AlfalfaGEDB | Msa1200070

M. sativa cultivar zhongmu-4 / Msa1200070

KEGG: -
GO: GO:0000741 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006970 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0009553 GO:0009559 GO:0009561 GO:0009628 GO:0009651 GO:0009987 GO:0010197 GO:0016043 GO:0030154 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0050896 GO:0071840
PFAM: PF06813.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1200070	XP_003628988.1	97.254	619	12	2	1	619	1	614	0.0	1206

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1200070	sp\|F4I9E1\|NFD4_ARATH	56.149	618	219	12	1	613	1	571	0.0	593

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0056910	Msa1200070	0.800195	1.615007e-48	-8.615850e-47
Msa0375500	Msa1200070	0.800639	1.311663e-48	-8.615850e-47
Msa0424300	Msa1200070	0.805605	1.231202e-49	-8.615850e-47
Msa0471210	Msa1200070	0.803166	3.969083e-49	-8.615850e-47
Msa0515930	Msa1200070	0.804838	1.782108e-49	-8.615850e-47
Msa0706130	Msa1200070	-0.815354	9.652395e-52	-8.615850e-47
Msa1200070	Msa1329090	0.994054	3.249278e-204	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1200070	MtrunA17_Chr8g0369621	97.254	619	12	2	1	619	1	614	0.0	1206
Msa1200070	MtrunA17_Chr5g0408921	74.435	575	141	4	47	618	1	572	0.0	850
Msa1200070	MtrunA17_Chr7g0251871	57.840	574	226	3	47	616	1	562	0.0	624
Msa1200070	MtrunA17_Chr3g0106801	37.719	570	291	16	47	606	1	516	4.54e-100	314
Msa1200070	MtrunA17_Chr4g0037301	32.746	568	325	15	51	606	13	535	7.22e-80	262
Msa1200070	MtrunA17_Chr5g0405621	31.818	572	337	14	51	616	11	535	6.91e-71	238
Msa1200070	MtrunA17_Chr4g0064981	28.130	583	365	16	48	605	6	559	2.95e-52	189
Msa1200070	MtrunA17_Chr2g0304561	27.682	578	378	15	43	605	1	553	9.28e-52	187
Msa1200070	MtrunA17_Chr3g0106821	44.000	225	118	5	47	269	1	219	8.61e-50	177
Msa1200070	MtrunA17_Chr3g0106821	44.792	96	46	2	362	457	285	373	1.99e-16	81.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1200070	AT4G19450.1	69.739	575	163	4	47	616	1	569	0.0	776
Msa1200070	AT5G45275.1	69.151	577	163	4	47	617	1	568	0.0	771
Msa1200070	AT1G31470.1	56.149	618	219	12	1	613	1	571	0.0	593
Msa1200070	AT4G19450.2	69.212	419	119	3	47	460	1	414	0.0	570
Msa1200070	AT3G01630.2	50.264	569	236	8	52	612	40	569	0.0	528
Msa1200070	AT3G01630.1	50.264	569	236	8	52	612	22	551	0.0	527
Msa1200070	AT2G30300.1	34.507	568	289	15	51	606	2	498	1.03e-81	266
Msa1200070	AT4G34950.1	30.488	574	360	13	53	615	16	561	4.78e-80	264
Msa1200070	AT2G16660.1	30.824	558	342	11	53	606	14	531	2.94e-68	232
Msa1200070	AT1G80530.1	29.412	578	347	20	48	605	8	544	4.54e-50	182

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Find 177 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAAAATATAAGGTAAA+TGG	0.172313	8_1:+52360987	None:intergenic
AAAATGTTCATACGCATATT+TGG	0.223002	8_1:+52361516	None:intergenic
AAACGCGATTATTTAGAAAA+GGG	0.459996	8_1:+52367299	None:intergenic
AAAGAAAATATAAGGTAAAT+GGG	0.404971	8_1:+52360988	None:intergenic
AAAGATCTCCAAAGAATATG+GGG	0.611675	8_1:-52361019	Msa1200070:three_prime_UTR
AAAGGCGGTTGGCGAAGAAT+TGG	0.382733	8_1:+52363294	None:intergenic
AAATATACACAATCATAAGA+TGG	0.558420	8_1:+52361081	None:intergenic
AACTTCTTAGCCATCTTCAC+TGG	0.457087	8_1:-52363216	Msa1200070:CDS
AAGAAGAACGCAATTGGTGT+TGG	0.570043	8_1:+52361889	None:intergenic
AAGAGTTAGATATCAAGAGG+CGG	0.683061	8_1:-52361341	Msa1200070:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAACGCGATTATTTAGAAA+AGG	+	chr8_1:52360942-52360961	None:intergenic	30.0%
ATATGGATTCAAGCATTTAC+AGG	-	chr8_1:52361011-52361030	Msa1200070:three_prime_UTR	30.0%
AACTCAAAACATCTACAATG+TGG	-	chr8_1:52361612-52361631	Msa1200070:CDS	30.0%
ATCTACAATGTGGTTATATG+AGG	-	chr8_1:52361622-52361641	Msa1200070:CDS	30.0%
TCATAAACATCTACCATGTA+TGG	-	chr8_1:52361680-52361699	Msa1200070:CDS	30.0%
TATAACCATGTAACCATACA+TGG	+	chr8_1:52361696-52361715	None:intergenic	30.0%
GGAGGTTTATTAAAAACTGT+TGG	-	chr8_1:52362208-52362227	Msa1200070:intron	30.0%
GTCGATATTGTTATACTTGA+CGG	-	chr8_1:52362605-52362624	Msa1200070:intron	30.0%
CCGACATTATTATAAGGTTT+CGG	+	chr8_1:52362656-52362675	None:intergenic	30.0%
CCGAAACCTTATAATAATGT+CGG	-	chr8_1:52362653-52362672	Msa1200070:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_1	gene	52360831	52367428	52360831	ID=Msa1200070;Name=Msa1200070
chr8_1	mRNA	52360831	52367428	52360831	ID=Msa1200070-mRNA-1;Parent=Msa1200070;Name=Msa1200070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0\|1\|0.66\|1\|1\|1\|3\|646\|619
chr8_1	exon	52360831	52361957	52360831	ID=Msa1200070-mRNA-1:exon:16702;Parent=Msa1200070-mRNA-1
chr8_1	exon	52362628	52363559	52362628	ID=Msa1200070-mRNA-1:exon:16701;Parent=Msa1200070-mRNA-1
chr8_1	exon	52366982	52367428	52366982	ID=Msa1200070-mRNA-1:exon:16700;Parent=Msa1200070-mRNA-1
chr8_1	CDS	52366982	52367428	52366982	ID=Msa1200070-mRNA-1:cds;Parent=Msa1200070-mRNA-1
chr8_1	CDS	52362628	52363559	52362628	ID=Msa1200070-mRNA-1:cds;Parent=Msa1200070-mRNA-1
chr8_1	CDS	52361477	52361957	52361477	ID=Msa1200070-mRNA-1:cds;Parent=Msa1200070-mRNA-1
chr8_1	three_prime_UTR	52360831	52361476	52360831	ID=Msa1200070-mRNA-1:three_prime_utr;Parent=Msa1200070-mRNA-1

Gene Sequence

>Msa1200070

ATGAGGCCACGCAGAGACAACGATAGAAACAACATCAATAACAGATTCAATTATTTCAATTCAAATTCCAACAATCTCGAAGAATCACCAAAATCACGTCGAAGAATCCCTTTTCTAAATAATCGCGTTTCGCTTTTAATGGCGGGACAATCACGGAAATGGATGATCCTTGTCGTTACGATATGGATTCAAGCATTTACAGGAACGAATTTCGATTTCTCTCAATATTCATCGTCGTTGAAATCTGCTCTTCAAATCTCACAGGTTCAGCTGAATTATTTGGCTACTGCGAATGATATGGGGAAGATTTTCGGTTGGTCTTCTGGTTTAGCTCTTATGCATCTTCCTGTTTCGGCTGTTATGTTCATTGCTGCGTTTATGGGGTTTCTTGGTTATGGGGTTCAATGGCTTCTCATTAATCATTTCATTTCTTTGCCTTATTTTCTGGTGTTCCTTCTGAGCCTTTTAAGTGGCTGCAGCATATGCTGGTTCAACACAGTATGTTTTATTCTCTGCATTAGGAATTTTCCAGTTAACCGAACACTTGCATTATCGCTCACTGTGAGTTTCAATGGTGTCAGTGCGGCCCTTTACACCCTTGCTGCAAATTCAATAGACCCATCATCTGACTCGTTGTATCTTCTTTTGAATGCTCTTGTTCCTCTTTTTGTTTGCATTGCAGCGACCATTCCAATTCTTCGCCAACCGCCTTTAGAACCTCTCCCTCCTGATGCAGTTAACCGGGACTCACTAGTATTTCTAATCTTGAACTTCTTAGCCATCTTCACTGGCCTTTATCTCCTCTTGTTTGGCTCATCTGCTTCTTCCATGGCTTCAGCCCGGCTCCACTTTGGTGGAACTGTTCTTCTCCTCATCCTCCCGTTGTTTATTCCTGGCATCGTATATGCTCGGGCTTGGGCTCAGCGTACCATCCATTCCAGCTTCCGGGTAGAAGGTTCCAGCATTATTCTTATTCATGATGATGATCTTGAGCTGCATAAAGAACTACTTAGCCGCCACAATAGTAGTATTGTTGGCAATGGAGATGGTTACAGTCTGCTAAGTGACAACGGATCCATGTTTTCAAGTCAGAAGGAAAGTGATAGTGATGTGTGTTGTGATAGGATGATTGGCCAGGATCACCTGACAATGCTAGGAGAAGAGCACTCGGCTGCGGTGATTGTCCGCAGATTAGACTTTTGGCTATACTACATCACATACTTCTGTGGAGGTACGATTGGTCTTGTCTATAGCAATAATCTGGGACAGATTGCTCAATCTCTCGGTCTGAAATCAAGTACTTCTACCCTTGTTACTCTCTACGCATCCTTTTCGTTTTTCGGCCGCTTGCTTTCAGCTGGACCGGACTATGTTCGTAGTAAGTTCTACTTTGCAAGAACTGGTTGGCTCTCCATTGCACTTATACCAACACCAATTGCGTTCTTCTTGCTTGCCGCATCAGACAGTTCTCTGGCACTGCATACTGGAACTGCACTAATTGGGTTGAGTTCTGGTTTCATATTTGCCGCTGCTGTTTCAGTTACATCTGAACTGTTTGGACCCAATAGTGTAGGTGTCAATCACAACATTCTCATAACAAATATCCCAATTGGTTCACTTCTCTATGGTTTTCTTGCTGCACTAGTTTATGATGCCCATGCACACTCAACACCGGGAAACTTGATAACGTCGGACTCAGTAGTTTGCATGGGAAGGCAATGCTACTTCTGGACATTTATCTGGTGGGGATGCACATCTGTCGTGGGACTGGGTTCTAGTACGCTGTTATTCCTAAGAACCAAATATGCGTATGAACATTTTGAGAACCACCGTATTTCAACGCAAGTTATTGTGCCTTAA

Protein sequence

>Msa1200070

MRPRRDNDRNNINNRFNYFNSNSNNLEESPKSRRRIPFLNNRVSLLMAGQSRKWMILVVTIWIQAFTGTNFDFSQYSSSLKSALQISQVQLNYLATANDMGKIFGWSSGLALMHLPVSAVMFIAAFMGFLGYGVQWLLINHFISLPYFLVFLLSLLSGCSICWFNTVCFILCIRNFPVNRTLALSLTVSFNGVSAALYTLAANSIDPSSDSLYLLLNALVPLFVCIAATIPILRQPPLEPLPPDAVNRDSLVFLILNFLAIFTGLYLLLFGSSASSMASARLHFGGTVLLLILPLFIPGIVYARAWAQRTIHSSFRVEGSSIILIHDDDLELHKELLSRHNSSIVGNGDGYSLLSDNGSMFSSQKESDSDVCCDRMIGQDHLTMLGEEHSAAVIVRRLDFWLYYITYFCGGTIGLVYSNNLGQIAQSLGLKSSTSTLVTLYASFSFFGRLLSAGPDYVRSKFYFARTGWLSIALIPTPIAFFLLAASDSSLALHTGTALIGLSSGFIFAAAVSVTSELFGPNSVGVNHNILITNIPIGSLLYGFLAALVYDAHAHSTPGNLITSDSVVCMGRQCYFWTFIWWGCTSVVGLGSSTLLFLRTKYAYEHFENHRISTQVIVP*