AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0961690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961690 MtrunA17_Chr6g0481301 97.531 324 8 0 7 330 47 370 0.0 650
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0961690 AT1G48405.1 33.077 260 144 3 7 266 13 242 2.89e-37 135
Msa0961690 AT3G17680.1 42.213 244 126 6 1 237 7 242 1.98e-33 125
Msa0961690 AT3G17680.3 42.213 244 126 6 1 237 39 274 4.23e-33 125
Msa0961690 AT3G17680.2 41.702 235 123 5 9 237 60 286 2.65e-32 124

Find 72 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAATGCTGGTTTGAGTTAT+AGG 0.223670 6_3:+83906274 Msa0961690:CDS
TCTTTCCACTTAAACCTTCT+AGG 0.230863 6_3:-83906594 None:intergenic
ACTACTAGTAGTAGATTTCT+AGG 0.237970 6_3:+83906825 Msa0961690:three_prime_UTR
AGAAGAGAGAGTCAAGAAAA+TGG 0.314682 6_3:+83906498 Msa0961690:CDS
GAATGCTGGTTTGAGTTATA+GGG 0.325881 6_3:+83906275 Msa0961690:CDS
GAGTTATAGGGTTAATAGTT+TGG 0.346234 6_3:+83906287 Msa0961690:CDS
TCTTCTCCAAACCATGTATC+TGG 0.388286 6_3:-83906446 None:intergenic
AAAGTAGTTGAGGTCTCTTT+TGG 0.388432 6_3:-83905855 None:intergenic
GCTATGAACTTGAGTAAATC+AGG 0.391332 6_3:+83905515 Msa0961690:intron
CAAGTTTCAACTTTGGAAGA+AGG 0.410477 6_3:+83905973 Msa0961690:CDS
TCAAGGCCAGATACATGGTT+TGG 0.410594 6_3:+83906440 Msa0961690:CDS
TTCAAATGGAGAAGCCTAGA+AGG 0.411732 6_3:+83906580 Msa0961690:CDS
ACAAATGTTGCCATTGATGA+AGG 0.414356 6_3:+83906071 Msa0961690:CDS
GAAGAGTTTGCTTGAGGTGT+TGG 0.416910 6_3:+83906224 Msa0961690:CDS
TAGGTTACTACGCATGTGTT+TGG 0.418131 6_3:+83906844 Msa0961690:three_prime_UTR
ACATGGACTTGTTGCTTTGT+GGG 0.423064 6_3:+83906685 Msa0961690:CDS
AGGATGAAAATGTTGGCAAT+TGG 0.428892 6_3:+83905775 Msa0961690:CDS
CTCTTCACAAGTTTCAACTT+TGG 0.429231 6_3:+83905966 Msa0961690:CDS
TGGTGGTAGATTTGGAAGAA+AGG 0.431166 6_3:+83905755 Msa0961690:intron
CCTCTAGTATTATAGCTTGG+TGG 0.437832 6_3:+83907039 Msa0961690:three_prime_UTR
GATCAAGAAGAAGTTATTAG+TGG 0.443016 6_3:+83906003 Msa0961690:CDS
GAAAGTATTGTGAGTCTTCG+AGG 0.448170 6_3:+83906187 Msa0961690:CDS
AACTACAATTAGTTATCAAA+AGG 0.457726 6_3:-83906983 None:intergenic
TGGCGGTGATGGGATAGCTT+TGG 0.459051 6_3:+83906548 Msa0961690:CDS
GAGTCAAGTTGATTCGGATA+TGG 0.463764 6_3:+83906029 Msa0961690:CDS
TGGTGTGAGTCAAGTTGATT+CGG 0.464121 6_3:+83906023 Msa0961690:CDS
CAAGAAAATGGTGGCTGTAT+CGG 0.465729 6_3:+83906510 Msa0961690:CDS
AAAGGGAAGAATGGCGGTGA+TGG 0.467728 6_3:+83906537 Msa0961690:CDS
GGAAGAAAGGATGAAAATGT+TGG 0.467904 6_3:+83905768 Msa0961690:CDS
TTGCCTCTAGTATTATAGCT+TGG 0.471251 6_3:+83907036 Msa0961690:three_prime_UTR
TTTGGAACTTCATGTTCAAA+TGG 0.471270 6_3:+83906566 Msa0961690:CDS
ACAAATGAAGAAGAAGAAGA+AGG 0.483902 6_3:+83905799 Msa0961690:CDS
AACATGGACTTGTTGCTTTG+TGG 0.484037 6_3:+83906684 Msa0961690:CDS
GGAAGAAAGGTCATAGTTTG+TGG 0.489302 6_3:+83906649 Msa0961690:CDS
CTTCTGCATGATTTGTACAA+TGG 0.492890 6_3:+83905880 Msa0961690:CDS
AGGTTTAAGTGGAAAGAAGA+AGG 0.501263 6_3:+83906600 Msa0961690:CDS
GATCTTCAAGGCCAGATACA+TGG 0.502154 6_3:+83906435 Msa0961690:CDS
GGTTCATGAGGTTGGTGTCA+TGG 0.507161 6_3:+83906161 Msa0961690:CDS
GCCATTGATGAAGGGTTCCA+TGG 0.510454 6_3:+83906080 Msa0961690:CDS
TGCGCTTGATCTTGATCAGA+CGG 0.511806 6_3:+83906720 Msa0961690:exon
AAGAAGAAGGAAATTCATCT+AGG 0.520316 6_3:+83906613 Msa0961690:CDS
AATTGCAGCAAAAGCATGGT+TGG 0.523733 6_3:-83906895 None:intergenic
ACCATGGAACCCTTCATCAA+TGG 0.524354 6_3:-83906081 None:intergenic
AGATACATGGTTTGGAGAAG+AGG 0.525980 6_3:+83906448 Msa0961690:CDS
TAGAAATTGCAGCAAAAGCA+TGG 0.538633 6_3:-83906899 None:intergenic
GGTGGCTGTATCGGCAACAA+AGG 0.540236 6_3:+83906519 Msa0961690:CDS
AGAAGCCTAGAAGGTTTAAG+TGG 0.552094 6_3:+83906589 Msa0961690:CDS
AAGGGAAGAATGGCGGTGAT+GGG 0.552271 6_3:+83906538 Msa0961690:CDS
AAGTGTTTGTATATATCGAT+CGG 0.552375 6_3:-83905917 None:intergenic
GATCAAGATCAAGCGCAAGT+TGG 0.564528 6_3:-83906714 None:intergenic
TGCAGAAGAGAAAGTAGTTG+AGG 0.566991 6_3:-83905865 None:intergenic
ATCGGCAACAAAGGGAAGAA+TGG 0.569240 6_3:+83906528 Msa0961690:CDS
CAAATGTTGCCATTGATGAA+GGG 0.570533 6_3:+83906072 Msa0961690:CDS
TGAAAACCGACTCGGACGCA+AGG 0.576680 6_3:-83906326 None:intergenic
CAAAGACCTTGCGTCCGAGT+CGG 0.582835 6_3:+83906320 Msa0961690:CDS
AGGAAGATTGAAGATCTTCA+AGG 0.589114 6_3:+83906423 Msa0961690:CDS
CTAAGTGTGTGCTGAAGATG+AGG 0.598254 6_3:+83906373 Msa0961690:CDS
GTGGCTGTATCGGCAACAAA+GGG 0.601739 6_3:+83906520 Msa0961690:CDS
GTTACAGAAGAGTTTGCTTG+AGG 0.610285 6_3:+83906218 Msa0961690:CDS
TTGATCAGACGGTTCAGATG+TGG 0.617813 6_3:+83906731 Msa0961690:three_prime_UTR
ACCACGTGATTGCACGTAGT+CGG 0.621957 6_3:-83906754 None:intergenic
CACACACTTAGCTAACTCAC+CGG 0.626155 6_3:-83906361 None:intergenic
AATTGCATCAACATCAACCA+TGG 0.628092 6_3:-83906097 None:intergenic
TCTCTTTATGAAAACCGACT+CGG 0.628900 6_3:-83906334 None:intergenic
GCCGACTACGTGCAATCACG+TGG 0.633747 6_3:+83906753 Msa0961690:three_prime_UTR
CCACCAAGCTATAATACTAG+AGG 0.651401 6_3:-83907039 None:intergenic
GGAACAAGGAGTATTATGAG+AGG 0.665037 6_3:+83906469 Msa0961690:CDS
AGAGAGAGTCAAGAAAATGG+TGG 0.683282 6_3:+83906501 Msa0961690:CDS
GGCAACAAAGGGAAGAATGG+CGG 0.694360 6_3:+83906531 Msa0961690:CDS
TGGTTTGGAGAAGAGGAACA+AGG 0.704148 6_3:+83906455 Msa0961690:CDS
GTGTGTGCTGAAGATGAGGG+AGG 0.735654 6_3:+83906377 Msa0961690:CDS
TAAGTGTGTGCTGAAGATGA+GGG 0.745974 6_3:+83906374 Msa0961690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTGAAAAACAAAAAT+TGG - chr6_3:83904902-83904921 None:intergenic 10.0%
!!! AAAAGTTGTATTTTTTATTA+TGG + chr6_3:83905574-83905593 Msa0961690:intron 10.0%
!!! AAATTTTGAAAAACAAAAAT+TGG - chr6_3:83904902-83904921 None:intergenic 10.0%
!!! AAAAGTTGTATTTTTTATTA+TGG + chr6_3:83905574-83905593 Msa0961690:intron 10.0%
!!! AAAGAACTTTATTATAGTTT+TGG + chr6_3:83904933-83904952 Msa0961690:intron 15.0%
!! TTTATGACAAATAATAATGT+AGG - chr6_3:83905283-83905302 None:intergenic 15.0%
!!! AATAGTTATGTTTTTTTTCA+TGG + chr6_3:83905667-83905686 Msa0961690:intron 15.0%
!!! AGATTTATATGTATACTTTT+TGG + chr6_3:83906793-83906812 Msa0961690:three_prime_UTR 15.0%
!!! AAAGAACTTTATTATAGTTT+TGG + chr6_3:83904933-83904952 Msa0961690:intron 15.0%
!! TTTATGACAAATAATAATGT+AGG - chr6_3:83905283-83905302 None:intergenic 15.0%
!!! AATAGTTATGTTTTTTTTCA+TGG + chr6_3:83905667-83905686 Msa0961690:intron 15.0%
!!! AGATTTATATGTATACTTTT+TGG + chr6_3:83906793-83906812 Msa0961690:three_prime_UTR 15.0%
!!! AATGTAAGAATCTTTTTCAT+AGG + chr6_3:83904694-83904713 Msa0961690:intron 20.0%
!!! TTTTCAAAATTTGAAACCAA+TGG + chr6_3:83904910-83904929 Msa0961690:intron 20.0%
!! TATAATAAAGTTCTTTCCAT+TGG - chr6_3:83904929-83904948 None:intergenic 20.0%
!! ACAAAAACCATAAATAATTC+TGG - chr6_3:83905335-83905354 None:intergenic 20.0%
!!! TTATTATGGTTTTGTACATA+TGG + chr6_3:83905588-83905607 Msa0961690:intron 20.0%
!! AGAAAAAAAAATCTCTTACA+TGG - chr6_3:83905625-83905644 None:intergenic 20.0%
!! ATATGAACATGGTTTATTTA+TGG + chr6_3:83905735-83905754 Msa0961690:intron 20.0%
!! AACTACAATTAGTTATCAAA+AGG - chr6_3:83906986-83907005 None:intergenic 20.0%
!!! AATGTAAGAATCTTTTTCAT+AGG + chr6_3:83904694-83904713 Msa0961690:intron 20.0%
!!! TTTTCAAAATTTGAAACCAA+TGG + chr6_3:83904910-83904929 Msa0961690:intron 20.0%
!! TATAATAAAGTTCTTTCCAT+TGG - chr6_3:83904929-83904948 None:intergenic 20.0%
!! ACAAAAACCATAAATAATTC+TGG - chr6_3:83905335-83905354 None:intergenic 20.0%
!!! TTATTATGGTTTTGTACATA+TGG + chr6_3:83905588-83905607 Msa0961690:intron 20.0%
!! AGAAAAAAAAATCTCTTACA+TGG - chr6_3:83905625-83905644 None:intergenic 20.0%
!! ATATGAACATGGTTTATTTA+TGG + chr6_3:83905735-83905754 Msa0961690:intron 20.0%
!! AACTACAATTAGTTATCAAA+AGG - chr6_3:83906986-83907005 None:intergenic 20.0%
! AAAATTGGCATGTAAAGTTA+TGG - chr6_3:83904887-83904906 None:intergenic 25.0%
! ACAATGTTGTAGAATAGTAT+AGG - chr6_3:83905226-83905245 None:intergenic 25.0%
! TGTACTACCAGAATTATTTA+TGG + chr6_3:83905325-83905344 Msa0961690:intron 25.0%
! CAAACAAAGACACAATAAAA+GGG - chr6_3:83905365-83905384 None:intergenic 25.0%
! TACTAACTCAAATATGAACA+TGG + chr6_3:83905724-83905743 Msa0961690:intron 25.0%
! TTTATTTATGGTGGTAGATT+TGG + chr6_3:83905747-83905766 Msa0961690:intron 25.0%
! AAGTGTTTGTATATATCGAT+CGG - chr6_3:83905920-83905939 None:intergenic 25.0%
!!! GAATGTTATGTGTGATTTTT+TGG + chr6_3:83906140-83906159 Msa0961690:CDS 25.0%
!! ATAGAGTTTTTCTATTGCAT+AGG + chr6_3:83906403-83906422 Msa0961690:CDS 25.0%
!! AAAATCAAGCTTTTAAGCTA+TGG + chr6_3:83906931-83906950 Msa0961690:three_prime_UTR 25.0%
! AAAATTGGCATGTAAAGTTA+TGG - chr6_3:83904887-83904906 None:intergenic 25.0%
! ACAATGTTGTAGAATAGTAT+AGG - chr6_3:83905226-83905245 None:intergenic 25.0%
! TGTACTACCAGAATTATTTA+TGG + chr6_3:83905325-83905344 Msa0961690:intron 25.0%
! CAAACAAAGACACAATAAAA+GGG - chr6_3:83905365-83905384 None:intergenic 25.0%
! TACTAACTCAAATATGAACA+TGG + chr6_3:83905724-83905743 Msa0961690:intron 25.0%
! TTTATTTATGGTGGTAGATT+TGG + chr6_3:83905747-83905766 Msa0961690:intron 25.0%
! AAGTGTTTGTATATATCGAT+CGG - chr6_3:83905920-83905939 None:intergenic 25.0%
!!! GAATGTTATGTGTGATTTTT+TGG + chr6_3:83906140-83906159 Msa0961690:CDS 25.0%
!! ATAGAGTTTTTCTATTGCAT+AGG + chr6_3:83906403-83906422 Msa0961690:CDS 25.0%
!! AAAATCAAGCTTTTAAGCTA+TGG + chr6_3:83906931-83906950 Msa0961690:three_prime_UTR 25.0%
AATCTTGGTTGAAATCAGAT+TGG - chr6_3:83904780-83904799 None:intergenic 30.0%
TTATGGCAAAGGTTAAAGAA+AGG - chr6_3:83904870-83904889 None:intergenic 30.0%
GTACTTCAAATATGTTGATG+TGG - chr6_3:83904960-83904979 None:intergenic 30.0%
TGGGAAATGTGTAATTCTAA+CGG - chr6_3:83905022-83905041 None:intergenic 30.0%
ACAAGACATGAGGATAAAAT+GGG - chr6_3:83905041-83905060 None:intergenic 30.0%
GTTGTAGAATAGTATAGGTT+AGG - chr6_3:83905221-83905240 None:intergenic 30.0%
CCAAACAAAGACACAATAAA+AGG - chr6_3:83905366-83905385 None:intergenic 30.0%
! CCTTTTATTGTGTCTTTGTT+TGG + chr6_3:83905363-83905382 Msa0961690:intron 30.0%
ATATAGACCAGATCTCAATA+GGG - chr6_3:83905426-83905445 None:intergenic 30.0%
AATATAGACCAGATCTCAAT+AGG - chr6_3:83905427-83905446 None:intergenic 30.0%
! GGTCTATATTAACCTTCTTT+TGG + chr6_3:83905437-83905456 Msa0961690:intron 30.0%
!!! AAGTTGTGCTTTTTTCTTCA+TGG + chr6_3:83905485-83905504 Msa0961690:intron 30.0%
!!! TTTTCATGGTTTTGAAGCAA+TGG + chr6_3:83905681-83905700 Msa0961690:intron 30.0%
TGAACATGGTTTATTTATGG+TGG + chr6_3:83905738-83905757 Msa0961690:intron 30.0%
ACAAATGAAGAAGAAGAAGA+AGG + chr6_3:83905799-83905818 Msa0961690:CDS 30.0%
CAAATGAAGAAGAAGAAGAA+GGG + chr6_3:83905800-83905819 Msa0961690:CDS 30.0%
AAATGAAGAAGAAGAAGAAG+GGG + chr6_3:83905801-83905820 Msa0961690:CDS 30.0%
GATCAAGAAGAAGTTATTAG+TGG + chr6_3:83906003-83906022 Msa0961690:CDS 30.0%
GAGTTATAGGGTTAATAGTT+TGG + chr6_3:83906287-83906306 Msa0961690:CDS 30.0%
! GTTTTCATAAAGAGAAAAGC+CGG + chr6_3:83906342-83906361 Msa0961690:CDS 30.0%
! TTTGGAACTTCATGTTCAAA+TGG + chr6_3:83906566-83906585 Msa0961690:CDS 30.0%
AAGAAGAAGGAAATTCATCT+AGG + chr6_3:83906613-83906632 Msa0961690:CDS 30.0%
ACTACTAGTAGTAGATTTCT+AGG + chr6_3:83906825-83906844 Msa0961690:three_prime_UTR 30.0%
AATCTTGGTTGAAATCAGAT+TGG - chr6_3:83904780-83904799 None:intergenic 30.0%
TTATGGCAAAGGTTAAAGAA+AGG - chr6_3:83904870-83904889 None:intergenic 30.0%
GTACTTCAAATATGTTGATG+TGG - chr6_3:83904960-83904979 None:intergenic 30.0%
TGGGAAATGTGTAATTCTAA+CGG - chr6_3:83905022-83905041 None:intergenic 30.0%
ACAAGACATGAGGATAAAAT+GGG - chr6_3:83905041-83905060 None:intergenic 30.0%
GTTGTAGAATAGTATAGGTT+AGG - chr6_3:83905221-83905240 None:intergenic 30.0%
CCAAACAAAGACACAATAAA+AGG - chr6_3:83905366-83905385 None:intergenic 30.0%
! CCTTTTATTGTGTCTTTGTT+TGG + chr6_3:83905363-83905382 Msa0961690:intron 30.0%
ATATAGACCAGATCTCAATA+GGG - chr6_3:83905426-83905445 None:intergenic 30.0%
AATATAGACCAGATCTCAAT+AGG - chr6_3:83905427-83905446 None:intergenic 30.0%
! GGTCTATATTAACCTTCTTT+TGG + chr6_3:83905437-83905456 Msa0961690:intron 30.0%
!!! AAGTTGTGCTTTTTTCTTCA+TGG + chr6_3:83905485-83905504 Msa0961690:intron 30.0%
!!! TTTTCATGGTTTTGAAGCAA+TGG + chr6_3:83905681-83905700 Msa0961690:intron 30.0%
TGAACATGGTTTATTTATGG+TGG + chr6_3:83905738-83905757 Msa0961690:intron 30.0%
ACAAATGAAGAAGAAGAAGA+AGG + chr6_3:83905799-83905818 Msa0961690:CDS 30.0%
CAAATGAAGAAGAAGAAGAA+GGG + chr6_3:83905800-83905819 Msa0961690:CDS 30.0%
AAATGAAGAAGAAGAAGAAG+GGG + chr6_3:83905801-83905820 Msa0961690:CDS 30.0%
GATCAAGAAGAAGTTATTAG+TGG + chr6_3:83906003-83906022 Msa0961690:CDS 30.0%
GAGTTATAGGGTTAATAGTT+TGG + chr6_3:83906287-83906306 Msa0961690:CDS 30.0%
! GTTTTCATAAAGAGAAAAGC+CGG + chr6_3:83906342-83906361 Msa0961690:CDS 30.0%
! TTTGGAACTTCATGTTCAAA+TGG + chr6_3:83906566-83906585 Msa0961690:CDS 30.0%
AAGAAGAAGGAAATTCATCT+AGG + chr6_3:83906613-83906632 Msa0961690:CDS 30.0%
ACTACTAGTAGTAGATTTCT+AGG + chr6_3:83906825-83906844 Msa0961690:three_prime_UTR 30.0%
AACAGATTGACACCATCATA+GGG - chr6_3:83904741-83904760 None:intergenic 35.0%
AAACAGATTGACACCATCAT+AGG - chr6_3:83904742-83904761 None:intergenic 35.0%
GTTGAAATCAGATTGGAGAT+TGG - chr6_3:83904773-83904792 None:intergenic 35.0%
! TGACAATGGATTTGGAATCT+TGG - chr6_3:83904795-83904814 None:intergenic 35.0%
! CAGAACAATGACAATGGATT+TGG - chr6_3:83904803-83904822 None:intergenic 35.0%
CAAATCCATTGTCATTGTTC+TGG + chr6_3:83904801-83904820 Msa0961690:intron 35.0%
CACAAGACATGAGGATAAAA+TGG - chr6_3:83905042-83905061 None:intergenic 35.0%
TATAAAGTGCACAAGACATG+AGG - chr6_3:83905051-83905070 None:intergenic 35.0%
GCTATGAACTTGAGTAAATC+AGG + chr6_3:83905515-83905534 Msa0961690:intron 35.0%
GGAAGAAAGGATGAAAATGT+TGG + chr6_3:83905768-83905787 Msa0961690:CDS 35.0%
AGGATGAAAATGTTGGCAAT+TGG + chr6_3:83905775-83905794 Msa0961690:CDS 35.0%
! AAAGTAGTTGAGGTCTCTTT+TGG - chr6_3:83905858-83905877 None:intergenic 35.0%
! CTTCTGCATGATTTGTACAA+TGG + chr6_3:83905880-83905899 Msa0961690:CDS 35.0%
CTCTTCACAAGTTTCAACTT+TGG + chr6_3:83905966-83905985 Msa0961690:CDS 35.0%
! CAAGTTTCAACTTTGGAAGA+AGG + chr6_3:83905973-83905992 Msa0961690:CDS 35.0%
ACAAATGTTGCCATTGATGA+AGG + chr6_3:83906071-83906090 Msa0961690:CDS 35.0%
CAAATGTTGCCATTGATGAA+GGG + chr6_3:83906072-83906091 Msa0961690:CDS 35.0%
AATTGCATCAACATCAACCA+TGG - chr6_3:83906100-83906119 None:intergenic 35.0%
!!! GTGTGATTTTTTGGTTCATG+AGG + chr6_3:83906149-83906168 Msa0961690:CDS 35.0%
!!! GATTTTTTGGTTCATGAGGT+TGG + chr6_3:83906153-83906172 Msa0961690:CDS 35.0%
!! GTTTTGTTGAATGAGAATGC+TGG + chr6_3:83906261-83906280 Msa0961690:CDS 35.0%
!! AGAATGCTGGTTTGAGTTAT+AGG + chr6_3:83906274-83906293 Msa0961690:CDS 35.0%
!! GAATGCTGGTTTGAGTTATA+GGG + chr6_3:83906275-83906294 Msa0961690:CDS 35.0%
TCTCTTTATGAAAACCGACT+CGG - chr6_3:83906337-83906356 None:intergenic 35.0%
AGGAAGATTGAAGATCTTCA+AGG + chr6_3:83906423-83906442 Msa0961690:CDS 35.0%
AGAAGAGAGAGTCAAGAAAA+TGG + chr6_3:83906498-83906517 Msa0961690:CDS 35.0%
TCTTTCCACTTAAACCTTCT+AGG - chr6_3:83906597-83906616 None:intergenic 35.0%
AGGTTTAAGTGGAAAGAAGA+AGG + chr6_3:83906600-83906619 Msa0961690:CDS 35.0%
! TCATCTAGGAAGAATTTTGC+TGG + chr6_3:83906627-83906646 Msa0961690:CDS 35.0%
! CATCTAGGAAGAATTTTGCT+GGG + chr6_3:83906628-83906647 Msa0961690:CDS 35.0%
! AAGAATTTTGCTGGGAAGAA+AGG + chr6_3:83906636-83906655 Msa0961690:CDS 35.0%
GTGGAAAAAGTTGAAGAACA+TGG + chr6_3:83906668-83906687 Msa0961690:CDS 35.0%
TAGAAATTGCAGCAAAAGCA+TGG - chr6_3:83906902-83906921 None:intergenic 35.0%
TTGCCTCTAGTATTATAGCT+TGG + chr6_3:83907036-83907055 Msa0961690:three_prime_UTR 35.0%
AACAGATTGACACCATCATA+GGG - chr6_3:83904741-83904760 None:intergenic 35.0%
AAACAGATTGACACCATCAT+AGG - chr6_3:83904742-83904761 None:intergenic 35.0%
GTTGAAATCAGATTGGAGAT+TGG - chr6_3:83904773-83904792 None:intergenic 35.0%
! TGACAATGGATTTGGAATCT+TGG - chr6_3:83904795-83904814 None:intergenic 35.0%
! CAGAACAATGACAATGGATT+TGG - chr6_3:83904803-83904822 None:intergenic 35.0%
CAAATCCATTGTCATTGTTC+TGG + chr6_3:83904801-83904820 Msa0961690:intron 35.0%
CACAAGACATGAGGATAAAA+TGG - chr6_3:83905042-83905061 None:intergenic 35.0%
TATAAAGTGCACAAGACATG+AGG - chr6_3:83905051-83905070 None:intergenic 35.0%
GCTATGAACTTGAGTAAATC+AGG + chr6_3:83905515-83905534 Msa0961690:intron 35.0%
GGAAGAAAGGATGAAAATGT+TGG + chr6_3:83905768-83905787 Msa0961690:CDS 35.0%
AGGATGAAAATGTTGGCAAT+TGG + chr6_3:83905775-83905794 Msa0961690:CDS 35.0%
! AAAGTAGTTGAGGTCTCTTT+TGG - chr6_3:83905858-83905877 None:intergenic 35.0%
! CTTCTGCATGATTTGTACAA+TGG + chr6_3:83905880-83905899 Msa0961690:CDS 35.0%
CTCTTCACAAGTTTCAACTT+TGG + chr6_3:83905966-83905985 Msa0961690:CDS 35.0%
! CAAGTTTCAACTTTGGAAGA+AGG + chr6_3:83905973-83905992 Msa0961690:CDS 35.0%
ACAAATGTTGCCATTGATGA+AGG + chr6_3:83906071-83906090 Msa0961690:CDS 35.0%
CAAATGTTGCCATTGATGAA+GGG + chr6_3:83906072-83906091 Msa0961690:CDS 35.0%
AATTGCATCAACATCAACCA+TGG - chr6_3:83906100-83906119 None:intergenic 35.0%
!!! GTGTGATTTTTTGGTTCATG+AGG + chr6_3:83906149-83906168 Msa0961690:CDS 35.0%
!!! GATTTTTTGGTTCATGAGGT+TGG + chr6_3:83906153-83906172 Msa0961690:CDS 35.0%
!! GTTTTGTTGAATGAGAATGC+TGG + chr6_3:83906261-83906280 Msa0961690:CDS 35.0%
!! AGAATGCTGGTTTGAGTTAT+AGG + chr6_3:83906274-83906293 Msa0961690:CDS 35.0%
!! GAATGCTGGTTTGAGTTATA+GGG + chr6_3:83906275-83906294 Msa0961690:CDS 35.0%
TCTCTTTATGAAAACCGACT+CGG - chr6_3:83906337-83906356 None:intergenic 35.0%
AGGAAGATTGAAGATCTTCA+AGG + chr6_3:83906423-83906442 Msa0961690:CDS 35.0%
AGAAGAGAGAGTCAAGAAAA+TGG + chr6_3:83906498-83906517 Msa0961690:CDS 35.0%
TCTTTCCACTTAAACCTTCT+AGG - chr6_3:83906597-83906616 None:intergenic 35.0%
AGGTTTAAGTGGAAAGAAGA+AGG + chr6_3:83906600-83906619 Msa0961690:CDS 35.0%
! TCATCTAGGAAGAATTTTGC+TGG + chr6_3:83906627-83906646 Msa0961690:CDS 35.0%
! CATCTAGGAAGAATTTTGCT+GGG + chr6_3:83906628-83906647 Msa0961690:CDS 35.0%
! AAGAATTTTGCTGGGAAGAA+AGG + chr6_3:83906636-83906655 Msa0961690:CDS 35.0%
GTGGAAAAAGTTGAAGAACA+TGG + chr6_3:83906668-83906687 Msa0961690:CDS 35.0%
TAGAAATTGCAGCAAAAGCA+TGG - chr6_3:83906902-83906921 None:intergenic 35.0%
TTGCCTCTAGTATTATAGCT+TGG + chr6_3:83907036-83907055 Msa0961690:three_prime_UTR 35.0%
TTTCATAGGCTGCTATTGAC+AGG + chr6_3:83904708-83904727 Msa0961690:intron 40.0%
ACAGATTGACACCATCATAG+GGG - chr6_3:83904740-83904759 None:intergenic 40.0%
ATGAGCCAGAACAATGACAA+TGG - chr6_3:83904809-83904828 None:intergenic 40.0%
GGCATGTAAAGTTATGGCAA+AGG - chr6_3:83904881-83904900 None:intergenic 40.0%
TCATCAACCCTATTGAGATC+TGG + chr6_3:83905416-83905435 Msa0961690:intron 40.0%
CCAATGAGAACACCAAAAGA+AGG - chr6_3:83905452-83905471 None:intergenic 40.0%
!!! CCTTCTTTTGGTGTTCTCAT+TGG + chr6_3:83905449-83905468 Msa0961690:intron 40.0%
TGGTGGTAGATTTGGAAGAA+AGG + chr6_3:83905755-83905774 Msa0961690:intron 40.0%
TGCAGAAGAGAAAGTAGTTG+AGG - chr6_3:83905868-83905887 None:intergenic 40.0%
!! TGGTGTGAGTCAAGTTGATT+CGG + chr6_3:83906023-83906042 Msa0961690:CDS 40.0%
!! GAGTCAAGTTGATTCGGATA+TGG + chr6_3:83906029-83906048 Msa0961690:CDS 40.0%
!! GAAAGTATTGTGAGTCTTCG+AGG + chr6_3:83906187-83906206 Msa0961690:CDS 40.0%
! GTTACAGAAGAGTTTGCTTG+AGG + chr6_3:83906218-83906237 Msa0961690:CDS 40.0%
TAAGTGTGTGCTGAAGATGA+GGG + chr6_3:83906374-83906393 Msa0961690:CDS 40.0%
TCTTCTCCAAACCATGTATC+TGG - chr6_3:83906449-83906468 None:intergenic 40.0%
! AGATACATGGTTTGGAGAAG+AGG + chr6_3:83906448-83906467 Msa0961690:CDS 40.0%
!! GGAACAAGGAGTATTATGAG+AGG + chr6_3:83906469-83906488 Msa0961690:CDS 40.0%
AGAGAGAGTCAAGAAAATGG+TGG + chr6_3:83906501-83906520 Msa0961690:CDS 40.0%
CAAGAAAATGGTGGCTGTAT+CGG + chr6_3:83906510-83906529 Msa0961690:CDS 40.0%
TTCAAATGGAGAAGCCTAGA+AGG + chr6_3:83906580-83906599 Msa0961690:CDS 40.0%
AGAAGCCTAGAAGGTTTAAG+TGG + chr6_3:83906589-83906608 Msa0961690:CDS 40.0%
GGAAGAAAGGTCATAGTTTG+TGG + chr6_3:83906649-83906668 Msa0961690:CDS 40.0%
!! AACATGGACTTGTTGCTTTG+TGG + chr6_3:83906684-83906703 Msa0961690:CDS 40.0%
!! ACATGGACTTGTTGCTTTGT+GGG + chr6_3:83906685-83906704 Msa0961690:CDS 40.0%
TAGGTTACTACGCATGTGTT+TGG + chr6_3:83906844-83906863 Msa0961690:three_prime_UTR 40.0%
! AATTGCAGCAAAAGCATGGT+TGG - chr6_3:83906898-83906917 None:intergenic 40.0%
CCACCAAGCTATAATACTAG+AGG - chr6_3:83907042-83907061 None:intergenic 40.0%
CCTCTAGTATTATAGCTTGG+TGG + chr6_3:83907039-83907058 Msa0961690:three_prime_UTR 40.0%
TTTCATAGGCTGCTATTGAC+AGG + chr6_3:83904708-83904727 Msa0961690:intron 40.0%
ACAGATTGACACCATCATAG+GGG - chr6_3:83904740-83904759 None:intergenic 40.0%
ATGAGCCAGAACAATGACAA+TGG - chr6_3:83904809-83904828 None:intergenic 40.0%
GGCATGTAAAGTTATGGCAA+AGG - chr6_3:83904881-83904900 None:intergenic 40.0%
TCATCAACCCTATTGAGATC+TGG + chr6_3:83905416-83905435 Msa0961690:intron 40.0%
CCAATGAGAACACCAAAAGA+AGG - chr6_3:83905452-83905471 None:intergenic 40.0%
!!! CCTTCTTTTGGTGTTCTCAT+TGG + chr6_3:83905449-83905468 Msa0961690:intron 40.0%
TGGTGGTAGATTTGGAAGAA+AGG + chr6_3:83905755-83905774 Msa0961690:intron 40.0%
TGCAGAAGAGAAAGTAGTTG+AGG - chr6_3:83905868-83905887 None:intergenic 40.0%
!! TGGTGTGAGTCAAGTTGATT+CGG + chr6_3:83906023-83906042 Msa0961690:CDS 40.0%
!! GAGTCAAGTTGATTCGGATA+TGG + chr6_3:83906029-83906048 Msa0961690:CDS 40.0%
!! GAAAGTATTGTGAGTCTTCG+AGG + chr6_3:83906187-83906206 Msa0961690:CDS 40.0%
! GTTACAGAAGAGTTTGCTTG+AGG + chr6_3:83906218-83906237 Msa0961690:CDS 40.0%
TAAGTGTGTGCTGAAGATGA+GGG + chr6_3:83906374-83906393 Msa0961690:CDS 40.0%
TCTTCTCCAAACCATGTATC+TGG - chr6_3:83906449-83906468 None:intergenic 40.0%
! AGATACATGGTTTGGAGAAG+AGG + chr6_3:83906448-83906467 Msa0961690:CDS 40.0%
!! GGAACAAGGAGTATTATGAG+AGG + chr6_3:83906469-83906488 Msa0961690:CDS 40.0%
AGAGAGAGTCAAGAAAATGG+TGG + chr6_3:83906501-83906520 Msa0961690:CDS 40.0%
CAAGAAAATGGTGGCTGTAT+CGG + chr6_3:83906510-83906529 Msa0961690:CDS 40.0%
TTCAAATGGAGAAGCCTAGA+AGG + chr6_3:83906580-83906599 Msa0961690:CDS 40.0%
AGAAGCCTAGAAGGTTTAAG+TGG + chr6_3:83906589-83906608 Msa0961690:CDS 40.0%
GGAAGAAAGGTCATAGTTTG+TGG + chr6_3:83906649-83906668 Msa0961690:CDS 40.0%
!! AACATGGACTTGTTGCTTTG+TGG + chr6_3:83906684-83906703 Msa0961690:CDS 40.0%
!! ACATGGACTTGTTGCTTTGT+GGG + chr6_3:83906685-83906704 Msa0961690:CDS 40.0%
TAGGTTACTACGCATGTGTT+TGG + chr6_3:83906844-83906863 Msa0961690:three_prime_UTR 40.0%
! AATTGCAGCAAAAGCATGGT+TGG - chr6_3:83906898-83906917 None:intergenic 40.0%
CCACCAAGCTATAATACTAG+AGG - chr6_3:83907042-83907061 None:intergenic 40.0%
CCTCTAGTATTATAGCTTGG+TGG + chr6_3:83907039-83907058 Msa0961690:three_prime_UTR 40.0%
ACAGGTATCTACCCCTATGA+TGG + chr6_3:83904726-83904745 Msa0961690:intron 45.0%
ACCATGGAACCCTTCATCAA+TGG - chr6_3:83906084-83906103 None:intergenic 45.0%
! GAAGAGTTTGCTTGAGGTGT+TGG + chr6_3:83906224-83906243 Msa0961690:CDS 45.0%
CACACACTTAGCTAACTCAC+CGG - chr6_3:83906364-83906383 None:intergenic 45.0%
CTAAGTGTGTGCTGAAGATG+AGG + chr6_3:83906373-83906392 Msa0961690:CDS 45.0%
GATCTTCAAGGCCAGATACA+TGG + chr6_3:83906435-83906454 Msa0961690:CDS 45.0%
TCAAGGCCAGATACATGGTT+TGG + chr6_3:83906440-83906459 Msa0961690:CDS 45.0%
! TGGTTTGGAGAAGAGGAACA+AGG + chr6_3:83906455-83906474 Msa0961690:CDS 45.0%
ATCGGCAACAAAGGGAAGAA+TGG + chr6_3:83906528-83906547 Msa0961690:CDS 45.0%
GATCAAGATCAAGCGCAAGT+TGG - chr6_3:83906717-83906736 None:intergenic 45.0%
TGCGCTTGATCTTGATCAGA+CGG + chr6_3:83906720-83906739 Msa0961690:exon 45.0%
TTGATCAGACGGTTCAGATG+TGG + chr6_3:83906731-83906750 Msa0961690:three_prime_UTR 45.0%
ACAGGTATCTACCCCTATGA+TGG + chr6_3:83904726-83904745 Msa0961690:intron 45.0%
ACCATGGAACCCTTCATCAA+TGG - chr6_3:83906084-83906103 None:intergenic 45.0%
! GAAGAGTTTGCTTGAGGTGT+TGG + chr6_3:83906224-83906243 Msa0961690:CDS 45.0%
CACACACTTAGCTAACTCAC+CGG - chr6_3:83906364-83906383 None:intergenic 45.0%
CTAAGTGTGTGCTGAAGATG+AGG + chr6_3:83906373-83906392 Msa0961690:CDS 45.0%
GATCTTCAAGGCCAGATACA+TGG + chr6_3:83906435-83906454 Msa0961690:CDS 45.0%
TCAAGGCCAGATACATGGTT+TGG + chr6_3:83906440-83906459 Msa0961690:CDS 45.0%
! TGGTTTGGAGAAGAGGAACA+AGG + chr6_3:83906455-83906474 Msa0961690:CDS 45.0%
ATCGGCAACAAAGGGAAGAA+TGG + chr6_3:83906528-83906547 Msa0961690:CDS 45.0%
GATCAAGATCAAGCGCAAGT+TGG - chr6_3:83906717-83906736 None:intergenic 45.0%
TGCGCTTGATCTTGATCAGA+CGG + chr6_3:83906720-83906739 Msa0961690:exon 45.0%
TTGATCAGACGGTTCAGATG+TGG + chr6_3:83906731-83906750 Msa0961690:three_prime_UTR 45.0%
GCACTTAGCACATGCATCTC+AGG + chr6_3:83905114-83905133 Msa0961690:intron 50.0%
GCCATTGATGAAGGGTTCCA+TGG + chr6_3:83906080-83906099 Msa0961690:CDS 50.0%
!! GGTTCATGAGGTTGGTGTCA+TGG + chr6_3:83906161-83906180 Msa0961690:CDS 50.0%
! GTGGCTGTATCGGCAACAAA+GGG + chr6_3:83906520-83906539 Msa0961690:CDS 50.0%
GGCAACAAAGGGAAGAATGG+CGG + chr6_3:83906531-83906550 Msa0961690:CDS 50.0%
AAAGGGAAGAATGGCGGTGA+TGG + chr6_3:83906537-83906556 Msa0961690:CDS 50.0%
AAGGGAAGAATGGCGGTGAT+GGG + chr6_3:83906538-83906557 Msa0961690:CDS 50.0%
ACCACGTGATTGCACGTAGT+CGG - chr6_3:83906757-83906776 None:intergenic 50.0%
GCACTTAGCACATGCATCTC+AGG + chr6_3:83905114-83905133 Msa0961690:intron 50.0%
GCCATTGATGAAGGGTTCCA+TGG + chr6_3:83906080-83906099 Msa0961690:CDS 50.0%
!! GGTTCATGAGGTTGGTGTCA+TGG + chr6_3:83906161-83906180 Msa0961690:CDS 50.0%
! GTGGCTGTATCGGCAACAAA+GGG + chr6_3:83906520-83906539 Msa0961690:CDS 50.0%
GGCAACAAAGGGAAGAATGG+CGG + chr6_3:83906531-83906550 Msa0961690:CDS 50.0%
AAAGGGAAGAATGGCGGTGA+TGG + chr6_3:83906537-83906556 Msa0961690:CDS 50.0%
AAGGGAAGAATGGCGGTGAT+GGG + chr6_3:83906538-83906557 Msa0961690:CDS 50.0%
ACCACGTGATTGCACGTAGT+CGG - chr6_3:83906757-83906776 None:intergenic 50.0%
CAAAGACCTTGCGTCCGAGT+CGG + chr6_3:83906320-83906339 Msa0961690:CDS 55.0%
!! TGAAAACCGACTCGGACGCA+AGG - chr6_3:83906329-83906348 None:intergenic 55.0%
GTGTGTGCTGAAGATGAGGG+AGG + chr6_3:83906377-83906396 Msa0961690:CDS 55.0%
! GGTGGCTGTATCGGCAACAA+AGG + chr6_3:83906519-83906538 Msa0961690:CDS 55.0%
!! TGGCGGTGATGGGATAGCTT+TGG + chr6_3:83906548-83906567 Msa0961690:CDS 55.0%
CAAAGACCTTGCGTCCGAGT+CGG + chr6_3:83906320-83906339 Msa0961690:CDS 55.0%
!! TGAAAACCGACTCGGACGCA+AGG - chr6_3:83906329-83906348 None:intergenic 55.0%
GTGTGTGCTGAAGATGAGGG+AGG + chr6_3:83906377-83906396 Msa0961690:CDS 55.0%
! GGTGGCTGTATCGGCAACAA+AGG + chr6_3:83906519-83906538 Msa0961690:CDS 55.0%
!! TGGCGGTGATGGGATAGCTT+TGG + chr6_3:83906548-83906567 Msa0961690:CDS 55.0%
GCCGACTACGTGCAATCACG+TGG + chr6_3:83906753-83906772 Msa0961690:three_prime_UTR 60.0%
GCCGACTACGTGCAATCACG+TGG + chr6_3:83906753-83906772 Msa0961690:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 83904690 83907073 83904690 ID=Msa0961690;Name=Msa0961690
chr6_3 mRNA 83904690 83907073 83904690 ID=Msa0961690-mRNA-1;Parent=Msa0961690;Name=Msa0961690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.5|0.33|0.66|0|0.33|3|345|330
chr6_3 exon 83904690 83904696 83904690 ID=Msa0961690-mRNA-1:exon:15050;Parent=Msa0961690-mRNA-1
chr6_3 exon 83905516 83905536 83905516 ID=Msa0961690-mRNA-1:exon:15051;Parent=Msa0961690-mRNA-1
chr6_3 exon 83905764 83907073 83905764 ID=Msa0961690-mRNA-1:exon:15052;Parent=Msa0961690-mRNA-1
chr6_3 CDS 83904690 83904696 83904690 ID=Msa0961690-mRNA-1:cds;Parent=Msa0961690-mRNA-1
chr6_3 CDS 83905516 83905536 83905516 ID=Msa0961690-mRNA-1:cds;Parent=Msa0961690-mRNA-1
chr6_3 CDS 83905764 83906728 83905764 ID=Msa0961690-mRNA-1:cds;Parent=Msa0961690-mRNA-1
chr6_3 three_prime_UTR 83906729 83907073 83906729 ID=Msa0961690-mRNA-1:three_prime_utr;Parent=Msa0961690-mRNA-1
Gene Sequence

>Msa0961690

ATGGAATCTATGAACTTGAGTAAATCAGATTTGGAAGAAAGGATGAAAATGTTGGCAATTGGAACAAATGAAGAAGAAGAAGAAGGGGACACTTTTGCTGAAAGAGCAGAAACTTACTACCAAAAGAGACCTCAACTACTTTCTCTTCTGCATGATTTGTACAATGGCTATGTCACTTTATCCGATCGATATATACAAACACTTGCAAAGCATAAGCATCATAGTAGACACTCTTCACAAGTTTCAACTTTGGAAGAAGGTTTTTCTGATCAAGAAGAAGTTATTAGTGGTGTGAGTCAAGTTGATTCGGATATGGAAAGTTCAATCTCTTATCAACAAATGTTGCCATTGATGAAGGGTTCCATGGTTGATGTTGATGCAATTGTAGCTGAGCTTGTGATGAAGAATGTTATGTGTGATTTTTTGGTTCATGAGGTTGGTGTCATGGAGAGAAAGTATTGTGAGTCTTCGAGGAAAAGTGAGTTACAGAAGAGTTTGCTTGAGGTGTTGGAATCTGAGAGACTTGTTTTGTTGAATGAGAATGCTGGTTTGAGTTATAGGGTTAATAGTTTGGTTGAAGAGAACAAAGACCTTGCGTCCGAGTCGGTTTTCATAAAGAGAAAAGCCGGTGAGTTAGCTAAGTGTGTGCTGAAGATGAGGGAGGATCATAGAGTTTTTCTATTGCATAGGAAGATTGAAGATCTTCAAGGCCAGATACATGGTTTGGAGAAGAGGAACAAGGAGTATTATGAGAGGCTTTTGAGAAGAGAGAGTCAAGAAAATGGTGGCTGTATCGGCAACAAAGGGAAGAATGGCGGTGATGGGATAGCTTTGGAACTTCATGTTCAAATGGAGAAGCCTAGAAGGTTTAAGTGGAAAGAAGAAGGAAATTCATCTAGGAAGAATTTTGCTGGGAAGAAAGGTCATAGTTTGTGGAAAAAGTTGAAGAACATGGACTTGTTGCTTTGTGGGACTAATCCAACTTGCGCTTGA

Protein sequence

>Msa0961690

MESMNLSKSDLEERMKMLAIGTNEEEEEGDTFAERAETYYQKRPQLLSLLHDLYNGYVTLSDRYIQTLAKHKHHSRHSSQVSTLEEGFSDQEEVISGVSQVDSDMESSISYQQMLPLMKGSMVDVDAIVAELVMKNVMCDFLVHEVGVMERKYCESSRKSELQKSLLEVLESERLVLLNENAGLSYRVNSLVEENKDLASESVFIKRKAGELAKCVLKMREDHRVFLLHRKIEDLQGQIHGLEKRNKEYYERLLRRESQENGGCIGNKGKNGGDGIALELHVQMEKPRRFKWKEEGNSSRKNFAGKKGHSLWKKLKNMDLLLCGTNPTCA*