:CDS
TATGTTCATTGCTGCGTTTA+TGG 0.279774 8_1:-52367047 Msa1200070:CDS
GCTACTTCTGGACATTTATC+TGG 0.290729 8_1:-52361594 Msa1200070:CDS
ATGCACATCTGTCGTGGGAC+TGG 0.294070 8_1:-52361566 Msa1200070:CDS
ATGTTCATTGCTGCGTTTAT+GGG 0.297607 8_1:-52367046 Msa1200070:CDS
GGCCTTTATCTCCTCTTGTT+TGG 0.298637 8_1:-52363195 Msa1200070:CDS
CCAATTGGTTCACTTCTCTA+TGG 0.300390 8_1:-52361709 Msa1200070:CDS
TTATGGGGTTTCTTGGTTAT+GGG 0.302178 8_1:-52367030 Msa1200070:CDS
TGATCCTTGTCGTTACGATA+TGG 0.305772 8_1:-52367243 Msa1200070:CDS
GCACTAATTGGGTTGAGTTC+TGG 0.305871 8_1:-52361823 Msa1200070:CDS
ATATGCTGCAGCCACTTAAA+AGG 0.309934 8_1:+52363523 None:intergenic
TTCTTGGTTATGGGGTTCAA+TGG 0.314531 8_1:-52367021 Msa1200070:CDS
TCTTGTCTATAGCAATAATC+TGG 0.318485 8_1:-52362743 Msa1200070:CDS
TCTTATGCATCTTCCTGTTT+CGG 0.328486 8_1:-52367074 Msa1200070:CDS
GTGATTGACACCTACACTAT+TGG 0.333681 8_1:+52361753 None:intergenic
GCATCGTATATGCTCGGGCT+TGG 0.337481 8_1:-52363089 Msa1200070:CDS
TTGTCCGCAGATTAGACTTT+TGG 0.338323 8_1:-52362804 Msa1200070:CDS
TGGGAAGGCAATGCTACTTC+TGG 0.346076 8_1:-52361606 Msa1200070:CDS
AATGAAATTACCAGAAAATA+AGG 0.347014 8_1:+52366971 None:intergenic
GAAGTTCTGCAGCCATGATT+TGG 0.349743 8_1:-52361188 Msa1200070:three_prime_UTR
TCCCTCCTGATGCAGTTAAC+CGG 0.355666 8_1:-52363263 Msa1200070:CDS
TTCGGCCGCTTGCTTTCAGC+TGG 0.355741 8_1:-52362646 Msa1200070:CDS
AGAATGGCGCGTGGTCCTTC+TGG 0.358299 8_1:-52361210 Msa1200070:three_prime_UTR
ATATGGATTCAAGCATTTAC+AGG 0.358707 8_1:-52367226 Msa1200070:CDS
CATTCCAGCTTCCGGGTAGA+AGG 0.361167 8_1:-52363051 Msa1200070:CDS
GTACCATCCATTCCAGCTTC+CGG 0.370296 8_1:-52363059 Msa1200070:CDS
TACCATCCATTCCAGCTTCC+GGG 0.374160 8_1:-52363058 Msa1200070:CDS
TGATTGACACCTACACTATT+GGG 0.378355 8_1:+52361754 None:intergenic
AAAGGCGGTTGGCGAAGAAT+TGG 0.382733 8_1:+52363294 None:intergenic
TCATAAGATGGCAGCATCAT+TGG 0.383463 8_1:+52361093 None:intergenic
AAGTTCTACTTTGCAAGAAC+TGG 0.383683 8_1:-52361934 Msa1200070:CDS
TGTAGCGTTATATCGTAAAT+AGG 0.386816 8_1:-52361364 Msa1200070:three_prime_UTR
TTATGCTTTGACCTTGTTTG+AGG 0.398195 8_1:-52361126 Msa1200070:three_prime_UTR
CATCGTATATGCTCGGGCTT+GGG 0.400293 8_1:-52363088 Msa1200070:CDS
TGACCTTGTTTGAGGCATGC+TGG 0.401606 8_1:-52361118 Msa1200070:three_prime_UTR
GAAACGCGATTATTTAGAAA+AGG 0.402788 8_1:+52367298 None:intergenic
CGCCACAATAGTAGTATTGT+TGG 0.404050 8_1:-52362970 Msa1200070:CDS
AAAGAAAATATAAGGTAAAT+GGG 0.404971 8_1:+52360988 None:intergenic
TGGCTCATCTGCTTCTTCCA+TGG 0.405420 8_1:-52363175 Msa1200070:CDS
TCAGTTACATCTGAACTGTT+TGG 0.405794 8_1:-52361778 Msa1200070:CDS
TGCACATCTGTCGTGGGACT+GGG 0.410614 8_1:-52361565 Msa1200070:CDS
TTGGCTACTGCGAATGATAT+GGG 0.415609 8_1:-52367127 Msa1200070:CDS
TGGCGGGACAATCACGGAAA+TGG 0.415819 8_1:-52367267 Msa1200070:CDS
AGTTCTCTGGCACTGCATAC+TGG 0.416672 8_1:-52361850 Msa1200070:CDS
TAAAGATCTCCAAAGAATAT+GGG 0.418057 8_1:-52361020 Msa1200070:three_prime_UTR
CTCATAACAAATATCCCAAT+TGG 0.420713 8_1:-52361724 Msa1200070:CDS
CTAGCATTGTCAGGTGATCC+TGG 0.421756 8_1:+52362851 None:intergenic
GAGATAAAGGCCAGTGAAGA+TGG 0.425004 8_1:+52363206 None:intergenic
AGCCAAACAAGAGGAGATAA+AGG 0.427912 8_1:+52363193 None:intergenic
TCGCTCACTGTGAGTTTCAA+TGG 0.434947 8_1:-52363432 Msa1200070:CDS
ATGAACATAACAGCCGAAAC+AGG 0.439648 8_1:+52367061 None:intergenic
ATCAAGAGGCGGCGATGATA+AGG 0.440711 8_1:-52361330 Msa1200070:three_prime_UTR
TCAGCCCGGCTCCACTTTGG+TGG 0.442888 8_1:-52363150 Msa1200070:CDS
ATTTGCAGCAAGGGTGTAAA+GGG 0.444742 8_1:+52363398 None:intergenic
CAATAACTTGCGTTGAAATA+CGG 0.445229 8_1:+52361485 None:intergenic
GCTTCAGCCCGGCTCCACTT+TGG 0.445624 8_1:-52363153 Msa1200070:CDS
TTCCTGGCATCGTATATGCT+CGG 0.446310 8_1:-52363095 Msa1200070:CDS
GCAAGCAAGAAGAACGCAAT+TGG 0.452434 8_1:+52361883 None:intergenic
CTCATCAACAACAAAAGTTA+AGG 0.453018 8_1:+52361460 None:intergenic
CAGTTCCACCAAAGTGGAGC+CGG 0.456901 8_1:+52363145 None:intergenic
TAAGTGGCTGCAGCATATGC+TGG 0.457056 8_1:-52363518 Msa1200070:CDS
AACTTCTTAGCCATCTTCAC+TGG 0.457087 8_1:-52363216 Msa1200070:CDS
CTGCTTCTCAACGCCTGTAC+AGG 0.458515 8_1:+52361425 None:intergenic
CCGCTTGCTTTCAGCTGGAC+CGG 0.458672 8_1:-52362641 Msa1200070:CDS
AAACGCGATTATTTAGAAAA+GGG 0.459996 8_1:+52367299 None:intergenic
TCCGACGTTATCAAGTTTCC+CGG 0.462635 8_1:+52361643 None:intergenic
CCATAGAGAAGTGAACCAAT+TGG 0.464693 8_1:+52361709 None:intergenic
GAGTCCCGGTTAACTGCATC+AGG 0.466696 8_1:+52363258 None:intergenic
CATAGAGAAGTGAACCAATT+GGG 0.469088 8_1:+52361710 None:intergenic
GCTCTTCTCCTAGCATTGTC+AGG 0.469934 8_1:+52362842 None:intergenic
CTTCTACCCGGAAGCTGGAA+TGG 0.470439 8_1:+52363052 None:intergenic
ATCATGAATAAGAATAATGC+TGG 0.472558 8_1:+52363026 None:intergenic
TGCCGCATCAGACAGTTCTC+TGG 0.472645 8_1:-52361863 Msa1200070:CDS
TGGTGATTCTTCGAGATTGT+TGG 0.473892 8_1:+52367339 None:intergenic
TTCTGGACATTTATCTGGTG+GGG 0.473994 8_1:-52361589 Msa1200070:CDS
GGAACCTTCTACCCGGAAGC+TGG 0.474322 8_1:+52363047 None:intergenic
TCCTGGCATCGTATATGCTC+GGG 0.483803 8_1:-52363094 Msa1200070:CDS
CTTCTGGACATTTATCTGGT+GGG 0.485263 8_1:-52361590 Msa1200070:CDS
AATTTGCAGCAAGGGTGTAA+AGG 0.488929 8_1:+52363397 None:intergenic
GAATAAACAACGGGAGGATG+AGG 0.497488 8_1:+52363115 None:intergenic
AGATACAACGAGTCAGATGA+TGG 0.502108 8_1:+52363366 None:intergenic
AGTATTGTTGGCAATGGAGA+TGG 0.503210 8_1:-52362958 Msa1200070:CDS
TTCCCGGTGTTGAGTGTGCA+TGG 0.503991 8_1:+52361659 None:intergenic
AGGAGAAGAGCACTCGGCTG+CGG 0.506141 8_1:-52362830 Msa1200070:CDS
TGCATAATCGAACCAAATCA+TGG 0.507552 8_1:+52361176 None:intergenic
CGATGCCAGGAATAAACAAC+GGG 0.520412 8_1:+52363106 None:intergenic
CTTCTTCCATGGCTTCAGCC+CGG 0.520545 8_1:-52363164 Msa1200070:CDS
ATAGTGATGTGTGTTGTGAT+AGG 0.521727 8_1:-52362882 Msa1200070:CDS
TACTTCTGTGGAGGTACGAT+TGG 0.521989 8_1:-52362766 Msa1200070:CDS
GTCTATTGAATTTGCAGCAA+GGG 0.523964 8_1:+52363389 None:intergenic
ATACTGGAACTGCACTAATT+GGG 0.526084 8_1:-52361834 Msa1200070:CDS
ACTTCTGGACATTTATCTGG+TGG 0.526256 8_1:-52361591 Msa1200070:CDS
CAGGATCACCTGACAATGCT+AGG 0.526682 8_1:-52362850 Msa1200070:CDS
CCCTCCTGATGCAGTTAACC+GGG 0.528546 8_1:-52363262 Msa1200070:CDS
GTGGGGATGCACATCTGTCG+TGG 0.528762 8_1:-52361572 Msa1200070:CDS
ATCTGCTCTTCAAATCTCAC+AGG 0.528765 8_1:-52367164 Msa1200070:CDS
AATAGTAGTATTGTTGGCAA+TGG 0.537309 8_1:-52362964 Msa1200070:CDS
GTGGAGCCGGGCTGAAGCCA+TGG 0.539100 8_1:+52363158 None:intergenic
AGTTCCACCAAAGTGGAGCC+GGG 0.542463 8_1:+52363146 None:intergenic
TTGTGATAGGATGATTGGCC+AGG 0.544085 8_1:-52362869 Msa1200070:CDS
GGACAGATTGCTCAATCTCT+CGG 0.544880 8_1:-52362721 Msa1200070:CDS
GTGTGTTGTGATAGGATGAT+TGG 0.550219 8_1:-52362874 Msa1200070:CDS
TTCCTTCTGACTTGAAAACA+TGG 0.551570 8_1:+52362909 None:intergenic
TACCCGGAAGCTGGAATGGA+TGG 0.554919 8_1:+52363056 None:intergenic
CTTGTCTATAGCAATAATCT+GGG 0.555565 8_1:-52362742 Msa1200070:CDS
AAATATACACAATCATAAGA+TGG 0.558420 8_1:+52361081 None:intergenic
GCCCATGCACACTCAACACC+GGG 0.561814 8_1:-52361661 Msa1200070:CDS
GTCGGACTCAGTAGTTTGCA+TGG 0.564468 8_1:-52361626 Msa1200070:CDS
AAGCAGATGAGCCAAACAAG+AGG 0.564685 8_1:+52363184 None:intergenic
TATGGGGTTTCTTGGTTATG+GGG 0.565719 8_1:-52367029 Msa1200070:CDS
TATGCAGCAATAATACAGAA+TGG 0.567827 8_1:-52361226 Msa1200070:three_prime_UTR
AAGAAGAACGCAATTGGTGT+TGG 0.570043 8_1:+52361889 None:intergenic
TGTTCATTGCTGCGTTTATG+GGG 0.570743 8_1:-52367045 Msa1200070:CDS
TGCCCATGCACACTCAACAC+CGG 0.571695 8_1:-52361662 Msa1200070:CDS
TCCCGGTGTTGAGTGTGCAT+GGG 0.574719 8_1:+52361660 None:intergenic
TCTACTTTGCAAGAACTGGT+TGG 0.579133 8_1:-52361930 Msa1200070:CDS
GACATGATGATCACCTGTAC+AGG 0.580447 8_1:-52361438 Msa1200070:three_prime_UTR
TGAGCGATAATGCAAGTGTT+CGG 0.581196 8_1:+52363448 None:intergenic
TGCCAACAATACTACTATTG+TGG 0.582099 8_1:+52362968 None:intergenic
AGCCACTTAAAAGGCTCAGA+AGG 0.583900 8_1:+52363532 None:intergenic
ACTTACCTACGAACATAGTC+CGG 0.585793 8_1:+52362622 None:intergenic
TGGGGATGCACATCTGTCGT+GGG 0.587963 8_1:-52361571 Msa1200070:CDS
TCAGGAGGGAGAGGTTCTAA+AGG 0.592174 8_1:+52363276 None:intergenic
GAAGAACAGTTCCACCAAAG+TGG 0.593406 8_1:+52363139 None:intergenic
AGGAAGAGTTAGATATCAAG+AGG 0.598946 8_1:-52361344 Msa1200070:three_prime_UTR
ACTCAGTAGTTTGCATGGGA+AGG 0.599176 8_1:-52361621 Msa1200070:CDS
TTAACTGCATCAGGAGGGAG+AGG 0.602857 8_1:+52363267 None:intergenic
TACTACATCACATACTTCTG+TGG 0.603312 8_1:-52362778 Msa1200070:CDS
GGAGAGGTTCTAAAGGCGGT+TGG 0.603669 8_1:+52363283 None:intergenic
AAAGATCTCCAAAGAATATG+GGG 0.611675 8_1:-52361019 Msa1200070:three_prime_UTR
TCCCGGTTAACTGCATCAGG+AGG 0.613519 8_1:+52363261 None:intergenic
GATCCAGCATGCCTCAAACA+AGG 0.613943 8_1:+52361115 None:intergenic
CAACAATACTACTATTGTGG+CGG 0.618920 8_1:+52362971 None:intergenic
CGGTTGGCGAAGAATTGGAA+TGG 0.622452 8_1:+52363299 None:intergenic
TGGTGTTGGTATAAGTGCAA+TGG 0.624502 8_1:+52361903 None:intergenic
TCGGACTCAGTAGTTTGCAT+GGG 0.626546 8_1:-52361625 Msa1200070:CDS
TACATCACATACTTCTGTGG+AGG 0.634418 8_1:-52362775 Msa1200070:CDS
TGCCAGAGAACTGTCTGATG+CGG 0.634736 8_1:+52361861 None:intergenic
GGATGCGTAGAGAGTAACAA+GGG 0.636706 8_1:+52362678 None:intergenic
CCCGGTTAACTGCATCAGGA+GGG 0.640329 8_1:+52363262 None:intergenic
TTAGAAATACTAGTGAGTCC+CGG 0.641069 8_1:+52363244 None:intergenic
CCGGTCCAGCTGAAAGCAAG+CGG 0.646338 8_1:+52362641 None:intergenic
TGCCAGGAATAAACAACGGG+AGG 0.653102 8_1:+52363109 None:intergenic
TGGCTACTGCGAATGATATG+GGG 0.654474 8_1:-52367126 Msa1200070:CDS
TACAGTCTGCTAAGTGACAA+CGG 0.654544 8_1:-52362934 Msa1200070:CDS
TTTCTATCGTTGTCTCTGCG+TGG 0.656851 8_1:+52367400 None:intergenic
TAATGCTGGAACCTTCTACC+CGG 0.658008 8_1:+52363040 None:intergenic
CTGGACCGGACTATGTTCGT+AGG 0.661692 8_1:-52362627 Msa1200070:intron
AATGCTAGGAGAAGAGCACT+CGG 0.664079 8_1:-52362836 Msa1200070:CDS
GGTCTATTGAATTTGCAGCA+AGG 0.670145 8_1:+52363388 None:intergenic
GATACAACGAGTCAGATGAT+GGG 0.670491 8_1:+52363367 None:intergenic
GGAGGGAGAGGTTCTAAAGG+CGG 0.680038 8_1:+52363279 None:intergenic
TAACTTGCGTTGAAATACGG+TGG 0.680153 8_1:+52361488 None:intergenic
CAATAATACAGAATGGCGCG+TGG 0.680363 8_1:-52361219 Msa1200070:three_prime_UTR
ATGGCTGCAGAACTTCCAGA+AGG 0.682600 8_1:+52361195 None:intergenic
AAGAGTTAGATATCAAGAGG+CGG 0.683061 8_1:-52361341 Msa1200070:three_prime_UTR
CTGTTTGGACCCAATAGTGT+AGG 0.683478 8_1:-52361763 Msa1200070:CDS
ATAGCCAAAAGTCTAATCTG+CGG 0.685024 8_1:+52362800 None:intergenic
AGATGTAACTGAAACAGCAG+CGG 0.694331 8_1:+52361789 None:intergenic
ACGATGCCAGGAATAAACAA+CGG 0.695028 8_1:+52363105 None:intergenic
ACCGGGAAACTTGATAACGT+CGG 0.701749 8_1:-52361644 Msa1200070:CDS
GAATCCATATCGTAACGACA+AGG 0.707670 8_1:+52367239 None:intergenic
AGGATGCGTAGAGAGTAACA+AGG 0.751781 8_1:+52362677 None:intergenic
GAGTTTCAATGGTGTCAGTG+CGG 0.765466 8_1:-52363421 Msa1200070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTAGTTTTAATTAAAG+TGG - chr8_1:52361825-52361844 Msa1200070:CDS 10.0%
!!! TAATATAGAAAAAAATGTTT+TGG - chr8_1:52361955-52361974 Msa1200070:intron 10.0%
!!! TAATTGTAATTTTGTTTTTA+TGG + chr8_1:52362101-52362120 None:intergenic 10.0%
!!! AAATAAAAACTGAATTTTTT+TGG - chr8_1:52362259-52362278 Msa1200070:intron 10.0%
!!! AATTGTTTTTTATTTTTAAG+AGG - chr8_1:52362287-52362306 Msa1200070:intron 10.0%
!!! AAATAAAAACTGATTTTTTT+TGG - chr8_1:52362356-52362375 Msa1200070:intron 10.0%
!! AATATTTATCATTAAAACAA+CGG - chr8_1:52362836-52362855 Msa1200070:CDS 10.0%
!!! AAGTTATTACTATTTTTATA+AGG - chr8_1:52363197-52363216 Msa1200070:CDS 10.0%
!! TGATTACTATTATAAAATAA+GGG + chr8_1:52363565-52363584 None:intergenic 10.0%
!! TTGATTACTATTATAAAATA+AGG + chr8_1:52363566-52363585 None:intergenic 10.0%
!!! TTCCTTTTTAAAATAATATA+TGG - chr8_1:52363683-52363702 Msa1200070:intron 10.0%
!!! TTCCATATATTATTTTAAAA+AGG + chr8_1:52363688-52363707 None:intergenic 10.0%
!!! TTTTAAAATAATATATGGAA+TGG - chr8_1:52363688-52363707 Msa1200070:intron 10.0%
!! AAATTTCGAAAAAAATAAAT+TGG + chr8_1:52364176-52364195 None:intergenic 10.0%
!!! TATTTAATATAGTTCTAAAA+TGG + chr8_1:52365845-52365864 None:intergenic 10.0%
!! ACTATTTATCTAAAAAATCT+CGG - chr8_1:52361584-52361603 Msa1200070:CDS 15.0%
!!! TTTTAATTAAAGTGGATTTT+AGG - chr8_1:52361833-52361852 Msa1200070:CDS 15.0%
!! ATCAAAAGTTTAATACAAAT+CGG - chr8_1:52362049-52362068 Msa1200070:intron 15.0%
!!! GATAGTTGTTTTTTATTTTT+AGG - chr8_1:52362187-52362206 Msa1200070:intron 15.0%
!! ATATTTATCATTAAAACAAC+GGG - chr8_1:52362837-52362856 Msa1200070:CDS 15.0%
!!! TAATAACTTATGCTTTTTAA+AGG + chr8_1:52363022-52363041 None:intergenic 15.0%
!!! GTTATTACACTATTTTTATA+AGG - chr8_1:52363035-52363054 Msa1200070:CDS 15.0%
!! TTTGTAGATATTGAAAAATA+CGG - chr8_1:52363746-52363765 Msa1200070:intron 15.0%
!!! TCGAAATTTTTCTTATAAAT+AGG - chr8_1:52364187-52364206 Msa1200070:intron 15.0%
!!! AGTGATTTTGTAATTATATT+TGG - chr8_1:52364553-52364572 Msa1200070:intron 15.0%
!! AGTACAAATAAACAATTTAA+AGG + chr8_1:52365651-52365670 None:intergenic 15.0%
!! AAAAGAAAAATAAAGAAAAG+TGG - chr8_1:52366970-52366989 Msa1200070:intron 15.0%
!! AAAGAAAATATAAGGTAAAT+GGG + chr8_1:52367252-52367271 None:intergenic 15.0%
!! AAAAGAAAATATAAGGTAAA+TGG + chr8_1:52367253-52367272 None:intergenic 15.0%
!! AATGAAATTACCAGAAAATA+AGG + chr8_1:52361269-52361288 None:intergenic 20.0%
!!! GCTTTATTAACTCTTAATTA+TGG - chr8_1:52361377-52361396 Msa1200070:three_prime_UTR 20.0%
!!! ACTAACAATTTTGAAATTGT+CGG + chr8_1:52361541-52361560 None:intergenic 20.0%
!!! CATGTGTTTTTTTTTTTGTT+GGG - chr8_1:52361786-52361805 Msa1200070:CDS 20.0%
!!! TTCTCCAACTTTTTTTTTTT+TGG + chr8_1:52361900-52361919 None:intergenic 20.0%
!!! TCTCTCTAAAAAAAGAATTT+TGG - chr8_1:52361979-52361998 Msa1200070:intron 20.0%
!!! AAAATGTATTTTCTACTTTC+TGG + chr8_1:52362124-52362143 None:intergenic 20.0%
!!! AGTTGTTTTTTATTTTTAGG+AGG - chr8_1:52362190-52362209 Msa1200070:intron 20.0%
!! TAAGTAAAGAAAAGAAAAAG+TGG + chr8_1:52362535-52362554 None:intergenic 20.0%
!!! TTTTAACCGACATTATTATA+AGG + chr8_1:52362662-52362681 None:intergenic 20.0%
!!! TTTATGATTTTGTAAGAGAT+AGG + chr8_1:52363170-52363189 None:intergenic 20.0%
!! TAGTCAATGTATAATTACAA+AGG + chr8_1:52363385-52363404 None:intergenic 20.0%
!! AAAATGAGATATATTAACAC+CGG + chr8_1:52363464-52363483 None:intergenic 20.0%
!! TAAATAACCAATATACATCT+AGG + chr8_1:52363613-52363632 None:intergenic 20.0%
!!! GTATATTGGTTATTTATTCA+TGG - chr8_1:52363617-52363636 Msa1200070:intron 20.0%
!! ATTCCTTAATTAATCATTAG+TGG - chr8_1:52363646-52363665 Msa1200070:intron 20.0%
!! TTACCACTAATGATTAATTA+AGG + chr8_1:52363652-52363671 None:intergenic 20.0%
!!! TCAATCAAACAAATTTTACT+TGG - chr8_1:52363890-52363909 Msa1200070:intron 20.0%
!!! TATCTTTTTATAATAAGGAC+AGG + chr8_1:52363954-52363973 None:intergenic 20.0%
!! AAAAAGACAAACATTAAATG+AGG - chr8_1:52364086-52364105 Msa1200070:intron 20.0%
!! AAAAGACAAACATTAAATGA+GGG - chr8_1:52364087-52364106 Msa1200070:intron 20.0%
!!! ATTTTTCTTATAAATAGGAC+CGG - chr8_1:52364192-52364211 Msa1200070:intron 20.0%
!! GAACTATATTAAATAGTTTG+AGG - chr8_1:52365850-52365869 Msa1200070:intron 20.0%
!! TTATGTTAATGTTATGTTAC+TGG + chr8_1:52366096-52366115 None:intergenic 20.0%
!! ACTTATGATTAAACTATCTT+TGG - chr8_1:52366271-52366290 Msa1200070:intron 20.0%
!! AAATATACACAATCATAAGA+TGG + chr8_1:52367159-52367178 None:intergenic 20.0%
!! CAGAAGAAAAAGAAAATATA+AGG + chr8_1:52367260-52367279 None:intergenic 20.0%
! AAACGCGATTATTTAGAAAA+GGG + chr8_1:52360941-52360960 None:intergenic 25.0%
! ATGGAAAGAAAAGAAAAAAG+AGG + chr8_1:52361297-52361316 None:intergenic 25.0%
! TTCATCAATAATGCAGAAAA+TGG + chr8_1:52361316-52361335 None:intergenic 25.0%
! ATTTGAAAATGTAGTAATCC+AGG + chr8_1:52361457-52361476 None:intergenic 25.0%
! GTTAGTTGAACAATTTAACT+CGG - chr8_1:52361555-52361574 Msa1200070:CDS 25.0%
! TTAGTTGAACAATTTAACTC+GGG - chr8_1:52361556-52361575 Msa1200070:CDS 25.0%
! ACATTGTTAGATTGAAAAAC+CGG - chr8_1:52361755-52361774 Msa1200070:CDS 25.0%
! AAAAAAAAACACATGGAAAG+TGG + chr8_1:52361781-52361800 None:intergenic 25.0%
! CCAACAAAAAAAAAAACACA+TGG + chr8_1:52361788-52361807 None:intergenic 25.0%
!!! CCATGTGTTTTTTTTTTTGT+TGG - chr8_1:52361785-52361804 Msa1200070:CDS 25.0%
!!! ACTTTTTTTTTTTTGGTGTC+CGG + chr8_1:52361893-52361912 None:intergenic 25.0%
! GACACCAAAAAAAAAAAAGT+TGG - chr8_1:52361893-52361912 Msa1200070:CDS 25.0%
! ATATTTGTGATAGAGAGAAA+GGG + chr8_1:52362161-52362180 None:intergenic 25.0%
! AATATTTGTGATAGAGAGAA+AGG + chr8_1:52362162-52362181 None:intergenic 25.0%
! AGAGGTTTATTAAAAACTGT+TGG - chr8_1:52362305-52362324 Msa1200070:intron 25.0%
!!! GTCAAGTTTACTTGTTTTTA+AGG - chr8_1:52362401-52362420 Msa1200070:intron 25.0%
! TGGACTTTAGTGTTAAAATA+TGG + chr8_1:52362571-52362590 None:intergenic 25.0%
!!! GGTGTTGATATAAAACTAAT+TGG - chr8_1:52362754-52362773 Msa1200070:CDS 25.0%
! CAAAAGTAATATGTTTGCAT+TGG + chr8_1:52363111-52363130 None:intergenic 25.0%
!!! ATTACTTTTGTTACATATGC+AGG - chr8_1:52363121-52363140 Msa1200070:CDS 25.0%
!!! TTTTTCTAAAAAGTCGATCA+TGG + chr8_1:52363250-52363269 None:intergenic 25.0%
!!! CACAATGCAAATTTTGTTTA+TGG - chr8_1:52363305-52363324 Msa1200070:CDS 25.0%
! AATGTATAATTACAAAGGAG+AGG + chr8_1:52363380-52363399 None:intergenic 25.0%
!! ATTGACTATTTGTTCCTTTT+GGG - chr8_1:52363397-52363416 Msa1200070:CDS 25.0%
! TTCAATATCTACAAAATCAG+CGG + chr8_1:52363741-52363760 None:intergenic 25.0%
!! TTTTTATAATAAGGACAGGA+GGG + chr8_1:52363950-52363969 None:intergenic 25.0%
! CTAACTTATATGAGATATTC+CGG + chr8_1:52364214-52364233 None:intergenic 25.0%
! TATAAGTTAGAAGCTTTACA+TGG - chr8_1:52364224-52364243 Msa1200070:intron 25.0%
! ACTTTCTATATGTGTATGTT+TGG + chr8_1:52364369-52364388 None:intergenic 25.0%
! ACCTACAAACTATAAAGAAT+TGG - chr8_1:52364406-52364425 Msa1200070:intron 25.0%
!! TCCAATTCTTTATAGTTTGT+AGG + chr8_1:52364410-52364429 None:intergenic 25.0%
! ATATACAGCATATATTTCCA+GGG + chr8_1:52364479-52364498 None:intergenic 25.0%
! TATATACAGCATATATTTCC+AGG + chr8_1:52364480-52364499 None:intergenic 25.0%
! TTGTAATTATATTTGGTCAG+TGG - chr8_1:52364560-52364579 Msa1200070:intron 25.0%
! TATCAGCATATTACAATTCA+TGG + chr8_1:52364633-52364652 None:intergenic 25.0%
!!! TACTTGCTATGAATTCTTAT+TGG - chr8_1:52364674-52364693 Msa1200070:intron 25.0%
!!! TATGTTTTATTCTCTGCATT+AGG - chr8_1:52364752-52364771 Msa1200070:intron 25.0%
! ATCATGAATAAGAATAATGC+TGG + chr8_1:52365214-52365233 None:intergenic 25.0%
! TAAACAATTTAAAGGACTTC+AGG + chr8_1:52365643-52365662 None:intergenic 25.0%
!!! TAAGTTTTTTTTTCCCACAT+TGG - chr8_1:52365683-52365702 Msa1200070:intron 25.0%
! AGAATTACGTTGAACTATTT+GGG + chr8_1:52365996-52366015 None:intergenic 25.0%
! TAGAATTACGTTGAACTATT+TGG + chr8_1:52365997-52366016 None:intergenic 25.0%
!! AGTTCAACGTAATTCTAAAA+TGG - chr8_1:52366000-52366019 Msa1200070:intron 25.0%
!!! GTTCAACGTAATTCTAAAAT+GGG - chr8_1:52366001-52366020 Msa1200070:intron 25.0%
! TCATTTCTAATTCAAGACAA+AGG + chr8_1:52366229-52366248 None:intergenic 25.0%
! AAAATGTTCATACGCATATT+TGG + chr8_1:52366724-52366743 None:intergenic 25.0%
!!! CAGAAAGATATTTTTCAACA+AGG - chr8_1:52367179-52367198 Msa1200070:CDS 25.0%
! TTAAAGATCTCCAAAGAATA+TGG - chr8_1:52367216-52367235 Msa1200070:CDS 25.0%
! TAAAGATCTCCAAAGAATAT+GGG - chr8_1:52367217-52367236 Msa1200070:CDS 25.0%
! TTAGCTCAATTCTGTAATTT+AGG - chr8_1:52367313-52367332 Msa1200070:CDS 25.0%
!!! TTCTGTTTTCACCATTTTTT+GGG + chr8_1:52367354-52367373 None:intergenic 25.0%
GAAACGCGATTATTTAGAAA+AGG + chr8_1:52360942-52360961 None:intergenic 30.0%
ATATGGATTCAAGCATTTAC+AGG - chr8_1:52361011-52361030 Msa1200070:three_prime_UTR 30.0%
! AATGATATGGGGAAGATTTT+CGG - chr8_1:52361122-52361141 Msa1200070:three_prime_UTR 30.0%
!!! CATTTCTTTGCCTTATTTTC+TGG - chr8_1:52361256-52361275 Msa1200070:three_prime_UTR 30.0%
AACTCAAAACATCTACAATG+TGG - chr8_1:52361612-52361631 Msa1200070:CDS 30.0%
ATCTACAATGTGGTTATATG+AGG - chr8_1:52361622-52361641 Msa1200070:CDS 30.0%
TCATAAACATCTACCATGTA+TGG - chr8_1:52361680-52361699 Msa1200070:CDS 30.0%
TATAACCATGTAACCATACA+TGG + chr8_1:52361696-52361715 None:intergenic 30.0%
!!! CTTTTTTTTTTTTGGTGTCC+GGG + chr8_1:52361892-52361911 None:intergenic 30.0%
GGAGGTTTATTAAAAACTGT+TGG - chr8_1:52362208-52362227 Msa1200070:intron 30.0%
! ATCGACTTTGTAAATTGAGT+TGG + chr8_1:52362591-52362610 None:intergenic 30.0%
GTCGATATTGTTATACTTGA+CGG - chr8_1:52362605-52362624 Msa1200070:intron 30.0%
! TGACGGTTGACATTTTTATA+TGG - chr8_1:52362622-52362641 Msa1200070:intron 30.0%
CCGACATTATTATAAGGTTT+CGG + chr8_1:52362656-52362675 None:intergenic 30.0%
CCGAAACCTTATAATAATGT+CGG - chr8_1:52362653-52362672 Msa1200070:CDS 30.0%
! ATGTCGGTTAAAATACTACT+CGG - chr8_1:52362669-52362688 Msa1200070:CDS 30.0%
GTTAAATATCATTCTCTCTC+TGG - chr8_1:52363270-52363289 Msa1200070:CDS 30.0%
TTGTTTATGGCAATCATAAC+TGG - chr8_1:52363318-52363337 Msa1200070:CDS 30.0%
!! CATTGACTATTTGTTCCTTT+TGG - chr8_1:52363396-52363415 Msa1200070:CDS 30.0%
! TTGACTATTTGTTCCTTTTG+GGG - chr8_1:52363398-52363417 Msa1200070:CDS 30.0%
! ATATACATCTAGGTTTTCTC+TGG + chr8_1:52363603-52363622 None:intergenic 30.0%
GAGAAAACCTAGATGTATAT+TGG - chr8_1:52363603-52363622 Msa1200070:intron 30.0%
! CTTTTTATAATAAGGACAGG+AGG + chr8_1:52363951-52363970 None:intergenic 30.0%
! TAATTTGTGAAGCTGCAATT+CGG - chr8_1:52364295-52364314 Msa1200070:intron 30.0%
ATAAAAGTTCTTTAGCTGAG+AGG - chr8_1:52364504-52364523 Msa1200070:intron 30.0%
AATAGTAGTATTGTTGGCAA+TGG - chr8_1:52365273-52365292 Msa1200070:intron 30.0%
TCTTGTCTATAGCAATAATC+TGG - chr8_1:52365494-52365513 Msa1200070:intron 30.0%
CTTGTCTATAGCAATAATCT+GGG - chr8_1:52365495-52365514 Msa1200070:intron 30.0%
GAATTACGTTGAACTATTTG+GGG + chr8_1:52365995-52366014 None:intergenic 30.0%
GAATGTGTGAAAAAGGATAA+CGG - chr8_1:52366130-52366149 Msa1200070:intron 30.0%
CTCATAACAAATATCCCAAT+TGG - chr8_1:52366513-52366532 Msa1200070:intron 30.0%
! CAATAACTTGCGTTGAAATA+CGG + chr8_1:52366755-52366774 None:intergenic 30.0%
CTCATCAACAACAAAAGTTA+AGG + chr8_1:52366780-52366799 None:intergenic 30.0%
TGTAGCGTTATATCGTAAAT+AGG - chr8_1:52366873-52366892 Msa1200070:intron 30.0%
TATGCAGCAATAATACAGAA+TGG - chr8_1:52367011-52367030 Msa1200070:CDS 30.0%
AAAGATCTCCAAAGAATATG+GGG - chr8_1:52367218-52367237 Msa1200070:CDS 30.0%
!!! TCTGTTTTCACCATTTTTTG+GGG + chr8_1:52367353-52367372 None:intergenic 30.0%
!! GTTCTGTTTTCACCATTTTT+TGG + chr8_1:52367355-52367374 None:intergenic 30.0%
!! TAATCGCGTTTCGCTTTTAA+TGG - chr8_1:52360950-52360969 Msa1200070:three_prime_UTR 35.0%
ACAGGTTCAGCTGAATTATT+TGG - chr8_1:52361091-52361110 Msa1200070:three_prime_UTR 35.0%
TCTTATGCATCTTCCTGTTT+CGG - chr8_1:52361163-52361182 Msa1200070:three_prime_UTR 35.0%
TATGTTCATTGCTGCGTTTA+TGG - chr8_1:52361190-52361209 Msa1200070:three_prime_UTR 35.0%
ATGTTCATTGCTGCGTTTAT+GGG - chr8_1:52361191-52361210 Msa1200070:three_prime_UTR 35.0%
TTTATGGGGTTTCTTGGTTA+TGG - chr8_1:52361206-52361225 Msa1200070:three_prime_UTR 35.0%
TTATGGGGTTTCTTGGTTAT+GGG - chr8_1:52361207-52361226 Msa1200070:three_prime_UTR 35.0%
ATCTACCATGTATGGTTACA+TGG - chr8_1:52361688-52361707 Msa1200070:CDS 35.0%
!! AGAATTTTGGCAAGAGTGAT+CGG - chr8_1:52361992-52362011 Msa1200070:intron 35.0%
!!! GTGGAGAAGTGTTTTATCTT+GGG - chr8_1:52362014-52362033 Msa1200070:intron 35.0%
AAAATATTTCGCGAGAGAGT+AGG + chr8_1:52362431-52362450 None:intergenic 35.0%
!! TCTCTCGCGAAATATTTTAG+CGG - chr8_1:52362433-52362452 Msa1200070:intron 35.0%
!!! TGTTTGTTGTCTGGTTTTGA+TGG - chr8_1:52362459-52362478 Msa1200070:intron 35.0%
CTCATTCCTTGTACTATTTG+TGG - chr8_1:52362488-52362507 Msa1200070:intron 35.0%
ATTGGACCACAAATAGTACA+AGG + chr8_1:52362497-52362516 None:intergenic 35.0%
TTTGTGGTCCAATTCCAAAA+TGG - chr8_1:52362504-52362523 Msa1200070:intron 35.0%
! TGTCGGTTAAAATACTACTC+GGG - chr8_1:52362670-52362689 Msa1200070:CDS 35.0%
GGAATGTTAAAGAATGCCTT+GGG - chr8_1:52362858-52362877 Msa1200070:CDS 35.0%
! ATCTTTTAACCAATGTCCCA+AGG + chr8_1:52362877-52362896 None:intergenic 35.0%
TTATGCTAATAAGTGCCCTT+AGG + chr8_1:52362999-52363018 None:intergenic 35.0%
ATAGGCTAACAAATGCACTT+AGG + chr8_1:52363152-52363171 None:intergenic 35.0%
AAATATCATTCTCTCTCTGG+TGG - chr8_1:52363273-52363292 Msa1200070:CDS 35.0%
TTTATGGCAATCATAACTGG+TGG - chr8_1:52363321-52363340 Msa1200070:CDS 35.0%
TCGAACCCATTATTGTGTTT+GGG - chr8_1:52363344-52363363 Msa1200070:CDS 35.0%
CGATACCCAAACACAATAAT+GGG + chr8_1:52363352-52363371 None:intergenic 35.0%
TCGATACCCAAACACAATAA+TGG + chr8_1:52363353-52363372 None:intergenic 35.0%
AGATATATTAACACCGGCAA+TGG + chr8_1:52363458-52363477 None:intergenic 35.0%
AATCAGCGGAAAATACACTT+AGG + chr8_1:52363727-52363746 None:intergenic 35.0%
CACATTGATCAGATCTCAAA+AGG + chr8_1:52363818-52363837 None:intergenic 35.0%
TTGAATGTGTTGCAAAAGAG+TGG - chr8_1:52363838-52363857 Msa1200070:intron 35.0%
GCAGTAACTAATGATTGTCT+TGG + chr8_1:52363995-52364014 None:intergenic 35.0%
TTGCAGCTTCACAAATTATG+CGG + chr8_1:52364293-52364312 None:intergenic 35.0%
!! GTTGTGAAATTTTGGTGACA+CGG + chr8_1:52364339-52364358 None:intergenic 35.0%
! TATGTGTATGTTTGGTTCAG+CGG + chr8_1:52364361-52364380 None:intergenic 35.0%
CATAGCAAGTAAATCAGTCT+TGG + chr8_1:52364665-52364684 None:intergenic 35.0%
TGCTATGAATTCTTATTGGC+AGG - chr8_1:52364678-52364697 Msa1200070:intron 35.0%
GTCTATTGAATTTGCAGCAA+GGG + chr8_1:52364851-52364870 None:intergenic 35.0%
TTAGAAATACTAGTGAGTCC+CGG + chr8_1:52364996-52365015 None:intergenic 35.0%
CAACAATACTACTATTGTGG+CGG + chr8_1:52365269-52365288 None:intergenic 35.0%
TGCCAACAATACTACTATTG+TGG + chr8_1:52365272-52365291 None:intergenic 35.0%
!!! ATCCATGTTTTCAAGTCAGA+AGG - chr8_1:52365326-52365345 Msa1200070:intron 35.0%
! TTCCTTCTGACTTGAAAACA+TGG + chr8_1:52365331-52365350 None:intergenic 35.0%
ATAGTGATGTGTGTTGTGAT+AGG - chr8_1:52365355-52365374 Msa1200070:intron 35.0%
ATAGCCAAAAGTCTAATCTG+CGG + chr8_1:52365440-52365459 None:intergenic 35.0%
TACTACATCACATACTTCTG+TGG - chr8_1:52365459-52365478 Msa1200070:intron 35.0%
!! TACGCATCCTTTTCGTTTTT+CGG - chr8_1:52365573-52365592 Msa1200070:intron 35.0%
! AAAAAGGATAGTGGTGCATA+CGG + chr8_1:52365725-52365744 None:intergenic 35.0%
AAGAGATACTTGAACCAGAT+TGG + chr8_1:52365820-52365839 None:intergenic 35.0%
ATAATTGGCGTAAATGCCAT+GGG + chr8_1:52365949-52365968 None:intergenic 35.0%
AATAATTGGCGTAAATGCCA+TGG + chr8_1:52365950-52365969 None:intergenic 35.0%
GCTCAAGAGAGAAGAATAAT+TGG + chr8_1:52365964-52365983 None:intergenic 35.0%
TAACACATTGGAGATAACAG+AGG - chr8_1:52366030-52366049 Msa1200070:intron 35.0%
AACACATTGGAGATAACAGA+GGG - chr8_1:52366031-52366050 Msa1200070:intron 35.0%
TGTGACAGAATGTGTGAAAA+AGG - chr8_1:52366123-52366142 Msa1200070:intron 35.0%
GTGTACGTAATGAGACTTAA+AGG - chr8_1:52366152-52366171 Msa1200070:intron 35.0%
TAATTCAAGACAAAGGCAAG+AGG + chr8_1:52366222-52366241 None:intergenic 35.0%
AAGTTCTACTTTGCAAGAAC+TGG - chr8_1:52366303-52366322 Msa1200070:intron 35.0%
ATACTGGAACTGCACTAATT+GGG - chr8_1:52366403-52366422 Msa1200070:intron 35.0%
TCAGTTACATCTGAACTGTT+TGG - chr8_1:52366459-52366478 Msa1200070:intron 35.0%
TGATTGACACCTACACTATT+GGG + chr8_1:52366486-52366505 None:intergenic 35.0%
CATAGAGAAGTGAACCAATT+GGG + chr8_1:52366530-52366549 None:intergenic 35.0%
!! CATACGCATATTTGGTTCTT+AGG + chr8_1:52366716-52366735 None:intergenic 35.0%
AGGAAGAGTTAGATATCAAG+AGG - chr8_1:52366893-52366912 Msa1200070:intron 35.0%
AAGAGTTAGATATCAAGAGG+CGG - chr8_1:52366896-52366915 Msa1200070:intron 35.0%
TGCATAATCGAACCAAATCA+TGG + chr8_1:52367064-52367083 None:intergenic 35.0%
! TTATGCTTTGACCTTGTTTG+AGG - chr8_1:52367111-52367130 Msa1200070:CDS 35.0%
TACTTGTTCCCCATATTCTT+TGG + chr8_1:52367229-52367248 None:intergenic 35.0%
!!! CTGTTTTCACCATTTTTTGG+GGG + chr8_1:52367352-52367371 None:intergenic 35.0%
TGGTGATTCTTCGAGATTGT+TGG + chr8_1:52360901-52360920 None:intergenic 40.0%
!! TTTTAATGGCGGGACAATCA+CGG - chr8_1:52360964-52360983 Msa1200070:three_prime_UTR 40.0%
TGATCCTTGTCGTTACGATA+TGG - chr8_1:52360994-52361013 Msa1200070:three_prime_UTR 40.0%
GAATCCATATCGTAACGACA+AGG + chr8_1:52361001-52361020 None:intergenic 40.0%
ATCTGCTCTTCAAATCTCAC+AGG - chr8_1:52361073-52361092 Msa1200070:three_prime_UTR 40.0%
TTTGGCTACTGCGAATGATA+TGG - chr8_1:52361109-52361128 Msa1200070:three_prime_UTR 40.0%
TTGGCTACTGCGAATGATAT+GGG - chr8_1:52361110-52361129 Msa1200070:three_prime_UTR 40.0%
! ATATGGGGAAGATTTTCGGT+TGG - chr8_1:52361126-52361145 Msa1200070:three_prime_UTR 40.0%
!!! AAGATTTTCGGTTGGTCTTC+TGG - chr8_1:52361134-52361153 Msa1200070:three_prime_UTR 40.0%
ATGAACATAACAGCCGAAAC+AGG + chr8_1:52361179-52361198 None:intergenic 40.0%
TGTTCATTGCTGCGTTTATG+GGG - chr8_1:52361192-52361211 Msa1200070:three_prime_UTR 40.0%
TATGGGGTTTCTTGGTTATG+GGG - chr8_1:52361208-52361227 Msa1200070:three_prime_UTR 40.0%
TTCTTGGTTATGGGGTTCAA+TGG - chr8_1:52361216-52361235 Msa1200070:three_prime_UTR 40.0%
TGGTTATATGAGGTCAGTAG+CGG - chr8_1:52361632-52361651 Msa1200070:CDS 40.0%
AAAAACACATGGAAAGTGGC+CGG + chr8_1:52361777-52361796 None:intergenic 40.0%
!!! GGTGGAGAAGTGTTTTATCT+TGG - chr8_1:52362013-52362032 Msa1200070:intron 40.0%
AGAGAAAGGGAAAGCAAACT+AGG + chr8_1:52362148-52362167 None:intergenic 40.0%
! AAAAAGTGGAACCGCCATTT+TGG + chr8_1:52362521-52362540 None:intergenic 40.0%
GGGAATGTTAAAGAATGCCT+TGG - chr8_1:52362857-52362876 Msa1200070:CDS 40.0%
TAAAGAATGCCTTGGGACAT+TGG - chr8_1:52362865-52362884 Msa1200070:CDS 40.0%
GCATATGTCGTGAATCCTAA+GGG - chr8_1:52362981-52363000 Msa1200070:CDS 40.0%
GTCGAACCCATTATTGTGTT+TGG - chr8_1:52363343-52363362 Msa1200070:CDS 40.0%
!! ACTATTTGTTCCTTTTGGGG+TGG - chr8_1:52363401-52363420 Msa1200070:CDS 40.0%
AAGCACAAGGTGTACTAAAG+AGG + chr8_1:52363427-52363446 None:intergenic 40.0%
TAGTACACCTTGTGCTTAAG+AGG - chr8_1:52363430-52363449 Msa1200070:CDS 40.0%
AATGGATCCTCTTAAGCACA+AGG + chr8_1:52363440-52363459 None:intergenic 40.0%
!! TCCACTTTTCCAAATGGGTA+GGG + chr8_1:52363774-52363793 None:intergenic 40.0%
!! ATCCACTTTTCCAAATGGGT+AGG + chr8_1:52363775-52363794 None:intergenic 40.0%
!! CAGGATCCACTTTTCCAAAT+GGG + chr8_1:52363779-52363798 None:intergenic 40.0%
!! ACAGGATCCACTTTTCCAAA+TGG + chr8_1:52363780-52363799 None:intergenic 40.0%
AGGTCTGCAATGAAAATGAC+AGG + chr8_1:52363798-52363817 None:intergenic 40.0%
! GTTCAGCGGTTGTGAAATTT+TGG + chr8_1:52364347-52364366 None:intergenic 40.0%
!! AGACACTTTGTTGATTTCCC+TGG - chr8_1:52364459-52364478 Msa1200070:intron 40.0%
GTCTAAAAGTTAACCAGTCC+TGG + chr8_1:52364608-52364627 None:intergenic 40.0%
! TTCCTTCTGAGCCTTTTAAG+TGG - chr8_1:52364703-52364722 Msa1200070:intron 40.0%
ATATGCTGCAGCCACTTAAA+AGG + chr8_1:52364717-52364736 None:intergenic 40.0%
AATGCAAGTGTTCGGTTAAC+TGG + chr8_1:52364784-52364803 None:intergenic 40.0%
TGAGCGATAATGCAAGTGTT+CGG + chr8_1:52364792-52364811 None:intergenic 40.0%
! ATTTGCAGCAAGGGTGTAAA+GGG + chr8_1:52364842-52364861 None:intergenic 40.0%
! AATTTGCAGCAAGGGTGTAA+AGG + chr8_1:52364843-52364862 None:intergenic 40.0%
GGTCTATTGAATTTGCAGCA+AGG + chr8_1:52364852-52364871 None:intergenic 40.0%
GATACAACGAGTCAGATGAT+GGG + chr8_1:52364873-52364892 None:intergenic 40.0%
AGATACAACGAGTCAGATGA+TGG + chr8_1:52364874-52364893 None:intergenic 40.0%
GCTGCAATGCAAACAAAAAG+AGG + chr8_1:52364916-52364935 None:intergenic 40.0%
AACTTCTTAGCCATCTTCAC+TGG - chr8_1:52365021-52365040 Msa1200070:intron 40.0%
AGCCAAACAAGAGGAGATAA+AGG + chr8_1:52365047-52365066 None:intergenic 40.0%
ACGATGCCAGGAATAAACAA+CGG + chr8_1:52365135-52365154 None:intergenic 40.0%
CGCCACAATAGTAGTATTGT+TGG - chr8_1:52365267-52365286 Msa1200070:intron 40.0%
AGTATTGTTGGCAATGGAGA+TGG - chr8_1:52365279-52365298 Msa1200070:intron 40.0%
TACAGTCTGCTAAGTGACAA+CGG - chr8_1:52365303-52365322 Msa1200070:intron 40.0%
GTGTGTTGTGATAGGATGAT+TGG - chr8_1:52365363-52365382 Msa1200070:intron 40.0%
! TTGTCCGCAGATTAGACTTT+TGG - chr8_1:52365433-52365452 Msa1200070:intron 40.0%
TACATCACATACTTCTGTGG+AGG - chr8_1:52365462-52365481 Msa1200070:intron 40.0%
ACTTACCTACGAACATAGTC+CGG + chr8_1:52365618-52365637 None:intergenic 40.0%
GGAACTTAAAGGACCAATGT+GGG + chr8_1:52365699-52365718 None:intergenic 40.0%
TGGAACTTAAAGGACCAATG+TGG + chr8_1:52365700-52365719 None:intergenic 40.0%
GCATACGGAATGGAACTTAA+AGG + chr8_1:52365710-52365729 None:intergenic 40.0%
ATGTTACTGACGTGACAAAC+AGG - chr8_1:52365758-52365777 Msa1200070:intron 40.0%
AATAGGTTGCATAGCCTAAG+AGG - chr8_1:52365898-52365917 Msa1200070:intron 40.0%
AATGGGCAAGAGTAACACAT+TGG - chr8_1:52366018-52366037 Msa1200070:intron 40.0%
ACACATTGGAGATAACAGAG+GGG - chr8_1:52366032-52366051 Msa1200070:intron 40.0%
TGGCATGACATGAACAAGTT+TGG + chr8_1:52366076-52366095 None:intergenic 40.0%
TCTACTTTGCAAGAACTGGT+TGG - chr8_1:52366307-52366326 Msa1200070:intron 40.0%
!! TGGTGTTGGTATAAGTGCAA+TGG + chr8_1:52366337-52366356 None:intergenic 40.0%
AAGAAGAACGCAATTGGTGT+TGG + chr8_1:52366351-52366370 None:intergenic 40.0%
CATACTGGAACTGCACTAAT+TGG - chr8_1:52366402-52366421 Msa1200070:intron 40.0%
AGATGTAACTGAAACAGCAG+CGG + chr8_1:52366451-52366470 None:intergenic 40.0%
GTGATTGACACCTACACTAT+TGG + chr8_1:52366487-52366506 None:intergenic 40.0%
CCATAGAGAAGTGAACCAAT+TGG + chr8_1:52366531-52366550 None:intergenic 40.0%
! CCAATTGGTTCACTTCTCTA+TGG - chr8_1:52366528-52366547 Msa1200070:intron 40.0%
GCTACTTCTGGACATTTATC+TGG - chr8_1:52366643-52366662 Msa1200070:intron 40.0%
ACTTCTGGACATTTATCTGG+TGG - chr8_1:52366646-52366665 Msa1200070:intron 40.0%
CTTCTGGACATTTATCTGGT+GGG - chr8_1:52366647-52366666 Msa1200070:intron 40.0%
TTCTGGACATTTATCTGGTG+GGG - chr8_1:52366648-52366667 Msa1200070:intron 40.0%
! TAACTTGCGTTGAAATACGG+TGG + chr8_1:52366752-52366771 None:intergenic 40.0%
TCATAAGATGGCAGCATCAT+TGG + chr8_1:52367147-52367166 None:intergenic 40.0%
!!! TTCACCATTTTTTGGGGGTA+GGG + chr8_1:52367347-52367366 None:intergenic 40.0%
!!! TTTCACCATTTTTTGGGGGT+AGG + chr8_1:52367348-52367367 None:intergenic 40.0%
TTTCTATCGTTGTCTCTGCG+TGG + chr8_1:52360840-52360859 None:intergenic 45.0%
! GGGATTCTTCGACGTGATTT+TGG + chr8_1:52360921-52360940 None:intergenic 45.0%
!! TCGCGTTTCGCTTTTAATGG+CGG - chr8_1:52360953-52360972 Msa1200070:three_prime_UTR 45.0%
TGGCTACTGCGAATGATATG+GGG - chr8_1:52361111-52361130 Msa1200070:three_prime_UTR 45.0%
!! ATTTTGGCAAGAGTGATCGG+TGG - chr8_1:52361995-52362014 Msa1200070:intron 45.0%
!! TAGCGGTTGTGTTTGTTGTC+TGG - chr8_1:52362450-52362469 Msa1200070:intron 45.0%
GTGGTCCAATTCCAAAATGG+CGG - chr8_1:52362507-52362526 Msa1200070:intron 45.0%
!!! TGGAACCGCCATTTTGGAAT+TGG + chr8_1:52362515-52362534 None:intergenic 45.0%
CGCATATGTCGTGAATCCTA+AGG - chr8_1:52362980-52362999 Msa1200070:CDS 45.0%
TGCTTAAGAGGATCCATTGC+CGG - chr8_1:52363442-52363461 Msa1200070:CDS 45.0%
! ATCTAGGTTTTCTCTGGTGC+AGG + chr8_1:52363597-52363616 None:intergenic 45.0%
AATACGGAACCCTACCCATT+TGG - chr8_1:52363762-52363781 Msa1200070:intron 45.0%
ACCCTACCCATTTGGAAAAG+TGG - chr8_1:52363770-52363789 Msa1200070:intron 45.0%
GTTGAAACGCGAGAAATTGG+AGG + chr8_1:52364260-52364279 None:intergenic 45.0%
! AAGCTGCAATTCGGCACTTT+TGG - chr8_1:52364304-52364323 Msa1200070:intron 45.0%
AGCCACTTAAAAGGCTCAGA+AGG + chr8_1:52364708-52364727 None:intergenic 45.0%
TCGCTCACTGTGAGTTTCAA+TGG - chr8_1:52364805-52364824 Msa1200070:intron 45.0%
GAGATAAAGGCCAGTGAAGA+TGG + chr8_1:52365034-52365053 None:intergenic 45.0%
GGCCTTTATCTCCTCTTGTT+TGG - chr8_1:52365042-52365061 Msa1200070:intron 45.0%
AAGCAGATGAGCCAAACAAG+AGG + chr8_1:52365056-52365075 None:intergenic 45.0%
GAAGAACAGTTCCACCAAAG+TGG + chr8_1:52365101-52365120 None:intergenic 45.0%
GAATAAACAACGGGAGGATG+AGG + chr8_1:52365125-52365144 None:intergenic 45.0%
ATCCTCCCGTTGTTTATTCC+TGG - chr8_1:52365126-52365145 Msa1200070:intron 45.0%
CGATGCCAGGAATAAACAAC+GGG + chr8_1:52365134-52365153 None:intergenic 45.0%
TTCCTGGCATCGTATATGCT+CGG - chr8_1:52365142-52365161 Msa1200070:intron 45.0%
TAATGCTGGAACCTTCTACC+CGG + chr8_1:52365200-52365219 None:intergenic 45.0%
! TTGTGATAGGATGATTGGCC+AGG - chr8_1:52365368-52365387 Msa1200070:intron 45.0%
!! AATGCTAGGAGAAGAGCACT+CGG - chr8_1:52365401-52365420 Msa1200070:intron 45.0%
! TACTTCTGTGGAGGTACGAT+TGG - chr8_1:52365471-52365490 Msa1200070:intron 45.0%
GGACAGATTGCTCAATCTCT+CGG - chr8_1:52365516-52365535 Msa1200070:intron 45.0%
GGATGCGTAGAGAGTAACAA+GGG + chr8_1:52365562-52365581 None:intergenic 45.0%
AGGATGCGTAGAGAGTAACA+AGG + chr8_1:52365563-52365582 None:intergenic 45.0%
GACGCAGTGAAAAAGGATAG+TGG + chr8_1:52365734-52365753 None:intergenic 45.0%
!! CTATCCTTTTTCACTGCGTC+TGG - chr8_1:52365734-52365753 Msa1200070:intron 45.0%
CATACCAGACGCAGTGAAAA+AGG + chr8_1:52365741-52365760 None:intergenic 45.0%
GTGACAAACAGGAACAGAGT+TGG - chr8_1:52365769-52365788 Msa1200070:intron 45.0%
ACTTGAACCAGATTGGAGAG+AGG + chr8_1:52365813-52365832 None:intergenic 45.0%
AATATCGTGCGAGAGAGAAG+AGG - chr8_1:52365875-52365894 Msa1200070:intron 45.0%
GCAAGCAAGAAGAACGCAAT+TGG + chr8_1:52366357-52366376 None:intergenic 45.0%
!! GCACTAATTGGGTTGAGTTC+TGG - chr8_1:52366414-52366433 Msa1200070:intron 45.0%
CTGTTTGGACCCAATAGTGT+AGG - chr8_1:52366474-52366493 Msa1200070:intron 45.0%
!! ACCGGGAAACTTGATAACGT+CGG - chr8_1:52366593-52366612 Msa1200070:intron 45.0%
TCCGACGTTATCAAGTTTCC+CGG + chr8_1:52366597-52366616 None:intergenic 45.0%
! TCGGACTCAGTAGTTTGCAT+GGG - chr8_1:52366612-52366631 Msa1200070:intron 45.0%
! ACTCAGTAGTTTGCATGGGA+AGG - chr8_1:52366616-52366635 Msa1200070:intron 45.0%
GACATGATGATCACCTGTAC+AGG - chr8_1:52366799-52366818 Msa1200070:intron 45.0%
CAATAATACAGAATGGCGCG+TGG - chr8_1:52367018-52367037 Msa1200070:CDS 45.0%
GAAGTTCTGCAGCCATGATT+TGG - chr8_1:52367049-52367068 Msa1200070:CDS 45.0%
!!! TCACCATTTTTTGGGGGTAG+GGG + chr8_1:52367346-52367365 None:intergenic 45.0%
!! TTAATAATAATAATTAAGAA+AGG + chr8_1:52361339-52361358 None:intergenic 5.0%
!!! TTTAATTAAAACTAATTTTT+TGG + chr8_1:52361824-52361843 None:intergenic 5.0%
!!! TTATAAAAGATAAAATATTT+TGG - chr8_1:52362733-52362752 Msa1200070:CDS 5.0%
!!! AATGATAAATATTTTTTTAA+AGG + chr8_1:52362829-52362848 None:intergenic 5.0%
!!! TTATTTATCTTTTTATAATA+AGG + chr8_1:52363959-52363978 None:intergenic 5.0%
!! CGCGTTTCGCTTTTAATGGC+GGG - chr8_1:52360954-52360973 Msa1200070:three_prime_UTR 50.0%
GCTGCGTTTATGGGGTTTCT+TGG - chr8_1:52361200-52361219 Msa1200070:three_prime_UTR 50.0%
GATCAGCATCAGCAACAACC+TGG - chr8_1:52361436-52361455 Msa1200070:three_prime_UTR 50.0%
CGGGATACTATGCAACTCAC+GGG + chr8_1:52361873-52361892 None:intergenic 50.0%
CCGGGATACTATGCAACTCA+CGG + chr8_1:52361874-52361893 None:intergenic 50.0%
CCGTGAGTTGCATAGTATCC+CGG - chr8_1:52361871-52361890 Msa1200070:CDS 50.0%
ACTAAAGAGGCCACCCCAAA+AGG + chr8_1:52363414-52363433 None:intergenic 50.0%
CGCGTTGAAACGCGAGAAAT+TGG + chr8_1:52364263-52364282 None:intergenic 50.0%
TAAGTGGCTGCAGCATATGC+TGG - chr8_1:52364719-52364738 Msa1200070:intron 50.0%
CGGTTGGCGAAGAATTGGAA+TGG + chr8_1:52364941-52364960 None:intergenic 50.0%
AAAGGCGGTTGGCGAAGAAT+TGG + chr8_1:52364946-52364965 None:intergenic 50.0%
! TCAGGAGGGAGAGGTTCTAA+AGG + chr8_1:52364964-52364983 None:intergenic 50.0%
TTAACTGCATCAGGAGGGAG+AGG + chr8_1:52364973-52364992 None:intergenic 50.0%
TCCCTCCTGATGCAGTTAAC+CGG - chr8_1:52364974-52364993 Msa1200070:intron 50.0%
TGGCTCATCTGCTTCTTCCA+TGG - chr8_1:52365062-52365081 Msa1200070:intron 50.0%
TGCCAGGAATAAACAACGGG+AGG + chr8_1:52365131-52365150 None:intergenic 50.0%
TCCTGGCATCGTATATGCTC+GGG - chr8_1:52365143-52365162 Msa1200070:intron 50.0%
CATCGTATATGCTCGGGCTT+GGG - chr8_1:52365149-52365168 Msa1200070:intron 50.0%
GTACCATCCATTCCAGCTTC+CGG - chr8_1:52365178-52365197 Msa1200070:intron 50.0%
TACCATCCATTCCAGCTTCC+GGG - chr8_1:52365179-52365198 Msa1200070:intron 50.0%
CTAGCATTGTCAGGTGATCC+TGG + chr8_1:52365389-52365408 None:intergenic 50.0%
CAGGATCACCTGACAATGCT+AGG - chr8_1:52365387-52365406 Msa1200070:intron 50.0%
GCTCTTCTCCTAGCATTGTC+AGG + chr8_1:52365398-52365417 None:intergenic 50.0%
CAAGCGGCCGAAAAACGAAA+AGG + chr8_1:52365583-52365602 None:intergenic 50.0%
! GGATAGTGGTGCATACGGAA+TGG + chr8_1:52365720-52365739 None:intergenic 50.0%
! AGAGGTGCACGTAGGATAAG+TGG + chr8_1:52365795-52365814 None:intergenic 50.0%
GTGCGAGAGAGAAGAGGAAT+AGG - chr8_1:52365881-52365900 Msa1200070:intron 50.0%
TGGGGCAACGAATACCTCTT+AGG + chr8_1:52365915-52365934 None:intergenic 50.0%
!! AAGAGGTATTCGTTGCCCCA+CGG - chr8_1:52365915-52365934 Msa1200070:intron 50.0%
! CCATGGGATTTTTACCCGTG+GGG + chr8_1:52365933-52365952 None:intergenic 50.0%
! GCCATGGGATTTTTACCCGT+GGG + chr8_1:52365934-52365953 None:intergenic 50.0%
! TGCCATGGGATTTTTACCCG+TGG + chr8_1:52365935-52365954 None:intergenic 50.0%
! AGATAACAGAGGGGTACACG+TGG - chr8_1:52366041-52366060 Msa1200070:intron 50.0%
! GATAACAGAGGGGTACACGT+GGG - chr8_1:52366042-52366061 Msa1200070:intron 50.0%
TGCCAGAGAACTGTCTGATG+CGG + chr8_1:52366379-52366398 None:intergenic 50.0%
AGTTCTCTGGCACTGCATAC+TGG - chr8_1:52366387-52366406 Msa1200070:intron 50.0%
! GTCGGACTCAGTAGTTTGCA+TGG - chr8_1:52366611-52366630 Msa1200070:intron 50.0%
! TGGGAAGGCAATGCTACTTC+TGG - chr8_1:52366631-52366650 Msa1200070:intron 50.0%
ATCAAGAGGCGGCGATGATA+AGG - chr8_1:52366907-52366926 Msa1200070:intron 50.0%
ATGGCTGCAGAACTTCCAGA+AGG + chr8_1:52367045-52367064 None:intergenic 50.0%
! TGACCTTGTTTGAGGCATGC+TGG - chr8_1:52367119-52367138 Msa1200070:CDS 50.0%
GATCCAGCATGCCTCAAACA+AGG + chr8_1:52367125-52367144 None:intergenic 50.0%
!!! ACCATTTTTTGGGGGTAGGG+GGG + chr8_1:52367344-52367363 None:intergenic 50.0%
!!! CACCATTTTTTGGGGGTAGG+GGG + chr8_1:52367345-52367364 None:intergenic 50.0%
TGGCGGGACAATCACGGAAA+TGG - chr8_1:52360970-52360989 Msa1200070:three_prime_UTR 55.0%
! ATGAGGTCAGTAGCGGAGCT+AGG - chr8_1:52361639-52361658 Msa1200070:CDS 55.0%
GGTCAGTGGTAACCGCTAAC+CGG - chr8_1:52364574-52364593 Msa1200070:intron 55.0%
! CTGGCTTAGCTACCGGTTAG+CGG + chr8_1:52364589-52364608 None:intergenic 55.0%
ACCAGTCCTGGCTTAGCTAC+CGG + chr8_1:52364596-52364615 None:intergenic 55.0%
!! GGAGAGGTTCTAAAGGCGGT+TGG + chr8_1:52364957-52364976 None:intergenic 55.0%
!! GGAGGGAGAGGTTCTAAAGG+CGG + chr8_1:52364961-52364980 None:intergenic 55.0%
CCCGGTTAACTGCATCAGGA+GGG + chr8_1:52364978-52364997 None:intergenic 55.0%
CCCTCCTGATGCAGTTAACC+GGG - chr8_1:52364975-52364994 Msa1200070:intron 55.0%
TCCCGGTTAACTGCATCAGG+AGG + chr8_1:52364979-52364998 None:intergenic 55.0%
GAGTCCCGGTTAACTGCATC+AGG + chr8_1:52364982-52365001 None:intergenic 55.0%
CTTCTTCCATGGCTTCAGCC+CGG - chr8_1:52365073-52365092 Msa1200070:intron 55.0%
AGTTCCACCAAAGTGGAGCC+GGG + chr8_1:52365094-52365113 None:intergenic 55.0%
CAGTTCCACCAAAGTGGAGC+CGG + chr8_1:52365095-52365114 None:intergenic 55.0%
GCATCGTATATGCTCGGGCT+TGG - chr8_1:52365148-52365167 Msa1200070:intron 55.0%
TACCCGGAAGCTGGAATGGA+TGG + chr8_1:52365184-52365203 None:intergenic 55.0%
CTTCTACCCGGAAGCTGGAA+TGG + chr8_1:52365188-52365207 None:intergenic 55.0%
CATTCCAGCTTCCGGGTAGA+AGG - chr8_1:52365186-52365205 Msa1200070:intron 55.0%
CTGGACCGGACTATGTTCGT+AGG - chr8_1:52365610-52365629 Msa1200070:intron 55.0%
! GATTGGAGAGAGGTGCACGT+AGG + chr8_1:52365803-52365822 None:intergenic 55.0%
ACGTGCACCTCTCTCCAATC+TGG - chr8_1:52365803-52365822 Msa1200070:intron 55.0%
!! AGAGGTATTCGTTGCCCCAC+GGG - chr8_1:52365916-52365935 Msa1200070:intron 55.0%
CCCCACGGGTAAAAATCCCA+TGG - chr8_1:52365930-52365949 Msa1200070:intron 55.0%
! AGGGGTACACGTGGGATAAG+TGG - chr8_1:52366050-52366069 Msa1200070:intron 55.0%
TGCCGCATCAGACAGTTCTC+TGG - chr8_1:52366374-52366393 Msa1200070:intron 55.0%
TGCCCATGCACACTCAACAC+CGG - chr8_1:52366575-52366594 Msa1200070:intron 55.0%
! TCCCGGTGTTGAGTGTGCAT+GGG + chr8_1:52366580-52366599 None:intergenic 55.0%
! TTCCCGGTGTTGAGTGTGCA+TGG + chr8_1:52366581-52366600 None:intergenic 55.0%
TGGGGATGCACATCTGTCGT+GGG - chr8_1:52366666-52366685 Msa1200070:intron 55.0%
ATGCACATCTGTCGTGGGAC+TGG - chr8_1:52366671-52366690 Msa1200070:intron 55.0%
TGCACATCTGTCGTGGGACT+GGG - chr8_1:52366672-52366691 Msa1200070:intron 55.0%
CTGCTTCTCAACGCCTGTAC+AGG + chr8_1:52366815-52366834 None:intergenic 55.0%
!!! ATTTTTTGGGGGTAGGGGGG+AGG + chr8_1:52367341-52367360 None:intergenic 55.0%
TCCCCCCTACCCCCAAAAAA+TGG - chr8_1:52367340-52367359 Msa1200070:CDS 55.0%
CGCTAACCGGTAGCTAAGCC+AGG - chr8_1:52364587-52364606 Msa1200070:intron 60.0%
ACCGGTAGCTAAGCCAGGAC+TGG - chr8_1:52364592-52364611 Msa1200070:intron 60.0%
GCCCGAGCATATACGATGCC+AGG + chr8_1:52365147-52365166 None:intergenic 60.0%
GGAACCTTCTACCCGGAAGC+TGG + chr8_1:52365193-52365212 None:intergenic 60.0%
!! AGGAGAAGAGCACTCGGCTG+CGG - chr8_1:52365407-52365426 Msa1200070:intron 60.0%
TTCGGCCGCTTGCTTTCAGC+TGG - chr8_1:52365591-52365610 Msa1200070:intron 60.0%
CCGGTCCAGCTGAAAGCAAG+CGG + chr8_1:52365599-52365618 None:intergenic 60.0%
CCGCTTGCTTTCAGCTGGAC+CGG - chr8_1:52365596-52365615 Msa1200070:intron 60.0%
GCCCATGCACACTCAACACC+GGG - chr8_1:52366576-52366595 Msa1200070:intron 60.0%
GTGGGGATGCACATCTGTCG+TGG - chr8_1:52366665-52366684 Msa1200070:intron 60.0%
AGAATGGCGCGTGGTCCTTC+TGG - chr8_1:52367027-52367046 Msa1200070:CDS 60.0%
GCTTCAGCCCGGCTCCACTT+TGG - chr8_1:52365084-52365103 Msa1200070:intron 65.0%
TCAGCCCGGCTCCACTTTGG+TGG - chr8_1:52365087-52365106 Msa1200070:intron 65.0%
GTGGAGCCGGGCTGAAGCCA+TGG + chr8_1:52365082-52365101 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 52360831 52367428 52360831 ID=Msa1200070;Name=Msa1200070
chr8_1 mRNA 52360831 52367428 52360831 ID=Msa1200070-mRNA-1;Parent=Msa1200070;Name=Msa1200070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.66|1|1|1|3|646|619
chr8_1 exon 52360831 52361957 52360831 ID=Msa1200070-mRNA-1:exon:16702;Parent=Msa1200070-mRNA-1
chr8_1 exon 52362628 52363559 52362628 ID=Msa1200070-mRNA-1:exon:16701;Parent=Msa1200070-mRNA-1
chr8_1 exon 52366982 52367428 52366982 ID=Msa1200070-mRNA-1:exon:16700;Parent=Msa1200070-mRNA-1
chr8_1 CDS 52366982 52367428 52366982 ID=Msa1200070-mRNA-1:cds;Parent=Msa1200070-mRNA-1
chr8_1 CDS 52362628 52363559 52362628 ID=Msa1200070-mRNA-1:cds;Parent=Msa1200070-mRNA-1
chr8_1 CDS 52361477 52361957 52361477 ID=Msa1200070-mRNA-1:cds;Parent=Msa1200070-mRNA-1
chr8_1 three_prime_UTR 52360831 52361476 52360831 ID=Msa1200070-mRNA-1:three_prime_utr;Parent=Msa1200070-mRNA-1
Gene Sequence

>Msa1200070

ATGAGGCCACGCAGAGACAACGATAGAAACAACATCAATAACAGATTCAATTATTTCAATTCAAATTCCAACAATCTCGAAGAATCACCAAAATCACGTCGAAGAATCCCTTTTCTAAATAATCGCGTTTCGCTTTTAATGGCGGGACAATCACGGAAATGGATGATCCTTGTCGTTACGATATGGATTCAAGCATTTACAGGAACGAATTTCGATTTCTCTCAATATTCATCGTCGTTGAAATCTGCTCTTCAAATCTCACAGGTTCAGCTGAATTATTTGGCTACTGCGAATGATATGGGGAAGATTTTCGGTTGGTCTTCTGGTTTAGCTCTTATGCATCTTCCTGTTTCGGCTGTTATGTTCATTGCTGCGTTTATGGGGTTTCTTGGTTATGGGGTTCAATGGCTTCTCATTAATCATTTCATTTCTTTGCCTTATTTTCTGGTGTTCCTTCTGAGCCTTTTAAGTGGCTGCAGCATATGCTGGTTCAACACAGTATGTTTTATTCTCTGCATTAGGAATTTTCCAGTTAACCGAACACTTGCATTATCGCTCACTGTGAGTTTCAATGGTGTCAGTGCGGCCCTTTACACCCTTGCTGCAAATTCAATAGACCCATCATCTGACTCGTTGTATCTTCTTTTGAATGCTCTTGTTCCTCTTTTTGTTTGCATTGCAGCGACCATTCCAATTCTTCGCCAACCGCCTTTAGAACCTCTCCCTCCTGATGCAGTTAACCGGGACTCACTAGTATTTCTAATCTTGAACTTCTTAGCCATCTTCACTGGCCTTTATCTCCTCTTGTTTGGCTCATCTGCTTCTTCCATGGCTTCAGCCCGGCTCCACTTTGGTGGAACTGTTCTTCTCCTCATCCTCCCGTTGTTTATTCCTGGCATCGTATATGCTCGGGCTTGGGCTCAGCGTACCATCCATTCCAGCTTCCGGGTAGAAGGTTCCAGCATTATTCTTATTCATGATGATGATCTTGAGCTGCATAAAGAACTACTTAGCCGCCACAATAGTAGTATTGTTGGCAATGGAGATGGTTACAGTCTGCTAAGTGACAACGGATCCATGTTTTCAAGTCAGAAGGAAAGTGATAGTGATGTGTGTTGTGATAGGATGATTGGCCAGGATCACCTGACAATGCTAGGAGAAGAGCACTCGGCTGCGGTGATTGTCCGCAGATTAGACTTTTGGCTATACTACATCACATACTTCTGTGGAGGTACGATTGGTCTTGTCTATAGCAATAATCTGGGACAGATTGCTCAATCTCTCGGTCTGAAATCAAGTACTTCTACCCTTGTTACTCTCTACGCATCCTTTTCGTTTTTCGGCCGCTTGCTTTCAGCTGGACCGGACTATGTTCGTAGTAAGTTCTACTTTGCAAGAACTGGTTGGCTCTCCATTGCACTTATACCAACACCAATTGCGTTCTTCTTGCTTGCCGCATCAGACAGTTCTCTGGCACTGCATACTGGAACTGCACTAATTGGGTTGAGTTCTGGTTTCATATTTGCCGCTGCTGTTTCAGTTACATCTGAACTGTTTGGACCCAATAGTGTAGGTGTCAATCACAACATTCTCATAACAAATATCCCAATTGGTTCACTTCTCTATGGTTTTCTTGCTGCACTAGTTTATGATGCCCATGCACACTCAACACCGGGAAACTTGATAACGTCGGACTCAGTAGTTTGCATGGGAAGGCAATGCTACTTCTGGACATTTATCTGGTGGGGATGCACATCTGTCGTGGGACTGGGTTCTAGTACGCTGTTATTCCTAAGAACCAAATATGCGTATGAACATTTTGAGAACCACCGTATTTCAACGCAAGTTATTGTGCCTTAA
Protein sequence

>Msa1200070

MRPRRDNDRNNINNRFNYFNSNSNNLEESPKSRRRIPFLNNRVSLLMAGQSRKWMILVVTIWIQAFTGTNFDFSQYSSSLKSALQISQVQLNYLATANDMGKIFGWSSGLALMHLPVSAVMFIAAFMGFLGYGVQWLLINHFISLPYFLVFLLSLLSGCSICWFNTVCFILCIRNFPVNRTLALSLTVSFNGVSAALYTLAANSIDPSSDSLYLLLNALVPLFVCIAATIPILRQPPLEPLPPDAVNRDSLVFLILNFLAIFTGLYLLLFGSSASSMASARLHFGGTVLLLILPLFIPGIVYARAWAQRTIHSSFRVEGSSIILIHDDDLELHKELLSRHNSSIVGNGDGYSLLSDNGSMFSSQKESDSDVCCDRMIGQDHLTMLGEEHSAAVIVRRLDFWLYYITYFCGGTIGLVYSNNLGQIAQSLGLKSSTSTLVTLYASFSFFGRLLSAGPDYVRSKFYFARTGWLSIALIPTPIAFFLLAASDSSLALHTGTALIGLSSGFIFAAAVSVTSELFGPNSVGVNHNILITNIPIGSLLYGFLAALVYDAHAHSTPGNLITSDSVVCMGRQCYFWTFIWWGCTSVVGLGSSTLLFLRTKYAYEHFENHRISTQVIVP*