AlfalfaGEDB | Msa0961690

M. sativa cultivar zhongmu-4 / Msa0961690

KEGG: -
GO: -
PFAM: PF07765.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961690	XP_003620326.2	97.859	327	7	0	4	330	1	327	0.0	659

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961690	sp\|Q9SX73\|KIP1L_ARATH	33.077	260	144	3	7	266	13	242	2.84e-36	135

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa0961690	0.856326	3.471143e-62	-8.615850e-47
Msa0005890	Msa0961690	0.807585	4.705128e-50	-8.615850e-47
Msa0007480	Msa0961690	0.834959	2.216047e-56	-8.615850e-47
Msa0008670	Msa0961690	0.807143	5.838001e-50	-8.615850e-47
Msa0009760	Msa0961690	0.803940	2.743096e-49	-8.615850e-47
Msa0012540	Msa0961690	0.813522	2.452934e-51	-8.615850e-47
Msa0016670	Msa0961690	0.806858	6.706819e-50	-8.615850e-47
Msa0017510	Msa0961690	0.851829	6.876063e-61	-8.615850e-47
Msa0026130	Msa0961690	0.812136	4.933538e-51	-8.615850e-47
Msa0026430	Msa0961690	0.800965	1.125409e-48	-8.615850e-47

Showing 1 to 10 of 427 entries

Previous1 2 3 4 5…43Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961690	MtrunA17_Chr6g0481301	97.531	324	8	0	7	330	47	370	0.0	650

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0961690	AT1G48405.1	33.077	260	144	3	7	266	13	242	2.89e-37	135
Msa0961690	AT3G17680.1	42.213	244	126	6	1	237	7	242	1.98e-33	125
Msa0961690	AT3G17680.3	42.213	244	126	6	1	237	39	274	4.23e-33	125
Msa0961690	AT3G17680.2	41.702	235	123	5	9	237	60	286	2.65e-32	124

Showing 1 to 4 of 4 entries

Previous1Next

Find 72 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAAGAATGGCGGTGA+TGG	0.467728	6_3:+83906537	Msa0961690:CDS
AAAGTAGTTGAGGTCTCTTT+TGG	0.388432	6_3:-83905855	None:intergenic
AACATGGACTTGTTGCTTTG+TGG	0.484037	6_3:+83906684	Msa0961690:CDS
AACTACAATTAGTTATCAAA+AGG	0.457726	6_3:-83906983	None:intergenic
AAGAAGAAGGAAATTCATCT+AGG	0.520316	6_3:+83906613	Msa0961690:CDS
AAGGGAAGAATGGCGGTGAT+GGG	0.552271	6_3:+83906538	Msa0961690:CDS
AAGTGTTTGTATATATCGAT+CGG	0.552375	6_3:-83905917	None:intergenic
AATTGCAGCAAAAGCATGGT+TGG	0.523733	6_3:-83906895	None:intergenic
AATTGCATCAACATCAACCA+TGG	0.628092	6_3:-83906097	None:intergenic
ACAAATGAAGAAGAAGAAGA+AGG	0.483902	6_3:+83905799	Msa0961690:CDS

Showing 1 to 10 of 72 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AATCTTGGTTGAAATCAGAT+TGG	-	chr6_3:83904780-83904799	None:intergenic	30.0%
TTATGGCAAAGGTTAAAGAA+AGG	-	chr6_3:83904870-83904889	None:intergenic	30.0%
GTACTTCAAATATGTTGATG+TGG	-	chr6_3:83904960-83904979	None:intergenic	30.0%
TGGGAAATGTGTAATTCTAA+CGG	-	chr6_3:83905022-83905041	None:intergenic	30.0%
ACAAGACATGAGGATAAAAT+GGG	-	chr6_3:83905041-83905060	None:intergenic	30.0%
GTTGTAGAATAGTATAGGTT+AGG	-	chr6_3:83905221-83905240	None:intergenic	30.0%
CCAAACAAAGACACAATAAA+AGG	-	chr6_3:83905366-83905385	None:intergenic	30.0%
ATATAGACCAGATCTCAATA+GGG	-	chr6_3:83905426-83905445	None:intergenic	30.0%
AATATAGACCAGATCTCAAT+AGG	-	chr6_3:83905427-83905446	None:intergenic	30.0%
TGAACATGGTTTATTTATGG+TGG	+	chr6_3:83905738-83905757	Msa0961690:intron	30.0%

Showing 1 to 10 of 270 entries

Previous1 2 3 4 5…27Next

Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	83904690	83907073	83904690	ID=Msa0961690;Name=Msa0961690
chr6_3	mRNA	83904690	83907073	83904690	ID=Msa0961690-mRNA-1;Parent=Msa0961690;Name=Msa0961690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|0.5\|0.33\|0.66\|0\|0.33\|3\|345\|330
chr6_3	exon	83904690	83904696	83904690	ID=Msa0961690-mRNA-1:exon:15050;Parent=Msa0961690-mRNA-1
chr6_3	exon	83905516	83905536	83905516	ID=Msa0961690-mRNA-1:exon:15051;Parent=Msa0961690-mRNA-1
chr6_3	exon	83905764	83907073	83905764	ID=Msa0961690-mRNA-1:exon:15052;Parent=Msa0961690-mRNA-1
chr6_3	CDS	83904690	83904696	83904690	ID=Msa0961690-mRNA-1:cds;Parent=Msa0961690-mRNA-1
chr6_3	CDS	83905516	83905536	83905516	ID=Msa0961690-mRNA-1:cds;Parent=Msa0961690-mRNA-1
chr6_3	CDS	83905764	83906728	83905764	ID=Msa0961690-mRNA-1:cds;Parent=Msa0961690-mRNA-1
chr6_3	three_prime_UTR	83906729	83907073	83906729	ID=Msa0961690-mRNA-1:three_prime_utr;Parent=Msa0961690-mRNA-1

Gene Sequence

>Msa0961690

ATGGAATCTATGAACTTGAGTAAATCAGATTTGGAAGAAAGGATGAAAATGTTGGCAATTGGAACAAATGAAGAAGAAGAAGAAGGGGACACTTTTGCTGAAAGAGCAGAAACTTACTACCAAAAGAGACCTCAACTACTTTCTCTTCTGCATGATTTGTACAATGGCTATGTCACTTTATCCGATCGATATATACAAACACTTGCAAAGCATAAGCATCATAGTAGACACTCTTCACAAGTTTCAACTTTGGAAGAAGGTTTTTCTGATCAAGAAGAAGTTATTAGTGGTGTGAGTCAAGTTGATTCGGATATGGAAAGTTCAATCTCTTATCAACAAATGTTGCCATTGATGAAGGGTTCCATGGTTGATGTTGATGCAATTGTAGCTGAGCTTGTGATGAAGAATGTTATGTGTGATTTTTTGGTTCATGAGGTTGGTGTCATGGAGAGAAAGTATTGTGAGTCTTCGAGGAAAAGTGAGTTACAGAAGAGTTTGCTTGAGGTGTTGGAATCTGAGAGACTTGTTTTGTTGAATGAGAATGCTGGTTTGAGTTATAGGGTTAATAGTTTGGTTGAAGAGAACAAAGACCTTGCGTCCGAGTCGGTTTTCATAAAGAGAAAAGCCGGTGAGTTAGCTAAGTGTGTGCTGAAGATGAGGGAGGATCATAGAGTTTTTCTATTGCATAGGAAGATTGAAGATCTTCAAGGCCAGATACATGGTTTGGAGAAGAGGAACAAGGAGTATTATGAGAGGCTTTTGAGAAGAGAGAGTCAAGAAAATGGTGGCTGTATCGGCAACAAAGGGAAGAATGGCGGTGATGGGATAGCTTTGGAACTTCATGTTCAAATGGAGAAGCCTAGAAGGTTTAAGTGGAAAGAAGAAGGAAATTCATCTAGGAAGAATTTTGCTGGGAAGAAAGGTCATAGTTTGTGGAAAAAGTTGAAGAACATGGACTTGTTGCTTTGTGGGACTAATCCAACTTGCGCTTGA

Protein sequence

>Msa0961690

MESMNLSKSDLEERMKMLAIGTNEEEEEGDTFAERAETYYQKRPQLLSLLHDLYNGYVTLSDRYIQTLAKHKHHSRHSSQVSTLEEGFSDQEEVISGVSQVDSDMESSISYQQMLPLMKGSMVDVDAIVAELVMKNVMCDFLVHEVGVMERKYCESSRKSELQKSLLEVLESERLVLLNENAGLSYRVNSLVEENKDLASESVFIKRKAGELAKCVLKMREDHRVFLLHRKIEDLQGQIHGLEKRNKEYYERLLRRESQENGGCIGNKGKNGGDGIALELHVQMEKPRRFKWKEEGNSSRKNFAGKKGHSLWKKLKNMDLLLCGTNPTCA*