AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056910 MtrunA17_Chr1g0147511 98.291 234 2 1 1 234 1 232 6.32e-172 472
Msa0056910 MtrunA17_Chr3g0139261 84.211 228 36 0 1 228 1 228 4.38e-146 407
Msa0056910 MtrunA17_Chr1g0188581 71.730 237 64 2 1 234 1 237 5.40e-125 353
Msa0056910 MtrunA17_Chr6g0477471 67.521 234 74 1 1 234 1 232 1.73e-116 332
Msa0056910 MtrunA17_Chr6g0477661 58.772 228 92 1 1 228 1 226 1.32e-95 279
Msa0056910 MtrunA17_Chr6g0477681 56.744 215 93 0 1 215 1 215 1.68e-87 258
Msa0056910 MtrunA17_Chr5g0428761 37.281 228 136 2 5 226 3 229 1.15e-49 163
Msa0056910 MtrunA17_Chr8g0392461 37.864 206 123 2 8 213 6 206 6.96e-41 139
Msa0056910 MtrunA17_Chr7g0244961 37.963 216 131 1 7 222 43 255 3.51e-39 136
Msa0056910 MtrunA17_Chr2g0282971 34.286 175 107 3 40 212 1 169 3.10e-22 90.5
Msa0056910 MtrunA17_Chr8g0392481 45.122 82 45 0 7 88 6 87 6.77e-22 87.0
Msa0056910 MtrunA17_Chr8g0392471 32.515 163 103 3 52 213 93 249 1.39e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056910 AT4G31330.1 69.874 239 63 2 1 233 1 236 2.12e-124 352
Msa0056910 AT5G10580.3 68.880 241 64 2 1 230 1 241 2.49e-121 345
Msa0056910 AT5G10580.1 67.623 244 68 2 1 233 1 244 3.49e-120 342
Msa0056910 AT5G10580.4 67.623 244 68 2 1 233 1 244 3.49e-120 342
Msa0056910 AT5G10580.2 70.270 185 47 1 1 177 1 185 7.48e-95 276
Msa0056910 AT5G24790.1 59.167 240 91 4 1 233 1 240 6.67e-90 265
Msa0056910 AT5G24600.1 35.000 240 141 3 4 231 2 238 1.68e-46 155
Msa0056910 AT5G24600.2 36.036 222 128 2 4 213 2 221 4.97e-45 151
Msa0056910 AT3G18215.1 36.493 211 134 0 3 213 2 212 7.45e-45 150
Msa0056910 AT5G43180.1 36.889 225 127 3 9 218 8 232 1.53e-36 129
Msa0056910 AT5G46060.1 33.649 211 136 2 4 213 6 213 6.39e-22 91.3
Msa0056910 AT3G18215.2 34.286 140 92 0 74 213 1 140 5.47e-20 84.0

Find 59 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATATATATTTGAAATTT+TGG 0.097168 1_2:+12621771 Msa0056910:CDS
CCACTAAATGATGCAATTTA+TGG 0.137500 1_2:+12621595 Msa0056910:CDS
ATGCTAGTGGTCGTAGAAAT+TGG 0.222133 1_2:+12620405 Msa0056910:CDS
CTGGACTTCCTTTGTTGCTT+TGG 0.242448 1_2:+12621839 Msa0056910:CDS
AATTGAGGTTGTGGCCATTA+AGG 0.286915 1_2:-12621518 None:intergenic
ATGCTATTTGGATGTGATAT+TGG 0.304552 1_2:+12620292 Msa0056910:CDS
AATATAACAAACTACCTATT+AGG 0.319343 1_2:+12620243 Msa0056910:five_prime_UTR
TTAGCATTGGTTACCATGTT+TGG 0.319355 1_2:+12620333 Msa0056910:CDS
ATCACTAAGGAACACAATAA+TGG 0.320459 1_2:+12621489 Msa0056910:CDS
TGTGTTTAATTAAATATATA+TGG 0.324874 1_2:+12622004 Msa0056910:three_prime_UTR
CCATAAATTGCATCATTTAG+TGG 0.326808 1_2:-12621595 None:intergenic
TTGGTTACCATGTTTGGCTT+TGG 0.343248 1_2:+12620339 Msa0056910:CDS
CCATGTTTGGCTTTGGCATA+AGG 0.345477 1_2:+12620346 Msa0056910:CDS
GGAATGGAGGAAATGCTATT+TGG 0.349081 1_2:+12620280 Msa0056910:CDS
TCACTAAGGAACACAATAAT+GGG 0.357357 1_2:+12621490 Msa0056910:CDS
ACTTCTCTACTATATATATA+TGG 0.369119 1_2:-12620150 None:intergenic
GGATGTGATATTGGTTCCTT+TGG 0.381322 1_2:+12620301 Msa0056910:CDS
GAGCAAAGGAAAACCATAAC+AGG 0.393179 1_2:-12621871 None:intergenic
ATCTTTGTGTTTCTCCTAAT+AGG 0.395961 1_2:-12620257 None:intergenic
AAAATTTCAAATATATATTC+TGG 0.418167 1_2:-12621769 None:intergenic
TGGAGCACATGGTGAATTCA+TGG 0.428876 1_2:+12621615 Msa0056910:CDS
TTTCCTTTGCTCTCTTGCTA+TGG 0.429928 1_2:+12621882 Msa0056910:CDS
CAGCCACACACAACCATTGT+TGG 0.455340 1_2:+12620377 Msa0056910:CDS
AATATTGTGACTGCAATTGT+TGG 0.470712 1_2:+12622100 Msa0056910:three_prime_UTR
TGCTAGTGGTCGTAGAAATT+GGG 0.473756 1_2:+12620406 Msa0056910:CDS
TTTGTGTACACTAGTGGAAA+GGG 0.482848 1_2:+12621928 Msa0056910:CDS
TCTGGTGTCACAAGTGACAT+AGG 0.507387 1_2:-12621751 None:intergenic
TTGGCAATGCTAATTAGCAT+TGG 0.515120 1_2:+12620320 Msa0056910:CDS
AGTGACAAAAGAATGAGAAG+AGG 0.517572 1_2:-12621672 None:intergenic
ACATAGTAAAATTGAGGTTG+TGG 0.520784 1_2:-12621527 None:intergenic
GAATGTGAATGTGGATCAAA+AGG 0.525644 1_2:+12621957 Msa0056910:CDS
GGAGAAACACAAAGATGGAA+TGG 0.530549 1_2:+12620264 Msa0056910:exon
ACCTGAACATAGTAAAATTG+AGG 0.548897 1_2:-12621533 None:intergenic
TTGGGTTAATGCTATGATGA+AGG 0.554864 1_2:+12620424 Msa0056910:CDS
TCCTAGCTGTGCAATCACTA+AGG 0.556695 1_2:+12621476 Msa0056910:CDS
TATTAGGAGAAACACAAAGA+TGG 0.561176 1_2:+12620259 Msa0056910:exon
CCTTATGCCAAAGCCAAACA+TGG 0.572427 1_2:-12620346 None:intergenic
AAATCAAGATTGTAAAGCAC+AGG 0.577484 1_2:-12621907 None:intergenic
GAACCATAGCAAGAGAGCAA+AGG 0.582292 1_2:-12621885 None:intergenic
CTGGTGTCACAAGTGACATA+GGG 0.583728 1_2:-12621750 None:intergenic
TGGCATAAAGAGAGTACAAG+AGG 0.592813 1_2:+12620208 Msa0056910:five_prime_UTR
GGGAAAGATGAATGTGAATG+TGG 0.592947 1_2:+12621948 Msa0056910:CDS
TCCTTAGTGATTGCACAGCT+AGG 0.598866 1_2:-12621477 None:intergenic
GAAACACAAAGATGGAATGG+AGG 0.599964 1_2:+12620267 Msa0056910:exon
ATGAGAAGAGGAAAATTGTG+AGG 0.605718 1_2:-12621660 None:intergenic
ACAAGTGACATAGGGTCTTG+AGG 0.610415 1_2:-12621742 None:intergenic
ATATATATACAAAACAATTG+TGG 0.623220 1_2:+12622060 Msa0056910:three_prime_UTR
ACATCAATGAAAGATGAATG+TGG 0.624140 1_2:-12620098 None:intergenic
CATAAAGAGAGTACAAGAGG+AGG 0.628247 1_2:+12620211 Msa0056910:five_prime_UTR
ATATATATGGCAAATACCAA+CGG 0.639503 1_2:-12620137 None:intergenic
TGTGAATGTGGATCAAAAGG+AGG 0.642260 1_2:+12621960 Msa0056910:CDS
ATTGTTGGCATCAATGCTAG+TGG 0.645700 1_2:+12620392 Msa0056910:CDS
CACTAAGGAACACAATAATG+GGG 0.646915 1_2:+12621491 Msa0056910:CDS
ACTAGCATTGATGCCAACAA+TGG 0.649656 1_2:-12620390 None:intergenic
ATGCTAATTAGCATTGCCAA+AGG 0.660900 1_2:-12620317 None:intergenic
GAACACATATACATCGCCGT+TGG 0.668288 1_2:+12620121 Msa0056910:five_prime_UTR
GATGCAATTTATGGAGCACA+TGG 0.684664 1_2:+12621604 Msa0056910:CDS
ATGCCAACAATGGTTGTGTG+TGG 0.695851 1_2:-12620380 None:intergenic
ACTAAGGAACACAATAATGG+GGG 0.700456 1_2:+12621492 Msa0056910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATGAAAAGAAATATAAA+TGG - chr1_2:12620896-12620915 None:intergenic 10.0%
!!! GTTCTTTAATTTTTTATTTT+TGG + chr1_2:12621148-12621167 Msa0056910:intron 10.0%
!! TAATATATCTTCAAAATAAT+AGG + chr1_2:12621330-12621349 Msa0056910:intron 10.0%
!!! TCATATATAAGATTTTAAAA+GGG - chr1_2:12621419-12621438 None:intergenic 10.0%
!!! ATCATATATAAGATTTTAAA+AGG - chr1_2:12621420-12621439 None:intergenic 10.0%
!! AAAATTTCAAATATATATTC+TGG - chr1_2:12621772-12621791 None:intergenic 10.0%
!!! AGAATATATATTTGAAATTT+TGG + chr1_2:12621771-12621790 Msa0056910:CDS 10.0%
!! TGTGTTTAATTAAATATATA+TGG + chr1_2:12622004-12622023 Msa0056910:three_prime_UTR 10.0%
!! TAAATGAAAAGAAATATAAA+TGG - chr1_2:12620896-12620915 None:intergenic 10.0%
!!! GTTCTTTAATTTTTTATTTT+TGG + chr1_2:12621148-12621167 Msa0056910:intron 10.0%
!! TAATATATCTTCAAAATAAT+AGG + chr1_2:12621330-12621349 Msa0056910:intron 10.0%
!!! TCATATATAAGATTTTAAAA+GGG - chr1_2:12621419-12621438 None:intergenic 10.0%
!!! ATCATATATAAGATTTTAAA+AGG - chr1_2:12621420-12621439 None:intergenic 10.0%
!! AAAATTTCAAATATATATTC+TGG - chr1_2:12621772-12621791 None:intergenic 10.0%
!!! AGAATATATATTTGAAATTT+TGG + chr1_2:12621771-12621790 Msa0056910:CDS 10.0%
!! TGTGTTTAATTAAATATATA+TGG + chr1_2:12622004-12622023 Msa0056910:three_prime_UTR 10.0%
!! CATAATGATAAAGATTTATA+GGG - chr1_2:12620493-12620512 None:intergenic 15.0%
!! TCATAATGATAAAGATTTAT+AGG - chr1_2:12620494-12620513 None:intergenic 15.0%
!!! TTTTTTTTTTCATTTGAAGA+AGG - chr1_2:12620571-12620590 None:intergenic 15.0%
!!! AGAAATCATATATTTTATGA+TGG + chr1_2:12620631-12620650 Msa0056910:intron 15.0%
!!! GTATTTTATTGATTTTATGA+GGG + chr1_2:12620653-12620672 Msa0056910:intron 15.0%
!! TTTATTATTACATTAGTTAG+TGG - chr1_2:12621079-12621098 None:intergenic 15.0%
!! ATATATATACAAAACAATTG+TGG + chr1_2:12622060-12622079 Msa0056910:three_prime_UTR 15.0%
!! TAAAAATTCTACAAATTGAA+AGG + chr1_2:12622123-12622142 Msa0056910:three_prime_UTR 15.0%
!!! AAAAAAAAAAAAGTGTAAGA+TGG + chr1_2:12622190-12622209 Msa0056910:three_prime_UTR 15.0%
!! CATAATGATAAAGATTTATA+GGG - chr1_2:12620493-12620512 None:intergenic 15.0%
!! TCATAATGATAAAGATTTAT+AGG - chr1_2:12620494-12620513 None:intergenic 15.0%
!!! TTTTTTTTTTCATTTGAAGA+AGG - chr1_2:12620571-12620590 None:intergenic 15.0%
!!! AGAAATCATATATTTTATGA+TGG + chr1_2:12620631-12620650 Msa0056910:intron 15.0%
!!! GTATTTTATTGATTTTATGA+GGG + chr1_2:12620653-12620672 Msa0056910:intron 15.0%
!! TTTATTATTACATTAGTTAG+TGG - chr1_2:12621079-12621098 None:intergenic 15.0%
!! ATATATATACAAAACAATTG+TGG + chr1_2:12622060-12622079 Msa0056910:three_prime_UTR 15.0%
!! TAAAAATTCTACAAATTGAA+AGG + chr1_2:12622123-12622142 Msa0056910:three_prime_UTR 15.0%
!!! AAAAAAAAAAAAGTGTAAGA+TGG + chr1_2:12622190-12622209 Msa0056910:three_prime_UTR 15.0%
!! ACTTCTCTACTATATATATA+TGG - chr1_2:12620153-12620172 None:intergenic 20.0%
!! ATTAACTCCAAAAACAAAAT+TGG + chr1_2:12620182-12620201 Msa0056910:five_prime_UTR 20.0%
!! AATATAACAAACTACCTATT+AGG + chr1_2:12620243-12620262 Msa0056910:five_prime_UTR 20.0%
!!! GGTATTTTATTGATTTTATG+AGG + chr1_2:12620652-12620671 Msa0056910:intron 20.0%
!!! TTTTTCACTATCAAATTGTT+AGG + chr1_2:12620789-12620808 Msa0056910:intron 20.0%
!! TATATGGTATAAATACTCTA+TGG - chr1_2:12620862-12620881 None:intergenic 20.0%
!! AATGGAATATGCAATATATA+TGG - chr1_2:12620878-12620897 None:intergenic 20.0%
!!! ATATTTGAAATTTTGGAGAA+AGG + chr1_2:12621778-12621797 Msa0056910:CDS 20.0%
!! ACTTCTCTACTATATATATA+TGG - chr1_2:12620153-12620172 None:intergenic 20.0%
!! ATTAACTCCAAAAACAAAAT+TGG + chr1_2:12620182-12620201 Msa0056910:five_prime_UTR 20.0%
!! AATATAACAAACTACCTATT+AGG + chr1_2:12620243-12620262 Msa0056910:five_prime_UTR 20.0%
!!! GGTATTTTATTGATTTTATG+AGG + chr1_2:12620652-12620671 Msa0056910:intron 20.0%
!!! TTTTTCACTATCAAATTGTT+AGG + chr1_2:12620789-12620808 Msa0056910:intron 20.0%
!! TATATGGTATAAATACTCTA+TGG - chr1_2:12620862-12620881 None:intergenic 20.0%
!! AATGGAATATGCAATATATA+TGG - chr1_2:12620878-12620897 None:intergenic 20.0%
!!! ATATTTGAAATTTTGGAGAA+AGG + chr1_2:12621778-12621797 Msa0056910:CDS 20.0%
! ATATATATGGCAAATACCAA+CGG - chr1_2:12620140-12620159 None:intergenic 25.0%
!!! TTTATGAGGGTATTTTATGA+TGG + chr1_2:12620666-12620685 Msa0056910:intron 25.0%
! GCTTAAATTCTTCAACTATT+TGG + chr1_2:12620733-12620752 Msa0056910:intron 25.0%
! TGTCCTCAAATATACTAAAT+GGG - chr1_2:12620766-12620785 None:intergenic 25.0%
! ATGTCCTCAAATATACTAAA+TGG - chr1_2:12620767-12620786 None:intergenic 25.0%
! TGTACGAACAAGAATAAATT+AGG - chr1_2:12620925-12620944 None:intergenic 25.0%
! TCTGTCTAAATGGTATAATT+TGG + chr1_2:12620997-12621016 Msa0056910:intron 25.0%
!! ACGTTATTTATGATGATGTT+AGG + chr1_2:12621387-12621406 Msa0056910:intron 25.0%
! ATATATATGGCAAATACCAA+CGG - chr1_2:12620140-12620159 None:intergenic 25.0%
!!! TTTATGAGGGTATTTTATGA+TGG + chr1_2:12620666-12620685 Msa0056910:intron 25.0%
! GCTTAAATTCTTCAACTATT+TGG + chr1_2:12620733-12620752 Msa0056910:intron 25.0%
! TGTCCTCAAATATACTAAAT+GGG - chr1_2:12620766-12620785 None:intergenic 25.0%
! ATGTCCTCAAATATACTAAA+TGG - chr1_2:12620767-12620786 None:intergenic 25.0%
! TGTACGAACAAGAATAAATT+AGG - chr1_2:12620925-12620944 None:intergenic 25.0%
! TCTGTCTAAATGGTATAATT+TGG + chr1_2:12620997-12621016 Msa0056910:intron 25.0%
!! ACGTTATTTATGATGATGTT+AGG + chr1_2:12621387-12621406 Msa0056910:intron 25.0%
! TCCAAAAACAAAATTGGCTT+TGG + chr1_2:12620188-12620207 Msa0056910:five_prime_UTR 30.0%
ATCTTTGTGTTTCTCCTAAT+AGG - chr1_2:12620260-12620279 None:intergenic 30.0%
TATTAGGAGAAACACAAAGA+TGG + chr1_2:12620259-12620278 Msa0056910:exon 30.0%
! ATGCTATTTGGATGTGATAT+TGG + chr1_2:12620292-12620311 Msa0056910:CDS 30.0%
TGTCCCATTTAGTATATTTG+AGG + chr1_2:12620760-12620779 Msa0056910:intron 30.0%
TAGCTTATCTTGAACATCAA+TGG + chr1_2:12620824-12620843 Msa0056910:intron 30.0%
! TTCTTTTGTGTTTGGTTGTT+AGG - chr1_2:12620962-12620981 None:intergenic 30.0%
! GTTTTGCTTTCTTTTGTGTT+TGG - chr1_2:12620970-12620989 None:intergenic 30.0%
AACAGAATGTTCTGTCTAAA+TGG + chr1_2:12620987-12621006 Msa0056910:intron 30.0%
TTTGTACATGCACATTATCT+TGG - chr1_2:12621055-12621074 None:intergenic 30.0%
AGAGATTGAAAACTATGTCT+AGG - chr1_2:12621258-12621277 None:intergenic 30.0%
TCAAAATAATAGGTACCATG+AGG + chr1_2:12621340-12621359 Msa0056910:intron 30.0%
TGTCATAAGTTATAACCTCA+TGG - chr1_2:12621358-12621377 None:intergenic 30.0%
ATGATGTGTTTGAATATGAC+AGG + chr1_2:12621435-12621454 Msa0056910:intron 30.0%
ATCACTAAGGAACACAATAA+TGG + chr1_2:12621489-12621508 Msa0056910:CDS 30.0%
TCACTAAGGAACACAATAAT+GGG + chr1_2:12621490-12621509 Msa0056910:CDS 30.0%
ACATAGTAAAATTGAGGTTG+TGG - chr1_2:12621530-12621549 None:intergenic 30.0%
! ACCTCAATTTTACTATGTTC+AGG + chr1_2:12621532-12621551 Msa0056910:CDS 30.0%
ACCTGAACATAGTAAAATTG+AGG - chr1_2:12621536-12621555 None:intergenic 30.0%
CCATAAATTGCATCATTTAG+TGG - chr1_2:12621598-12621617 None:intergenic 30.0%
CCACTAAATGATGCAATTTA+TGG + chr1_2:12621595-12621614 Msa0056910:CDS 30.0%
! TTTTGAATGCAGTTGGAAAT+AGG + chr1_2:12621806-12621825 Msa0056910:CDS 30.0%
AAATCAAGATTGTAAAGCAC+AGG - chr1_2:12621910-12621929 None:intergenic 30.0%
AATATTGTGACTGCAATTGT+TGG + chr1_2:12622100-12622119 Msa0056910:three_prime_UTR 30.0%
! TCCAAAAACAAAATTGGCTT+TGG + chr1_2:12620188-12620207 Msa0056910:five_prime_UTR 30.0%
ATCTTTGTGTTTCTCCTAAT+AGG - chr1_2:12620260-12620279 None:intergenic 30.0%
TATTAGGAGAAACACAAAGA+TGG + chr1_2:12620259-12620278 Msa0056910:exon 30.0%
! ATGCTATTTGGATGTGATAT+TGG + chr1_2:12620292-12620311 Msa0056910:CDS 30.0%
TGTCCCATTTAGTATATTTG+AGG + chr1_2:12620760-12620779 Msa0056910:intron 30.0%
TAGCTTATCTTGAACATCAA+TGG + chr1_2:12620824-12620843 Msa0056910:intron 30.0%
! TTCTTTTGTGTTTGGTTGTT+AGG - chr1_2:12620962-12620981 None:intergenic 30.0%
! GTTTTGCTTTCTTTTGTGTT+TGG - chr1_2:12620970-12620989 None:intergenic 30.0%
AACAGAATGTTCTGTCTAAA+TGG + chr1_2:12620987-12621006 Msa0056910:intron 30.0%
TTTGTACATGCACATTATCT+TGG - chr1_2:12621055-12621074 None:intergenic 30.0%
AGAGATTGAAAACTATGTCT+AGG - chr1_2:12621258-12621277 None:intergenic 30.0%
TCAAAATAATAGGTACCATG+AGG + chr1_2:12621340-12621359 Msa0056910:intron 30.0%
TGTCATAAGTTATAACCTCA+TGG - chr1_2:12621358-12621377 None:intergenic 30.0%
ATGATGTGTTTGAATATGAC+AGG + chr1_2:12621435-12621454 Msa0056910:intron 30.0%
ATCACTAAGGAACACAATAA+TGG + chr1_2:12621489-12621508 Msa0056910:CDS 30.0%
TCACTAAGGAACACAATAAT+GGG + chr1_2:12621490-12621509 Msa0056910:CDS 30.0%
ACATAGTAAAATTGAGGTTG+TGG - chr1_2:12621530-12621549 None:intergenic 30.0%
! ACCTCAATTTTACTATGTTC+AGG + chr1_2:12621532-12621551 Msa0056910:CDS 30.0%
ACCTGAACATAGTAAAATTG+AGG - chr1_2:12621536-12621555 None:intergenic 30.0%
CCATAAATTGCATCATTTAG+TGG - chr1_2:12621598-12621617 None:intergenic 30.0%
CCACTAAATGATGCAATTTA+TGG + chr1_2:12621595-12621614 Msa0056910:CDS 30.0%
! TTTTGAATGCAGTTGGAAAT+AGG + chr1_2:12621806-12621825 Msa0056910:CDS 30.0%
AAATCAAGATTGTAAAGCAC+AGG - chr1_2:12621910-12621929 None:intergenic 30.0%
AATATTGTGACTGCAATTGT+TGG + chr1_2:12622100-12622119 Msa0056910:three_prime_UTR 30.0%
!!! GCCAAAGCCAATTTTGTTTT+TGG - chr1_2:12620192-12620211 None:intergenic 35.0%
ATGCTAATTAGCATTGCCAA+AGG - chr1_2:12620320-12620339 None:intergenic 35.0%
TTGGCAATGCTAATTAGCAT+TGG + chr1_2:12620320-12620339 Msa0056910:CDS 35.0%
!! TTAGCATTGGTTACCATGTT+TGG + chr1_2:12620333-12620352 Msa0056910:CDS 35.0%
TTGGGTTAATGCTATGATGA+AGG + chr1_2:12620424-12620443 Msa0056910:CDS 35.0%
! TTCATTTGAAGAAGGTGTGA+GGG - chr1_2:12620563-12620582 None:intergenic 35.0%
! TTTCATTTGAAGAAGGTGTG+AGG - chr1_2:12620564-12620583 None:intergenic 35.0%
! TGTCGTGTTGATATGTCATT+TGG - chr1_2:12621214-12621233 None:intergenic 35.0%
TGAAAACTATGTCTAGGTAG+TGG - chr1_2:12621252-12621271 None:intergenic 35.0%
CACTAAGGAACACAATAATG+GGG + chr1_2:12621491-12621510 Msa0056910:CDS 35.0%
ACTAAGGAACACAATAATGG+GGG + chr1_2:12621492-12621511 Msa0056910:CDS 35.0%
ATGAGAAGAGGAAAATTGTG+AGG - chr1_2:12621663-12621682 None:intergenic 35.0%
AGTGACAAAAGAATGAGAAG+AGG - chr1_2:12621675-12621694 None:intergenic 35.0%
! GGTTTCATTTTGAATGCAGT+TGG + chr1_2:12621799-12621818 Msa0056910:CDS 35.0%
CCAAAAATCCAAAGCAACAA+AGG - chr1_2:12621850-12621869 None:intergenic 35.0%
!!! CCTTTGTTGCTTTGGATTTT+TGG + chr1_2:12621847-12621866 Msa0056910:CDS 35.0%
!!! TTGGATTTTTGGTCCTGTTA+TGG + chr1_2:12621858-12621877 Msa0056910:CDS 35.0%
! CTTGATTTTGTGTACACTAG+TGG + chr1_2:12621922-12621941 Msa0056910:CDS 35.0%
! TTTTGTGTACACTAGTGGAA+AGG + chr1_2:12621927-12621946 Msa0056910:CDS 35.0%
TTTGTGTACACTAGTGGAAA+GGG + chr1_2:12621928-12621947 Msa0056910:CDS 35.0%
GAATGTGAATGTGGATCAAA+AGG + chr1_2:12621957-12621976 Msa0056910:CDS 35.0%
!!! GCCAAAGCCAATTTTGTTTT+TGG - chr1_2:12620192-12620211 None:intergenic 35.0%
ATGCTAATTAGCATTGCCAA+AGG - chr1_2:12620320-12620339 None:intergenic 35.0%
TTGGCAATGCTAATTAGCAT+TGG + chr1_2:12620320-12620339 Msa0056910:CDS 35.0%
!! TTAGCATTGGTTACCATGTT+TGG + chr1_2:12620333-12620352 Msa0056910:CDS 35.0%
TTGGGTTAATGCTATGATGA+AGG + chr1_2:12620424-12620443 Msa0056910:CDS 35.0%
! TTCATTTGAAGAAGGTGTGA+GGG - chr1_2:12620563-12620582 None:intergenic 35.0%
! TTTCATTTGAAGAAGGTGTG+AGG - chr1_2:12620564-12620583 None:intergenic 35.0%
! TGTCGTGTTGATATGTCATT+TGG - chr1_2:12621214-12621233 None:intergenic 35.0%
TGAAAACTATGTCTAGGTAG+TGG - chr1_2:12621252-12621271 None:intergenic 35.0%
CACTAAGGAACACAATAATG+GGG + chr1_2:12621491-12621510 Msa0056910:CDS 35.0%
ACTAAGGAACACAATAATGG+GGG + chr1_2:12621492-12621511 Msa0056910:CDS 35.0%
ATGAGAAGAGGAAAATTGTG+AGG - chr1_2:12621663-12621682 None:intergenic 35.0%
AGTGACAAAAGAATGAGAAG+AGG - chr1_2:12621675-12621694 None:intergenic 35.0%
! GGTTTCATTTTGAATGCAGT+TGG + chr1_2:12621799-12621818 Msa0056910:CDS 35.0%
CCAAAAATCCAAAGCAACAA+AGG - chr1_2:12621850-12621869 None:intergenic 35.0%
!!! CCTTTGTTGCTTTGGATTTT+TGG + chr1_2:12621847-12621866 Msa0056910:CDS 35.0%
!!! TTGGATTTTTGGTCCTGTTA+TGG + chr1_2:12621858-12621877 Msa0056910:CDS 35.0%
! CTTGATTTTGTGTACACTAG+TGG + chr1_2:12621922-12621941 Msa0056910:CDS 35.0%
! TTTTGTGTACACTAGTGGAA+AGG + chr1_2:12621927-12621946 Msa0056910:CDS 35.0%
TTTGTGTACACTAGTGGAAA+GGG + chr1_2:12621928-12621947 Msa0056910:CDS 35.0%
GAATGTGAATGTGGATCAAA+AGG + chr1_2:12621957-12621976 Msa0056910:CDS 35.0%
! TGGCATAAAGAGAGTACAAG+AGG + chr1_2:12620208-12620227 Msa0056910:five_prime_UTR 40.0%
! CATAAAGAGAGTACAAGAGG+AGG + chr1_2:12620211-12620230 Msa0056910:five_prime_UTR 40.0%
GGAGAAACACAAAGATGGAA+TGG + chr1_2:12620264-12620283 Msa0056910:exon 40.0%
GAAACACAAAGATGGAATGG+AGG + chr1_2:12620267-12620286 Msa0056910:exon 40.0%
GGAATGGAGGAAATGCTATT+TGG + chr1_2:12620280-12620299 Msa0056910:CDS 40.0%
!! GGATGTGATATTGGTTCCTT+TGG + chr1_2:12620301-12620320 Msa0056910:CDS 40.0%
! TTGGTTACCATGTTTGGCTT+TGG + chr1_2:12620339-12620358 Msa0056910:CDS 40.0%
!! ACTAGCATTGATGCCAACAA+TGG - chr1_2:12620393-12620412 None:intergenic 40.0%
ATTGTTGGCATCAATGCTAG+TGG + chr1_2:12620392-12620411 Msa0056910:CDS 40.0%
ATGCTAGTGGTCGTAGAAAT+TGG + chr1_2:12620405-12620424 Msa0056910:CDS 40.0%
TGCTAGTGGTCGTAGAAATT+GGG + chr1_2:12620406-12620425 Msa0056910:CDS 40.0%
! TCATTTGAAGAAGGTGTGAG+GGG - chr1_2:12620562-12620581 None:intergenic 40.0%
TGGTGAATATCCTATTCGAG+TGG + chr1_2:12621017-12621036 Msa0056910:intron 40.0%
GGTGAATATCCTATTCGAGT+GGG + chr1_2:12621018-12621037 Msa0056910:intron 40.0%
! AATAATGGGGGCAACCTTAA+TGG + chr1_2:12621504-12621523 Msa0056910:CDS 40.0%
AATTGAGGTTGTGGCCATTA+AGG - chr1_2:12621521-12621540 None:intergenic 40.0%
GATGCAATTTATGGAGCACA+TGG + chr1_2:12621604-12621623 Msa0056910:CDS 40.0%
! GGAAATAGGCTTTTCTATGC+TGG + chr1_2:12621820-12621839 Msa0056910:CDS 40.0%
GAGCAAAGGAAAACCATAAC+AGG - chr1_2:12621874-12621893 None:intergenic 40.0%
TTTCCTTTGCTCTCTTGCTA+TGG + chr1_2:12621882-12621901 Msa0056910:CDS 40.0%
GGGAAAGATGAATGTGAATG+TGG + chr1_2:12621948-12621967 Msa0056910:CDS 40.0%
TGTGAATGTGGATCAAAAGG+AGG + chr1_2:12621960-12621979 Msa0056910:CDS 40.0%
! TGGCATAAAGAGAGTACAAG+AGG + chr1_2:12620208-12620227 Msa0056910:five_prime_UTR 40.0%
! CATAAAGAGAGTACAAGAGG+AGG + chr1_2:12620211-12620230 Msa0056910:five_prime_UTR 40.0%
GGAGAAACACAAAGATGGAA+TGG + chr1_2:12620264-12620283 Msa0056910:exon 40.0%
GAAACACAAAGATGGAATGG+AGG + chr1_2:12620267-12620286 Msa0056910:exon 40.0%
GGAATGGAGGAAATGCTATT+TGG + chr1_2:12620280-12620299 Msa0056910:CDS 40.0%
!! GGATGTGATATTGGTTCCTT+TGG + chr1_2:12620301-12620320 Msa0056910:CDS 40.0%
! TTGGTTACCATGTTTGGCTT+TGG + chr1_2:12620339-12620358 Msa0056910:CDS 40.0%
!! ACTAGCATTGATGCCAACAA+TGG - chr1_2:12620393-12620412 None:intergenic 40.0%
ATTGTTGGCATCAATGCTAG+TGG + chr1_2:12620392-12620411 Msa0056910:CDS 40.0%
ATGCTAGTGGTCGTAGAAAT+TGG + chr1_2:12620405-12620424 Msa0056910:CDS 40.0%
TGCTAGTGGTCGTAGAAATT+GGG + chr1_2:12620406-12620425 Msa0056910:CDS 40.0%
! TCATTTGAAGAAGGTGTGAG+GGG - chr1_2:12620562-12620581 None:intergenic 40.0%
TGGTGAATATCCTATTCGAG+TGG + chr1_2:12621017-12621036 Msa0056910:intron 40.0%
GGTGAATATCCTATTCGAGT+GGG + chr1_2:12621018-12621037 Msa0056910:intron 40.0%
! AATAATGGGGGCAACCTTAA+TGG + chr1_2:12621504-12621523 Msa0056910:CDS 40.0%
AATTGAGGTTGTGGCCATTA+AGG - chr1_2:12621521-12621540 None:intergenic 40.0%
GATGCAATTTATGGAGCACA+TGG + chr1_2:12621604-12621623 Msa0056910:CDS 40.0%
! GGAAATAGGCTTTTCTATGC+TGG + chr1_2:12621820-12621839 Msa0056910:CDS 40.0%
GAGCAAAGGAAAACCATAAC+AGG - chr1_2:12621874-12621893 None:intergenic 40.0%
TTTCCTTTGCTCTCTTGCTA+TGG + chr1_2:12621882-12621901 Msa0056910:CDS 40.0%
GGGAAAGATGAATGTGAATG+TGG + chr1_2:12621948-12621967 Msa0056910:CDS 40.0%
TGTGAATGTGGATCAAAAGG+AGG + chr1_2:12621960-12621979 Msa0056910:CDS 40.0%
GAACACATATACATCGCCGT+TGG + chr1_2:12620121-12620140 Msa0056910:five_prime_UTR 45.0%
CCTTATGCCAAAGCCAAACA+TGG - chr1_2:12620349-12620368 None:intergenic 45.0%
!! CCATGTTTGGCTTTGGCATA+AGG + chr1_2:12620346-12620365 Msa0056910:CDS 45.0%
ATGCCAACAATGGTTGTGTG+TGG - chr1_2:12620383-12620402 None:intergenic 45.0%
! CATTTGAAGAAGGTGTGAGG+GGG - chr1_2:12620561-12620580 None:intergenic 45.0%
TAACAACGACCCACTCGAAT+AGG - chr1_2:12621030-12621049 None:intergenic 45.0%
TCCTAGCTGTGCAATCACTA+AGG + chr1_2:12621476-12621495 Msa0056910:CDS 45.0%
TCCTTAGTGATTGCACAGCT+AGG - chr1_2:12621480-12621499 None:intergenic 45.0%
TGGAGCACATGGTGAATTCA+TGG + chr1_2:12621615-12621634 Msa0056910:CDS 45.0%
ACAAGTGACATAGGGTCTTG+AGG - chr1_2:12621745-12621764 None:intergenic 45.0%
!! CTGGTGTCACAAGTGACATA+GGG - chr1_2:12621753-12621772 None:intergenic 45.0%
!! TCTGGTGTCACAAGTGACAT+AGG - chr1_2:12621754-12621773 None:intergenic 45.0%
! CTGGACTTCCTTTGTTGCTT+TGG + chr1_2:12621839-12621858 Msa0056910:CDS 45.0%
GAACCATAGCAAGAGAGCAA+AGG - chr1_2:12621888-12621907 None:intergenic 45.0%
GAACACATATACATCGCCGT+TGG + chr1_2:12620121-12620140 Msa0056910:five_prime_UTR 45.0%
CCTTATGCCAAAGCCAAACA+TGG - chr1_2:12620349-12620368 None:intergenic 45.0%
!! CCATGTTTGGCTTTGGCATA+AGG + chr1_2:12620346-12620365 Msa0056910:CDS 45.0%
ATGCCAACAATGGTTGTGTG+TGG - chr1_2:12620383-12620402 None:intergenic 45.0%
! CATTTGAAGAAGGTGTGAGG+GGG - chr1_2:12620561-12620580 None:intergenic 45.0%
TAACAACGACCCACTCGAAT+AGG - chr1_2:12621030-12621049 None:intergenic 45.0%
TCCTAGCTGTGCAATCACTA+AGG + chr1_2:12621476-12621495 Msa0056910:CDS 45.0%
TCCTTAGTGATTGCACAGCT+AGG - chr1_2:12621480-12621499 None:intergenic 45.0%
TGGAGCACATGGTGAATTCA+TGG + chr1_2:12621615-12621634 Msa0056910:CDS 45.0%
ACAAGTGACATAGGGTCTTG+AGG - chr1_2:12621745-12621764 None:intergenic 45.0%
!! CTGGTGTCACAAGTGACATA+GGG - chr1_2:12621753-12621772 None:intergenic 45.0%
!! TCTGGTGTCACAAGTGACAT+AGG - chr1_2:12621754-12621773 None:intergenic 45.0%
! CTGGACTTCCTTTGTTGCTT+TGG + chr1_2:12621839-12621858 Msa0056910:CDS 45.0%
GAACCATAGCAAGAGAGCAA+AGG - chr1_2:12621888-12621907 None:intergenic 45.0%
!! ATGTAATAATAAAAATTTAA+AGG + chr1_2:12621086-12621105 Msa0056910:intron 5.0%
!! ATGTAATAATAAAAATTTAA+AGG + chr1_2:12621086-12621105 Msa0056910:intron 5.0%
CAGCCACACACAACCATTGT+TGG + chr1_2:12620377-12620396 Msa0056910:CDS 50.0%
CAGCCACACACAACCATTGT+TGG + chr1_2:12620377-12620396 Msa0056910:CDS 50.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 12620100 12622285 12620100 ID=Msa0056910;Name=Msa0056910
chr1_2 mRNA 12620100 12622285 12620100 ID=Msa0056910-mRNA-1;Parent=Msa0056910;Name=Msa0056910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=178|1|1|1|1|1|2|292|234
chr1_2 exon 12620100 12620445 12620100 ID=Msa0056910-mRNA-1:exon:4912;Parent=Msa0056910-mRNA-1
chr1_2 exon 12621457 12622285 12621457 ID=Msa0056910-mRNA-1:exon:4913;Parent=Msa0056910-mRNA-1
chr1_2 five_prime_UTR 12620100 12620277 12620100 ID=Msa0056910-mRNA-1:five_prime_utr;Parent=Msa0056910-mRNA-1
chr1_2 CDS 12620278 12620445 12620278 ID=Msa0056910-mRNA-1:cds;Parent=Msa0056910-mRNA-1
chr1_2 CDS 12621457 12621993 12621457 ID=Msa0056910-mRNA-1:cds;Parent=Msa0056910-mRNA-1
chr1_2 three_prime_UTR 12621994 12622285 12621994 ID=Msa0056910-mRNA-1:three_prime_utr;Parent=Msa0056910-mRNA-1
Gene Sequence

>Msa0056910

ATGGAATGGAGGAAATGCTATTTGGATGTGATATTGGTTCCTTTGGCAATGCTAATTAGCATTGGTTACCATGTTTGGCTTTGGCATAAGGTTAGAACTCAGCCACACACAACCATTGTTGGCATCAATGCTAGTGGTCGTAGAAATTGGGTTAATGCTATGATGAAGGACAATGAAAAGAAAAACATCCTAGCTGTGCAATCACTAAGGAACACAATAATGGGGGCAACCTTAATGGCCACAACCTCAATTTTACTATGTTCAGGTCTAGCAGCAGTTATAAGCAGCACATATAGTGTGAAGAAGCCACTAAATGATGCAATTTATGGAGCACATGGTGAATTCATGGTTGCACTAAAATATGTCTCACTCCTCACAATTTTCCTCTTCTCATTCTTTTGTCACTCTCTTGCAATAAGATTTATTAATCAAGTGAACATTTTAATCAACACTCCTCAAGACCCTATGTCACTTGTGACACCAGAATATATATTTGAAATTTTGGAGAAAGGTTTCATTTTGAATGCAGTTGGAAATAGGCTTTTCTATGCTGGACTTCCTTTGTTGCTTTGGATTTTTGGTCCTGTTATGGTTTTCCTTTGCTCTCTTGCTATGGTTCCTGTGCTTTACAATCTTGATTTTGTGTACACTAGTGGAAAGGGAAAGATGAATGTGAATGTGGATCAAAAGGAGGATTATGTTTGA

Protein sequence

>Msa0056910

MEWRKCYLDVILVPLAMLISIGYHVWLWHKVRTQPHTTIVGINASGRRNWVNAMMKDNEKKNILAVQSLRNTIMGATLMATTSILLCSGLAAVISSTYSVKKPLNDAIYGAHGEFMVALKYVSLLTIFLFSFFCHSLAIRFINQVNILINTPQDPMSLVTPEYIFEILEKGFILNAVGNRLFYAGLPLLLWIFGPVMVFLCSLAMVPVLYNLDFVYTSGKGKMNVNVDQKEDYV*