AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0896970


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896970 MtrunA17_Chr6g0482061 94.650 486 26 0 1 486 1 486 0.0 916
Msa0896970 MtrunA17_Chr4g0042891 49.792 480 227 5 9 486 5 472 1.08e-155 451
Msa0896970 MtrunA17_Chr4g0042931 48.958 480 221 8 9 482 5 466 1.72e-151 440
Msa0896970 MtrunA17_Chr8g0347281 29.209 493 295 14 12 486 19 475 1.55e-51 182
Msa0896970 MtrunA17_Chr5g0442601 28.661 478 304 15 10 467 403 863 3.36e-50 184
Msa0896970 MtrunA17_Chr5g0442601 28.198 344 200 12 95 423 31 342 1.83e-32 131
Msa0896970 MtrunA17_Chr6g0462571 27.984 486 305 13 12 480 5 462 3.61e-49 175
Msa0896970 MtrunA17_Chr5g0442581 27.766 479 307 16 10 467 4 464 1.40e-48 175
Msa0896970 MtrunA17_Chr3g0079731 28.112 498 308 16 12 481 7 482 1.61e-48 174
Msa0896970 MtrunA17_Chr8g0347271 28.398 493 299 14 12 486 20 476 2.02e-48 173
Msa0896970 MtrunA17_Chr1g0153451 27.479 484 312 11 11 480 6 464 3.17e-48 172
Msa0896970 MtrunA17_Chr6g0486251 29.114 474 281 17 12 464 7 446 4.86e-48 172
Msa0896970 MtrunA17_Chr6g0486201 29.114 474 281 17 12 464 7 446 4.86e-48 172
Msa0896970 MtrunA17_Chr5g0448521 28.092 477 295 16 12 467 6 455 4.23e-47 169
Msa0896970 MtrunA17_Chr6g0462551 27.105 487 311 16 12 480 5 465 7.88e-47 169
Msa0896970 MtrunA17_Chr8g0336741 27.686 484 312 13 11 480 13 472 8.32e-47 169
Msa0896970 MtrunA17_Chr6g0449931 30.580 448 277 14 10 445 5 430 9.58e-47 169
Msa0896970 MtrunA17_Chr5g0429681 29.400 483 296 19 10 476 43 496 3.01e-46 168
Msa0896970 MtrunA17_Chr6g0459311 28.361 476 282 16 12 464 14 453 3.36e-46 167
Msa0896970 MtrunA17_Chr5g0429711 29.243 489 306 17 1 478 1 460 5.37e-46 166
Msa0896970 MtrunA17_Chr5g0442521 28.542 480 301 17 10 467 4 463 6.58e-45 164
Msa0896970 MtrunA17_Chr8g0335161 28.067 481 279 17 10 462 5 446 7.31e-45 163
Msa0896970 MtrunA17_Chr6g0462531 28.310 491 304 17 12 482 5 467 7.65e-45 163
Msa0896970 MtrunA17_Chr7g0275511 28.178 472 299 15 12 467 16 463 9.77e-45 163
Msa0896970 MtrunA17_Chr5g0442491 26.220 492 325 15 10 482 4 476 1.14e-44 163
Msa0896970 MtrunA17_Chr2g0302961 27.368 475 301 15 11 467 5 453 3.73e-44 161
Msa0896970 MtrunA17_Chr6g0462541 26.639 488 311 16 12 480 5 464 4.10e-44 161
Msa0896970 MtrunA17_Chr8g0335141 27.897 466 294 16 12 462 10 448 6.14e-44 161
Msa0896970 MtrunA17_Chr8g0336691 27.959 490 305 16 11 480 13 474 1.68e-42 162
Msa0896970 MtrunA17_Chr8g0336691 28.455 492 300 14 11 480 919 1380 1.10e-37 147
Msa0896970 MtrunA17_Chr8g0336691 25.581 473 310 12 11 480 480 913 2.43e-33 134
Msa0896970 MtrunA17_Chr8g0370941 28.000 500 288 19 10 467 7 476 3.05e-42 157
Msa0896970 MtrunA17_Chr8g0334861 27.685 419 266 10 82 479 61 463 8.69e-42 155
Msa0896970 MtrunA17_Chr8g0336731 30.025 393 242 12 106 483 119 493 9.63e-42 155
Msa0896970 MtrunA17_Chr8g0336651 27.664 488 315 14 9 480 779 1244 3.33e-41 158
Msa0896970 MtrunA17_Chr8g0336651 26.709 468 306 13 9 464 4 446 5.13e-38 148
Msa0896970 MtrunA17_Chr8g0336651 30.435 276 154 7 210 480 533 775 1.10e-26 114
Msa0896970 MtrunA17_Chr7g0232401 28.205 390 251 10 98 472 85 460 3.39e-41 153
Msa0896970 MtrunA17_Chr5g0442541 26.434 488 311 22 10 477 4 463 3.42e-41 153
Msa0896970 MtrunA17_Chr8g0339461 28.691 359 234 8 116 462 103 451 8.40e-41 152
Msa0896970 MtrunA17_Chr5g0442561 24.644 491 332 17 10 482 4 474 1.52e-40 152
Msa0896970 MtrunA17_Chr6g0462521 27.310 487 304 17 12 484 5 455 3.46e-40 150
Msa0896970 MtrunA17_Chr8g0339451 28.650 363 237 9 112 462 91 443 5.12e-40 150
Msa0896970 MtrunA17_Chr6g0454321 25.895 475 311 14 11 465 10 463 1.15e-39 152
Msa0896970 MtrunA17_Chr8g0336331 27.143 490 313 16 10 478 9 475 1.47e-39 149
Msa0896970 MtrunA17_Chr7g0232311 26.767 467 299 15 11 463 6 443 1.62e-39 149
Msa0896970 MtrunA17_Chr5g0418541 47.150 193 86 6 11 200 8 187 3.17e-39 141
Msa0896970 MtrunA17_Chr6g0454341 25.427 468 311 12 11 461 10 456 4.71e-39 147
Msa0896970 MtrunA17_Chr7g0232411 27.879 495 309 16 11 486 6 471 4.96e-39 147
Msa0896970 MtrunA17_Chr7g0232391 27.968 497 304 18 11 485 6 470 8.34e-39 147
Msa0896970 MtrunA17_Chr2g0302991 26.501 483 312 15 12 478 6 461 9.22e-39 146
Msa0896970 MtrunA17_Chr4g0053501 24.597 496 323 14 1 478 1 463 1.08e-38 147
Msa0896970 MtrunA17_Chr7g0232331 27.551 490 310 18 9 478 4 468 2.56e-38 145
Msa0896970 MtrunA17_Chr5g0431401 26.971 482 286 18 3 467 4 436 2.70e-38 145
Msa0896970 MtrunA17_Chr6g0464881 26.151 478 290 17 9 467 9 442 7.45e-38 144
Msa0896970 MtrunA17_Chr6g0454191 27.291 491 313 17 11 478 10 479 8.48e-38 144
Msa0896970 MtrunA17_Chr3g0121991 27.593 482 277 21 21 467 89 533 1.84e-37 144
Msa0896970 MtrunA17_Chr8g0339631 27.835 388 244 13 98 467 87 456 1.94e-37 143
Msa0896970 MtrunA17_Chr8g0373301 27.794 349 230 11 106 445 94 429 2.67e-37 142
Msa0896970 MtrunA17_Chr6g0454301 26.327 490 316 15 11 478 263 729 4.01e-37 145
Msa0896970 MtrunA17_Chr6g0454301 28.870 239 148 7 250 478 2 228 7.32e-20 93.2
Msa0896970 MtrunA17_Chr6g0454151 29.032 403 245 12 97 478 94 476 1.03e-36 141
Msa0896970 MtrunA17_Chr8g0339601 29.503 322 194 9 159 462 4 310 2.08e-36 137
Msa0896970 MtrunA17_Chr2g0278711 25.787 508 294 19 11 478 11 475 2.26e-36 140
Msa0896970 MtrunA17_Chr7g0243681 27.273 484 296 19 11 466 11 466 2.53e-36 140
Msa0896970 MtrunA17_Chr8g0334851 28.536 403 257 12 81 467 70 457 3.76e-36 139
Msa0896970 MtrunA17_Chr5g0442511 25.257 487 302 16 10 477 48 491 5.71e-36 139
Msa0896970 MtrunA17_Chr7g0232341 27.235 481 307 17 9 471 4 459 5.73e-36 139
Msa0896970 MtrunA17_Chr8g0377921 26.477 491 286 19 12 469 5 453 2.26e-35 137
Msa0896970 MtrunA17_Chr6g0464921 25.703 498 284 18 1 467 1 443 9.44e-35 135
Msa0896970 MtrunA17_Chr3g0122001 26.860 484 278 21 21 467 496 940 1.33e-34 138
Msa0896970 MtrunA17_Chr3g0122001 25.208 480 292 20 21 467 16 461 2.08e-31 128
Msa0896970 MtrunA17_Chr8g0377941 24.440 491 291 15 21 478 17 460 2.15e-34 134
Msa0896970 MtrunA17_Chr6g0454291 26.775 493 312 18 11 478 7 475 2.22e-34 134
Msa0896970 MtrunA17_Chr3g0098111 26.210 496 324 18 1 480 1 470 3.53e-34 134
Msa0896970 MtrunA17_Chr6g0454201 26.190 504 321 16 1 478 1 479 3.61e-34 134
Msa0896970 MtrunA17_Chr5g0426431 25.417 480 304 15 9 463 10 460 4.12e-34 134
Msa0896970 MtrunA17_Chr5g0414331 25.813 492 287 17 11 477 13 451 5.56e-34 133
Msa0896970 MtrunA17_Chr4g0050341 25.873 487 314 14 6 467 14 478 7.60e-34 133
Msa0896970 MtrunA17_Chr5g0431421 25.926 486 286 19 3 467 4 436 9.23e-34 132
Msa0896970 MtrunA17_Chr7g0265041 28.106 491 298 17 9 467 9 476 1.19e-33 133
Msa0896970 MtrunA17_Chr4g0044511 33.657 309 157 11 186 467 205 492 1.71e-33 132
Msa0896970 MtrunA17_Chr7g0235051 26.939 490 284 20 1 466 1 440 1.90e-33 132
Msa0896970 MtrunA17_Chr3g0078841 24.180 488 329 13 11 478 10 476 2.31e-33 132
Msa0896970 MtrunA17_Chr6g0453951 26.033 484 310 17 1 461 47 505 2.79e-33 132
Msa0896970 MtrunA17_Chr8g0366391 27.376 526 288 21 1 480 1 478 4.02e-33 131
Msa0896970 MtrunA17_Chr5g0414321 27.181 493 279 18 1 467 1 439 4.15e-33 130
Msa0896970 MtrunA17_Chr8g0361371 24.390 492 321 13 12 480 8 471 7.31e-33 130
Msa0896970 MtrunA17_Chr6g0454181 25.600 500 309 18 11 478 10 478 7.86e-33 130
Msa0896970 MtrunA17_Chr3g0112771 27.079 469 287 15 12 467 13 439 7.94e-33 130
Msa0896970 MtrunA17_Chr3g0118671 24.847 491 322 14 11 478 6 472 9.72e-33 130
Msa0896970 MtrunA17_Chr3g0092641 24.632 475 314 14 9 463 10 460 1.17e-32 129
Msa0896970 MtrunA17_Chr3g0118691 25.407 492 318 15 11 478 15 481 2.03e-32 129
Msa0896970 MtrunA17_Chr6g0454401 24.597 496 320 16 11 478 10 479 2.20e-32 129
Msa0896970 MtrunA17_Chr4g0011051 24.899 494 307 17 11 467 9 475 2.86e-32 129
Msa0896970 MtrunA17_Chr4g0014061 26.854 499 294 18 12 477 10 470 3.90e-32 128
Msa0896970 MtrunA17_Chr4g0066151 27.510 498 298 18 12 481 19 481 4.05e-32 128
Msa0896970 MtrunA17_Chr5g0431441 25.567 485 296 19 11 473 18 459 6.35e-32 127
Msa0896970 MtrunA17_Chr7g0217881 27.200 500 283 22 11 478 10 460 7.55e-32 127
Msa0896970 MtrunA17_Chr5g0431371 25.210 476 292 16 9 467 8 436 1.15e-31 126
Msa0896970 MtrunA17_Chr3g0118701 24.947 473 309 14 11 462 15 462 1.86e-31 126
Msa0896970 MtrunA17_Chr1g0207981 23.770 488 323 13 11 478 13 471 2.69e-31 125
Msa0896970 MtrunA17_Chr7g0243931 25.462 487 306 16 11 466 17 477 2.69e-31 126
Msa0896970 MtrunA17_Chr6g0454351 26.132 486 307 19 11 478 12 463 4.19e-31 125
Msa0896970 MtrunA17_Chr8g0359821 25.000 472 308 16 11 461 10 456 4.33e-31 125
Msa0896970 MtrunA17_Chr5g0431361 24.528 477 297 16 9 467 10 441 4.60e-31 125
Msa0896970 MtrunA17_Chr1g0161351 24.748 497 326 15 4 480 30 498 4.83e-31 125
Msa0896970 MtrunA17_Chr5g0420801 35.772 246 144 9 224 466 211 445 4.92e-31 125
Msa0896970 MtrunA17_Chr8g0334831 24.481 482 291 16 12 460 7 448 5.11e-31 125
Msa0896970 MtrunA17_Chr4g0044521 26.694 487 284 19 12 467 10 454 5.15e-31 125
Msa0896970 MtrunA17_Chr4g0066221 26.800 500 291 18 5 467 7 468 5.23e-31 125
Msa0896970 MtrunA17_Chr7g0243631 26.877 506 303 20 11 480 13 487 7.22e-31 125
Msa0896970 MtrunA17_Chr7g0243801 27.329 483 298 20 11 466 7 463 9.15e-31 124
Msa0896970 MtrunA17_Chr4g0044501 26.316 494 309 16 11 478 10 474 1.53e-30 124
Msa0896970 MtrunA17_Chr7g0265101 25.743 505 301 20 4 467 3 474 1.62e-30 124
Msa0896970 MtrunA17_Chr6g0454141 24.744 489 327 14 11 478 10 478 2.16e-30 123
Msa0896970 MtrunA17_Chr8g0374941 26.453 499 275 19 15 467 953 1405 3.16e-30 125
Msa0896970 MtrunA17_Chr8g0374941 26.946 501 280 18 15 477 15 467 9.47e-30 124
Msa0896970 MtrunA17_Chr8g0374941 26.775 493 268 20 15 462 480 924 1.24e-24 108
Msa0896970 MtrunA17_Chr7g0232351 27.020 396 254 12 11 394 6 378 3.49e-30 121
Msa0896970 MtrunA17_Chr6g0463891 24.561 513 325 16 1 480 2 485 5.30e-30 122
Msa0896970 MtrunA17_Chr6g0464841 25.200 500 301 20 1 478 1 449 5.40e-30 122
Msa0896970 MtrunA17_Chr7g0265151 32.222 270 147 10 223 467 213 471 6.59e-30 122
Msa0896970 MtrunA17_Chr3g0118771 24.590 488 327 13 11 478 21 487 7.40e-30 122
Msa0896970 MtrunA17_Chr6g0453961 23.447 499 322 16 11 478 19 488 7.84e-30 122
Msa0896970 MtrunA17_Chr4g0053321 25.427 468 292 15 21 467 36 467 9.12e-30 122
Msa0896970 MtrunA17_Chr8g0380531 23.482 494 309 16 11 480 10 458 9.22e-30 121
Msa0896970 MtrunA17_Chr5g0423981 24.481 482 302 15 11 478 10 443 1.33e-29 120
Msa0896970 MtrunA17_Chr6g0452771 26.585 410 250 15 96 478 93 478 1.35e-29 121
Msa0896970 MtrunA17_Chr5g0401721 24.033 491 305 17 12 478 9 455 1.54e-29 120
Msa0896970 MtrunA17_Chr6g0454331 24.699 498 318 18 11 478 7 477 1.63e-29 120
Msa0896970 MtrunA17_Chr4g0066261 24.649 499 288 16 14 467 14 469 1.73e-29 120
Msa0896970 MtrunA17_Chr3g0112761 26.813 455 288 15 21 466 18 436 1.84e-29 120
Msa0896970 MtrunA17_Chr3g0106251 28.421 285 171 8 199 473 26 287 2.03e-29 117
Msa0896970 MtrunA17_Chr6g0464871 25.697 502 298 20 1 479 13 462 2.42e-29 120
Msa0896970 MtrunA17_Chr1g0207861 25.657 495 308 19 10 478 7 467 3.16e-29 120
Msa0896970 MtrunA17_Chr1g0207831 29.930 284 166 9 210 480 201 464 3.46e-29 119
Msa0896970 MtrunA17_Chr5g0416821 25.703 498 303 18 12 480 15 474 3.48e-29 120
Msa0896970 MtrunA17_Chr1g0179901 25.494 506 310 19 11 478 16 492 3.85e-29 120
Msa0896970 MtrunA17_Chr3g0106231 28.028 289 171 8 199 473 180 445 5.43e-29 119
Msa0896970 MtrunA17_Chr5g0426401 28.276 290 178 8 186 462 20 292 6.23e-29 116
Msa0896970 MtrunA17_Chr5g0403641 26.349 482 280 17 11 467 59 490 1.06e-28 119
Msa0896970 MtrunA17_Chr6g0454261 25.657 495 315 15 11 478 10 478 1.07e-28 118
Msa0896970 MtrunA17_Chr3g0118661 25.780 481 307 17 11 467 13 467 1.14e-28 118
Msa0896970 MtrunA17_Chr7g0243771 33.460 263 151 11 220 466 208 462 1.29e-28 118
Msa0896970 MtrunA17_Chr7g0265051 25.198 504 305 19 3 467 2 472 1.37e-28 118
Msa0896970 MtrunA17_Chr8g0365811 25.610 492 304 15 21 484 505 962 1.65e-28 119
Msa0896970 MtrunA17_Chr8g0365811 25.223 448 280 16 21 443 19 436 1.97e-24 107
Msa0896970 MtrunA17_Chr5g0419771 25.347 505 311 18 11 478 36 511 2.03e-28 118
Msa0896970 MtrunA17_Chr5g0412111 26.033 484 292 20 11 467 5 449 2.26e-28 117
Msa0896970 MtrunA17_Chr7g0265141 29.841 315 191 9 185 478 179 484 3.48e-28 117
Msa0896970 MtrunA17_Chr6g0454121 25.887 479 296 17 11 461 10 457 3.83e-28 117
Msa0896970 MtrunA17_Chr5g0412101 25.873 487 291 19 11 467 12 458 3.94e-28 116
Msa0896970 MtrunA17_Chr6g0454211 25.306 490 323 17 11 478 297 765 4.80e-28 118
Msa0896970 MtrunA17_Chr6g0454211 27.313 227 114 6 186 403 61 245 4.07e-14 75.1
Msa0896970 MtrunA17_Chr8g0369341 31.366 322 188 13 166 478 166 463 5.05e-28 116
Msa0896970 MtrunA17_Chr4g0060511 25.146 513 298 21 1 466 1 474 5.79e-28 116
Msa0896970 MtrunA17_Chr7g0243781 32.558 258 153 8 223 467 214 463 8.56e-28 115
Msa0896970 MtrunA17_Chr1g0153461 33.333 213 128 4 279 480 4 213 9.55e-28 110
Msa0896970 MtrunA17_Chr7g0275681 26.600 500 307 20 9 478 10 479 9.89e-28 115
Msa0896970 MtrunA17_Chr7g0218791 23.491 464 313 14 11 466 5 434 1.09e-27 115
Msa0896970 MtrunA17_Chr6g0464861 24.506 506 298 16 1 479 1 449 1.23e-27 115
Msa0896970 MtrunA17_Chr5g0401851 27.254 488 292 20 14 467 13 471 1.40e-27 115
Msa0896970 MtrunA17_Chr5g0419761 27.347 490 291 21 11 464 9 469 1.43e-27 115
Msa0896970 MtrunA17_Chr7g0250001 25.051 491 273 20 11 467 6 435 2.11e-27 114
Msa0896970 MtrunA17_Chr1g0207951 26.196 397 239 16 113 486 754 1119 2.16e-27 116
Msa0896970 MtrunA17_Chr1g0207951 27.500 280 167 8 219 485 320 576 9.92e-26 111
Msa0896970 MtrunA17_Chr8g0339441 25.641 429 231 16 81 482 68 435 3.26e-27 113
Msa0896970 MtrunA17_Chr6g0454131 29.412 289 170 8 186 461 190 457 4.88e-27 113
Msa0896970 MtrunA17_Chr6g0463861 24.541 436 287 12 66 467 34 461 4.98e-27 113
Msa0896970 MtrunA17_Chr4g0066131 27.479 484 288 19 12 467 14 462 5.12e-27 113
Msa0896970 MtrunA17_Chr3g0118711 24.843 479 313 16 11 466 13 467 7.96e-27 113
Msa0896970 MtrunA17_Chr5g0410941 27.092 502 310 20 5 480 19 490 1.25e-26 112
Msa0896970 MtrunA17_Chr2g0307961 30.466 279 163 9 215 478 205 467 2.17e-26 111
Msa0896970 MtrunA17_Chr7g0243861 26.000 500 315 19 11 480 14 488 2.49e-26 111
Msa0896970 MtrunA17_Chr2g0294941 30.142 282 170 11 198 461 89 361 3.08e-26 110
Msa0896970 MtrunA17_Chr4g0066201 24.802 504 293 21 14 480 21 475 3.36e-26 111
Msa0896970 MtrunA17_Chr6g0454251 25.062 403 268 14 11 394 7 394 3.43e-26 110
Msa0896970 MtrunA17_Chr4g0066281 25.523 478 294 18 14 467 15 454 3.43e-26 111
Msa0896970 MtrunA17_Chr5g0431431 30.568 229 131 7 186 409 116 321 3.79e-26 109
Msa0896970 MtrunA17_Chr6g0454361 25.101 494 319 18 11 478 11 479 4.33e-26 110
Msa0896970 MtrunA17_Chr7g0243761 25.604 414 257 14 11 402 11 395 4.76e-26 110
Msa0896970 MtrunA17_Chr2g0294931 26.955 486 297 18 12 467 12 469 7.37e-26 110
Msa0896970 MtrunA17_Chr1g0159551 29.412 221 144 6 254 466 230 446 8.48e-26 109
Msa0896970 MtrunA17_Chr1g0207931 29.091 275 162 10 222 480 241 498 8.89e-26 110
Msa0896970 MtrunA17_Chr5g0412131 26.240 484 292 20 11 467 12 457 1.00e-25 109
Msa0896970 MtrunA17_Chr6g0454271 28.421 285 177 8 204 478 18 285 1.11e-25 106
Msa0896970 MtrunA17_Chr8g0374931 27.329 483 293 18 14 466 14 468 1.13e-25 109
Msa0896970 MtrunA17_Chr4g0044481 32.932 249 140 7 186 421 170 404 1.38e-25 108
Msa0896970 MtrunA17_Chr7g0218311 30.097 309 186 11 191 480 187 484 1.61e-25 109
Msa0896970 MtrunA17_Chr3g0118721 30.827 266 156 8 225 478 39 288 1.65e-25 106
Msa0896970 MtrunA17_Chr5g0393591 23.202 431 256 14 5 414 11 387 3.33e-25 108
Msa0896970 MtrunA17_Chr6g0454221 31.905 210 124 5 279 483 39 234 4.14e-25 105
Msa0896970 MtrunA17_Chr7g0243951 24.798 496 317 20 1 466 1 470 5.03e-25 107
Msa0896970 MtrunA17_Chr5g0442501 25.625 320 214 10 10 325 4 303 9.23e-25 104
Msa0896970 MtrunA17_Chr4g0032331 24.211 475 299 19 12 473 9 435 9.91e-25 106
Msa0896970 MtrunA17_Chr8g0350881 27.122 483 292 17 15 467 16 468 1.07e-24 107
Msa0896970 MtrunA17_Chr5g0416741 24.048 499 321 16 12 480 14 484 1.16e-24 106
Msa0896970 MtrunA17_Chr2g0294921 25.933 509 299 15 12 480 161 631 1.52e-24 107
Msa0896970 MtrunA17_Chr1g0173121 29.412 221 143 6 254 466 234 449 1.80e-24 105
Msa0896970 MtrunA17_Chr5g0432731 27.063 303 170 12 186 467 12 284 2.07e-24 103
Msa0896970 MtrunA17_Chr1g0207971 26.619 278 163 10 219 480 202 454 2.47e-24 105
Msa0896970 MtrunA17_Chr8g0374901 31.343 268 162 7 219 467 202 466 2.82e-24 105
Msa0896970 MtrunA17_Chr8g0382021 29.464 224 142 7 254 466 257 475 4.62e-24 105
Msa0896970 MtrunA17_Chr7g0241781 25.325 462 281 15 5 458 3 408 6.40e-24 103
Msa0896970 MtrunA17_Chr7g0243811 36.813 182 107 5 221 402 187 360 6.84e-24 103
Msa0896970 MtrunA17_Chr2g0329111 30.400 250 159 7 224 465 217 459 8.90e-24 103
Msa0896970 MtrunA17_Chr6g0463851 25.403 496 289 20 14 467 14 470 1.32e-23 103
Msa0896970 MtrunA17_Chr7g0249981 23.356 441 276 14 21 445 35 429 1.35e-23 103
Msa0896970 MtrunA17_Chr7g0243871 29.818 275 165 10 221 480 212 473 1.48e-23 103
Msa0896970 MtrunA17_Chr4g0066171 23.658 503 299 19 14 480 24 477 1.76e-23 103
Msa0896970 MtrunA17_Chr3g0079711 31.343 201 103 4 305 482 3 191 2.35e-23 97.4
Msa0896970 MtrunA17_Chr7g0243851 30.451 266 153 11 223 466 174 429 5.56e-23 101
Msa0896970 MtrunA17_Chr8g0361411 30.566 265 160 7 224 478 202 452 6.30e-23 101
Msa0896970 MtrunA17_Chr5g0409591 31.111 180 102 2 252 409 236 415 6.51e-23 101
Msa0896970 MtrunA17_Chr8g0355221 25.553 497 313 21 14 480 18 487 9.41e-23 101
Msa0896970 MtrunA17_Chr1g0165701 26.052 499 305 20 14 480 18 484 1.04e-22 100
Msa0896970 MtrunA17_Chr7g0241801 25.268 467 273 16 5 457 3 407 1.23e-22 100
Msa0896970 MtrunA17_Chr7g0218821 22.678 463 313 15 9 460 3 431 1.59e-22 100
Msa0896970 MtrunA17_Chr8g0367221 24.947 469 309 16 3 457 1280 1719 1.99e-22 101
Msa0896970 MtrunA17_Chr8g0367221 34.028 144 92 1 272 415 262 402 2.40e-22 101
Msa0896970 MtrunA17_Chr8g0367221 34.969 163 101 3 253 415 1032 1189 1.74e-20 95.5
Msa0896970 MtrunA17_Chr7g0249931 25.102 490 289 19 11 471 40 480 2.14e-22 100
Msa0896970 MtrunA17_Chr5g0428081 27.027 481 297 18 14 467 14 467 2.91e-22 99.8
Msa0896970 MtrunA17_Chr7g0265111 26.653 484 309 16 11 467 39 503 3.61e-22 99.8
Msa0896970 MtrunA17_Chr7g0218811 21.957 460 305 16 9 458 13 428 3.90e-22 99.0
Msa0896970 MtrunA17_Chr8g0374971 25.355 493 290 17 14 467 15 468 8.10e-22 98.2
Msa0896970 MtrunA17_Chr6g0454171 29.073 313 163 12 189 478 32 308 9.07e-22 95.9
Msa0896970 MtrunA17_Chr4g0072761 26.923 312 193 10 163 467 157 440 1.01e-21 97.8
Msa0896970 MtrunA17_Chr8g0355011 24.044 366 216 11 105 461 28 340 3.53e-21 95.1
Msa0896970 MtrunA17_Chr7g0243711 33.005 203 114 6 279 466 108 303 5.19e-21 94.0
Msa0896970 MtrunA17_Chr7g0243611 32.500 200 113 7 206 396 64 250 9.79e-21 92.4
Msa0896970 MtrunA17_Chr5g0440421 29.412 255 157 7 221 465 224 465 1.36e-20 94.7
Msa0896970 MtrunA17_Chr7g0243911 31.481 216 126 8 278 485 21 222 1.02e-19 87.8
Msa0896970 MtrunA17_Chr7g0249961 29.756 205 119 6 251 445 33 222 1.30e-19 88.6
Msa0896970 MtrunA17_Chr4g0072771 27.178 287 179 9 186 467 192 453 1.95e-19 90.9
Msa0896970 MtrunA17_Chr3g0118751 22.699 489 306 15 11 478 6 443 2.37e-18 87.4
Msa0896970 MtrunA17_Chr6g0454371 29.775 178 110 5 304 478 4 169 1.41e-17 80.5
Msa0896970 MtrunA17_Chr8g0336261 33.103 145 81 4 304 446 4 134 4.96e-17 77.8
Msa0896970 MtrunA17_Chr7g0218831 23.529 476 291 17 11 467 6 427 5.05e-17 83.2
Msa0896970 MtrunA17_Chr7g0218841 22.458 472 302 13 11 467 6 428 6.02e-17 83.2
Msa0896970 MtrunA17_Chr4g0029131 22.628 411 268 10 11 409 12 384 6.11e-17 84.0
Msa0896970 MtrunA17_Chr3g0079721 29.952 207 127 10 100 298 91 287 4.18e-16 79.0
Msa0896970 MtrunA17_Chr7g0231631 32.075 212 122 7 276 480 64 260 1.03e-15 77.4
Msa0896970 MtrunA17_Chr1g0196851 30.573 157 102 2 253 409 275 424 1.97e-15 78.6
Msa0896970 MtrunA17_Chr8g0357361 30.846 201 120 6 219 411 58 247 3.66e-15 75.5
Msa0896970 MtrunA17_Chr5g0448551 22.973 444 287 16 12 440 8 411 5.56e-15 77.0
Msa0896970 MtrunA17_Chr8g0334841 34.043 141 85 3 186 325 1 134 5.63e-15 72.8
Msa0896970 MtrunA17_Chr4g0066141 35.762 151 84 6 330 467 189 339 1.44e-14 75.1
Msa0896970 MtrunA17_Chr2g0278741 23.059 425 271 14 11 416 97 484 2.77e-14 75.1
Msa0896970 MtrunA17_Chr2g0278721 23.203 487 289 19 11 460 517 955 3.13e-14 75.5
Msa0896970 MtrunA17_Chr2g0278721 24.178 426 265 16 11 416 15 402 9.83e-14 73.9
Msa0896970 MtrunA17_Chr4g0040711 23.427 461 305 15 11 448 8 443 3.40e-14 74.7
Msa0896970 MtrunA17_Chr4g0069611 28.351 194 126 5 225 416 215 397 3.94e-14 74.3
Msa0896970 MtrunA17_Chr6g0449991 26.271 354 217 13 11 355 6 324 9.10e-14 72.4
Msa0896970 MtrunA17_Chr4g0029151 30.827 133 91 1 270 402 254 385 1.16e-13 73.2
Msa0896970 MtrunA17_Chr2g0319801 24.330 485 277 18 5 460 2 425 1.58e-13 72.4
Msa0896970 MtrunA17_Chr8g0337381 34.884 129 79 3 354 480 1 126 1.67e-13 67.8
Msa0896970 MtrunA17_Chr8g0336251 23.722 489 298 20 11 470 7 449 1.94e-13 72.4
Msa0896970 MtrunA17_Chr8g0336321 23.722 489 298 20 11 470 7 449 2.34e-13 72.0
Msa0896970 MtrunA17_Chr6g0466831 22.837 416 278 12 11 416 18 400 2.64e-13 72.0
Msa0896970 MtrunA17_Chr2g0319731 24.431 483 289 18 1 461 15 443 4.38e-13 71.2
Msa0896970 MtrunA17_Chr1g0207881 34.646 127 78 3 358 480 260 385 2.82e-12 68.2
Msa0896970 MtrunA17_Chr2g0319791 23.605 466 285 17 5 446 2 420 4.85e-12 67.8
Msa0896970 MtrunA17_Chr6g0466841 22.356 416 280 12 11 416 18 400 8.12e-12 67.4
Msa0896970 MtrunA17_Chr3g0092031 27.941 136 91 2 281 416 6 134 1.28e-11 63.9
Msa0896970 MtrunA17_Chr6g0464091 22.844 429 281 14 5 416 12 407 2.92e-11 65.5
Msa0896970 MtrunA17_Chr2g0319751 26.667 195 133 2 252 446 713 897 3.09e-11 65.9
Msa0896970 MtrunA17_Chr6g0453981 28.105 153 96 3 186 329 61 208 8.71e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0896970 AT3G21790.1 27.071 495 321 16 11 482 4 481 3.51e-47 171
Msa0896970 AT4G01070.1 27.837 467 299 14 11 464 8 449 1.18e-46 169
Msa0896970 AT3G16520.3 28.496 379 253 8 101 479 99 459 4.71e-46 167
Msa0896970 AT3G21780.1 27.088 491 316 17 11 482 4 471 5.99e-45 164
Msa0896970 AT2G29740.1 28.499 393 253 13 98 477 95 472 9.01e-45 164
Msa0896970 AT1G01390.1 28.193 415 263 10 1 404 1 391 9.82e-45 164
Msa0896970 AT1G07250.1 26.891 476 324 13 14 478 9 471 1.03e-44 164
Msa0896970 AT1G01420.2 27.637 474 310 11 1 464 1 451 1.36e-44 163
Msa0896970 AT1G01390.2 28.193 415 263 10 1 404 18 408 1.43e-44 163
Msa0896970 AT1G01420.1 27.802 464 302 11 11 464 8 448 2.27e-44 162
Msa0896970 AT3G21760.1 25.852 499 324 17 11 482 4 483 2.96e-44 162
Msa0896970 AT3G16520.2 28.926 363 240 8 101 463 99 443 5.82e-44 160
Msa0896970 AT2G29710.1 26.261 476 326 13 10 478 4 461 6.19e-44 161
Msa0896970 AT3G16520.1 28.926 363 240 8 101 463 99 443 6.59e-44 160
Msa0896970 AT1G07260.1 28.929 439 270 16 60 478 54 470 8.15e-43 158
Msa0896970 AT3G21800.1 25.873 487 323 16 12 478 6 474 1.29e-42 158
Msa0896970 AT2G29730.1 25.840 476 320 16 14 478 8 461 1.58e-41 154
Msa0896970 AT4G15280.1 25.052 483 333 14 11 478 4 472 1.72e-41 155
Msa0896970 AT4G15280.2 25.052 483 333 14 11 478 36 504 4.40e-41 154
Msa0896970 AT3G21750.1 25.103 486 324 15 11 478 4 467 1.75e-40 152
Msa0896970 AT1G78270.1 27.593 482 297 13 2 461 7 458 3.20e-40 151
Msa0896970 AT2G30140.2 27.917 480 283 20 11 474 13 445 2.15e-36 140
Msa0896970 AT2G30140.1 27.557 479 287 18 11 474 13 446 6.11e-36 139
Msa0896970 AT4G15260.1 26.503 366 232 11 134 478 4 353 6.14e-36 137
Msa0896970 AT2G36970.1 24.405 504 324 18 11 486 10 484 8.79e-36 139
Msa0896970 AT2G18570.1 26.316 475 307 15 11 467 5 454 1.19e-35 138
Msa0896970 AT3G50740.1 25.630 476 315 16 11 468 7 461 1.80e-35 138
Msa0896970 AT1G07240.1 28.818 347 222 11 136 470 133 466 1.94e-35 138
Msa0896970 AT2G31790.1 27.419 496 284 16 10 479 7 452 6.13e-35 136
Msa0896970 AT2G31750.1 26.514 479 286 17 21 479 18 450 7.74e-35 135
Msa0896970 AT4G36770.1 27.251 422 252 14 11 409 4 393 1.52e-34 135
Msa0896970 AT2G31750.2 26.514 479 286 17 21 479 18 450 1.96e-34 135
Msa0896970 AT1G22400.1 24.033 491 323 17 11 474 13 480 6.18e-34 134
Msa0896970 AT1G22380.1 26.721 494 305 19 11 474 13 479 1.05e-33 133
Msa0896970 AT2G36750.1 26.316 494 295 19 11 467 10 471 1.96e-33 132
Msa0896970 AT1G05680.1 25.979 485 283 17 10 467 5 440 3.69e-33 131
Msa0896970 AT4G15480.1 26.358 497 299 18 11 478 19 477 4.19e-33 131
Msa0896970 AT3G21560.1 24.554 505 313 17 4 478 5 471 5.30e-33 131
Msa0896970 AT2G29750.1 27.390 387 251 14 98 476 106 470 6.31e-33 131
Msa0896970 AT1G22360.1 24.262 474 313 16 11 462 10 459 1.09e-32 130
Msa0896970 AT5G26310.1 24.319 477 309 15 11 466 7 452 1.13e-31 127
Msa0896970 AT5G03490.1 29.495 495 274 23 11 480 19 463 1.23e-31 127
Msa0896970 AT2G36780.1 27.088 491 296 21 11 467 14 476 2.05e-31 127
Msa0896970 AT1G51210.1 28.884 457 268 17 11 454 20 432 4.55e-31 125
Msa0896970 AT5G66690.1 24.262 474 313 16 11 466 7 452 7.43e-31 125
Msa0896970 AT2G30150.2 26.122 490 293 18 9 478 11 451 1.06e-30 124
Msa0896970 AT2G18560.1 27.066 351 224 12 134 467 29 364 1.63e-30 122
Msa0896970 AT4G34131.1 28.600 507 303 17 3 479 2 479 1.70e-30 124
Msa0896970 AT1G22340.1 25.103 486 295 15 11 462 13 463 1.76e-30 124
Msa0896970 AT2G36770.1 25.152 493 303 17 11 467 14 476 1.91e-30 124
Msa0896970 AT4G14090.1 23.625 491 303 16 11 478 13 454 2.00e-30 123
Msa0896970 AT3G53160.1 25.048 519 319 23 4 483 3 490 2.42e-30 124
Msa0896970 AT1G05560.1 23.848 499 296 16 11 478 5 450 2.90e-30 123
Msa0896970 AT5G59590.1 27.176 471 288 18 10 467 9 437 3.68e-30 122
Msa0896970 AT1G05560.2 24.048 499 295 17 11 478 55 500 4.37e-30 123
Msa0896970 AT1G73880.1 29.352 494 273 22 4 467 7 454 4.50e-30 122
Msa0896970 AT5G59580.1 27.578 417 262 14 11 420 9 392 4.56e-30 122
Msa0896970 AT1G05675.1 25.413 484 287 18 10 467 5 440 6.77e-30 122
Msa0896970 AT2G23250.1 25.983 458 286 13 21 467 8 423 9.69e-30 121
Msa0896970 AT2G36800.1 24.390 492 309 15 11 467 12 475 2.95e-29 120
Msa0896970 AT4G34138.1 25.498 502 305 16 11 478 11 477 3.85e-29 120
Msa0896970 AT2G30150.1 25.826 484 290 18 15 478 1 435 5.28e-29 119
Msa0896970 AT2G23260.1 28.244 393 229 14 96 467 81 441 5.72e-29 119
Msa0896970 AT1G22360.2 23.786 412 277 13 11 403 10 403 6.52e-29 119
Msa0896970 AT5G14860.1 26.004 473 301 16 11 461 8 453 1.58e-28 118
Msa0896970 AT2G36760.1 25.051 487 311 19 11 467 14 476 2.17e-28 118
Msa0896970 AT4G15550.1 26.196 397 248 15 102 478 101 472 8.20e-28 116
Msa0896970 AT2G16890.2 24.359 468 320 11 11 467 9 453 1.67e-27 115
Msa0896970 AT2G28080.1 26.302 384 253 15 93 467 96 458 3.23e-27 114
Msa0896970 AT2G36790.1 25.247 507 299 18 4 467 6 475 8.66e-27 113
Msa0896970 AT2G43820.1 25.721 416 234 16 84 472 72 439 1.62e-26 112
Msa0896970 AT2G15480.1 33.708 267 155 9 224 478 223 479 1.75e-26 112
Msa0896970 AT2G43840.1 24.565 460 265 18 57 474 22 441 9.81e-26 109
Msa0896970 AT2G15480.2 32.130 277 156 9 224 478 223 489 2.12e-25 109
Msa0896970 AT3G46680.1 30.249 281 167 10 192 467 181 437 2.23e-25 108
Msa0896970 AT5G12890.1 28.669 293 186 10 185 465 184 465 2.59e-25 108
Msa0896970 AT2G43840.2 24.565 460 265 18 57 474 22 441 3.54e-25 108
Msa0896970 AT1G22370.2 23.399 406 281 11 11 403 13 401 3.79e-25 108
Msa0896970 AT4G15490.1 24.174 484 327 17 10 478 7 465 1.32e-24 107
Msa0896970 AT5G05860.1 25.163 461 307 11 11 467 9 435 1.78e-24 106
Msa0896970 AT5G05880.1 28.866 291 171 11 193 467 166 436 2.27e-24 105
Msa0896970 AT4G01070.2 28.438 320 202 11 11 325 8 305 2.72e-24 104
Msa0896970 AT2G15490.3 30.996 271 157 9 224 478 220 476 3.28e-24 105
Msa0896970 AT1G24100.1 24.440 491 304 18 10 477 10 456 6.19e-24 104
Msa0896970 AT1G10400.1 30.147 272 146 10 210 465 204 447 6.24e-24 104
Msa0896970 AT3G11340.1 24.359 468 279 15 21 467 19 432 6.63e-24 104
Msa0896970 AT1G05530.1 25.567 485 286 19 11 467 5 442 6.83e-24 104
Msa0896970 AT2G15490.1 31.365 271 159 9 224 478 220 479 9.05e-24 104
Msa0896970 AT2G16890.3 23.733 434 299 10 11 435 9 419 2.19e-23 102
Msa0896970 AT3G46690.1 29.836 305 185 10 123 420 107 389 2.42e-23 102
Msa0896970 AT5G38010.1 23.142 471 309 14 11 467 10 441 2.60e-23 102
Msa0896970 AT3G46660.1 31.839 223 129 7 252 467 237 443 3.14e-23 102
Msa0896970 AT3G55700.1 30.068 296 177 12 193 476 170 447 4.21e-23 102
Msa0896970 AT3G46700.1 24.026 462 308 15 11 467 9 432 6.05e-23 101
Msa0896970 AT2G26480.1 27.941 272 156 9 211 467 187 433 7.31e-23 101
Msa0896970 AT3G46670.1 29.615 260 162 9 212 467 194 436 7.32e-23 101
Msa0896970 AT3G53150.1 25.528 521 287 25 11 478 22 494 1.30e-22 101
Msa0896970 AT3G46650.1 26.647 334 222 10 145 474 113 427 1.89e-22 100
Msa0896970 AT5G49690.1 25.427 468 288 15 9 457 8 433 4.18e-22 99.4
Msa0896970 AT4G15500.1 22.899 476 318 16 11 469 9 452 6.49e-22 99.0
Msa0896970 AT4G34135.1 32.530 249 137 10 210 443 210 442 6.62e-22 99.0
Msa0896970 AT5G05900.1 30.962 239 133 8 225 453 212 428 6.66e-22 98.6
Msa0896970 AT5G05870.1 25.852 352 206 12 138 467 124 442 4.21e-21 96.3
Msa0896970 AT5G05890.1 28.629 248 157 8 224 467 209 440 1.40e-20 94.7
Msa0896970 AT5G37950.1 25.507 345 228 11 58 394 20 343 2.62e-20 92.8
Msa0896970 AT1G22370.1 27.074 229 145 6 186 403 14 231 3.78e-20 91.3
Msa0896970 AT5G37950.2 25.291 344 224 11 58 394 20 337 3.97e-20 92.0
Msa0896970 AT5G38040.1 24.429 438 273 16 21 445 20 412 2.13e-19 90.9
Msa0896970 AT3G55710.1 28.409 264 164 6 189 444 172 418 2.17e-19 91.3
Msa0896970 AT5G65550.1 29.167 192 123 3 225 416 220 398 3.02e-19 90.5
Msa0896970 AT5G17030.1 27.407 270 165 9 205 467 198 443 1.92e-18 88.2
Msa0896970 AT3G46720.1 24.893 466 295 16 11 467 9 428 2.05e-18 88.2
Msa0896970 AT5G17040.1 27.444 266 170 7 205 467 182 427 3.11e-18 87.4
Msa0896970 AT2G22590.1 30.890 191 123 4 225 415 224 405 1.48e-17 85.5
Msa0896970 AT5G17040.2 27.178 287 184 8 186 467 59 325 1.53e-17 84.3
Msa0896970 AT5G17050.1 25.843 267 169 8 205 466 201 443 1.77e-17 85.1
Msa0896970 AT1G06000.1 27.799 259 160 9 223 467 176 421 1.99e-17 84.7
Msa0896970 AT3G02100.1 21.231 471 318 15 11 463 13 448 1.48e-15 79.3
Msa0896970 AT5G54010.1 29.143 175 110 4 276 446 245 409 3.06e-13 72.0
Msa0896970 AT1G30530.1 24.913 289 186 9 186 467 174 438 1.76e-12 69.7
Msa0896970 AT5G53990.1 31.183 186 109 6 281 457 244 419 6.32e-12 67.8
Msa0896970 AT1G64910.1 26.168 214 134 7 253 457 221 419 7.96e-12 67.8
Msa0896970 AT2G22930.1 25.000 236 152 7 253 479 221 440 2.48e-11 66.2
Msa0896970 AT3G22250.1 23.480 477 288 20 12 455 9 441 2.57e-11 66.2
Msa0896970 AT4G27570.1 29.714 175 109 5 253 423 227 391 6.03e-11 65.1
Msa0896970 AT5G54060.1 26.415 159 108 3 252 409 243 393 6.48e-11 64.7

Find 140 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGAGTTAGAGAATGTATT+AGG 0.151164 6_1:-88176633 Msa0896970:CDS
TACAGAATCCGCGCAATTAT+TGG 0.204541 6_1:+88176824 None:intergenic
TTAACACCGTTGATCCATTT+TGG 0.214755 6_1:-88178469 Msa0896970:CDS
TTGCCTCCTGTTTATGCTAT+TGG 0.223283 6_1:-88177975 Msa0896970:CDS
AAAGGAGGTAATGAAGATTT+TGG 0.243217 6_1:+88178146 None:intergenic
TTGTTAGAATTGAAGGTAAA+AGG 0.247315 6_1:+88178411 None:intergenic
TCTCTTTGAAAAGATACTTA+TGG 0.292904 6_1:-88178105 Msa0896970:CDS
ACGTTAATCGATGGATTTAA+AGG 0.297383 6_1:+88178491 None:intergenic
CATAAACCACTGACCCTTTA+GGG 0.302975 6_1:+88176781 None:intergenic
GCTGAATTATTTCTTCGTTA+TGG 0.310006 6_1:-88178635 Msa0896970:CDS
TGTTAGTTTGATTTCACCTT+TGG 0.311642 6_1:-88178336 Msa0896970:CDS
ACATAAACCACTGACCCTTT+AGG 0.314999 6_1:+88176780 None:intergenic
CCATGAAGCTTTCTAAGTTT+AGG 0.318503 6_1:+88178074 None:intergenic
GTAGCTTTCCTTCCAAGTTC+AGG 0.320908 6_1:-88178689 Msa0896970:CDS
TGTTTATGCTATTGGTCCTT+TGG 0.332059 6_1:-88177967 Msa0896970:CDS
GTTTCGAACTGAAGCCAAAA+TGG 0.334545 6_1:+88178455 None:intergenic
CAAATAAAAGATATGGCTAA+TGG 0.334800 6_1:-88176723 Msa0896970:CDS
GGGTTTGGCCAGAGGGGTGG+GGG 0.340197 6_1:-88176392 Msa0896970:CDS
TTAACTTGTGTCCTAAGGTT+TGG 0.344016 6_1:+88178826 None:intergenic
GGGGTTTGGCCAGAGGGGTG+GGG 0.344058 6_1:-88176393 Msa0896970:CDS
GCTAAAGAGACTGTTGGTTT+TGG 0.354828 6_1:+88178590 None:intergenic
AAGAGTTAGAGAATGTATTA+GGG 0.357828 6_1:-88176632 Msa0896970:CDS
AGGGTATGATTATAAACAAA+TGG 0.366656 6_1:-88176581 Msa0896970:CDS
TATGAACTCGTTTGAAGAAC+TGG 0.375617 6_1:-88178045 Msa0896970:CDS
ATTGTCAAAATTCAACTGTC+TGG 0.380135 6_1:-88178868 Msa0896970:five_prime_UTR
TTCACCTTTGGTTTCCATCA+TGG 0.381575 6_1:-88178324 Msa0896970:CDS
CGTTAATCGATGGATTTAAA+GGG 0.383311 6_1:+88178492 None:intergenic
CCTAAACTTAGAAAGCTTCA+TGG 0.389128 6_1:-88178074 Msa0896970:CDS
TTTGGTATTGGTGCAATTCC+AGG 0.398487 6_1:+88178164 None:intergenic
AATGATGGGAAAGTTGTTCC+TGG 0.408245 6_1:-88177999 Msa0896970:CDS
ATTCAATAGTAGAAGCTGTT+TGG 0.412964 6_1:-88176494 Msa0896970:CDS
GCGGGATCAAATAAAAGATA+TGG 0.413504 6_1:-88176730 Msa0896970:CDS
GTCAGTGGTTTATGTTTGCT+TGG 0.415089 6_1:-88176772 Msa0896970:CDS
AAACAAATGGGTAAATCAAA+TGG 0.416881 6_1:-88176568 Msa0896970:CDS
AAGAAAGAAAACATTCTTGC+TGG 0.422446 6_1:+88178263 None:intergenic
GATGAAGAAAGTGAATGAAA+AGG 0.423156 6_1:-88176601 Msa0896970:CDS
AAATAAAAGATATGGCTAAT+GGG 0.426060 6_1:-88176722 Msa0896970:CDS
ATGAAGAAAGTGAATGAAAA+GGG 0.437429 6_1:-88176600 Msa0896970:CDS
CTTGGTCACCCTGCAGTTGG+AGG 0.438371 6_1:-88176540 Msa0896970:CDS
GGGTATGATTATAAACAAAT+GGG 0.446782 6_1:-88176580 Msa0896970:CDS
TTCTATCATGGGCTCATGAT+GGG 0.449514 6_1:-88176458 Msa0896970:CDS
AGAAGCCTAGCTAGTGTAGA+TGG 0.449912 6_1:+88178776 None:intergenic
ATGGGAAGCCTATTCTATCA+TGG 0.449967 6_1:-88176470 Msa0896970:CDS
AGTGCAAATGAGTGGGGTGG+GGG 0.450758 6_1:-88176412 Msa0896970:CDS
TTCCTTCCAAGTTCAGGTCT+AGG 0.451980 6_1:-88178683 Msa0896970:CDS
GGCTTGATGAACACCCTAAA+GGG 0.455917 6_1:-88176794 Msa0896970:CDS
GTAAGCAAAATGTGGTGAAA+GGG 0.456990 6_1:-88176365 Msa0896970:CDS
TCAGTGGTTTATGTTTGCTT+GGG 0.464880 6_1:-88176771 Msa0896970:CDS
GCACTAGCTGCACTTAATGA+TGG 0.474158 6_1:-88178014 Msa0896970:CDS
AAAGGACCAATAGCATAAAC+AGG 0.476618 6_1:+88177969 None:intergenic
TCATGAGCCCATGATAGAAT+AGG 0.480353 6_1:+88176462 None:intergenic
GGGGTGGGGTAAGCAAAATG+TGG 0.480620 6_1:-88176373 Msa0896970:CDS
TGATGAGTAATGAGTCTTTG+AGG 0.482439 6_1:-88176314 Msa0896970:CDS
ATCCTTGGTCACCCTGCAGT+TGG 0.484950 6_1:-88176543 Msa0896970:CDS
GAGTTGAGATGAAGGGAAAG+AGG 0.488618 6_1:+88178538 None:intergenic
GTAGTGCAAATGAGTGGGGT+GGG 0.490371 6_1:-88176414 Msa0896970:CDS
CTAAACTTAGAAAGCTTCAT+GGG 0.495099 6_1:-88178073 Msa0896970:CDS
ATTTGAGTGAGTTGAGATGA+AGG 0.495756 6_1:+88178530 None:intergenic
AATTCAGCTGTTCTTAGACA+TGG 0.502424 6_1:+88178650 None:intergenic
ATTCTATCATGGGCTCATGA+TGG 0.502557 6_1:-88176459 Msa0896970:CDS
AGAAAGGCTGCTAGTGTTGG+TGG 0.503115 6_1:-88176261 Msa0896970:CDS
TAGTGTTGGTGGGAGTATTG+AGG 0.509195 6_1:-88176250 Msa0896970:CDS
TGTGATTAAGAAACAAATTG+AGG 0.509528 6_1:-88176226 Msa0896970:CDS
TTGGTCACCCTGCAGTTGGA+GGG 0.511717 6_1:-88176539 Msa0896970:CDS
TTTACAAACCCTCCAACTGC+AGG 0.521239 6_1:+88176531 None:intergenic
AATGATGGAGGTAGCTAGAA+AGG 0.523676 6_1:-88176277 Msa0896970:CDS
TGGCTTGATGAACACCCTAA+AGG 0.526834 6_1:-88176795 Msa0896970:CDS
TAGTGCAAATGAGTGGGGTG+GGG 0.528842 6_1:-88176413 Msa0896970:CDS
GAGGGTTTGTAAATCATGGT+GGG 0.531433 6_1:-88176521 Msa0896970:CDS
CCGGAGGAGATCCAAACCTT+AGG 0.534117 6_1:-88178837 Msa0896970:five_prime_UTR
CAACTGTCTGGTGCAATCAC+CGG 0.534432 6_1:-88178856 Msa0896970:five_prime_UTR
GAGTCTTTGAGGATCAAAGC+TGG 0.534951 6_1:-88176303 Msa0896970:CDS
CAGAAGTAGTGCAAATGAGT+GGG 0.536166 6_1:-88176419 Msa0896970:CDS
CCTAAGGTTTGGATCTCCTC+CGG 0.536711 6_1:+88178837 None:intergenic
GAAAGGGGAGGAGGTTTCAA+AGG 0.538092 6_1:-88176349 Msa0896970:CDS
GTAAATCAAATGGAGATCCT+TGG 0.538549 6_1:-88176558 Msa0896970:CDS
AAATGTGGTGAAAGGGGAGG+AGG 0.540045 6_1:-88176358 Msa0896970:CDS
GAAAGCTACATGAGCAACAA+AGG 0.542529 6_1:+88178703 None:intergenic
GGTAAGCAAAATGTGGTGAA+AGG 0.544218 6_1:-88176366 Msa0896970:CDS
GCTATGAAATAGATGTAGCT+AGG 0.546892 6_1:+88178287 None:intergenic
GTTGGAGGGTTTGTAAATCA+TGG 0.547417 6_1:-88176525 Msa0896970:CDS
AGATGACCTAGACCTGAACT+TGG 0.549316 6_1:+88178677 None:intergenic
GCGATGAAGCGATTGACGAA+TGG 0.549522 6_1:+88178433 None:intergenic
CACTAGCTGCACTTAATGAT+GGG 0.550552 6_1:-88178013 Msa0896970:CDS
TAGTAGAAGCTGTTTGGCAT+GGG 0.551912 6_1:-88176488 Msa0896970:CDS
TAAGCAAAATGTGGTGAAAG+GGG 0.552227 6_1:-88176364 Msa0896970:CDS
TTGGTATTGGTGCAATTCCA+GGG 0.556801 6_1:+88178165 None:intergenic
GATTCAGCTAAAGAGACTGT+TGG 0.560544 6_1:+88178584 None:intergenic
TCAAATTCACATGGCACCAA+AGG 0.561584 6_1:+88177951 None:intergenic
TGGGAAGCCTATTCTATCAT+GGG 0.562073 6_1:-88176469 Msa0896970:CDS
ATAGTAGAAGCTGTTTGGCA+TGG 0.562550 6_1:-88176489 Msa0896970:CDS
ATGTGGTTACAAATTCTTGT+GGG 0.562579 6_1:-88176691 Msa0896970:CDS
GGTGATGCTGTTGAAATCCC+TGG 0.566508 6_1:-88178182 Msa0896970:CDS
GATCAAAGCTGGGAAAATGA+TGG 0.566938 6_1:-88176292 Msa0896970:CDS
GCGCGGATTCTGTATTGAAG+TGG 0.568190 6_1:-88176815 Msa0896970:CDS
TTAAGAAACAAATTGAGGAA+TGG 0.574166 6_1:-88176221 Msa0896970:CDS
ATGATGGGAAAGTTGTTCCT+GGG 0.576685 6_1:-88177998 Msa0896970:CDS
AAAGCTACATGAGCAACAAA+GGG 0.577163 6_1:+88178704 None:intergenic
TTTGAGTGAGTTGAGATGAA+GGG 0.579431 6_1:+88178531 None:intergenic
CTCCAACTGCAGGGTGACCA+AGG 0.583617 6_1:+88176541 None:intergenic
CTATTAGGTTGAAGAATCAA+AGG 0.583967 6_1:+88178128 None:intergenic
GCTAGAAAGGCTGCTAGTGT+TGG 0.590299 6_1:-88176264 Msa0896970:CDS
ATTCACCATCTACACTAGCT+AGG 0.590804 6_1:-88178781 Msa0896970:five_prime_UTR
TCAGAAGTAGTGCAAATGAG+TGG 0.592538 6_1:-88176420 Msa0896970:CDS
GAAAGGCTGCTAGTGTTGGT+GGG 0.593358 6_1:-88176260 Msa0896970:CDS
AGTAGTGCAAATGAGTGGGG+TGG 0.593716 6_1:-88176415 Msa0896970:CDS
AAACAAGACATGTACAAGGC+GGG 0.596907 6_1:-88176748 Msa0896970:CDS
ACGGTGTTAACGTTAATCGA+TGG 0.601476 6_1:+88178482 None:intergenic
TCTATCATGGGCTCATGATG+GGG 0.601560 6_1:-88176457 Msa0896970:CDS
GGAGGGTTTGTAAATCATGG+TGG 0.601899 6_1:-88176522 Msa0896970:CDS
GACCTAGACCTGAACTTGGA+AGG 0.603084 6_1:+88178681 None:intergenic
AGTCTTTGAGGATCAAAGCT+GGG 0.603386 6_1:-88176302 Msa0896970:CDS
CTGAAGCCAAAATGGATCAA+CGG 0.603763 6_1:+88178463 None:intergenic
CTTGTGGGTGGTGAAATTGA+AGG 0.607810 6_1:-88176676 Msa0896970:CDS
GCATAAACAGGAGGCAACCC+AGG 0.607847 6_1:+88177981 None:intergenic
GGTAGTTGACAAGGACGAGG+AGG 0.621579 6_1:-88176655 Msa0896970:CDS
GGTGCCATGTGAATTTGAGA+AGG 0.621742 6_1:-88177946 Msa0896970:intron
AGGAACAAAATTGAGTGATG+AGG 0.626983 6_1:+88178558 None:intergenic
CTTTGAAAAGATACTTATGG+AGG 0.628694 6_1:-88178102 Msa0896970:CDS
GCTAATGGGTTAATATCATG+TGG 0.633115 6_1:-88176708 Msa0896970:CDS
TTACAAACCCTCCAACTGCA+GGG 0.639629 6_1:+88176532 None:intergenic
TGAACACCCTAAAGGGTCAG+TGG 0.641180 6_1:-88176787 Msa0896970:CDS
GCAAAATGTGGTGAAAGGGG+AGG 0.643704 6_1:-88176361 Msa0896970:CDS
TGGTTACAAATTCTTGTGGG+TGG 0.648709 6_1:-88176688 Msa0896970:CDS
GCTAGTGTAGATGGTGAATG+TGG 0.648933 6_1:+88178785 None:intergenic
CATGTGGTTACAAATTCTTG+TGG 0.650147 6_1:-88176692 Msa0896970:CDS
GGTTTGTAAATCATGGTGGG+TGG 0.661430 6_1:-88176518 Msa0896970:CDS
TCATAGATGAAAGCTGAGAG+AGG 0.663499 6_1:+88178359 None:intergenic
GAAGGTAGTTGACAAGGACG+AGG 0.668182 6_1:-88176658 Msa0896970:CDS
TGGGAAACAAGACATGTACA+AGG 0.670845 6_1:-88176752 Msa0896970:CDS
GGACCAATAGCATAAACAGG+AGG 0.676553 6_1:+88177972 None:intergenic
CTGTCTGGTGCAATCACCGG+AGG 0.679753 6_1:-88178853 Msa0896970:five_prime_UTR
GAAATTGAAGGTAGTTGACA+AGG 0.683560 6_1:-88176664 Msa0896970:CDS
CAAAGCTGGGAAAATGATGG+AGG 0.685629 6_1:-88176289 Msa0896970:CDS
TTAGGTTGAAGAATCAAAGG+AGG 0.687566 6_1:+88178131 None:intergenic
AGAAGTAGTGCAAATGAGTG+GGG 0.689093 6_1:-88176418 Msa0896970:CDS
TGAACCTTCTCAAATTCACA+TGG 0.696635 6_1:+88177942 None:intergenic
ATGCTCAACCAATAATTGCG+CGG 0.696850 6_1:-88176832 Msa0896970:CDS
TAGATGAAAGCTGAGAGAGG+TGG 0.697333 6_1:+88178362 None:intergenic
GAAACAAGACATGTACAAGG+CGG 0.744799 6_1:-88176749 Msa0896970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAAAAAATAAATACTTATA+GGG + chr6_1:88177632-88177651 None:intergenic 10.0%
!! AAAAATATTTCATCAAATAA+TGG + chr6_1:88177855-88177874 None:intergenic 10.0%
!!! TTTGATGAAATATTTTTAAA+AGG - chr6_1:88177858-88177877 Msa0896970:intron 10.0%
!!! AAGATAAAACTTGAAAATTT+TGG - chr6_1:88177357-88177376 Msa0896970:intron 15.0%
!!! AATTTAAGATGATTTATGTT+TGG + chr6_1:88177418-88177437 None:intergenic 15.0%
!! GAGGAATTAAATATAAAAAT+TGG + chr6_1:88177585-88177604 None:intergenic 15.0%
!! CTCAAAAAATAAATACTTAT+AGG + chr6_1:88177633-88177652 None:intergenic 15.0%
!!! ATAAAAGTTGATATATTTAG+AGG - chr6_1:88177888-88177907 Msa0896970:intron 15.0%
!!! TAAAAGTTGATATATTTAGA+GGG - chr6_1:88177889-88177908 Msa0896970:intron 15.0%
!!! ATCATGTAAGTCATTTTTAA+AGG - chr6_1:88177528-88177547 Msa0896970:intron 20.0%
!!! TCATGTAAGTCATTTTTAAA+GGG - chr6_1:88177529-88177548 Msa0896970:intron 20.0%
!! TGAAGACAATAATACTTATA+GGG + chr6_1:88177660-88177679 None:intergenic 20.0%
!! TTGAAGACAATAATACTTAT+AGG + chr6_1:88177661-88177680 None:intergenic 20.0%
!! AGTATTATTGTCTTCAAAAT+TGG - chr6_1:88177664-88177683 Msa0896970:intron 20.0%
!!! ATTTTTGTCTTCATAAACTA+TGG + chr6_1:88177956-88177975 None:intergenic 20.0%
!! AAAGACAATGAAAATTTAGA+AGG - chr6_1:88178023-88178042 Msa0896970:CDS 20.0%
!! AAATAAAAGATATGGCTAAT+GGG - chr6_1:88178404-88178423 Msa0896970:CDS 20.0%
!!! AAATTTTAACTTGTGTCCTA+AGG + chr6_1:88176308-88176327 None:intergenic 25.0%
! TTGTTAGAATTGAAGGTAAA+AGG + chr6_1:88176718-88176737 None:intergenic 25.0%
!!! GAAAGTTTTGTTAGAATTGA+AGG + chr6_1:88176725-88176744 None:intergenic 25.0%
!! AAAAGAGAAATTTTCCATGA+TGG + chr6_1:88176819-88176838 None:intergenic 25.0%
!! ATCTTTTCAAAGAGACTATT+AGG + chr6_1:88177016-88177035 None:intergenic 25.0%
!! TCTCTTTGAAAAGATACTTA+TGG - chr6_1:88177021-88177040 Msa0896970:intron 25.0%
! TTTACTCTATTTCACTTATG+TGG - chr6_1:88177239-88177258 Msa0896970:intron 25.0%
! TAAGATGATTTATGTTTGGT+AGG + chr6_1:88177414-88177433 None:intergenic 25.0%
!! GCTTTTATTAATGGAGTTAT+CGG + chr6_1:88177696-88177715 None:intergenic 25.0%
! CAATTAAATTAGCAACATGT+AGG - chr6_1:88177759-88177778 Msa0896970:intron 25.0%
!!! AACTTTACCATCTTTAAAGT+TGG + chr6_1:88177825-88177844 None:intergenic 25.0%
!! TTAAAGATGGTAAAGTTTTG+AGG - chr6_1:88177828-88177847 Msa0896970:intron 25.0%
! TTTCTGTCTTTATAAACCAA+TGG + chr6_1:88178004-88178023 None:intergenic 25.0%
! TGCTTATATATTATTCCGAA+AGG + chr6_1:88178127-88178146 None:intergenic 25.0%
!! CTTTTGCTTATATTTCATTC+AGG - chr6_1:88178210-88178229 Msa0896970:CDS 25.0%
! TTTGTCTTTGTCTAATATGT+AGG - chr6_1:88178267-88178286 Msa0896970:CDS 25.0%
! CAAATAAAAGATATGGCTAA+TGG - chr6_1:88178403-88178422 Msa0896970:CDS 25.0%
! AAGAGTTAGAGAATGTATTA+GGG - chr6_1:88178494-88178513 Msa0896970:CDS 25.0%
! ATGAAGAAAGTGAATGAAAA+GGG - chr6_1:88178526-88178545 Msa0896970:CDS 25.0%
! AGGGTATGATTATAAACAAA+TGG - chr6_1:88178545-88178564 Msa0896970:CDS 25.0%
! GGGTATGATTATAAACAAAT+GGG - chr6_1:88178546-88178565 Msa0896970:CDS 25.0%
! AAACAAATGGGTAAATCAAA+TGG - chr6_1:88178558-88178577 Msa0896970:CDS 25.0%
! TGTGATTAAGAAACAAATTG+AGG - chr6_1:88178900-88178919 Msa0896970:five_prime_UTR 25.0%
! TTAAGAAACAAATTGAGGAA+TGG - chr6_1:88178905-88178924 Msa0896970:five_prime_UTR 25.0%
!! GAATGGAAAATGAATTTTCA+AGG - chr6_1:88178922-88178941 Msa0896970:five_prime_UTR 25.0%
ATTGTCAAAATTCAACTGTC+TGG - chr6_1:88176258-88176277 Msa0896970:CDS 30.0%
!!! ACATTGTTAGTTTTGCTATG+TGG + chr6_1:88176388-88176407 None:intergenic 30.0%
! GCTGAATTATTTCTTCGTTA+TGG - chr6_1:88176491-88176510 Msa0896970:CDS 30.0%
! CGTTAATCGATGGATTTAAA+GGG + chr6_1:88176637-88176656 None:intergenic 30.0%
! ACGTTAATCGATGGATTTAA+AGG + chr6_1:88176638-88176657 None:intergenic 30.0%
! TGTTAGTTTGATTTCACCTT+TGG - chr6_1:88176790-88176809 Msa0896970:CDS 30.0%
AAGAAAGAAAACATTCTTGC+TGG + chr6_1:88176866-88176885 None:intergenic 30.0%
! GCTAAACATTTTTCATGCAT+TGG - chr6_1:88176923-88176942 Msa0896970:intron 30.0%
!! GGTAATGAAGATTTTGGTAT+TGG + chr6_1:88176977-88176996 None:intergenic 30.0%
! AAAGGAGGTAATGAAGATTT+TGG + chr6_1:88176983-88177002 None:intergenic 30.0%
!! CTATTAGGTTGAAGAATCAA+AGG + chr6_1:88177001-88177020 None:intergenic 30.0%
! CTTTGAAAAGATACTTATGG+AGG - chr6_1:88177024-88177043 Msa0896970:intron 30.0%
CTAAACTTAGAAAGCTTCAT+GGG - chr6_1:88177053-88177072 Msa0896970:intron 30.0%
TTCATGTCTCACTAAAACTT+TGG - chr6_1:88177203-88177222 Msa0896970:intron 30.0%
! TACTTGATGGAAAGTTTTTG+AGG + chr6_1:88177604-88177623 None:intergenic 30.0%
! TTATAGGGATTGTTACTTGA+TGG + chr6_1:88177617-88177636 None:intergenic 30.0%
TTATTAATGGAGTTATCGGT+GGG + chr6_1:88177692-88177711 None:intergenic 30.0%
TTTATTAATGGAGTTATCGG+TGG + chr6_1:88177693-88177712 None:intergenic 30.0%
TTTATAAACCAATGGCAAGT+TGG + chr6_1:88177996-88178015 None:intergenic 30.0%
ATGCATACACTTTATGATGT+TGG + chr6_1:88178095-88178114 None:intergenic 30.0%
ATGCATACATATACTCCTTT+CGG - chr6_1:88178109-88178128 Msa0896970:CDS 30.0%
TTAGACAAAGACAAAAGCTT+AGG + chr6_1:88178262-88178281 None:intergenic 30.0%
ATGTGGTTACAAATTCTTGT+GGG - chr6_1:88178435-88178454 Msa0896970:CDS 30.0%
GAAGAGTTAGAGAATGTATT+AGG - chr6_1:88178493-88178512 Msa0896970:CDS 30.0%
GATGAAGAAAGTGAATGAAA+AGG - chr6_1:88178525-88178544 Msa0896970:CDS 30.0%
ATTCAATAGTAGAAGCTGTT+TGG - chr6_1:88178632-88178651 Msa0896970:CDS 30.0%
!! TTAACTTGTGTCCTAAGGTT+TGG + chr6_1:88176303-88176322 None:intergenic 35.0%
AAAGCTACATGAGCAACAAA+GGG + chr6_1:88176425-88176444 None:intergenic 35.0%
AATTCAGCTGTTCTTAGACA+TGG + chr6_1:88176479-88176498 None:intergenic 35.0%
AGGAACAAAATTGAGTGATG+AGG + chr6_1:88176571-88176590 None:intergenic 35.0%
! TTTGAGTGAGTTGAGATGAA+GGG + chr6_1:88176598-88176617 None:intergenic 35.0%
! ATTTGAGTGAGTTGAGATGA+AGG + chr6_1:88176599-88176618 None:intergenic 35.0%
! TTAACACCGTTGATCCATTT+TGG - chr6_1:88176657-88176676 Msa0896970:CDS 35.0%
!! TTTTCCATGATGGAAACCAA+AGG + chr6_1:88176809-88176828 None:intergenic 35.0%
GCTATGAAATAGATGTAGCT+AGG + chr6_1:88176842-88176861 None:intergenic 35.0%
!! TTAGGTTGAAGAATCAAAGG+AGG + chr6_1:88176998-88177017 None:intergenic 35.0%
CCATGAAGCTTTCTAAGTTT+AGG + chr6_1:88177055-88177074 None:intergenic 35.0%
CCTAAACTTAGAAAGCTTCA+TGG - chr6_1:88177052-88177071 Msa0896970:intron 35.0%
TATGAACTCGTTTGAAGAAC+TGG - chr6_1:88177081-88177100 Msa0896970:intron 35.0%
AAAGGACCAATAGCATAAAC+AGG + chr6_1:88177160-88177179 None:intergenic 35.0%
TGTTTATGCTATTGGTCCTT+TGG - chr6_1:88177159-88177178 Msa0896970:intron 35.0%
TGAACCTTCTCAAATTCACA+TGG + chr6_1:88177187-88177206 None:intergenic 35.0%
TATTAATGGAGTTATCGGTG+GGG + chr6_1:88177691-88177710 None:intergenic 35.0%
! GTCACGTCAGCTTTTATTAA+TGG + chr6_1:88177705-88177724 None:intergenic 35.0%
! TCAGAGTCCAACTTTAAAGA+TGG - chr6_1:88177815-88177834 Msa0896970:intron 35.0%
! ATGATGTTGGTCATGTGTTT+TGG + chr6_1:88178082-88178101 None:intergenic 35.0%
! TTTCATTCAGGAGAGAGTAT+TGG - chr6_1:88178222-88178241 Msa0896970:CDS 35.0%
TCAGTGGTTTATGTTTGCTT+GGG - chr6_1:88178355-88178374 Msa0896970:CDS 35.0%
GCGGGATCAAATAAAAGATA+TGG - chr6_1:88178396-88178415 Msa0896970:CDS 35.0%
!! GCTAATGGGTTAATATCATG+TGG - chr6_1:88178418-88178437 Msa0896970:CDS 35.0%
CATGTGGTTACAAATTCTTG+TGG - chr6_1:88178434-88178453 Msa0896970:CDS 35.0%
GAAATTGAAGGTAGTTGACA+AGG - chr6_1:88178462-88178481 Msa0896970:CDS 35.0%
GTAAATCAAATGGAGATCCT+TGG - chr6_1:88178568-88178587 Msa0896970:CDS 35.0%
GTAAGCAAAATGTGGTGAAA+GGG - chr6_1:88178761-88178780 Msa0896970:five_prime_UTR 35.0%
TAAGCAAAATGTGGTGAAAG+GGG - chr6_1:88178762-88178781 Msa0896970:five_prime_UTR 35.0%
TGATGAGTAATGAGTCTTTG+AGG - chr6_1:88178812-88178831 Msa0896970:five_prime_UTR 35.0%
ATTCACCATCTACACTAGCT+AGG - chr6_1:88176345-88176364 Msa0896970:CDS 40.0%
GAAAGCTACATGAGCAACAA+AGG + chr6_1:88176426-88176445 None:intergenic 40.0%
!!! GCTAAAGAGACTGTTGGTTT+TGG + chr6_1:88176539-88176558 None:intergenic 40.0%
GATTCAGCTAAAGAGACTGT+TGG + chr6_1:88176545-88176564 None:intergenic 40.0%
! ACGGTGTTAACGTTAATCGA+TGG + chr6_1:88176647-88176666 None:intergenic 40.0%
CTGAAGCCAAAATGGATCAA+CGG + chr6_1:88176666-88176685 None:intergenic 40.0%
GTTTCGAACTGAAGCCAAAA+TGG + chr6_1:88176674-88176693 None:intergenic 40.0%
TCATAGATGAAAGCTGAGAG+AGG + chr6_1:88176770-88176789 None:intergenic 40.0%
! TTCACCTTTGGTTTCCATCA+TGG - chr6_1:88176802-88176821 Msa0896970:CDS 40.0%
!! TTGGTATTGGTGCAATTCCA+GGG + chr6_1:88176964-88176983 None:intergenic 40.0%
!! TTTGGTATTGGTGCAATTCC+AGG + chr6_1:88176965-88176984 None:intergenic 40.0%
CACTAGCTGCACTTAATGAT+GGG - chr6_1:88177113-88177132 Msa0896970:intron 40.0%
! AATGATGGGAAAGTTGTTCC+TGG - chr6_1:88177127-88177146 Msa0896970:intron 40.0%
! ATGATGGGAAAGTTGTTCCT+GGG - chr6_1:88177128-88177147 Msa0896970:intron 40.0%
TTGCCTCCTGTTTATGCTAT+TGG - chr6_1:88177151-88177170 Msa0896970:intron 40.0%
TCAAATTCACATGGCACCAA+AGG + chr6_1:88177178-88177197 None:intergenic 40.0%
CTCATTAACAGAAGCTGACA+TGG + chr6_1:88177787-88177806 None:intergenic 40.0%
AGACATAACCAACTTGCCAT+TGG - chr6_1:88177985-88178004 Msa0896970:CDS 40.0%
!!! TGTTTTGGTGCTCAACACAT+TGG + chr6_1:88178067-88178086 None:intergenic 40.0%
ATGCTCAACCAATAATTGCG+CGG - chr6_1:88178294-88178313 Msa0896970:CDS 40.0%
TACAGAATCCGCGCAATTAT+TGG + chr6_1:88178305-88178324 None:intergenic 40.0%
CATAAACCACTGACCCTTTA+GGG + chr6_1:88178348-88178367 None:intergenic 40.0%
ACATAAACCACTGACCCTTT+AGG + chr6_1:88178349-88178368 None:intergenic 40.0%
GTCAGTGGTTTATGTTTGCT+TGG - chr6_1:88178354-88178373 Msa0896970:CDS 40.0%
TGGGAAACAAGACATGTACA+AGG - chr6_1:88178374-88178393 Msa0896970:CDS 40.0%
GAAACAAGACATGTACAAGG+CGG - chr6_1:88178377-88178396 Msa0896970:CDS 40.0%
AAACAAGACATGTACAAGGC+GGG - chr6_1:88178378-88178397 Msa0896970:CDS 40.0%
TGGTTACAAATTCTTGTGGG+TGG - chr6_1:88178438-88178457 Msa0896970:CDS 40.0%
GTTGGAGGGTTTGTAAATCA+TGG - chr6_1:88178601-88178620 Msa0896970:CDS 40.0%
GAGGGTTTGTAAATCATGGT+GGG - chr6_1:88178605-88178624 Msa0896970:CDS 40.0%
ATAGTAGAAGCTGTTTGGCA+TGG - chr6_1:88178637-88178656 Msa0896970:CDS 40.0%
TAGTAGAAGCTGTTTGGCAT+GGG - chr6_1:88178638-88178657 Msa0896970:CDS 40.0%
ATGGGAAGCCTATTCTATCA+TGG - chr6_1:88178656-88178675 Msa0896970:CDS 40.0%
TGGGAAGCCTATTCTATCAT+GGG - chr6_1:88178657-88178676 Msa0896970:CDS 40.0%
TCATGAGCCCATGATAGAAT+AGG + chr6_1:88178667-88178686 None:intergenic 40.0%
ATTCTATCATGGGCTCATGA+TGG - chr6_1:88178667-88178686 Msa0896970:CDS 40.0%
TTCTATCATGGGCTCATGAT+GGG - chr6_1:88178668-88178687 Msa0896970:CDS 40.0%
TCAGAAGTAGTGCAAATGAG+TGG - chr6_1:88178706-88178725 Msa0896970:CDS 40.0%
CAGAAGTAGTGCAAATGAGT+GGG - chr6_1:88178707-88178726 Msa0896970:CDS 40.0%
AGAAGTAGTGCAAATGAGTG+GGG - chr6_1:88178708-88178727 Msa0896970:CDS 40.0%
GGTAAGCAAAATGTGGTGAA+AGG - chr6_1:88178760-88178779 Msa0896970:five_prime_UTR 40.0%
! AGTCTTTGAGGATCAAAGCT+GGG - chr6_1:88178824-88178843 Msa0896970:five_prime_UTR 40.0%
GATCAAAGCTGGGAAAATGA+TGG - chr6_1:88178834-88178853 Msa0896970:five_prime_UTR 40.0%
! AATGATGGAGGTAGCTAGAA+AGG - chr6_1:88178849-88178868 Msa0896970:five_prime_UTR 40.0%
GCTAGTGTAGATGGTGAATG+TGG + chr6_1:88176344-88176363 None:intergenic 45.0%
AGAAGCCTAGCTAGTGTAGA+TGG + chr6_1:88176353-88176372 None:intergenic 45.0%
GTAGCTTTCCTTCCAAGTTC+AGG - chr6_1:88176437-88176456 Msa0896970:CDS 45.0%
TTCCTTCCAAGTTCAGGTCT+AGG - chr6_1:88176443-88176462 Msa0896970:CDS 45.0%
AGATGACCTAGACCTGAACT+TGG + chr6_1:88176452-88176471 None:intergenic 45.0%
GAGTTGAGATGAAGGGAAAG+AGG + chr6_1:88176591-88176610 None:intergenic 45.0%
TAGATGAAAGCTGAGAGAGG+TGG + chr6_1:88176767-88176786 None:intergenic 45.0%
GCACTAGCTGCACTTAATGA+TGG - chr6_1:88177112-88177131 Msa0896970:intron 45.0%
GGACCAATAGCATAAACAGG+AGG + chr6_1:88177157-88177176 None:intergenic 45.0%
! GGTGCCATGTGAATTTGAGA+AGG - chr6_1:88177180-88177199 Msa0896970:intron 45.0%
TGGCTTGATGAACACCCTAA+AGG - chr6_1:88178331-88178350 Msa0896970:CDS 45.0%
GGCTTGATGAACACCCTAAA+GGG - chr6_1:88178332-88178351 Msa0896970:CDS 45.0%
CTTGTGGGTGGTGAAATTGA+AGG - chr6_1:88178450-88178469 Msa0896970:CDS 45.0%
TTACAAACCCTCCAACTGCA+GGG + chr6_1:88178597-88178616 None:intergenic 45.0%
TTTACAAACCCTCCAACTGC+AGG + chr6_1:88178598-88178617 None:intergenic 45.0%
GGAGGGTTTGTAAATCATGG+TGG - chr6_1:88178604-88178623 Msa0896970:CDS 45.0%
! GGTTTGTAAATCATGGTGGG+TGG - chr6_1:88178608-88178627 Msa0896970:CDS 45.0%
TCTATCATGGGCTCATGATG+GGG - chr6_1:88178669-88178688 Msa0896970:CDS 45.0%
! GAGTCTTTGAGGATCAAAGC+TGG - chr6_1:88178823-88178842 Msa0896970:five_prime_UTR 45.0%
CAAAGCTGGGAAAATGATGG+AGG - chr6_1:88178837-88178856 Msa0896970:five_prime_UTR 45.0%
!! TAGTGTTGGTGGGAGTATTG+AGG - chr6_1:88178876-88178895 Msa0896970:five_prime_UTR 45.0%
CAACTGTCTGGTGCAATCAC+CGG - chr6_1:88176270-88176289 Msa0896970:CDS 50.0%
CCTAAGGTTTGGATCTCCTC+CGG + chr6_1:88176292-88176311 None:intergenic 50.0%
GACCTAGACCTGAACTTGGA+AGG + chr6_1:88176448-88176467 None:intergenic 50.0%
GCGATGAAGCGATTGACGAA+TGG + chr6_1:88176696-88176715 None:intergenic 50.0%
GGTGATGCTGTTGAAATCCC+TGG - chr6_1:88176944-88176963 Msa0896970:intron 50.0%
GCGCGGATTCTGTATTGAAG+TGG - chr6_1:88178311-88178330 Msa0896970:CDS 50.0%
TGAACACCCTAAAGGGTCAG+TGG - chr6_1:88178339-88178358 Msa0896970:CDS 50.0%
GAAGGTAGTTGACAAGGACG+AGG - chr6_1:88178468-88178487 Msa0896970:CDS 50.0%
AGTAGTGCAAATGAGTGGGG+TGG - chr6_1:88178711-88178730 Msa0896970:CDS 50.0%
GTAGTGCAAATGAGTGGGGT+GGG - chr6_1:88178712-88178731 Msa0896970:CDS 50.0%
TAGTGCAAATGAGTGGGGTG+GGG - chr6_1:88178713-88178732 Msa0896970:CDS 50.0%
GCAAAATGTGGTGAAAGGGG+AGG - chr6_1:88178765-88178784 Msa0896970:five_prime_UTR 50.0%
AAATGTGGTGAAAGGGGAGG+AGG - chr6_1:88178768-88178787 Msa0896970:five_prime_UTR 50.0%
GAAAGGGGAGGAGGTTTCAA+AGG - chr6_1:88178777-88178796 Msa0896970:five_prime_UTR 50.0%
GCTAGAAAGGCTGCTAGTGT+TGG - chr6_1:88178862-88178881 Msa0896970:five_prime_UTR 50.0%
! AGAAAGGCTGCTAGTGTTGG+TGG - chr6_1:88178865-88178884 Msa0896970:five_prime_UTR 50.0%
!! GAAAGGCTGCTAGTGTTGGT+GGG - chr6_1:88178866-88178885 Msa0896970:five_prime_UTR 50.0%
CCGGAGGAGATCCAAACCTT+AGG - chr6_1:88176289-88176308 Msa0896970:CDS 55.0%
GCATAAACAGGAGGCAACCC+AGG + chr6_1:88177148-88177167 None:intergenic 55.0%
GGTAGTTGACAAGGACGAGG+AGG - chr6_1:88178471-88178490 Msa0896970:CDS 55.0%
ATCCTTGGTCACCCTGCAGT+TGG - chr6_1:88178583-88178602 Msa0896970:CDS 55.0%
TTGGTCACCCTGCAGTTGGA+GGG - chr6_1:88178587-88178606 Msa0896970:CDS 55.0%
AGTGCAAATGAGTGGGGTGG+GGG - chr6_1:88178714-88178733 Msa0896970:CDS 55.0%
AAATGAGTGGGGTGGGGGTT+TGG - chr6_1:88178719-88178738 Msa0896970:CDS 55.0%
GGGGTGGGGTAAGCAAAATG+TGG - chr6_1:88178753-88178772 Msa0896970:five_prime_UTR 55.0%
CTGTCTGGTGCAATCACCGG+AGG - chr6_1:88176273-88176292 Msa0896970:CDS 60.0%
CTCCAACTGCAGGGTGACCA+AGG + chr6_1:88178588-88178607 None:intergenic 60.0%
CTTGGTCACCCTGCAGTTGG+AGG - chr6_1:88178586-88178605 Msa0896970:CDS 60.0%
TGGGGTGGGGGTTTGGCCAG+AGG - chr6_1:88178726-88178745 Msa0896970:exon 70.0%
GGGGTGGGGGTTTGGCCAGA+GGG - chr6_1:88178727-88178746 Msa0896970:exon 70.0%
GGGTGGGGGTTTGGCCAGAG+GGG - chr6_1:88178728-88178747 Msa0896970:exon 70.0%
TGGGGGTTTGGCCAGAGGGG+TGG - chr6_1:88178731-88178750 Msa0896970:exon 70.0%
GGGGGTTTGGCCAGAGGGGT+GGG - chr6_1:88178732-88178751 Msa0896970:exon 70.0%
GGGGTTTGGCCAGAGGGGTG+GGG - chr6_1:88178733-88178752 Msa0896970:exon 70.0%
GGGTTTGGCCAGAGGGGTGG+GGG - chr6_1:88178734-88178753 Msa0896970:exon 70.0%
TTTGGCCAGAGGGGTGGGGG+TGG - chr6_1:88178737-88178756 Msa0896970:exon 70.0%
TTGGCCAGAGGGGTGGGGGT+GGG - chr6_1:88178738-88178757 Msa0896970:exon 70.0%
TTACCCCACCCCCACCCCTC+TGG + chr6_1:88178745-88178764 None:intergenic 70.0%
TGGCCAGAGGGGTGGGGGTG+GGG - chr6_1:88178739-88178758 Msa0896970:exon 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 88176197 88178951 88176197 ID=Msa0896970;Name=Msa0896970
chr6_1 mRNA 88176197 88178951 88176197 ID=Msa0896970-mRNA-1;Parent=Msa0896970;Name=Msa0896970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=207|1|0.5|1|1|1|2|0|486
chr6_1 exon 88176197 88176859 88176197 ID=Msa0896970-mRNA-1:exon:14852;Parent=Msa0896970-mRNA-1
chr6_1 exon 88177947 88178951 88177947 ID=Msa0896970-mRNA-1:exon:14851;Parent=Msa0896970-mRNA-1
chr6_1 five_prime_UTR 88178745 88178951 88178745 ID=Msa0896970-mRNA-1:five_prime_utr;Parent=Msa0896970-mRNA-1
chr6_1 CDS 88177947 88178744 88177947 ID=Msa0896970-mRNA-1:cds;Parent=Msa0896970-mRNA-1
chr6_1 CDS 88176197 88176859 88176197 ID=Msa0896970-mRNA-1:cds;Parent=Msa0896970-mRNA-1
Gene Sequence

>Msa0896970

ATGTCTTCTTCAGATGATCCCTTTGTTGCTCATGTAGCTTTCCTTCCAAGTTCAGGTCTAGGTCATCTCAATCCATGTCTAAGAACAGCTGAATTATTTCTTCGTTATGGTTGCAAACTCACTCTCATAACACCAAAACCAACAGTCTCTTTAGCTGAATCAGACCTCATCACTCAATTTTGTTCCTCTTTCCCTTCATCTCAACTCACTCAAATAGACTTAAATCTCATCCCTTTAAATCCATCGATTAACGTTAACACCGTTGATCCATTTTGGCTTCAGTTCGAAACCATTCGTCAATCGCTTCATCGCCTTTTACCTTCAATTCTAACAAAACTTTCATCTTCATCATCATCATCACCACCTCTCTCAGCTTTCATCTATGATGTTAGTTTGATTTCACCTTTGGTTTCCATCATGGAAAATTTCTCTTTTCCTAGCTACATCTATTTCATAGCACCAGCAAGAATGTTTTCTTTCTTTGCATATCTATCTGTTCTTTCTGAGAAAAGCAATGATGCTAAACATTTTTCATGCATTGGTGATGCTGTTGAAATCCCTGGAATTGCACCAATACCAAAATCTTCATTACCTCCTTTGATTCTTCAACCTAATAGTCTCTTTGAAAAGATACTTATGGAGGATAGTCCTAAACTTAGAAAGCTTCATGGGATTTTTATGAACTCGTTTGAAGAACTGGAAGCTGAAGCACTAGCTGCACTTAATGATGGGAAAGTTGTTCCTGGGTTGCCTCCTGTTTATGCTATTGGTCCTTTGGTGCCATGTGAATTTGAGAAGGTACGATGCTCAACCAATAATTGCGCGGATTCTGTATTGAAGTGGCTTGATGAACACCCTAAAGGGTCAGTGGTTTATGTTTGCTTGGGAAACAAGACATGTACAAGGCGGGATCAAATAAAAGATATGGCTAATGGGTTAATATCATGTGGTTACAAATTCTTGTGGGTGGTGAAATTGAAGGTAGTTGACAAGGACGAGGAGGAAGAGTTAGAGAATGTATTAGGGAATGAGATGATGAAGAAAGTGAATGAAAAGGGTATGATTATAAACAAATGGGTAAATCAAATGGAGATCCTTGGTCACCCTGCAGTTGGAGGGTTTGTAAATCATGGTGGGTGGAATTCAATAGTAGAAGCTGTTTGGCATGGGAAGCCTATTCTATCATGGGCTCATGATGGGGATCAAAAGATAGCTTCAGAAGTAGTGCAAATGAGTGGGGTGGGGGTTTGGCCAGAGGGGTGGGGGTGGGGTAAGCAAAATGTGGTGAAAGGGGAGGAGGTTTCAAAGGTAATTAAAGAGATGATGAGTAATGAGTCTTTGAGGATCAAAGCTGGGAAAATGATGGAGGTAGCTAGAAAGGCTGCTAGTGTTGGTGGGAGTATTGAGGTTGTGATTAAGAAACAAATTGAGGAATGGAAAATGAATTTTCAAGGCATATAA

Protein sequence

>Msa0896970

MSSSDDPFVAHVAFLPSSGLGHLNPCLRTAELFLRYGCKLTLITPKPTVSLAESDLITQFCSSFPSSQLTQIDLNLIPLNPSINVNTVDPFWLQFETIRQSLHRLLPSILTKLSSSSSSSPPLSAFIYDVSLISPLVSIMENFSFPSYIYFIAPARMFSFFAYLSVLSEKSNDAKHFSCIGDAVEIPGIAPIPKSSLPPLILQPNSLFEKILMEDSPKLRKLHGIFMNSFEELEAEALAALNDGKVVPGLPPVYAIGPLVPCEFEKVRCSTNNCADSVLKWLDEHPKGSVVYVCLGNKTCTRRDQIKDMANGLISCGYKFLWVVKLKVVDKDEEEELENVLGNEMMKKVNEKGMIINKWVNQMEILGHPAVGGFVNHGGWNSIVEAVWHGKPILSWAHDGDQKIASEVVQMSGVGVWPEGWGWGKQNVVKGEEVSKVIKEMMSNESLRIKAGKMMEVARKAASVGGSIEVVIKKQIEEWKMNFQGI*