Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201260 | XP_003629221.1 | 90.141 | 142 | 14 | 0 | 1 | 142 | 1 | 142 | 4.89e-89 | 265 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201260 | sp|Q9SD11|IQD20_ARATH | 50.735 | 136 | 33 | 2 | 1 | 136 | 1 | 102 | 5.21e-33 | 115 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0788770 | Msa1201260 | 0.800447 | 1.435341e-48 | -8.615850e-47 |
| Msa0134610 | Msa1201260 | 0.825827 | 3.791702e-54 | -8.615850e-47 |
| Msa0475790 | Msa1201260 | 0.829800 | 4.203336e-55 | -8.615850e-47 |
| Msa1183030 | Msa1201260 | 0.809962 | 1.459814e-50 | -8.615850e-47 |
| Msa0574890 | Msa1201260 | 0.802082 | 6.641676e-49 | -8.615850e-47 |
| Msa0896970 | Msa1201260 | 0.817395 | 3.372082e-52 | -8.615850e-47 |
| Msa0930780 | Msa1201260 | 0.806405 | 8.357554e-50 | -8.615850e-47 |
| Msa0961690 | Msa1201260 | 0.800811 | 1.209405e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201260 | MtrunA17_Chr8g0371131 | 90.141 | 142 | 14 | 0 | 1 | 142 | 1 | 142 | 4.49e-93 | 265 |
| Msa1201260 | MtrunA17_Chr8g0346021 | 62.295 | 61 | 23 | 0 | 69 | 129 | 125 | 185 | 4.34e-18 | 79.3 |
| Msa1201260 | MtrunA17_Chr1g0204901 | 56.923 | 65 | 28 | 0 | 70 | 134 | 135 | 199 | 2.29e-17 | 77.4 |
| Msa1201260 | MtrunA17_Chr8g0389781 | 56.716 | 67 | 29 | 0 | 70 | 136 | 125 | 191 | 2.62e-17 | 77.0 |
| Msa1201260 | MtrunA17_Chr1g0203711 | 62.903 | 62 | 23 | 0 | 70 | 131 | 114 | 175 | 5.88e-17 | 76.3 |
| Msa1201260 | MtrunA17_Chr2g0330921 | 50.649 | 77 | 38 | 0 | 63 | 139 | 89 | 165 | 6.02e-17 | 75.9 |
| Msa1201260 | MtrunA17_Chr8g0340761 | 50.704 | 71 | 35 | 0 | 62 | 132 | 117 | 187 | 1.57e-16 | 74.7 |
| Msa1201260 | MtrunA17_Chr1g0200161 | 53.846 | 65 | 30 | 0 | 70 | 134 | 140 | 204 | 2.21e-16 | 74.7 |
| Msa1201260 | MtrunA17_Chr1g0146931 | 63.636 | 55 | 20 | 0 | 68 | 122 | 119 | 173 | 6.62e-16 | 73.2 |
| Msa1201260 | MtrunA17_Chr4g0020671 | 47.945 | 73 | 35 | 1 | 71 | 140 | 101 | 173 | 1.75e-15 | 72.0 |
| Msa1201260 | MtrunA17_Chr6g0472551 | 61.290 | 62 | 24 | 0 | 73 | 134 | 119 | 180 | 2.05e-15 | 71.6 |
| Msa1201260 | MtrunA17_Chr3g0126901 | 63.636 | 55 | 20 | 0 | 68 | 122 | 109 | 163 | 2.47e-15 | 71.6 |
| Msa1201260 | MtrunA17_Chr7g0273951 | 58.065 | 62 | 26 | 0 | 73 | 134 | 108 | 169 | 3.72e-15 | 70.9 |
| Msa1201260 | MtrunA17_Chr4g0060381 | 56.667 | 60 | 26 | 0 | 73 | 132 | 102 | 161 | 4.82e-15 | 70.9 |
| Msa1201260 | MtrunA17_Chr4g0025441 | 66.038 | 53 | 18 | 0 | 70 | 122 | 95 | 147 | 1.30e-14 | 69.3 |
| Msa1201260 | MtrunA17_Chr7g0273861 | 49.231 | 65 | 33 | 0 | 70 | 134 | 124 | 188 | 2.68e-14 | 68.6 |
| Msa1201260 | MtrunA17_Chr1g0156121 | 34.921 | 126 | 72 | 2 | 18 | 133 | 61 | 186 | 1.01e-13 | 67.0 |
| Msa1201260 | MtrunA17_Chr4g0057321 | 47.945 | 73 | 38 | 0 | 59 | 131 | 76 | 148 | 3.60e-13 | 65.5 |
| Msa1201260 | MtrunA17_Chr4g0045641 | 44.118 | 68 | 38 | 0 | 67 | 134 | 142 | 209 | 7.57e-13 | 64.3 |
| Msa1201260 | MtrunA17_Chr3g0135851 | 38.211 | 123 | 66 | 3 | 2 | 122 | 28 | 142 | 2.48e-12 | 62.8 |
| Msa1201260 | MtrunA17_Chr6g0462191 | 52.778 | 72 | 34 | 0 | 69 | 140 | 105 | 176 | 9.03e-12 | 61.2 |
| Msa1201260 | MtrunA17_Chr1g0166431 | 55.556 | 54 | 24 | 0 | 70 | 123 | 116 | 169 | 2.15e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1201260 | AT3G51380.1 | 50.735 | 136 | 33 | 2 | 1 | 136 | 1 | 102 | 5.29e-34 | 115 |
| Msa1201260 | AT3G49260.1 | 60.563 | 71 | 28 | 0 | 69 | 139 | 118 | 188 | 8.51e-21 | 87.4 |
| Msa1201260 | AT3G49260.4 | 60.563 | 71 | 28 | 0 | 69 | 139 | 118 | 188 | 8.51e-21 | 87.4 |
| Msa1201260 | AT3G49260.2 | 60.563 | 71 | 28 | 0 | 69 | 139 | 118 | 188 | 8.51e-21 | 87.4 |
| Msa1201260 | AT3G49260.3 | 60.563 | 71 | 28 | 0 | 69 | 139 | 118 | 188 | 8.53e-21 | 87.4 |
| Msa1201260 | AT1G01110.2 | 55.128 | 78 | 35 | 0 | 65 | 142 | 115 | 192 | 1.15e-19 | 84.3 |
| Msa1201260 | AT4G00820.1 | 58.108 | 74 | 31 | 0 | 69 | 142 | 130 | 203 | 3.20e-19 | 83.2 |
| Msa1201260 | AT4G14750.1 | 61.538 | 65 | 25 | 0 | 70 | 134 | 104 | 168 | 1.01e-18 | 81.3 |
| Msa1201260 | AT4G14750.3 | 61.538 | 65 | 25 | 0 | 70 | 134 | 163 | 227 | 1.21e-18 | 81.3 |
| Msa1201260 | AT4G14750.2 | 61.538 | 65 | 25 | 0 | 70 | 134 | 163 | 227 | 1.29e-18 | 81.3 |
| Msa1201260 | AT3G52290.1 | 54.286 | 70 | 32 | 0 | 70 | 139 | 107 | 176 | 1.14e-17 | 78.6 |
| Msa1201260 | AT3G59690.2 | 57.377 | 61 | 26 | 0 | 74 | 134 | 172 | 232 | 6.90e-16 | 73.6 |
| Msa1201260 | AT3G59690.1 | 57.377 | 61 | 26 | 0 | 74 | 134 | 172 | 232 | 6.90e-16 | 73.6 |
| Msa1201260 | AT1G51960.1 | 47.945 | 73 | 38 | 0 | 62 | 134 | 91 | 163 | 1.77e-15 | 72.0 |
| Msa1201260 | AT1G72670.1 | 53.968 | 63 | 29 | 0 | 69 | 131 | 91 | 153 | 1.81e-15 | 72.4 |
| Msa1201260 | AT5G07240.1 | 58.462 | 65 | 27 | 0 | 67 | 131 | 102 | 166 | 1.98e-15 | 72.0 |
| Msa1201260 | AT3G16490.1 | 53.846 | 65 | 30 | 0 | 70 | 134 | 106 | 170 | 3.32e-15 | 71.6 |
| Msa1201260 | AT1G17480.1 | 44.186 | 86 | 43 | 1 | 46 | 131 | 74 | 154 | 3.71e-15 | 71.2 |
| Msa1201260 | AT5G07240.2 | 58.462 | 65 | 27 | 0 | 67 | 131 | 148 | 212 | 3.82e-15 | 71.2 |
| Msa1201260 | AT4G10640.1 | 57.143 | 63 | 27 | 0 | 67 | 129 | 96 | 158 | 4.25e-15 | 71.2 |
| Msa1201260 | AT2G26180.1 | 52.113 | 71 | 29 | 1 | 52 | 122 | 70 | 135 | 5.00e-15 | 70.9 |
| Msa1201260 | AT1G18840.1 | 40.909 | 88 | 50 | 1 | 47 | 134 | 87 | 172 | 5.11e-15 | 71.2 |
| Msa1201260 | AT1G18840.3 | 40.909 | 88 | 50 | 1 | 47 | 134 | 87 | 172 | 5.11e-15 | 71.2 |
| Msa1201260 | AT1G18840.2 | 40.909 | 88 | 50 | 1 | 47 | 134 | 87 | 172 | 5.11e-15 | 71.2 |
| Msa1201260 | AT4G23060.1 | 53.846 | 65 | 30 | 0 | 71 | 135 | 167 | 231 | 1.75e-14 | 69.7 |
| Msa1201260 | AT5G13460.1 | 52.459 | 61 | 29 | 0 | 69 | 129 | 109 | 169 | 1.91e-14 | 69.3 |
| Msa1201260 | AT5G62070.1 | 61.017 | 59 | 23 | 0 | 67 | 125 | 113 | 171 | 2.42e-14 | 68.9 |
| Msa1201260 | AT5G03040.1 | 47.761 | 67 | 35 | 0 | 68 | 134 | 112 | 178 | 6.82e-14 | 67.8 |
| Msa1201260 | AT5G03040.3 | 47.761 | 67 | 35 | 0 | 68 | 134 | 112 | 178 | 6.82e-14 | 67.8 |
| Msa1201260 | AT5G03040.2 | 47.761 | 67 | 35 | 0 | 68 | 134 | 112 | 178 | 6.82e-14 | 67.8 |
| Msa1201260 | AT2G43680.1 | 48.387 | 62 | 32 | 0 | 73 | 134 | 325 | 386 | 8.97e-14 | 67.4 |
| Msa1201260 | AT2G43680.4 | 48.387 | 62 | 32 | 0 | 73 | 134 | 324 | 385 | 9.06e-14 | 67.4 |
| Msa1201260 | AT2G43680.2 | 48.387 | 62 | 32 | 0 | 73 | 134 | 324 | 385 | 9.06e-14 | 67.4 |
| Msa1201260 | AT2G43680.3 | 48.387 | 62 | 32 | 0 | 73 | 134 | 324 | 385 | 9.06e-14 | 67.4 |
| Msa1201260 | AT2G43680.5 | 48.387 | 62 | 32 | 0 | 73 | 134 | 324 | 385 | 9.06e-14 | 67.4 |
| Msa1201260 | AT3G22190.3 | 58.182 | 55 | 23 | 0 | 68 | 122 | 85 | 139 | 1.69e-13 | 66.6 |
| Msa1201260 | AT3G22190.2 | 58.182 | 55 | 23 | 0 | 68 | 122 | 85 | 139 | 1.69e-13 | 66.6 |
| Msa1201260 | AT3G22190.4 | 58.182 | 55 | 23 | 0 | 68 | 122 | 85 | 139 | 1.69e-13 | 66.6 |
| Msa1201260 | AT3G22190.1 | 58.182 | 55 | 23 | 0 | 68 | 122 | 85 | 139 | 1.69e-13 | 66.6 |
| Msa1201260 | AT1G14380.1 | 49.180 | 61 | 31 | 0 | 73 | 133 | 96 | 156 | 5.72e-13 | 65.1 |
| Msa1201260 | AT1G14380.3 | 49.180 | 61 | 31 | 0 | 73 | 133 | 96 | 156 | 5.72e-13 | 65.1 |
| Msa1201260 | AT1G14380.4 | 49.180 | 61 | 31 | 0 | 73 | 133 | 96 | 156 | 5.72e-13 | 65.1 |
| Msa1201260 | AT3G09710.1 | 37.113 | 97 | 53 | 2 | 52 | 140 | 81 | 177 | 6.92e-13 | 65.1 |
| Msa1201260 | AT3G09710.2 | 37.113 | 97 | 53 | 2 | 52 | 140 | 81 | 177 | 7.39e-13 | 64.7 |
| Msa1201260 | AT4G29150.1 | 50.000 | 68 | 34 | 0 | 68 | 135 | 128 | 195 | 8.80e-13 | 64.7 |
| Msa1201260 | AT1G14380.6 | 49.180 | 61 | 31 | 0 | 73 | 133 | 96 | 156 | 1.06e-12 | 64.3 |
| Msa1201260 | AT1G14380.5 | 49.180 | 61 | 31 | 0 | 73 | 133 | 96 | 156 | 1.06e-12 | 64.3 |
| Msa1201260 | AT1G14380.2 | 49.180 | 61 | 31 | 0 | 73 | 133 | 96 | 156 | 1.06e-12 | 64.3 |
| Msa1201260 | AT1G14380.7 | 49.180 | 61 | 31 | 0 | 73 | 133 | 96 | 156 | 1.57e-12 | 63.9 |
| Msa1201260 | AT1G74690.1 | 46.377 | 69 | 37 | 0 | 69 | 137 | 111 | 179 | 2.84e-12 | 63.2 |
| Msa1201260 | AT3G49380.1 | 58.065 | 62 | 26 | 0 | 66 | 127 | 105 | 166 | 3.55e-12 | 62.8 |
Find 32 sgRNAs with CRISPR-Local
Find 72 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAGATTCAAGCTTATTTC+AGG | 0.205987 | 8_1:+54446620 | Msa1201260:CDS |
| AACGATTCCCAACCATTTCT+TGG | 0.217793 | 8_1:-54446407 | None:intergenic |
| CAAAGCCAACAAATCATATT+TGG | 0.218301 | 8_1:+54446499 | Msa1201260:CDS |
| AAATGGTTATACTTACTAAT+TGG | 0.258617 | 8_1:-54446976 | None:intergenic |
| CATTTCCAAATATGATTTGT+TGG | 0.353157 | 8_1:-54446504 | None:intergenic |
| CATTTATATGAATATACGTT+TGG | 0.367352 | 8_1:+54447157 | Msa1201260:three_prime_UTR |
| CCTTGTGAAATTGCAAGCAT+TGG | 0.437449 | 8_1:+54446821 | Msa1201260:CDS |
| AATTGCAAGCATTGGTTCGC+GGG | 0.441109 | 8_1:+54446829 | Msa1201260:CDS |
| AAATGGGTGTATCCAAGAAA+TGG | 0.457505 | 8_1:+54446395 | None:intergenic |
| CAAGCTGAGTAAATCTTCTC+TGG | 0.466247 | 8_1:-54446539 | None:intergenic |
| TAAGATTCAAGCTTATTTCA+GGG | 0.474748 | 8_1:+54446621 | Msa1201260:CDS |
| GGTGTATCCAAGAAATGGTT+GGG | 0.495546 | 8_1:+54446400 | Msa1201260:CDS |
| GCAGGCAAGAAGAGCACATA+GGG | 0.496706 | 8_1:+54446788 | Msa1201260:intron |
| AAATTGCAAGCATTGGTTCG+CGG | 0.525909 | 8_1:+54446828 | Msa1201260:CDS |
| GAGTAAATCTTCTCTGGTGG+TGG | 0.527033 | 8_1:-54446533 | None:intergenic |
| CCAATGCTTGCAATTTCACA+AGG | 0.529073 | 8_1:-54446821 | None:intergenic |
| GAAAATATATGTCAACTAGT+TGG | 0.544271 | 8_1:-54447247 | None:intergenic |
| TGCAAACACTTATACATGGA+TGG | 0.548009 | 8_1:-54446471 | None:intergenic |
| TGGTTCGCGGGGTGTGTGTG+AGG | 0.555126 | 8_1:+54446841 | Msa1201260:CDS |
| TTTGTGCAAACACTTATACA+TGG | 0.556057 | 8_1:-54446475 | None:intergenic |
| GGGTGTATCCAAGAAATGGT+TGG | 0.579174 | 8_1:+54446399 | Msa1201260:CDS |
| AAGATTCAAGCTTATTTCAG+GGG | 0.590774 | 8_1:+54446622 | Msa1201260:CDS |
| ACTTGTTCGATTACAAGTCA+AGG | 0.596527 | 8_1:+54446899 | Msa1201260:CDS |
| TACAAGTCAAGGTTCGTGCA+AGG | 0.617179 | 8_1:+54446910 | Msa1201260:CDS |
| GAAGCATTAATATGTGGTGG+TGG | 0.625883 | 8_1:-54446562 | None:intergenic |
| GTTCGTGCAAGGCAATTACT+CGG | 0.631455 | 8_1:+54446921 | Msa1201260:CDS |
| ATTGCAAGCATTGGTTCGCG+GGG | 0.636033 | 8_1:+54446830 | Msa1201260:CDS |
| CAATGTGTACATATATTGTG+AGG | 0.636610 | 8_1:+54447114 | Msa1201260:three_prime_UTR |
| TTATATAATATTGAAAACTG+AGG | 0.638029 | 8_1:+54447013 | Msa1201260:three_prime_UTR |
| ATCAATGAAGCATTAATATG+TGG | 0.643274 | 8_1:-54446568 | None:intergenic |
| AGCAGGCAAGAAGAGCACAT+AGG | 0.644791 | 8_1:+54446787 | Msa1201260:intron |
| AATGAAGCATTAATATGTGG+TGG | 0.681570 | 8_1:-54446565 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTCAATATTATATAAAT+CGG | - | chr8_1:54447011-54447030 | None:intergenic | 10.0% |
| !!! | GTTTTCAATATTATATAAAT+CGG | - | chr8_1:54447011-54447030 | None:intergenic | 10.0% |
| !! | TTATATAATATTGAAAACTG+AGG | + | chr8_1:54447013-54447032 | Msa1201260:three_prime_UTR | 15.0% |
| !! | TTATATAATATTGAAAACTG+AGG | + | chr8_1:54447013-54447032 | Msa1201260:three_prime_UTR | 15.0% |
| !! | AAATGGTTATACTTACTAAT+TGG | - | chr8_1:54446979-54446998 | None:intergenic | 20.0% |
| !! | CATTTATATGAATATACGTT+TGG | + | chr8_1:54447157-54447176 | Msa1201260:three_prime_UTR | 20.0% |
| !! | AAATGGTTATACTTACTAAT+TGG | - | chr8_1:54446979-54446998 | None:intergenic | 20.0% |
| !! | CATTTATATGAATATACGTT+TGG | + | chr8_1:54447157-54447176 | Msa1201260:three_prime_UTR | 20.0% |
| !! | CATTTCCAAATATGATTTGT+TGG | - | chr8_1:54446507-54446526 | None:intergenic | 25.0% |
| !! | ATCAATGAAGCATTAATATG+TGG | - | chr8_1:54446571-54446590 | None:intergenic | 25.0% |
| ! | TTAAGATTCAAGCTTATTTC+AGG | + | chr8_1:54446620-54446639 | Msa1201260:CDS | 25.0% |
| ! | TAAGATTCAAGCTTATTTCA+GGG | + | chr8_1:54446621-54446640 | Msa1201260:CDS | 25.0% |
| ! | TAAATCGGATATGAGAAAAA+TGG | - | chr8_1:54446996-54447015 | None:intergenic | 25.0% |
| !! | CATTTCCAAATATGATTTGT+TGG | - | chr8_1:54446507-54446526 | None:intergenic | 25.0% |
| !! | ATCAATGAAGCATTAATATG+TGG | - | chr8_1:54446571-54446590 | None:intergenic | 25.0% |
| ! | TTAAGATTCAAGCTTATTTC+AGG | + | chr8_1:54446620-54446639 | Msa1201260:CDS | 25.0% |
| ! | TAAGATTCAAGCTTATTTCA+GGG | + | chr8_1:54446621-54446640 | Msa1201260:CDS | 25.0% |
| ! | TAAATCGGATATGAGAAAAA+TGG | - | chr8_1:54446996-54447015 | None:intergenic | 25.0% |
| !!! | TGTCTTTTTTGGATGATCTT+AGG | - | chr8_1:54446444-54446463 | None:intergenic | 30.0% |
| !!! | ATGGAGAGTTATGTCTTTTT+TGG | - | chr8_1:54446455-54446474 | None:intergenic | 30.0% |
| TTTGTGCAAACACTTATACA+TGG | - | chr8_1:54446478-54446497 | None:intergenic | 30.0% | |
| CAAAGCCAACAAATCATATT+TGG | + | chr8_1:54446499-54446518 | Msa1201260:CDS | 30.0% | |
| ! | AATGAAGCATTAATATGTGG+TGG | - | chr8_1:54446568-54446587 | None:intergenic | 30.0% |
| AAGATTCAAGCTTATTTCAG+GGG | + | chr8_1:54446622-54446641 | Msa1201260:CDS | 30.0% | |
| ACTATTGAATTGAATTGAGC+AGG | + | chr8_1:54446770-54446789 | Msa1201260:intron | 30.0% | |
| CAATGTGTACATATATTGTG+AGG | + | chr8_1:54447114-54447133 | Msa1201260:three_prime_UTR | 30.0% | |
| !!! | TGTCTTTTTTGGATGATCTT+AGG | - | chr8_1:54446444-54446463 | None:intergenic | 30.0% |
| !!! | ATGGAGAGTTATGTCTTTTT+TGG | - | chr8_1:54446455-54446474 | None:intergenic | 30.0% |
| TTTGTGCAAACACTTATACA+TGG | - | chr8_1:54446478-54446497 | None:intergenic | 30.0% | |
| CAAAGCCAACAAATCATATT+TGG | + | chr8_1:54446499-54446518 | Msa1201260:CDS | 30.0% | |
| ! | AATGAAGCATTAATATGTGG+TGG | - | chr8_1:54446568-54446587 | None:intergenic | 30.0% |
| AAGATTCAAGCTTATTTCAG+GGG | + | chr8_1:54446622-54446641 | Msa1201260:CDS | 30.0% | |
| ACTATTGAATTGAATTGAGC+AGG | + | chr8_1:54446770-54446789 | Msa1201260:intron | 30.0% | |
| CAATGTGTACATATATTGTG+AGG | + | chr8_1:54447114-54447133 | Msa1201260:three_prime_UTR | 30.0% | |
| TGCAAACACTTATACATGGA+TGG | - | chr8_1:54446474-54446493 | None:intergenic | 35.0% | |
| ACTTGTTCGATTACAAGTCA+AGG | + | chr8_1:54446899-54446918 | Msa1201260:CDS | 35.0% | |
| TGCAAACACTTATACATGGA+TGG | - | chr8_1:54446474-54446493 | None:intergenic | 35.0% | |
| ACTTGTTCGATTACAAGTCA+AGG | + | chr8_1:54446899-54446918 | Msa1201260:CDS | 35.0% | |
| GGTGTATCCAAGAAATGGTT+GGG | + | chr8_1:54446400-54446419 | Msa1201260:CDS | 40.0% | |
| AACGATTCCCAACCATTTCT+TGG | - | chr8_1:54446410-54446429 | None:intergenic | 40.0% | |
| CAAGCTGAGTAAATCTTCTC+TGG | - | chr8_1:54446542-54446561 | None:intergenic | 40.0% | |
| ! | GAAGCATTAATATGTGGTGG+TGG | - | chr8_1:54446565-54446584 | None:intergenic | 40.0% |
| CCAATGCTTGCAATTTCACA+AGG | - | chr8_1:54446824-54446843 | None:intergenic | 40.0% | |
| CCTTGTGAAATTGCAAGCAT+TGG | + | chr8_1:54446821-54446840 | Msa1201260:CDS | 40.0% | |
| !! | AAATTGCAAGCATTGGTTCG+CGG | + | chr8_1:54446828-54446847 | Msa1201260:CDS | 40.0% |
| GGTGTATCCAAGAAATGGTT+GGG | + | chr8_1:54446400-54446419 | Msa1201260:CDS | 40.0% | |
| AACGATTCCCAACCATTTCT+TGG | - | chr8_1:54446410-54446429 | None:intergenic | 40.0% | |
| CAAGCTGAGTAAATCTTCTC+TGG | - | chr8_1:54446542-54446561 | None:intergenic | 40.0% | |
| ! | GAAGCATTAATATGTGGTGG+TGG | - | chr8_1:54446565-54446584 | None:intergenic | 40.0% |
| CCAATGCTTGCAATTTCACA+AGG | - | chr8_1:54446824-54446843 | None:intergenic | 40.0% | |
| CCTTGTGAAATTGCAAGCAT+TGG | + | chr8_1:54446821-54446840 | Msa1201260:CDS | 40.0% | |
| !! | AAATTGCAAGCATTGGTTCG+CGG | + | chr8_1:54446828-54446847 | Msa1201260:CDS | 40.0% |
| GGGTGTATCCAAGAAATGGT+TGG | + | chr8_1:54446399-54446418 | Msa1201260:CDS | 45.0% | |
| GAGTAAATCTTCTCTGGTGG+TGG | - | chr8_1:54446536-54446555 | None:intergenic | 45.0% | |
| GCTGAGTAAATCTTCTCTGG+TGG | - | chr8_1:54446539-54446558 | None:intergenic | 45.0% | |
| !! | AATTGCAAGCATTGGTTCGC+GGG | + | chr8_1:54446829-54446848 | Msa1201260:CDS | 45.0% |
| TACAAGTCAAGGTTCGTGCA+AGG | + | chr8_1:54446910-54446929 | Msa1201260:CDS | 45.0% | |
| GTTCGTGCAAGGCAATTACT+CGG | + | chr8_1:54446921-54446940 | Msa1201260:CDS | 45.0% | |
| GGGTGTATCCAAGAAATGGT+TGG | + | chr8_1:54446399-54446418 | Msa1201260:CDS | 45.0% | |
| GAGTAAATCTTCTCTGGTGG+TGG | - | chr8_1:54446536-54446555 | None:intergenic | 45.0% | |
| GCTGAGTAAATCTTCTCTGG+TGG | - | chr8_1:54446539-54446558 | None:intergenic | 45.0% | |
| !! | AATTGCAAGCATTGGTTCGC+GGG | + | chr8_1:54446829-54446848 | Msa1201260:CDS | 45.0% |
| TACAAGTCAAGGTTCGTGCA+AGG | + | chr8_1:54446910-54446929 | Msa1201260:CDS | 45.0% | |
| GTTCGTGCAAGGCAATTACT+CGG | + | chr8_1:54446921-54446940 | Msa1201260:CDS | 45.0% | |
| ! | AGCAGGCAAGAAGAGCACAT+AGG | + | chr8_1:54446787-54446806 | Msa1201260:intron | 50.0% |
| ! | GCAGGCAAGAAGAGCACATA+GGG | + | chr8_1:54446788-54446807 | Msa1201260:intron | 50.0% |
| !! | ATTGCAAGCATTGGTTCGCG+GGG | + | chr8_1:54446830-54446849 | Msa1201260:CDS | 50.0% |
| ! | AGCAGGCAAGAAGAGCACAT+AGG | + | chr8_1:54446787-54446806 | Msa1201260:intron | 50.0% |
| ! | GCAGGCAAGAAGAGCACATA+GGG | + | chr8_1:54446788-54446807 | Msa1201260:intron | 50.0% |
| !! | ATTGCAAGCATTGGTTCGCG+GGG | + | chr8_1:54446830-54446849 | Msa1201260:CDS | 50.0% |
| TGGTTCGCGGGGTGTGTGTG+AGG | + | chr8_1:54446841-54446860 | Msa1201260:CDS | 65.0% | |
| TGGTTCGCGGGGTGTGTGTG+AGG | + | chr8_1:54446841-54446860 | Msa1201260:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 54446397 | 54447264 | 54446397 | ID=Msa1201260;Name=Msa1201260 |
| chr8_1 | mRNA | 54446397 | 54447264 | 54446397 | ID=Msa1201260-mRNA-1;Parent=Msa1201260;Name=Msa1201260-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|1|0.5|1|1|1|2|299|142 |
| chr8_1 | exon | 54446397 | 54446651 | 54446397 | ID=Msa1201260-mRNA-1:exon:17451;Parent=Msa1201260-mRNA-1 |
| chr8_1 | exon | 54446792 | 54447264 | 54446792 | ID=Msa1201260-mRNA-1:exon:17452;Parent=Msa1201260-mRNA-1 |
| chr8_1 | CDS | 54446397 | 54446651 | 54446397 | ID=Msa1201260-mRNA-1:cds;Parent=Msa1201260-mRNA-1 |
| chr8_1 | CDS | 54446792 | 54446965 | 54446792 | ID=Msa1201260-mRNA-1:cds;Parent=Msa1201260-mRNA-1 |
| chr8_1 | three_prime_UTR | 54446966 | 54447264 | 54446966 | ID=Msa1201260-mRNA-1:three_prime_utr;Parent=Msa1201260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
