AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1329090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329090 MtrunA17_Chr8g0369621 97.254 619 12 2 1 619 1 614 0.0 1206
Msa1329090 MtrunA17_Chr5g0408921 74.435 575 141 4 47 618 1 572 0.0 850
Msa1329090 MtrunA17_Chr7g0251871 57.840 574 226 3 47 616 1 562 0.0 624
Msa1329090 MtrunA17_Chr3g0106801 37.719 570 291 16 47 606 1 516 4.54e-100 314
Msa1329090 MtrunA17_Chr4g0037301 32.746 568 325 15 51 606 13 535 7.22e-80 262
Msa1329090 MtrunA17_Chr5g0405621 31.818 572 337 14 51 616 11 535 6.91e-71 238
Msa1329090 MtrunA17_Chr4g0064981 28.130 583 365 16 48 605 6 559 2.95e-52 189
Msa1329090 MtrunA17_Chr2g0304561 27.682 578 378 15 43 605 1 553 9.28e-52 187
Msa1329090 MtrunA17_Chr3g0106821 44.000 225 118 5 47 269 1 219 8.61e-50 177
Msa1329090 MtrunA17_Chr3g0106821 44.792 96 46 2 362 457 285 373 1.99e-16 81.6
Msa1329090 MtrunA17_Chr1g0210274 23.569 594 405 13 39 617 12 571 3.09e-25 110
Msa1329090 MtrunA17_Chr1g0210291 24.207 599 395 18 39 618 11 569 7.86e-25 109
Msa1329090 MtrunA17_Chr7g0264861 23.438 576 397 15 53 611 29 577 1.43e-24 108
Msa1329090 MtrunA17_Chr1g0174101 23.199 569 384 15 53 605 24 555 1.98e-23 104
Msa1329090 MtrunA17_Chr1g0210284 23.529 595 404 14 39 617 12 571 2.24e-23 104
Msa1329090 MtrunA17_Chr3g0106831 42.105 133 67 2 474 606 1 123 3.52e-23 95.1
Msa1329090 MtrunA17_Chr1g0171591 24.779 565 389 16 53 605 24 564 2.46e-21 98.2
Msa1329090 MtrunA17_Chr5g0442481 30.088 226 139 7 395 613 319 532 3.22e-20 94.7
Msa1329090 MtrunA17_Chr7g0225191 29.545 176 123 1 53 227 15 190 4.31e-19 91.3
Msa1329090 MtrunA17_Chr7g0225191 26.592 267 153 9 364 604 327 576 7.48e-14 74.7
Msa1329090 MtrunA17_Chr2g0330551 22.298 583 367 16 51 605 5 529 6.16e-18 87.4
Msa1329090 MtrunA17_Chr3g0132161 27.586 174 125 1 52 224 14 187 1.52e-17 86.3
Msa1329090 MtrunA17_Chr3g0132161 26.939 245 148 7 386 606 318 555 9.04e-13 71.2
Msa1329090 MtrunA17_Chr2g0333371 26.000 250 143 7 361 605 77 289 2.39e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329090 AT4G19450.1 69.739 575 163 4 47 616 1 569 0.0 776
Msa1329090 AT5G45275.1 69.151 577 163 4 47 617 1 568 0.0 771
Msa1329090 AT1G31470.1 56.149 618 219 12 1 613 1 571 0.0 593
Msa1329090 AT4G19450.2 69.212 419 119 3 47 460 1 414 0.0 570
Msa1329090 AT3G01630.2 50.264 569 236 8 52 612 40 569 0.0 528
Msa1329090 AT3G01630.1 50.264 569 236 8 52 612 22 551 0.0 527
Msa1329090 AT2G30300.1 34.507 568 289 15 51 606 2 498 1.03e-81 266
Msa1329090 AT4G34950.1 30.488 574 360 13 53 615 16 561 4.78e-80 264
Msa1329090 AT2G16660.1 30.824 558 342 11 53 606 14 531 2.94e-68 232
Msa1329090 AT1G80530.1 29.412 578 347 20 48 605 8 544 4.54e-50 182
Msa1329090 AT2G16660.2 29.529 403 248 7 53 453 14 382 8.82e-45 164
Msa1329090 AT5G50630.1 25.874 572 364 16 53 613 16 538 3.81e-41 157
Msa1329090 AT5G50520.1 25.874 572 364 16 53 613 16 538 3.81e-41 157
Msa1329090 AT3G01930.2 25.525 619 373 20 32 607 5 578 2.49e-32 132
Msa1329090 AT2G28120.1 24.573 586 387 14 53 619 17 566 3.71e-31 129
Msa1329090 AT5G14120.1 24.960 621 374 20 29 607 3 573 1.09e-29 124
Msa1329090 AT2G39210.1 24.096 581 368 15 53 605 21 556 1.74e-27 117
Msa1329090 AT1G74780.1 25.546 595 337 19 53 612 7 530 1.49e-24 108
Msa1329090 AT1G18940.1 23.077 585 356 18 53 611 9 525 3.45e-22 100
Msa1329090 AT3G01930.3 24.289 457 265 14 32 450 5 418 7.67e-18 87.0
Msa1329090 AT3G01930.1 30.804 224 147 7 386 604 242 462 9.19e-16 80.9
Msa1329090 AT2G34355.2 27.311 238 153 7 380 611 147 370 4.47e-14 74.7
Msa1329090 AT2G34355.1 27.311 238 153 7 380 611 297 520 2.04e-13 73.6
Msa1329090 AT2G34355.1 28.571 196 122 5 53 234 7 198 1.58e-12 70.9
Msa1329090 AT2G34350.1 27.149 221 141 7 399 612 316 523 6.23e-11 65.9
Msa1329090 AT2G34350.2 27.149 221 141 7 399 612 316 523 6.23e-11 65.9

Find 177 sgRNAs with CRISPR-Local

Find 437 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATACGCATATTTGGTTCTT+AGG 0.141019 8_4:+47256553 None:intergenic
AAAAGAAAATATAAGGTAAA+TGG 0.172313 8_4:+47256016 None:intergenic
TTAGCTCAATTCTGTAATTT+AGG 0.173622 8_4:-47255953 Msa1329090:three_prime_UTR
CATACTGGAACTGCACTAAT+TGG 0.178376 8_4:-47256864 Msa1329090:CDS
ACAGGTTCAGCTGAATTATT+TGG 0.198808 8_4:-47262172 Msa1329090:CDS
GGGATTCTTCGACGTGATTT+TGG 0.202196 8_4:+47262345 None:intergenic
AAAATGTTCATACGCATATT+TGG 0.223002 8_4:+47256545 None:intergenic
TTTATGGGGTTTCTTGGTTA+TGG 0.244452 8_4:-47262057 Msa1329090:CDS
TTAAAGATCTCCAAAGAATA+TGG 0.254801 8_4:-47256050 Msa1329090:three_prime_UTR
ATCCTCCCGTTGTTTATTCC+TGG 0.257241 8_4:-47258140 Msa1329090:CDS
AATGCAAGTGTTCGGTTAAC+TGG 0.257319 8_4:+47258485 None:intergenic
TTTGGCTACTGCGAATGATA+TGG 0.259524 8_4:-47262154 Msa1329090:CDS
TACTTGTTCCCCATATTCTT+TGG 0.266975 8_4:+47256040 None:intergenic
GCTGCGTTTATGGGGTTTCT+TGG 0.267875 8_4:-47262063 Msa1329090:CDS
TATGTTCATTGCTGCGTTTA+TGG 0.279774 8_4:-47262073 Msa1329090:CDS
GCTACTTCTGGACATTTATC+TGG 0.290729 8_4:-47256623 Msa1329090:CDS
ATGCACATCTGTCGTGGGAC+TGG 0.294070 8_4:-47256595 Msa1329090:CDS
ATGTTCATTGCTGCGTTTAT+GGG 0.297607 8_4:-47262072 Msa1329090:CDS
GGCCTTTATCTCCTCTTGTT+TGG 0.298637 8_4:-47258224 Msa1329090:CDS
CCAATTGGTTCACTTCTCTA+TGG 0.300390 8_4:-47256738 Msa1329090:CDS
TTATGGGGTTTCTTGGTTAT+GGG 0.302178 8_4:-47262056 Msa1329090:CDS
TGATCCTTGTCGTTACGATA+TGG 0.305772 8_4:-47262269 Msa1329090:CDS
GCACTAATTGGGTTGAGTTC+TGG 0.305871 8_4:-47256852 Msa1329090:CDS
ATATGCTGCAGCCACTTAAA+AGG 0.309934 8_4:+47258552 None:intergenic
TTCTTGGTTATGGGGTTCAA+TGG 0.314531 8_4:-47262047 Msa1329090:CDS
TCTTGTCTATAGCAATAATC+TGG 0.318485 8_4:-47257772 Msa1329090:CDS
TCTTATGCATCTTCCTGTTT+CGG 0.328486 8_4:-47262100 Msa1329090:CDS
GTGATTGACACCTACACTAT+TGG 0.333681 8_4:+47256782 None:intergenic
GCATCGTATATGCTCGGGCT+TGG 0.337481 8_4:-47258118 Msa1329090:CDS
TTGTCCGCAGATTAGACTTT+TGG 0.338323 8_4:-47257833 Msa1329090:CDS
TGGGAAGGCAATGCTACTTC+TGG 0.346076 8_4:-47256635 Msa1329090:CDS
AATGAAATTACCAGAAAATA+AGG 0.347014 8_4:+47261997 None:intergenic
GAAGTTCTGCAGCCATGATT+TGG 0.349743 8_4:-47256217 Msa1329090:three_prime_UTR
TCCCTCCTGATGCAGTTAAC+CGG 0.355666 8_4:-47258292 Msa1329090:CDS
TTCGGCCGCTTGCTTTCAGC+TGG 0.355741 8_4:-47257675 Msa1329090:CDS
AGAATGGCGCGTGGTCCTTC+TGG 0.358299 8_4:-47256239 Msa1329090:three_prime_UTR
ATATGGATTCAAGCATTTAC+AGG 0.358707 8_4:-47262252 Msa1329090:CDS
CATTCCAGCTTCCGGGTAGA+AGG 0.361167 8_4:-47258080 Msa1329090:CDS
GTACCATCCATTCCAGCTTC+CGG 0.370296 8_4:-47258088 Msa1329090:CDS
TACCATCCATTCCAGCTTCC+GGG 0.374160 8_4:-47258087 Msa1329090:CDS
TGATTGACACCTACACTATT+GGG 0.378355 8_4:+47256783 None:intergenic
AAAGGCGGTTGGCGAAGAAT+TGG 0.382733 8_4:+47258323 None:intergenic
TCATAAGATGGCAGCATCAT+TGG 0.383463 8_4:+47256122 None:intergenic
AAGTTCTACTTTGCAAGAAC+TGG 0.383683 8_4:-47256963 Msa1329090:CDS
TGTAGCGTTATATCGTAAAT+AGG 0.386816 8_4:-47256393 Msa1329090:three_prime_UTR
TTATGCTTTGACCTTGTTTG+AGG 0.398195 8_4:-47256155 Msa1329090:three_prime_UTR
CATCGTATATGCTCGGGCTT+GGG 0.400293 8_4:-47258117 Msa1329090:CDS
TGACCTTGTTTGAGGCATGC+TGG 0.401606 8_4:-47256147 Msa1329090:three_prime_UTR
GAAACGCGATTATTTAGAAA+AGG 0.402788 8_4:+47262324 None:intergenic
CGCCACAATAGTAGTATTGT+TGG 0.404050 8_4:-47257999 Msa1329090:CDS
AAAGAAAATATAAGGTAAAT+GGG 0.404971 8_4:+47256017 None:intergenic
TGGCTCATCTGCTTCTTCCA+TGG 0.405420 8_4:-47258204 Msa1329090:CDS
TCAGTTACATCTGAACTGTT+TGG 0.405794 8_4:-47256807 Msa1329090:CDS
TGCACATCTGTCGTGGGACT+GGG 0.410614 8_4:-47256594 Msa1329090:CDS
TTGGCTACTGCGAATGATAT+GGG 0.415609 8_4:-47262153 Msa1329090:CDS
TGGCGGGACAATCACGGAAA+TGG 0.415819 8_4:-47262293 Msa1329090:CDS
AGTTCTCTGGCACTGCATAC+TGG 0.416672 8_4:-47256879 Msa1329090:CDS
TAAAGATCTCCAAAGAATAT+GGG 0.418057 8_4:-47256049 Msa1329090:three_prime_UTR
CTCATAACAAATATCCCAAT+TGG 0.420713 8_4:-47256753 Msa1329090:CDS
CTAGCATTGTCAGGTGATCC+TGG 0.421756 8_4:+47257880 None:intergenic
GAGATAAAGGCCAGTGAAGA+TGG 0.425004 8_4:+47258235 None:intergenic
AGCCAAACAAGAGGAGATAA+AGG 0.427912 8_4:+47258222 None:intergenic
TCGCTCACTGTGAGTTTCAA+TGG 0.434947 8_4:-47258461 Msa1329090:CDS
ATGAACATAACAGCCGAAAC+AGG 0.439648 8_4:+47262087 None:intergenic
ATCAAGAGGCGGCGATGATA+AGG 0.440711 8_4:-47256359 Msa1329090:three_prime_UTR
TCAGCCCGGCTCCACTTTGG+TGG 0.442888 8_4:-47258179 Msa1329090:CDS
ATTTGCAGCAAGGGTGTAAA+GGG 0.444742 8_4:+47258427 None:intergenic
CAATAACTTGCGTTGAAATA+CGG 0.445229 8_4:+47256514 None:intergenic
GCTTCAGCCCGGCTCCACTT+TGG 0.445624 8_4:-47258182 Msa1329090:CDS
TTCCTGGCATCGTATATGCT+CGG 0.446310 8_4:-47258124 Msa1329090:CDS
GCAAGCAAGAAGAACGCAAT+TGG 0.452434 8_4:+47256912 None:intergenic
CTCATCAACAACAAAAGTTA+AGG 0.453018 8_4:+47256489 None:intergenic
CAGTTCCACCAAAGTGGAGC+CGG 0.456901 8_4:+47258174 None:intergenic
TAAGTGGCTGCAGCATATGC+TGG 0.457056 8_4:-47258547 Msa1329090:CDS
AACTTCTTAGCCATCTTCAC+TGG 0.457087 8_4:-47258245 Msa1329090:CDS
CTGCTTCTCAACGCCTGTAC+AGG 0.458515 8_4:+47256454 None:intergenic
CCGCTTGCTTTCAGCTGGAC+CGG 0.458672 8_4:-47257670 Msa1329090:CDS
AAACGCGATTATTTAGAAAA+GGG 0.459996 8_4:+47262325 None:intergenic
TCCGACGTTATCAAGTTTCC+CGG 0.462635 8_4:+47256672 None:intergenic
CCATAGAGAAGTGAACCAAT+TGG 0.464693 8_4:+47256738 None:intergenic
GAGTCCCGGTTAACTGCATC+AGG 0.466696 8_4:+47258287 None:intergenic
CATAGAGAAGTGAACCAATT+GGG 0.469088 8_4:+47256739 None:intergenic
GCTCTTCTCCTAGCATTGTC+AGG 0.469934 8_4:+47257871 None:intergenic
CTTCTACCCGGAAGCTGGAA+TGG 0.470439 8_4:+47258081 None:intergenic
ATCATGAATAAGAATAATGC+TGG 0.472558 8_4:+47258055 None:intergenic
TGCCGCATCAGACAGTTCTC+TGG 0.472645 8_4:-47256892 Msa1329090:CDS
TGGTGATTCTTCGAGATTGT+TGG 0.473892 8_4:+47262365 None:intergenic
TTCTGGACATTTATCTGGTG+GGG 0.473994 8_4:-47256618 Msa1329090:CDS
GGAACCTTCTACCCGGAAGC+TGG 0.474322 8_4:+47258076 None:intergenic
TCCTGGCATCGTATATGCTC+GGG 0.483803 8_4:-47258123 Msa1329090:CDS
CTTCTGGACATTTATCTGGT+GGG 0.485263 8_4:-47256619 Msa1329090:CDS
AATTTGCAGCAAGGGTGTAA+AGG 0.488929 8_4:+47258426 None:intergenic
GAATAAACAACGGGAGGATG+AGG 0.497488 8_4:+47258144 None:intergenic
AGATACAACGAGTCAGATGA+TGG 0.502108 8_4:+47258395 None:intergenic
AGTATTGTTGGCAATGGAGA+TGG 0.503210 8_4:-47257987 Msa1329090:CDS
TTCCCGGTGTTGAGTGTGCA+TGG 0.503991 8_4:+47256688 None:intergenic
AGGAGAAGAGCACTCGGCTG+CGG 0.506141 8_4:-47257859 Msa1329090:CDS
TGCATAATCGAACCAAATCA+TGG 0.507552 8_4:+47256205 None:intergenic
CGATGCCAGGAATAAACAAC+GGG 0.520412 8_4:+47258135 None:intergenic
CTTCTTCCATGGCTTCAGCC+CGG 0.520545 8_4:-47258193 Msa1329090:CDS
ATAGTGATGTGTGTTGTGAT+AGG 0.521727 8_4:-47257911 Msa1329090:CDS
TACTTCTGTGGAGGTACGAT+TGG 0.521989 8_4:-47257795 Msa1329090:CDS
GTCTATTGAATTTGCAGCAA+GGG 0.523964 8_4:+47258418 None:intergenic
ATACTGGAACTGCACTAATT+GGG 0.526084 8_4:-47256863 Msa1329090:CDS
ACTTCTGGACATTTATCTGG+TGG 0.526256 8_4:-47256620 Msa1329090:CDS
CAGGATCACCTGACAATGCT+AGG 0.526682 8_4:-47257879 Msa1329090:CDS
CCCTCCTGATGCAGTTAACC+GGG 0.528546 8_4:-47258291 Msa1329090:CDS
GTGGGGATGCACATCTGTCG+TGG 0.528762 8_4:-47256601 Msa1329090:CDS
ATCTGCTCTTCAAATCTCAC+AGG 0.528765 8_4:-47262190 Msa1329090:CDS
AATAGTAGTATTGTTGGCAA+TGG 0.537309 8_4:-47257993 Msa1329090:CDS
GTGGAGCCGGGCTGAAGCCA+TGG 0.539100 8_4:+47258187 None:intergenic
AGTTCCACCAAAGTGGAGCC+GGG 0.542463 8_4:+47258175 None:intergenic
TTGTGATAGGATGATTGGCC+AGG 0.544085 8_4:-47257898 Msa1329090:CDS
GGACAGATTGCTCAATCTCT+CGG 0.544880 8_4:-47257750 Msa1329090:CDS
GTGTGTTGTGATAGGATGAT+TGG 0.550219 8_4:-47257903 Msa1329090:CDS
TTCCTTCTGACTTGAAAACA+TGG 0.551570 8_4:+47257938 None:intergenic
TACCCGGAAGCTGGAATGGA+TGG 0.554919 8_4:+47258085 None:intergenic
CTTGTCTATAGCAATAATCT+GGG 0.555565 8_4:-47257771 Msa1329090:CDS
AAATATACACAATCATAAGA+TGG 0.558420 8_4:+47256110 None:intergenic
GCCCATGCACACTCAACACC+GGG 0.561814 8_4:-47256690 Msa1329090:CDS
GTCGGACTCAGTAGTTTGCA+TGG 0.564468 8_4:-47256655 Msa1329090:CDS
AAGCAGATGAGCCAAACAAG+AGG 0.564685 8_4:+47258213 None:intergenic
TATGGGGTTTCTTGGTTATG+GGG 0.565719 8_4:-47262055 Msa1329090:CDS
TATGCAGCAATAATACAGAA+TGG 0.567827 8_4:-47256255 Msa1329090:three_prime_UTR
AAGAAGAACGCAATTGGTGT+TGG 0.570043 8_4:+47256918 None:intergenic
TGTTCATTGCTGCGTTTATG+GGG 0.570743 8_4:-47262071 Msa1329090:CDS
TGCCCATGCACACTCAACAC+CGG 0.571695 8_4:-47256691 Msa1329090:CDS
TCCCGGTGTTGAGTGTGCAT+GGG 0.574719 8_4:+47256689 None:intergenic
TCTACTTTGCAAGAACTGGT+TGG 0.579133 8_4:-47256959 Msa1329090:CDS
GACATGATGATCACCTGTAC+AGG 0.580447 8_4:-47256467 Msa1329090:three_prime_UTR
TGAGCGATAATGCAAGTGTT+CGG 0.581196 8_4:+47258477 None:intergenic
TGCCAACAATACTACTATTG+TGG 0.582099 8_4:+47257997 None:intergenic
AGCCACTTAAAAGGCTCAGA+AGG 0.583900 8_4:+47258561 None:intergenic
ACTTACCTACGAACATAGTC+CGG 0.585793 8_4:+47257651 None:intergenic
TGGGGATGCACATCTGTCGT+GGG 0.587963 8_4:-47256600 Msa1329090:CDS
TCAGGAGGGAGAGGTTCTAA+AGG 0.592174 8_4:+47258305 None:intergenic
GAAGAACAGTTCCACCAAAG+TGG 0.593406 8_4:+47258168 None:intergenic
AGGAAGAGTTAGATATCAAG+AGG 0.598946 8_4:-47256373 Msa1329090:three_prime_UTR
ACTCAGTAGTTTGCATGGGA+AGG 0.599176 8_4:-47256650 Msa1329090:CDS
TTAACTGCATCAGGAGGGAG+AGG 0.602857 8_4:+47258296 None:intergenic
TACTACATCACATACTTCTG+TGG 0.603312 8_4:-47257807 Msa1329090:CDS
GGAGAGGTTCTAAAGGCGGT+TGG 0.603669 8_4:+47258312 None:intergenic
AAAGATCTCCAAAGAATATG+GGG 0.611675 8_4:-47256048 Msa1329090:three_prime_UTR
TCCCGGTTAACTGCATCAGG+AGG 0.613519 8_4:+47258290 None:intergenic
GATCCAGCATGCCTCAAACA+AGG 0.613943 8_4:+47256144 None:intergenic
CAACAATACTACTATTGTGG+CGG 0.618920 8_4:+47258000 None:intergenic
CGGTTGGCGAAGAATTGGAA+TGG 0.622452 8_4:+47258328 None:intergenic
TGGTGTTGGTATAAGTGCAA+TGG 0.624502 8_4:+47256932 None:intergenic
TCGGACTCAGTAGTTTGCAT+GGG 0.626546 8_4:-47256654 Msa1329090:CDS
TACATCACATACTTCTGTGG+AGG 0.634418 8_4:-47257804 Msa1329090:CDS
TGCCAGAGAACTGTCTGATG+CGG 0.634736 8_4:+47256890 None:intergenic
GGATGCGTAGAGAGTAACAA+GGG 0.636706 8_4:+47257707 None:intergenic
CCCGGTTAACTGCATCAGGA+GGG 0.640329 8_4:+47258291 None:intergenic
TTAGAAATACTAGTGAGTCC+CGG 0.641069 8_4:+47258273 None:intergenic
CCGGTCCAGCTGAAAGCAAG+CGG 0.646338 8_4:+47257670 None:intergenic
TGCCAGGAATAAACAACGGG+AGG 0.653102 8_4:+47258138 None:intergenic
TGGCTACTGCGAATGATATG+GGG 0.654474 8_4:-47262152 Msa1329090:CDS
TACAGTCTGCTAAGTGACAA+CGG 0.654544 8_4:-47257963 Msa1329090:CDS
TTTCTATCGTTGTCTCTGCG+TGG 0.656851 8_4:+47262426 None:intergenic
TAATGCTGGAACCTTCTACC+CGG 0.658008 8_4:+47258069 None:intergenic
CTGGACCGGACTATGTTCGT+AGG 0.661692 8_4:-47257656 Msa1329090:intron
AATGCTAGGAGAAGAGCACT+CGG 0.664079 8_4:-47257865 Msa1329090:CDS
GGTCTATTGAATTTGCAGCA+AGG 0.670145 8_4:+47258417 None:intergenic
GATACAACGAGTCAGATGAT+GGG 0.670491 8_4:+47258396 None:intergenic
GGAGGGAGAGGTTCTAAAGG+CGG 0.680038 8_4:+47258308 None:intergenic
TAACTTGCGTTGAAATACGG+TGG 0.680153 8_4:+47256517 None:intergenic
CAATAATACAGAATGGCGCG+TGG 0.680363 8_4:-47256248 Msa1329090:three_prime_UTR
ATGGCTGCAGAACTTCCAGA+AGG 0.682600 8_4:+47256224 None:intergenic
AAGAGTTAGATATCAAGAGG+CGG 0.683061 8_4:-47256370 Msa1329090:three_prime_UTR
CTGTTTGGACCCAATAGTGT+AGG 0.683478 8_4:-47256792 Msa1329090:CDS
ATAGCCAAAAGTCTAATCTG+CGG 0.685024 8_4:+47257829 None:intergenic
AGATGTAACTGAAACAGCAG+CGG 0.694331 8_4:+47256818 None:intergenic
ACGATGCCAGGAATAAACAA+CGG 0.695028 8_4:+47258134 None:intergenic
ACCGGGAAACTTGATAACGT+CGG 0.701749 8_4:-47256673 Msa1329090:CDS
GAATCCATATCGTAACGACA+AGG 0.707670 8_4:+47262265 None:intergenic
AGGATGCGTAGAGAGTAACA+AGG 0.751781 8_4:+47257706 None:intergenic
GAGTTTCAATGGTGTCAGTG+CGG 0.765466 8_4:-47258450 Msa1329090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTAGTTTTAATTAAAG+TGG - chr8_4:47256851-47256870 Msa1329090:CDS 10.0%
!!! TAATATAGAAAAAAATGTTT+TGG - chr8_4:47256981-47257000 Msa1329090:intron 10.0%
!!! TAATTGTAATTTTGTTTTTA+TGG + chr8_4:47257127-47257146 None:intergenic 10.0%
!!! AAATAAAAACTGAATTTTTT+TGG - chr8_4:47257285-47257304 Msa1329090:intron 10.0%
!!! AATTGTTTTTTATTTTTAAG+AGG - chr8_4:47257313-47257332 Msa1329090:intron 10.0%
!!! AAATAAAAACTGATTTTTTT+TGG - chr8_4:47257382-47257401 Msa1329090:intron 10.0%
!! AATATTTATCATTAAAACAA+CGG - chr8_4:47257862-47257881 Msa1329090:CDS 10.0%
!!! AAGTTATTACTATTTTTATA+AGG - chr8_4:47258223-47258242 Msa1329090:CDS 10.0%
!! TGATTACTATTATAAAATAA+GGG + chr8_4:47258591-47258610 None:intergenic 10.0%
!! TTGATTACTATTATAAAATA+AGG + chr8_4:47258592-47258611 None:intergenic 10.0%
!!! TTCCTTTTTAAAATAATATA+TGG - chr8_4:47258709-47258728 Msa1329090:intron 10.0%
!!! TTCCATATATTATTTTAAAA+AGG + chr8_4:47258714-47258733 None:intergenic 10.0%
!!! TTTTAAAATAATATATGGAA+TGG - chr8_4:47258714-47258733 Msa1329090:intron 10.0%
!! AAATTTCGAAAAAAATAAAT+TGG + chr8_4:47259202-47259221 None:intergenic 10.0%
!!! TATTTAATATAGTTCTAAAA+TGG + chr8_4:47260871-47260890 None:intergenic 10.0%
!! ACTATTTATCTAAAAAATCT+CGG - chr8_4:47256610-47256629 Msa1329090:CDS 15.0%
!!! TTTTAATTAAAGTGGATTTT+AGG - chr8_4:47256859-47256878 Msa1329090:CDS 15.0%
!! ATCAAAAGTTTAATACAAAT+CGG - chr8_4:47257075-47257094 Msa1329090:intron 15.0%
!!! GATAGTTGTTTTTTATTTTT+AGG - chr8_4:47257213-47257232 Msa1329090:intron 15.0%
!! ATATTTATCATTAAAACAAC+GGG - chr8_4:47257863-47257882 Msa1329090:CDS 15.0%
!!! TAATAACTTATGCTTTTTAA+AGG + chr8_4:47258048-47258067 None:intergenic 15.0%
!!! GTTATTACACTATTTTTATA+AGG - chr8_4:47258061-47258080 Msa1329090:CDS 15.0%
!! TTTGTAGATATTGAAAAATA+CGG - chr8_4:47258772-47258791 Msa1329090:intron 15.0%
!!! TCGAAATTTTTCTTATAAAT+AGG - chr8_4:47259213-47259232 Msa1329090:intron 15.0%
!!! AGTGATTTTGTAATTATATT+TGG - chr8_4:47259579-47259598 Msa1329090:intron 15.0%
!! AGTACAAATAAACAATTTAA+AGG + chr8_4:47260677-47260696 None:intergenic 15.0%
!! AAAAGAAAAATAAAGAAAAG+TGG - chr8_4:47261996-47262015 Msa1329090:intron 15.0%
!! AAAGAAAATATAAGGTAAAT+GGG + chr8_4:47262278-47262297 None:intergenic 15.0%
!! AAAAGAAAATATAAGGTAAA+TGG + chr8_4:47262279-47262298 None:intergenic 15.0%
!! AATGAAATTACCAGAAAATA+AGG + chr8_4:47256298-47256317 None:intergenic 20.0%
!!! GCTTTATTAACTCTTAATTA+TGG - chr8_4:47256403-47256422 Msa1329090:three_prime_UTR 20.0%
!!! ACTAACAATTTTGAAATTGT+CGG + chr8_4:47256567-47256586 None:intergenic 20.0%
!!! CATGTGTTTTTTTTTTTGTT+GGG - chr8_4:47256812-47256831 Msa1329090:CDS 20.0%
!!! TTCTCCAACTTTTTTTTTTT+TGG + chr8_4:47256926-47256945 None:intergenic 20.0%
!!! TCTCTCTAAAAAAAGAATTT+TGG - chr8_4:47257005-47257024 Msa1329090:intron 20.0%
!!! AAAATGTATTTTCTACTTTC+TGG + chr8_4:47257150-47257169 None:intergenic 20.0%
!!! AGTTGTTTTTTATTTTTAGG+AGG - chr8_4:47257216-47257235 Msa1329090:intron 20.0%
!! TAAGTAAAGAAAAGAAAAAG+TGG + chr8_4:47257561-47257580 None:intergenic 20.0%
!!! TTTTAACCGACATTATTATA+AGG + chr8_4:47257688-47257707 None:intergenic 20.0%
!!! TTTATGATTTTGTAAGAGAT+AGG + chr8_4:47258196-47258215 None:intergenic 20.0%
!! TAGTCAATGTATAATTACAA+AGG + chr8_4:47258411-47258430 None:intergenic 20.0%
!! AAAATGAGATATATTAACAC+CGG + chr8_4:47258490-47258509 None:intergenic 20.0%
!! TAAATAACCAATATACATCT+AGG + chr8_4:47258639-47258658 None:intergenic 20.0%
!!! GTATATTGGTTATTTATTCA+TGG - chr8_4:47258643-47258662 Msa1329090:intron 20.0%
!! ATTCCTTAATTAATCATTAG+TGG - chr8_4:47258672-47258691 Msa1329090:intron 20.0%
!! TTACCACTAATGATTAATTA+AGG + chr8_4:47258678-47258697 None:intergenic 20.0%
!!! TCAATCAAACAAATTTTACT+TGG - chr8_4:47258916-47258935 Msa1329090:intron 20.0%
!!! TATCTTTTTATAATAAGGAC+AGG + chr8_4:47258980-47258999 None:intergenic 20.0%
!! AAAAAGACAAACATTAAATG+AGG - chr8_4:47259112-47259131 Msa1329090:intron 20.0%
!! AAAAGACAAACATTAAATGA+GGG - chr8_4:47259113-47259132 Msa1329090:intron 20.0%
!!! ATTTTTCTTATAAATAGGAC+CGG - chr8_4:47259218-47259237 Msa1329090:intron 20.0%
!! GAACTATATTAAATAGTTTG+AGG - chr8_4:47260876-47260895 Msa1329090:intron 20.0%
!! TTATGTTAATGTTATGTTAC+TGG + chr8_4:47261122-47261141 None:intergenic 20.0%
!! ACTTATGATTAAACTATCTT+TGG - chr8_4:47261297-47261316 Msa1329090:intron 20.0%
!! AAATATACACAATCATAAGA+TGG + chr8_4:47262185-47262204 None:intergenic 20.0%
!! CAGAAGAAAAAGAAAATATA+AGG + chr8_4:47262286-47262305 None:intergenic 20.0%
! AAACGCGATTATTTAGAAAA+GGG + chr8_4:47255970-47255989 None:intergenic 25.0%
! ATGGAAAGAAAAGAAAAAAG+AGG + chr8_4:47256326-47256345 None:intergenic 25.0%
! TTCATCAATAATGCAGAAAA+TGG + chr8_4:47256345-47256364 None:intergenic 25.0%
! ATTTGAAAATGTAGTAATCC+AGG + chr8_4:47256483-47256502 None:intergenic 25.0%
! GTTAGTTGAACAATTTAACT+CGG - chr8_4:47256581-47256600 Msa1329090:CDS 25.0%
! TTAGTTGAACAATTTAACTC+GGG - chr8_4:47256582-47256601 Msa1329090:CDS 25.0%
! ACATTGTTAGATTGAAAAAC+CGG - chr8_4:47256781-47256800 Msa1329090:CDS 25.0%
! AAAAAAAAACACATGGAAAG+TGG + chr8_4:47256807-47256826 None:intergenic 25.0%
! CCAACAAAAAAAAAAACACA+TGG + chr8_4:47256814-47256833 None:intergenic 25.0%
!!! CCATGTGTTTTTTTTTTTGT+TGG - chr8_4:47256811-47256830 Msa1329090:CDS 25.0%
!!! ACTTTTTTTTTTTTGGTGTC+CGG + chr8_4:47256919-47256938 None:intergenic 25.0%
! GACACCAAAAAAAAAAAAGT+TGG - chr8_4:47256919-47256938 Msa1329090:CDS 25.0%
! ATATTTGTGATAGAGAGAAA+GGG + chr8_4:47257187-47257206 None:intergenic 25.0%
! AATATTTGTGATAGAGAGAA+AGG + chr8_4:47257188-47257207 None:intergenic 25.0%
! AGAGGTTTATTAAAAACTGT+TGG - chr8_4:47257331-47257350 Msa1329090:intron 25.0%
!!! GTCAAGTTTACTTGTTTTTA+AGG - chr8_4:47257427-47257446 Msa1329090:intron 25.0%
! TGGACTTTAGTGTTAAAATA+TGG + chr8_4:47257597-47257616 None:intergenic 25.0%
!!! GGTGTTGATATAAAACTAAT+TGG - chr8_4:47257780-47257799 Msa1329090:CDS 25.0%
! CAAAAGTAATATGTTTGCAT+TGG + chr8_4:47258137-47258156 None:intergenic 25.0%
!!! ATTACTTTTGTTACATATGC+AGG - chr8_4:47258147-47258166 Msa1329090:CDS 25.0%
!!! TTTTTCTAAAAAGTCGATCA+TGG + chr8_4:47258276-47258295 None:intergenic 25.0%
!!! CACAATGCAAATTTTGTTTA+TGG - chr8_4:47258331-47258350 Msa1329090:CDS 25.0%
! AATGTATAATTACAAAGGAG+AGG + chr8_4:47258406-47258425 None:intergenic 25.0%
!! ATTGACTATTTGTTCCTTTT+GGG - chr8_4:47258423-47258442 Msa1329090:CDS 25.0%
! TTCAATATCTACAAAATCAG+CGG + chr8_4:47258767-47258786 None:intergenic 25.0%
!! TTTTTATAATAAGGACAGGA+GGG + chr8_4:47258976-47258995 None:intergenic 25.0%
! CTAACTTATATGAGATATTC+CGG + chr8_4:47259240-47259259 None:intergenic 25.0%
! TATAAGTTAGAAGCTTTACA+TGG - chr8_4:47259250-47259269 Msa1329090:intron 25.0%
! ACTTTCTATATGTGTATGTT+TGG + chr8_4:47259395-47259414 None:intergenic 25.0%
! ACCTACAAACTATAAAGAAT+TGG - chr8_4:47259432-47259451 Msa1329090:intron 25.0%
!! TCCAATTCTTTATAGTTTGT+AGG + chr8_4:47259436-47259455 None:intergenic 25.0%
! ATATACAGCATATATTTCCA+GGG + chr8_4:47259505-47259524 None:intergenic 25.0%
! TATATACAGCATATATTTCC+AGG + chr8_4:47259506-47259525 None:intergenic 25.0%
! TTGTAATTATATTTGGTCAG+TGG - chr8_4:47259586-47259605 Msa1329090:intron 25.0%
! TATCAGCATATTACAATTCA+TGG + chr8_4:47259659-47259678 None:intergenic 25.0%
!!! TACTTGCTATGAATTCTTAT+TGG - chr8_4:47259700-47259719 Msa1329090:intron 25.0%
!!! TATGTTTTATTCTCTGCATT+AGG - chr8_4:47259778-47259797 Msa1329090:intron 25.0%
! ATCATGAATAAGAATAATGC+TGG + chr8_4:47260240-47260259 None:intergenic 25.0%
! TAAACAATTTAAAGGACTTC+AGG + chr8_4:47260669-47260688 None:intergenic 25.0%
!!! TAAGTTTTTTTTTCCCACAT+TGG - chr8_4:47260709-47260728 Msa1329090:intron 25.0%
! AGAATTACGTTGAACTATTT+GGG + chr8_4:47261022-47261041 None:intergenic 25.0%
! TAGAATTACGTTGAACTATT+TGG + chr8_4:47261023-47261042 None:intergenic 25.0%
!! AGTTCAACGTAATTCTAAAA+TGG - chr8_4:47261026-47261045 Msa1329090:intron 25.0%
!!! GTTCAACGTAATTCTAAAAT+GGG - chr8_4:47261027-47261046 Msa1329090:intron 25.0%
! TCATTTCTAATTCAAGACAA+AGG + chr8_4:47261255-47261274 None:intergenic 25.0%
! AAAATGTTCATACGCATATT+TGG + chr8_4:47261750-47261769 None:intergenic 25.0%
!!! CAGAAAGATATTTTTCAACA+AGG - chr8_4:47262205-47262224 Msa1329090:CDS 25.0%
! TTAAAGATCTCCAAAGAATA+TGG - chr8_4:47262242-47262261 Msa1329090:CDS 25.0%
! TAAAGATCTCCAAAGAATAT+GGG - chr8_4:47262243-47262262 Msa1329090:CDS 25.0%
! TTAGCTCAATTCTGTAATTT+AGG - chr8_4:47262339-47262358 Msa1329090:CDS 25.0%
!!! TTCTGTTTTCACCATTTTTT+GGG + chr8_4:47262380-47262399 None:intergenic 25.0%
GAAACGCGATTATTTAGAAA+AGG + chr8_4:47255971-47255990 None:intergenic 30.0%
ATATGGATTCAAGCATTTAC+AGG - chr8_4:47256040-47256059 Msa1329090:three_prime_UTR 30.0%
! AATGATATGGGGAAGATTTT+CGG - chr8_4:47256151-47256170 Msa1329090:three_prime_UTR 30.0%
!!! CATTTCTTTGCCTTATTTTC+TGG - chr8_4:47256285-47256304 Msa1329090:three_prime_UTR 30.0%
AACTCAAAACATCTACAATG+TGG - chr8_4:47256638-47256657 Msa1329090:CDS 30.0%
ATCTACAATGTGGTTATATG+AGG - chr8_4:47256648-47256667 Msa1329090:CDS 30.0%
TCATAAACATCTACCATGTA+TGG - chr8_4:47256706-47256725 Msa1329090:CDS 30.0%
TATAACCATGTAACCATACA+TGG + chr8_4:47256722-47256741 None:intergenic 30.0%
!!! CTTTTTTTTTTTTGGTGTCC+GGG + chr8_4:47256918-47256937 None:intergenic 30.0%
GGAGGTTTATTAAAAACTGT+TGG - chr8_4:47257234-47257253 Msa1329090:intron 30.0%
! ATCGACTTTGTAAATTGAGT+TGG + chr8_4:47257617-47257636 None:intergenic 30.0%
GTCGATATTGTTATACTTGA+CGG - chr8_4:47257631-47257650 Msa1329090:intron 30.0%
! TGACGGTTGACATTTTTATA+TGG - chr8_4:47257648-47257667 Msa1329090:intron 30.0%
CCGACATTATTATAAGGTTT+CGG + chr8_4:47257682-47257701 None:intergenic 30.0%
CCGAAACCTTATAATAATGT+CGG - chr8_4:47257679-47257698 Msa1329090:CDS 30.0%
! ATGTCGGTTAAAATACTACT+CGG - chr8_4:47257695-47257714 Msa1329090:CDS 30.0%
GTTAAATATCATTCTCTCTC+TGG - chr8_4:47258296-47258315 Msa1329090:CDS 30.0%
TTGTTTATGGCAATCATAAC+TGG - chr8_4:47258344-47258363 Msa1329090:CDS 30.0%
!! CATTGACTATTTGTTCCTTT+TGG - chr8_4:47258422-47258441 Msa1329090:CDS 30.0%
! TTGACTATTTGTTCCTTTTG+GGG - chr8_4:47258424-47258443 Msa1329090:CDS 30.0%
! ATATACATCTAGGTTTTCTC+TGG + chr8_4:47258629-47258648 None:intergenic 30.0%
GAGAAAACCTAGATGTATAT+TGG - chr8_4:47258629-47258648 Msa1329090:intron 30.0%
! CTTTTTATAATAAGGACAGG+AGG + chr8_4:47258977-47258996 None:intergenic 30.0%
! TAATTTGTGAAGCTGCAATT+CGG - chr8_4:47259321-47259340 Msa1329090:intron 30.0%
ATAAAAGTTCTTTAGCTGAG+AGG - chr8_4:47259530-47259549 Msa1329090:intron 30.0%
AATAGTAGTATTGTTGGCAA+TGG - chr8_4:47260299-47260318 Msa1329090:intron 30.0%
TCTTGTCTATAGCAATAATC+TGG - chr8_4:47260520-47260539 Msa1329090:intron 30.0%
CTTGTCTATAGCAATAATCT+GGG - chr8_4:47260521-47260540 Msa1329090:intron 30.0%
GAATTACGTTGAACTATTTG+GGG + chr8_4:47261021-47261040 None:intergenic 30.0%
GAATGTGTGAAAAAGGATAA+CGG - chr8_4:47261156-47261175 Msa1329090:intron 30.0%
CTCATAACAAATATCCCAAT+TGG - chr8_4:47261539-47261558 Msa1329090:intron 30.0%
! CAATAACTTGCGTTGAAATA+CGG + chr8_4:47261781-47261800 None:intergenic 30.0%
CTCATCAACAACAAAAGTTA+AGG + chr8_4:47261806-47261825 None:intergenic 30.0%
TGTAGCGTTATATCGTAAAT+AGG - chr8_4:47261899-47261918 Msa1329090:intron 30.0%
TATGCAGCAATAATACAGAA+TGG - chr8_4:47262037-47262056 Msa1329090:CDS 30.0%
AAAGATCTCCAAAGAATATG+GGG - chr8_4:47262244-47262263 Msa1329090:CDS 30.0%
!!! TCTGTTTTCACCATTTTTTG+GGG + chr8_4:47262379-47262398 None:intergenic 30.0%
!! GTTCTGTTTTCACCATTTTT+TGG + chr8_4:47262381-47262400 None:intergenic 30.0%
!! TAATCGCGTTTCGCTTTTAA+TGG - chr8_4:47255979-47255998 Msa1329090:three_prime_UTR 35.0%
ACAGGTTCAGCTGAATTATT+TGG - chr8_4:47256120-47256139 Msa1329090:three_prime_UTR 35.0%
TCTTATGCATCTTCCTGTTT+CGG - chr8_4:47256192-47256211 Msa1329090:three_prime_UTR 35.0%
TATGTTCATTGCTGCGTTTA+TGG - chr8_4:47256219-47256238 Msa1329090:three_prime_UTR 35.0%
ATGTTCATTGCTGCGTTTAT+GGG - chr8_4:47256220-47256239 Msa1329090:three_prime_UTR 35.0%
TTTATGGGGTTTCTTGGTTA+TGG - chr8_4:47256235-47256254 Msa1329090:three_prime_UTR 35.0%
TTATGGGGTTTCTTGGTTAT+GGG - chr8_4:47256236-47256255 Msa1329090:three_prime_UTR 35.0%
ATCTACCATGTATGGTTACA+TGG - chr8_4:47256714-47256733 Msa1329090:CDS 35.0%
!! AGAATTTTGGCAAGAGTGAT+CGG - chr8_4:47257018-47257037 Msa1329090:intron 35.0%
!!! GTGGAGAAGTGTTTTATCTT+GGG - chr8_4:47257040-47257059 Msa1329090:intron 35.0%
AAAATATTTCGCGAGAGAGT+AGG + chr8_4:47257457-47257476 None:intergenic 35.0%
!! TCTCTCGCGAAATATTTTAG+CGG - chr8_4:47257459-47257478 Msa1329090:intron 35.0%
!!! TGTTTGTTGTCTGGTTTTGA+TGG - chr8_4:47257485-47257504 Msa1329090:intron 35.0%
CTCATTCCTTGTACTATTTG+TGG - chr8_4:47257514-47257533 Msa1329090:intron 35.0%
ATTGGACCACAAATAGTACA+AGG + chr8_4:47257523-47257542 None:intergenic 35.0%
TTTGTGGTCCAATTCCAAAA+TGG - chr8_4:47257530-47257549 Msa1329090:intron 35.0%
! TGTCGGTTAAAATACTACTC+GGG - chr8_4:47257696-47257715 Msa1329090:CDS 35.0%
GGAATGTTAAAGAATGCCTT+GGG - chr8_4:47257884-47257903 Msa1329090:CDS 35.0%
! ATCTTTTAACCAATGTCCCA+AGG + chr8_4:47257903-47257922 None:intergenic 35.0%
TTATGCTAATAAGTGCCCTT+AGG + chr8_4:47258025-47258044 None:intergenic 35.0%
ATAGGCTAACAAATGCACTT+AGG + chr8_4:47258178-47258197 None:intergenic 35.0%
AAATATCATTCTCTCTCTGG+TGG - chr8_4:47258299-47258318 Msa1329090:CDS 35.0%
TTTATGGCAATCATAACTGG+TGG - chr8_4:47258347-47258366 Msa1329090:CDS 35.0%
TCGAACCCATTATTGTGTTT+GGG - chr8_4:47258370-47258389 Msa1329090:CDS 35.0%
CGATACCCAAACACAATAAT+GGG + chr8_4:47258378-47258397 None:intergenic 35.0%
TCGATACCCAAACACAATAA+TGG + chr8_4:47258379-47258398 None:intergenic 35.0%
AGATATATTAACACCGGCAA+TGG + chr8_4:47258484-47258503 None:intergenic 35.0%
AATCAGCGGAAAATACACTT+AGG + chr8_4:47258753-47258772 None:intergenic 35.0%
CACATTGATCAGATCTCAAA+AGG + chr8_4:47258844-47258863 None:intergenic 35.0%
TTGAATGTGTTGCAAAAGAG+TGG - chr8_4:47258864-47258883 Msa1329090:intron 35.0%
GCAGTAACTAATGATTGTCT+TGG + chr8_4:47259021-47259040 None:intergenic 35.0%
TTGCAGCTTCACAAATTATG+CGG + chr8_4:47259319-47259338 None:intergenic 35.0%
!! GTTGTGAAATTTTGGTGACA+CGG + chr8_4:47259365-47259384 None:intergenic 35.0%
! TATGTGTATGTTTGGTTCAG+CGG + chr8_4:47259387-47259406 None:intergenic 35.0%
CATAGCAAGTAAATCAGTCT+TGG + chr8_4:47259691-47259710 None:intergenic 35.0%
TGCTATGAATTCTTATTGGC+AGG - chr8_4:47259704-47259723 Msa1329090:intron 35.0%
GTCTATTGAATTTGCAGCAA+GGG + chr8_4:47259877-47259896 None:intergenic 35.0%
TTAGAAATACTAGTGAGTCC+CGG + chr8_4:47260022-47260041 None:intergenic 35.0%
CAACAATACTACTATTGTGG+CGG + chr8_4:47260295-47260314 None:intergenic 35.0%
TGCCAACAATACTACTATTG+TGG + chr8_4:47260298-47260317 None:intergenic 35.0%
!!! ATCCATGTTTTCAAGTCAGA+AGG - chr8_4:47260352-47260371 Msa1329090:intron 35.0%
! TTCCTTCTGACTTGAAAACA+TGG + chr8_4:47260357-47260376 None:intergenic 35.0%
ATAGTGATGTGTGTTGTGAT+AGG - chr8_4:47260381-47260400 Msa1329090:intron 35.0%
ATAGCCAAAAGTCTAATCTG+CGG + chr8_4:47260466-47260485 None:intergenic 35.0%
TACTACATCACATACTTCTG+TGG - chr8_4:47260485-47260504 Msa1329090:intron 35.0%
!! TACGCATCCTTTTCGTTTTT+CGG - chr8_4:47260599-47260618 Msa1329090:intron 35.0%
! AAAAAGGATAGTGGTGCATA+CGG + chr8_4:47260751-47260770 None:intergenic 35.0%
AAGAGATACTTGAACCAGAT+TGG + chr8_4:47260846-47260865 None:intergenic 35.0%
ATAATTGGCGTAAATGCCAT+GGG + chr8_4:47260975-47260994 None:intergenic 35.0%
AATAATTGGCGTAAATGCCA+TGG + chr8_4:47260976-47260995 None:intergenic 35.0%
GCTCAAGAGAGAAGAATAAT+TGG + chr8_4:47260990-47261009 None:intergenic 35.0%
TAACACATTGGAGATAACAG+AGG - chr8_4:47261056-47261075 Msa1329090:intron 35.0%
AACACATTGGAGATAACAGA+GGG - chr8_4:47261057-47261076 Msa1329090:intron 35.0%
TGTGACAGAATGTGTGAAAA+AGG - chr8_4:47261149-47261168 Msa1329090:intron 35.0%
GTGTACGTAATGAGACTTAA+AGG - chr8_4:47261178-47261197 Msa1329090:intron 35.0%
TAATTCAAGACAAAGGCAAG+AGG + chr8_4:47261248-47261267 None:intergenic 35.0%
AAGTTCTACTTTGCAAGAAC+TGG - chr8_4:47261329-47261348 Msa1329090:intron 35.0%
ATACTGGAACTGCACTAATT+GGG - chr8_4:47261429-47261448 Msa1329090:intron 35.0%
TCAGTTACATCTGAACTGTT+TGG - chr8_4:47261485-47261504 Msa1329090:intron 35.0%
TGATTGACACCTACACTATT+GGG + chr8_4:47261512-47261531 None:intergenic 35.0%
CATAGAGAAGTGAACCAATT+GGG + chr8_4:47261556-47261575 None:intergenic 35.0%
!! CATACGCATATTTGGTTCTT+AGG + chr8_4:47261742-47261761 None:intergenic 35.0%
AGGAAGAGTTAGATATCAAG+AGG - chr8_4:47261919-47261938 Msa1329090:intron 35.0%
AAGAGTTAGATATCAAGAGG+CGG - chr8_4:47261922-47261941 Msa1329090:intron 35.0%
TGCATAATCGAACCAAATCA+TGG + chr8_4:47262090-47262109 None:intergenic 35.0%
! TTATGCTTTGACCTTGTTTG+AGG - chr8_4:47262137-47262156 Msa1329090:CDS 35.0%
TACTTGTTCCCCATATTCTT+TGG + chr8_4:47262255-47262274 None:intergenic 35.0%
!!! CTGTTTTCACCATTTTTTGG+GGG + chr8_4:47262378-47262397 None:intergenic 35.0%
TGGTGATTCTTCGAGATTGT+TGG + chr8_4:47255930-47255949 None:intergenic 40.0%
!! TTTTAATGGCGGGACAATCA+CGG - chr8_4:47255993-47256012 Msa1329090:three_prime_UTR 40.0%
TGATCCTTGTCGTTACGATA+TGG - chr8_4:47256023-47256042 Msa1329090:three_prime_UTR 40.0%
GAATCCATATCGTAACGACA+AGG + chr8_4:47256030-47256049 None:intergenic 40.0%
ATCTGCTCTTCAAATCTCAC+AGG - chr8_4:47256102-47256121 Msa1329090:three_prime_UTR 40.0%
TTTGGCTACTGCGAATGATA+TGG - chr8_4:47256138-47256157 Msa1329090:three_prime_UTR 40.0%
TTGGCTACTGCGAATGATAT+GGG - chr8_4:47256139-47256158 Msa1329090:three_prime_UTR 40.0%
! ATATGGGGAAGATTTTCGGT+TGG - chr8_4:47256155-47256174 Msa1329090:three_prime_UTR 40.0%
!!! AAGATTTTCGGTTGGTCTTC+TGG - chr8_4:47256163-47256182 Msa1329090:three_prime_UTR 40.0%
ATGAACATAACAGCCGAAAC+AGG + chr8_4:47256208-47256227 None:intergenic 40.0%
TGTTCATTGCTGCGTTTATG+GGG - chr8_4:47256221-47256240 Msa1329090:three_prime_UTR 40.0%
TATGGGGTTTCTTGGTTATG+GGG - chr8_4:47256237-47256256 Msa1329090:three_prime_UTR 40.0%
TTCTTGGTTATGGGGTTCAA+TGG - chr8_4:47256245-47256264 Msa1329090:three_prime_UTR 40.0%
TGGTTATATGAGGTCAGTAG+CGG - chr8_4:47256658-47256677 Msa1329090:CDS 40.0%
AAAAACACATGGAAAGTGGC+CGG + chr8_4:47256803-47256822 None:intergenic 40.0%
!!! GGTGGAGAAGTGTTTTATCT+TGG - chr8_4:47257039-47257058 Msa1329090:intron 40.0%
AGAGAAAGGGAAAGCAAACT+AGG + chr8_4:47257174-47257193 None:intergenic 40.0%
! AAAAAGTGGAACCGCCATTT+TGG + chr8_4:47257547-47257566 None:intergenic 40.0%
GGGAATGTTAAAGAATGCCT+TGG - chr8_4:47257883-47257902 Msa1329090:CDS 40.0%
TAAAGAATGCCTTGGGACAT+TGG - chr8_4:47257891-47257910 Msa1329090:CDS 40.0%
GCATATGTCGTGAATCCTAA+GGG - chr8_4:47258007-47258026 Msa1329090:CDS 40.0%
GTCGAACCCATTATTGTGTT+TGG - chr8_4:47258369-47258388 Msa1329090:CDS 40.0%
!! ACTATTTGTTCCTTTTGGGG+TGG - chr8_4:47258427-47258446 Msa1329090:CDS 40.0%
AAGCACAAGGTGTACTAAAG+AGG + chr8_4:47258453-47258472 None:intergenic 40.0%
TAGTACACCTTGTGCTTAAG+AGG - chr8_4:47258456-47258475 Msa1329090:CDS 40.0%
AATGGATCCTCTTAAGCACA+AGG + chr8_4:47258466-47258485 None:intergenic 40.0%
!! TCCACTTTTCCAAATGGGTA+GGG + chr8_4:47258800-47258819 None:intergenic 40.0%
!! ATCCACTTTTCCAAATGGGT+AGG + chr8_4:47258801-47258820 None:intergenic 40.0%
!! CAGGATCCACTTTTCCAAAT+GGG + chr8_4:47258805-47258824 None:intergenic 40.0%
!! ACAGGATCCACTTTTCCAAA+TGG + chr8_4:47258806-47258825 None:intergenic 40.0%
AGGTCTGCAATGAAAATGAC+AGG + chr8_4:47258824-47258843 None:intergenic 40.0%
! GTTCAGCGGTTGTGAAATTT+TGG + chr8_4:47259373-47259392 None:intergenic 40.0%
!! AGACACTTTGTTGATTTCCC+TGG - chr8_4:47259485-47259504 Msa1329090:intron 40.0%
GTCTAAAAGTTAACCAGTCC+TGG + chr8_4:47259634-47259653 None:intergenic 40.0%
! TTCCTTCTGAGCCTTTTAAG+TGG - chr8_4:47259729-47259748 Msa1329090:intron 40.0%
ATATGCTGCAGCCACTTAAA+AGG + chr8_4:47259743-47259762 None:intergenic 40.0%
AATGCAAGTGTTCGGTTAAC+TGG + chr8_4:47259810-47259829 None:intergenic 40.0%
TGAGCGATAATGCAAGTGTT+CGG + chr8_4:47259818-47259837 None:intergenic 40.0%
! ATTTGCAGCAAGGGTGTAAA+GGG + chr8_4:47259868-47259887 None:intergenic 40.0%
! AATTTGCAGCAAGGGTGTAA+AGG + chr8_4:47259869-47259888 None:intergenic 40.0%
GGTCTATTGAATTTGCAGCA+AGG + chr8_4:47259878-47259897 None:intergenic 40.0%
GATACAACGAGTCAGATGAT+GGG + chr8_4:47259899-47259918 None:intergenic 40.0%
AGATACAACGAGTCAGATGA+TGG + chr8_4:47259900-47259919 None:intergenic 40.0%
GCTGCAATGCAAACAAAAAG+AGG + chr8_4:47259942-47259961 None:intergenic 40.0%
AACTTCTTAGCCATCTTCAC+TGG - chr8_4:47260047-47260066 Msa1329090:intron 40.0%
AGCCAAACAAGAGGAGATAA+AGG + chr8_4:47260073-47260092 None:intergenic 40.0%
ACGATGCCAGGAATAAACAA+CGG + chr8_4:47260161-47260180 None:intergenic 40.0%
CGCCACAATAGTAGTATTGT+TGG - chr8_4:47260293-47260312 Msa1329090:intron 40.0%
AGTATTGTTGGCAATGGAGA+TGG - chr8_4:47260305-47260324 Msa1329090:intron 40.0%
TACAGTCTGCTAAGTGACAA+CGG - chr8_4:47260329-47260348 Msa1329090:intron 40.0%
GTGTGTTGTGATAGGATGAT+TGG - chr8_4:47260389-47260408 Msa1329090:intron 40.0%
! TTGTCCGCAGATTAGACTTT+TGG - chr8_4:47260459-47260478 Msa1329090:intron 40.0%
TACATCACATACTTCTGTGG+AGG - chr8_4:47260488-47260507 Msa1329090:intron 40.0%
ACTTACCTACGAACATAGTC+CGG + chr8_4:47260644-47260663 None:intergenic 40.0%
GGAACTTAAAGGACCAATGT+GGG + chr8_4:47260725-47260744 None:intergenic 40.0%
TGGAACTTAAAGGACCAATG+TGG + chr8_4:47260726-47260745 None:intergenic 40.0%
GCATACGGAATGGAACTTAA+AGG + chr8_4:47260736-47260755 None:intergenic 40.0%
ATGTTACTGACGTGACAAAC+AGG - chr8_4:47260784-47260803 Msa1329090:intron 40.0%
AATAGGTTGCATAGCCTAAG+AGG - chr8_4:47260924-47260943 Msa1329090:intron 40.0%
AATGGGCAAGAGTAACACAT+TGG - chr8_4:47261044-47261063 Msa1329090:intron 40.0%
ACACATTGGAGATAACAGAG+GGG - chr8_4:47261058-47261077 Msa1329090:intron 40.0%
TGGCATGACATGAACAAGTT+TGG + chr8_4:47261102-47261121 None:intergenic 40.0%
TCTACTTTGCAAGAACTGGT+TGG - chr8_4:47261333-47261352 Msa1329090:intron 40.0%
!! TGGTGTTGGTATAAGTGCAA+TGG + chr8_4:47261363-47261382 None:intergenic 40.0%
AAGAAGAACGCAATTGGTGT+TGG + chr8_4:47261377-47261396 None:intergenic 40.0%
CATACTGGAACTGCACTAAT+TGG - chr8_4:47261428-47261447 Msa1329090:intron 40.0%
AGATGTAACTGAAACAGCAG+CGG + chr8_4:47261477-47261496 None:intergenic 40.0%
GTGATTGACACCTACACTAT+TGG + chr8_4:47261513-47261532 None:intergenic 40.0%
CCATAGAGAAGTGAACCAAT+TGG + chr8_4:47261557-47261576 None:intergenic 40.0%
! CCAATTGGTTCACTTCTCTA+TGG - chr8_4:47261554-47261573 Msa1329090:intron 40.0%
GCTACTTCTGGACATTTATC+TGG - chr8_4:47261669-47261688 Msa1329090:intron 40.0%
ACTTCTGGACATTTATCTGG+TGG - chr8_4:47261672-47261691 Msa1329090:intron 40.0%
CTTCTGGACATTTATCTGGT+GGG - chr8_4:47261673-47261692 Msa1329090:intron 40.0%
TTCTGGACATTTATCTGGTG+GGG - chr8_4:47261674-47261693 Msa1329090:intron 40.0%
! TAACTTGCGTTGAAATACGG+TGG + chr8_4:47261778-47261797 None:intergenic 40.0%
TCATAAGATGGCAGCATCAT+TGG + chr8_4:47262173-47262192 None:intergenic 40.0%
!!! TTCACCATTTTTTGGGGGTA+GGG + chr8_4:47262373-47262392 None:intergenic 40.0%
!!! TTTCACCATTTTTTGGGGGT+AGG + chr8_4:47262374-47262393 None:intergenic 40.0%
TTTCTATCGTTGTCTCTGCG+TGG + chr8_4:47255869-47255888 None:intergenic 45.0%
! GGGATTCTTCGACGTGATTT+TGG + chr8_4:47255950-47255969 None:intergenic 45.0%
!! TCGCGTTTCGCTTTTAATGG+CGG - chr8_4:47255982-47256001 Msa1329090:three_prime_UTR 45.0%
TGGCTACTGCGAATGATATG+GGG - chr8_4:47256140-47256159 Msa1329090:three_prime_UTR 45.0%
!! ATTTTGGCAAGAGTGATCGG+TGG - chr8_4:47257021-47257040 Msa1329090:intron 45.0%
!! TAGCGGTTGTGTTTGTTGTC+TGG - chr8_4:47257476-47257495 Msa1329090:intron 45.0%
GTGGTCCAATTCCAAAATGG+CGG - chr8_4:47257533-47257552 Msa1329090:intron 45.0%
!!! TGGAACCGCCATTTTGGAAT+TGG + chr8_4:47257541-47257560 None:intergenic 45.0%
CGCATATGTCGTGAATCCTA+AGG - chr8_4:47258006-47258025 Msa1329090:CDS 45.0%
TGCTTAAGAGGATCCATTGC+CGG - chr8_4:47258468-47258487 Msa1329090:CDS 45.0%
! ATCTAGGTTTTCTCTGGTGC+AGG + chr8_4:47258623-47258642 None:intergenic 45.0%
AATACGGAACCCTACCCATT+TGG - chr8_4:47258788-47258807 Msa1329090:intron 45.0%
ACCCTACCCATTTGGAAAAG+TGG - chr8_4:47258796-47258815 Msa1329090:intron 45.0%
GTTGAAACGCGAGAAATTGG+AGG + chr8_4:47259286-47259305 None:intergenic 45.0%
! AAGCTGCAATTCGGCACTTT+TGG - chr8_4:47259330-47259349 Msa1329090:intron 45.0%
AGCCACTTAAAAGGCTCAGA+AGG + chr8_4:47259734-47259753 None:intergenic 45.0%
TCGCTCACTGTGAGTTTCAA+TGG - chr8_4:47259831-47259850 Msa1329090:intron 45.0%
GAGATAAAGGCCAGTGAAGA+TGG + chr8_4:47260060-47260079 None:intergenic 45.0%
GGCCTTTATCTCCTCTTGTT+TGG - chr8_4:47260068-47260087 Msa1329090:intron 45.0%
AAGCAGATGAGCCAAACAAG+AGG + chr8_4:47260082-47260101 None:intergenic 45.0%
GAAGAACAGTTCCACCAAAG+TGG + chr8_4:47260127-47260146 None:intergenic 45.0%
GAATAAACAACGGGAGGATG+AGG + chr8_4:47260151-47260170 None:intergenic 45.0%
ATCCTCCCGTTGTTTATTCC+TGG - chr8_4:47260152-47260171 Msa1329090:intron 45.0%
CGATGCCAGGAATAAACAAC+GGG + chr8_4:47260160-47260179 None:intergenic 45.0%
TTCCTGGCATCGTATATGCT+CGG - chr8_4:47260168-47260187 Msa1329090:intron 45.0%
TAATGCTGGAACCTTCTACC+CGG + chr8_4:47260226-47260245 None:intergenic 45.0%
! TTGTGATAGGATGATTGGCC+AGG - chr8_4:47260394-47260413 Msa1329090:intron 45.0%
!! AATGCTAGGAGAAGAGCACT+CGG - chr8_4:47260427-47260446 Msa1329090:intron 45.0%
! TACTTCTGTGGAGGTACGAT+TGG - chr8_4:47260497-47260516 Msa1329090:intron 45.0%
GGACAGATTGCTCAATCTCT+CGG - chr8_4:47260542-47260561 Msa1329090:intron 45.0%
GGATGCGTAGAGAGTAACAA+GGG + chr8_4:47260588-47260607 None:intergenic 45.0%
AGGATGCGTAGAGAGTAACA+AGG + chr8_4:47260589-47260608 None:intergenic 45.0%
GACGCAGTGAAAAAGGATAG+TGG + chr8_4:47260760-47260779 None:intergenic 45.0%
!! CTATCCTTTTTCACTGCGTC+TGG - chr8_4:47260760-47260779 Msa1329090:intron 45.0%
CATACCAGACGCAGTGAAAA+AGG + chr8_4:47260767-47260786 None:intergenic 45.0%
GTGACAAACAGGAACAGAGT+TGG - chr8_4:47260795-47260814 Msa1329090:intron 45.0%
ACTTGAACCAGATTGGAGAG+AGG + chr8_4:47260839-47260858 None:intergenic 45.0%
AATATCGTGCGAGAGAGAAG+AGG - chr8_4:47260901-47260920 Msa1329090:intron 45.0%
GCAAGCAAGAAGAACGCAAT+TGG + chr8_4:47261383-47261402 None:intergenic 45.0%
!! GCACTAATTGGGTTGAGTTC+TGG - chr8_4:47261440-47261459 Msa1329090:intron 45.0%
CTGTTTGGACCCAATAGTGT+AGG - chr8_4:47261500-47261519 Msa1329090:intron 45.0%
!! ACCGGGAAACTTGATAACGT+CGG - chr8_4:47261619-47261638 Msa1329090:intron 45.0%
TCCGACGTTATCAAGTTTCC+CGG + chr8_4:47261623-47261642 None:intergenic 45.0%
! TCGGACTCAGTAGTTTGCAT+GGG - chr8_4:47261638-47261657 Msa1329090:intron 45.0%
! ACTCAGTAGTTTGCATGGGA+AGG - chr8_4:47261642-47261661 Msa1329090:intron 45.0%
GACATGATGATCACCTGTAC+AGG - chr8_4:47261825-47261844 Msa1329090:intron 45.0%
CAATAATACAGAATGGCGCG+TGG - chr8_4:47262044-47262063 Msa1329090:CDS 45.0%
GAAGTTCTGCAGCCATGATT+TGG - chr8_4:47262075-47262094 Msa1329090:CDS 45.0%
!!! TCACCATTTTTTGGGGGTAG+GGG + chr8_4:47262372-47262391 None:intergenic 45.0%
!! ATATTAATAATAATTAAGAA+AGG + chr8_4:47256368-47256387 None:intergenic 5.0%
!!! TTTAATTAAAACTAATTTTT+TGG + chr8_4:47256850-47256869 None:intergenic 5.0%
!!! TTATAAAAGATAAAATATTT+TGG - chr8_4:47257759-47257778 Msa1329090:CDS 5.0%
!!! AATGATAAATATTTTTTTAA+AGG + chr8_4:47257855-47257874 None:intergenic 5.0%
!!! TTATTTATCTTTTTATAATA+AGG + chr8_4:47258985-47259004 None:intergenic 5.0%
!! CGCGTTTCGCTTTTAATGGC+GGG - chr8_4:47255983-47256002 Msa1329090:three_prime_UTR 50.0%
GCTGCGTTTATGGGGTTTCT+TGG - chr8_4:47256229-47256248 Msa1329090:three_prime_UTR 50.0%
GATCAGCATCAGCAACAACC+TGG - chr8_4:47256462-47256481 Msa1329090:three_prime_UTR 50.0%
CGGGATACTATGCAACTCAC+GGG + chr8_4:47256899-47256918 None:intergenic 50.0%
CCGGGATACTATGCAACTCA+CGG + chr8_4:47256900-47256919 None:intergenic 50.0%
CCGTGAGTTGCATAGTATCC+CGG - chr8_4:47256897-47256916 Msa1329090:CDS 50.0%
ACTAAAGAGGCCACCCCAAA+AGG + chr8_4:47258440-47258459 None:intergenic 50.0%
CGCGTTGAAACGCGAGAAAT+TGG + chr8_4:47259289-47259308 None:intergenic 50.0%
TAAGTGGCTGCAGCATATGC+TGG - chr8_4:47259745-47259764 Msa1329090:intron 50.0%
CGGTTGGCGAAGAATTGGAA+TGG + chr8_4:47259967-47259986 None:intergenic 50.0%
AAAGGCGGTTGGCGAAGAAT+TGG + chr8_4:47259972-47259991 None:intergenic 50.0%
! TCAGGAGGGAGAGGTTCTAA+AGG + chr8_4:47259990-47260009 None:intergenic 50.0%
TTAACTGCATCAGGAGGGAG+AGG + chr8_4:47259999-47260018 None:intergenic 50.0%
TCCCTCCTGATGCAGTTAAC+CGG - chr8_4:47260000-47260019 Msa1329090:intron 50.0%
TGGCTCATCTGCTTCTTCCA+TGG - chr8_4:47260088-47260107 Msa1329090:intron 50.0%
TGCCAGGAATAAACAACGGG+AGG + chr8_4:47260157-47260176 None:intergenic 50.0%
TCCTGGCATCGTATATGCTC+GGG - chr8_4:47260169-47260188 Msa1329090:intron 50.0%
CATCGTATATGCTCGGGCTT+GGG - chr8_4:47260175-47260194 Msa1329090:intron 50.0%
GTACCATCCATTCCAGCTTC+CGG - chr8_4:47260204-47260223 Msa1329090:intron 50.0%
TACCATCCATTCCAGCTTCC+GGG - chr8_4:47260205-47260224 Msa1329090:intron 50.0%
CTAGCATTGTCAGGTGATCC+TGG + chr8_4:47260415-47260434 None:intergenic 50.0%
CAGGATCACCTGACAATGCT+AGG - chr8_4:47260413-47260432 Msa1329090:intron 50.0%
GCTCTTCTCCTAGCATTGTC+AGG + chr8_4:47260424-47260443 None:intergenic 50.0%
CAAGCGGCCGAAAAACGAAA+AGG + chr8_4:47260609-47260628 None:intergenic 50.0%
! GGATAGTGGTGCATACGGAA+TGG + chr8_4:47260746-47260765 None:intergenic 50.0%
! AGAGGTGCACGTAGGATAAG+TGG + chr8_4:47260821-47260840 None:intergenic 50.0%
GTGCGAGAGAGAAGAGGAAT+AGG - chr8_4:47260907-47260926 Msa1329090:intron 50.0%
TGGGGCAACGAATACCTCTT+AGG + chr8_4:47260941-47260960 None:intergenic 50.0%
!! AAGAGGTATTCGTTGCCCCA+CGG - chr8_4:47260941-47260960 Msa1329090:intron 50.0%
! CCATGGGATTTTTACCCGTG+GGG + chr8_4:47260959-47260978 None:intergenic 50.0%
! GCCATGGGATTTTTACCCGT+GGG + chr8_4:47260960-47260979 None:intergenic 50.0%
! TGCCATGGGATTTTTACCCG+TGG + chr8_4:47260961-47260980 None:intergenic 50.0%
! AGATAACAGAGGGGTACACG+TGG - chr8_4:47261067-47261086 Msa1329090:intron 50.0%
! GATAACAGAGGGGTACACGT+GGG - chr8_4:47261068-47261087 Msa1329090:intron 50.0%
TGCCAGAGAACTGTCTGATG+CGG + chr8_4:47261405-47261424 None:intergenic 50.0%
AGTTCTCTGGCACTGCATAC+TGG - chr8_4:47261413-47261432 Msa1329090:intron 50.0%
! GTCGGACTCAGTAGTTTGCA+TGG - chr8_4:47261637-47261656 Msa1329090:intron 50.0%
! TGGGAAGGCAATGCTACTTC+TGG - chr8_4:47261657-47261676 Msa1329090:intron 50.0%
ATCAAGAGGCGGCGATGATA+AGG - chr8_4:47261933-47261952 Msa1329090:intron 50.0%
ATGGCTGCAGAACTTCCAGA+AGG + chr8_4:47262071-47262090 None:intergenic 50.0%
! TGACCTTGTTTGAGGCATGC+TGG - chr8_4:47262145-47262164 Msa1329090:CDS 50.0%
GATCCAGCATGCCTCAAACA+AGG + chr8_4:47262151-47262170 None:intergenic 50.0%
!!! ACCATTTTTTGGGGGTAGGG+GGG + chr8_4:47262370-47262389 None:intergenic 50.0%
!!! CACCATTTTTTGGGGGTAGG+GGG + chr8_4:47262371-47262390 None:intergenic 50.0%
TGGCGGGACAATCACGGAAA+TGG - chr8_4:47255999-47256018 Msa1329090:three_prime_UTR 55.0%
! ATGAGGTCAGTAGCGGAGCT+AGG - chr8_4:47256665-47256684 Msa1329090:CDS 55.0%
GGTCAGTGGTAACCGCTAAC+CGG - chr8_4:47259600-47259619 Msa1329090:intron 55.0%
! CTGGCTTAGCTACCGGTTAG+CGG + chr8_4:47259615-47259634 None:intergenic 55.0%
ACCAGTCCTGGCTTAGCTAC+CGG + chr8_4:47259622-47259641 None:intergenic 55.0%
!! GGAGAGGTTCTAAAGGCGGT+TGG + chr8_4:47259983-47260002 None:intergenic 55.0%
!! GGAGGGAGAGGTTCTAAAGG+CGG + chr8_4:47259987-47260006 None:intergenic 55.0%
CCCGGTTAACTGCATCAGGA+GGG + chr8_4:47260004-47260023 None:intergenic 55.0%
CCCTCCTGATGCAGTTAACC+GGG - chr8_4:47260001-47260020 Msa1329090:intron 55.0%
TCCCGGTTAACTGCATCAGG+AGG + chr8_4:47260005-47260024 None:intergenic 55.0%
GAGTCCCGGTTAACTGCATC+AGG + chr8_4:47260008-47260027 None:intergenic 55.0%
CTTCTTCCATGGCTTCAGCC+CGG - chr8_4:47260099-47260118 Msa1329090:intron 55.0%
AGTTCCACCAAAGTGGAGCC+GGG + chr8_4:47260120-47260139 None:intergenic 55.0%
CAGTTCCACCAAAGTGGAGC+CGG + chr8_4:47260121-47260140 None:intergenic 55.0%
GCATCGTATATGCTCGGGCT+TGG - chr8_4:47260174-47260193 Msa1329090:intron 55.0%
TACCCGGAAGCTGGAATGGA+TGG + chr8_4:47260210-47260229 None:intergenic 55.0%
CTTCTACCCGGAAGCTGGAA+TGG + chr8_4:47260214-47260233 None:intergenic 55.0%
CATTCCAGCTTCCGGGTAGA+AGG - chr8_4:47260212-47260231 Msa1329090:intron 55.0%
CTGGACCGGACTATGTTCGT+AGG - chr8_4:47260636-47260655 Msa1329090:intron 55.0%
! GATTGGAGAGAGGTGCACGT+AGG + chr8_4:47260829-47260848 None:intergenic 55.0%
ACGTGCACCTCTCTCCAATC+TGG - chr8_4:47260829-47260848 Msa1329090:intron 55.0%
!! AGAGGTATTCGTTGCCCCAC+GGG - chr8_4:47260942-47260961 Msa1329090:intron 55.0%
CCCCACGGGTAAAAATCCCA+TGG - chr8_4:47260956-47260975 Msa1329090:intron 55.0%
! AGGGGTACACGTGGGATAAG+TGG - chr8_4:47261076-47261095 Msa1329090:intron 55.0%
TGCCGCATCAGACAGTTCTC+TGG - chr8_4:47261400-47261419 Msa1329090:intron 55.0%
TGCCCATGCACACTCAACAC+CGG - chr8_4:47261601-47261620 Msa1329090:intron 55.0%
! TCCCGGTGTTGAGTGTGCAT+GGG + chr8_4:47261606-47261625 None:intergenic 55.0%
! TTCCCGGTGTTGAGTGTGCA+TGG + chr8_4:47261607-47261626 None:intergenic 55.0%
TGGGGATGCACATCTGTCGT+GGG - chr8_4:47261692-47261711 Msa1329090:intron 55.0%
ATGCACATCTGTCGTGGGAC+TGG - chr8_4:47261697-47261716 Msa1329090:intron 55.0%
TGCACATCTGTCGTGGGACT+GGG - chr8_4:47261698-47261717 Msa1329090:intron 55.0%
CTGCTTCTCAACGCCTGTAC+AGG + chr8_4:47261841-47261860 None:intergenic 55.0%
!!! ATTTTTTGGGGGTAGGGGGG+AGG + chr8_4:47262367-47262386 None:intergenic 55.0%
TCCCCCCTACCCCCAAAAAA+TGG - chr8_4:47262366-47262385 Msa1329090:CDS 55.0%
CGCTAACCGGTAGCTAAGCC+AGG - chr8_4:47259613-47259632 Msa1329090:intron 60.0%
ACCGGTAGCTAAGCCAGGAC+TGG - chr8_4:47259618-47259637 Msa1329090:intron 60.0%
GCCCGAGCATATACGATGCC+AGG + chr8_4:47260173-47260192 None:intergenic 60.0%
GGAACCTTCTACCCGGAAGC+TGG + chr8_4:47260219-47260238 None:intergenic 60.0%
!! AGGAGAAGAGCACTCGGCTG+CGG - chr8_4:47260433-47260452 Msa1329090:intron 60.0%
TTCGGCCGCTTGCTTTCAGC+TGG - chr8_4:47260617-47260636 Msa1329090:intron 60.0%
CCGGTCCAGCTGAAAGCAAG+CGG + chr8_4:47260625-47260644 None:intergenic 60.0%
CCGCTTGCTTTCAGCTGGAC+CGG - chr8_4:47260622-47260641 Msa1329090:intron 60.0%
GCCCATGCACACTCAACACC+GGG - chr8_4:47261602-47261621 Msa1329090:intron 60.0%
GTGGGGATGCACATCTGTCG+TGG - chr8_4:47261691-47261710 Msa1329090:intron 60.0%
AGAATGGCGCGTGGTCCTTC+TGG - chr8_4:47262053-47262072 Msa1329090:CDS 60.0%
GCTTCAGCCCGGCTCCACTT+TGG - chr8_4:47260110-47260129 Msa1329090:intron 65.0%
TCAGCCCGGCTCCACTTTGG+TGG - chr8_4:47260113-47260132 Msa1329090:intron 65.0%
GTGGAGCCGGGCTGAAGCCA+TGG + chr8_4:47260108-47260127 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 47255860 47262454 47255860 ID=Msa1329090;Name=Msa1329090
chr8_4 mRNA 47255860 47262454 47255860 ID=Msa1329090-mRNA-1;Parent=Msa1329090;Name=Msa1329090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.66|1|1|1|3|646|619
chr8_4 exon 47255860 47256986 47255860 ID=Msa1329090-mRNA-1:exon:13583;Parent=Msa1329090-mRNA-1
chr8_4 exon 47257657 47258588 47257657 ID=Msa1329090-mRNA-1:exon:13582;Parent=Msa1329090-mRNA-1
chr8_4 exon 47262008 47262454 47262008 ID=Msa1329090-mRNA-1:exon:13581;Parent=Msa1329090-mRNA-1
chr8_4 CDS 47262008 47262454 47262008 ID=Msa1329090-mRNA-1:cds;Parent=Msa1329090-mRNA-1
chr8_4 CDS 47257657 47258588 47257657 ID=Msa1329090-mRNA-1:cds;Parent=Msa1329090-mRNA-1
chr8_4 CDS 47256506 47256986 47256506 ID=Msa1329090-mRNA-1:cds;Parent=Msa1329090-mRNA-1
chr8_4 three_prime_UTR 47255860 47256505 47255860 ID=Msa1329090-mRNA-1:three_prime_utr;Parent=Msa1329090-mRNA-1
Gene Sequence

>Msa1329090

ATGAGGCCACGCAGAGACAACGATAGAAACAACATCAATAACAGATTCAATTATTTCAATTCAAATTCCAACAATCTCGAAGAATCACCAAAATCACGTCGAAGAATCCCTTTTCTAAATAATCGCGTTTCGCTTTTAATGGCGGGACAATCACGGAAATGGATGATCCTTGTCGTTACGATATGGATTCAAGCATTTACAGGAACGAATTTCGATTTCTCTCAATATTCATCGTCGTTGAAATCTGCTCTTCAAATCTCACAGGTTCAGCTGAATTATTTGGCTACTGCGAATGATATGGGGAAGATTTTCGGTTGGTCTTCTGGTTTAGCTCTTATGCATCTTCCTGTTTCGGCTGTTATGTTCATTGCTGCGTTTATGGGGTTTCTTGGTTATGGGGTTCAATGGCTTCTCATTAATCATTTCATTTCTTTGCCTTATTTTCTGGTGTTCCTTCTGAGCCTTTTAAGTGGCTGCAGCATATGCTGGTTCAACACAGTATGTTTTATTCTCTGCATTAGGAATTTTCCAGTTAACCGAACACTTGCATTATCGCTCACTGTGAGTTTCAATGGTGTCAGTGCGGCCCTTTACACCCTTGCTGCAAATTCAATAGACCCATCATCTGACTCGTTGTATCTTCTTTTGAATGCTCTTGTTCCTCTTTTTGTTTGCATTGCAGCGACCATTCCAATTCTTCGCCAACCGCCTTTAGAACCTCTCCCTCCTGATGCAGTTAACCGGGACTCACTAGTATTTCTAATCTTGAACTTCTTAGCCATCTTCACTGGCCTTTATCTCCTCTTGTTTGGCTCATCTGCTTCTTCCATGGCTTCAGCCCGGCTCCACTTTGGTGGAACTGTTCTTCTCCTCATCCTCCCGTTGTTTATTCCTGGCATCGTATATGCTCGGGCTTGGGCTCAGCGTACCATCCATTCCAGCTTCCGGGTAGAAGGTTCCAGCATTATTCTTATTCATGATGATGATCTTGAGCTGCATAAAGAACTACTTAGCCGCCACAATAGTAGTATTGTTGGCAATGGAGATGGTTACAGTCTGCTAAGTGACAACGGATCCATGTTTTCAAGTCAGAAGGAAAGTGATAGTGATGTGTGTTGTGATAGGATGATTGGCCAGGATCACCTGACAATGCTAGGAGAAGAGCACTCGGCTGCGGTGATTGTCCGCAGATTAGACTTTTGGCTATACTACATCACATACTTCTGTGGAGGTACGATTGGTCTTGTCTATAGCAATAATCTGGGACAGATTGCTCAATCTCTCGGTCTGAAATCAAGTACTTCTACCCTTGTTACTCTCTACGCATCCTTTTCGTTTTTCGGCCGCTTGCTTTCAGCTGGACCGGACTATGTTCGTAGTAAGTTCTACTTTGCAAGAACTGGTTGGCTCTCCATTGCACTTATACCAACACCAATTGCGTTCTTCTTGCTTGCCGCATCAGACAGTTCTCTGGCACTGCATACTGGAACTGCACTAATTGGGTTGAGTTCTGGTTTCATATTTGCCGCTGCTGTTTCAGTTACATCTGAACTGTTTGGACCCAATAGTGTAGGTGTCAATCACAACATTCTCATAACAAATATCCCAATTGGTTCACTTCTCTATGGTTTTCTTGCTGCACTAGTTTATGATGCCCATGCACACTCAACACCGGGAAACTTGATAACGTCGGACTCAGTAGTTTGCATGGGAAGGCAATGCTACTTCTGGACATTTATCTGGTGGGGATGCACATCTGTCGTGGGACTGGGTTCTAGTACGCTGTTATTCCTAAGAACCAAATATGCGTATGAACATTTTGAGAACCACCGTATTTCAACGCAAGTTATTGTGCCTTAA
Protein sequence

>Msa1329090

MRPRRDNDRNNINNRFNYFNSNSNNLEESPKSRRRIPFLNNRVSLLMAGQSRKWMILVVTIWIQAFTGTNFDFSQYSSSLKSALQISQVQLNYLATANDMGKIFGWSSGLALMHLPVSAVMFIAAFMGFLGYGVQWLLINHFISLPYFLVFLLSLLSGCSICWFNTVCFILCIRNFPVNRTLALSLTVSFNGVSAALYTLAANSIDPSSDSLYLLLNALVPLFVCIAATIPILRQPPLEPLPPDAVNRDSLVFLILNFLAIFTGLYLLLFGSSASSMASARLHFGGTVLLLILPLFIPGIVYARAWAQRTIHSSFRVEGSSIILIHDDDLELHKELLSRHNSSIVGNGDGYSLLSDNGSMFSSQKESDSDVCCDRMIGQDHLTMLGEEHSAAVIVRRLDFWLYYITYFCGGTIGLVYSNNLGQIAQSLGLKSSTSTLVTLYASFSFFGRLLSAGPDYVRSKFYFARTGWLSIALIPTPIAFFLLAASDSSLALHTGTALIGLSSGFIFAAAVSVTSELFGPNSVGVNHNILITNIPIGSLLYGFLAALVYDAHAHSTPGNLITSDSVVCMGRQCYFWTFIWWGCTSVVGLGSSTLLFLRTKYAYEHFENHRISTQVIVP*