Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1203490 | XP_003629592.1 | 97.822 | 597 | 13 | 0 | 1 | 597 | 1 | 597 | 0.0 | 1202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1203490 | G7LGE4 | 97.822 | 597 | 13 | 0 | 1 | 597 | 1 | 597 | 0.0 | 1202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1040120 | Msa1203490 | 0.809779 | 1.598495e-50 | -8.615850e-47 |
| Msa1128160 | Msa1203490 | 0.811237 | 7.739244e-51 | -8.615850e-47 |
| Msa1165360 | Msa1203490 | 0.811769 | 5.932251e-51 | -8.615850e-47 |
| Msa1203490 | Msa1255900 | 0.882626 | 8.897649e-71 | -8.615850e-47 |
| Msa1203490 | Msa1296120 | 0.949775 | 6.415292e-108 | -8.615850e-47 |
| Msa1203490 | Msa1328320 | 0.957824 | 1.062812e-115 | -8.615850e-47 |
| Msa1203490 | Msa1328350 | 0.950536 | 1.343912e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1203490 | MtrunA17_Chr8g0374741 | 97.822 | 597 | 13 | 0 | 1 | 597 | 1 | 597 | 0.0 | 1202 |
| Msa1203490 | MtrunA17_Chr5g0402501 | 67.164 | 603 | 135 | 9 | 1 | 597 | 1 | 546 | 0.0 | 734 |
| Msa1203490 | MtrunA17_Chr1g0153951 | 50.000 | 574 | 250 | 7 | 23 | 595 | 8 | 545 | 4.40e-161 | 471 |
| Msa1203490 | MtrunA17_Chr3g0133631 | 48.448 | 580 | 233 | 12 | 23 | 595 | 48 | 568 | 3.48e-159 | 468 |
| Msa1203490 | MtrunA17_Chr4g0028651 | 33.836 | 597 | 337 | 17 | 33 | 595 | 121 | 693 | 1.18e-81 | 270 |
| Msa1203490 | MtrunA17_Chr5g0435281 | 38.806 | 335 | 179 | 5 | 284 | 595 | 178 | 509 | 4.66e-72 | 240 |
| Msa1203490 | MtrunA17_Chr8g0373901 | 26.190 | 588 | 372 | 10 | 37 | 595 | 66 | 620 | 2.47e-45 | 170 |
| Msa1203490 | MtrunA17_Chr5g0403231 | 28.693 | 589 | 340 | 17 | 40 | 595 | 77 | 618 | 9.44e-45 | 168 |
| Msa1203490 | MtrunA17_Chr5g0399331 | 26.442 | 416 | 269 | 9 | 202 | 595 | 175 | 575 | 1.11e-42 | 161 |
| Msa1203490 | MtrunA17_Chr4g0034351 | 29.775 | 356 | 214 | 8 | 264 | 595 | 269 | 612 | 3.69e-36 | 143 |
| Msa1203490 | MtrunA17_Chr3g0115381 | 33.505 | 194 | 116 | 6 | 358 | 545 | 528 | 714 | 1.33e-19 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1203490 | AT4G37080.2 | 59.621 | 634 | 195 | 12 | 1 | 597 | 1 | 610 | 0.0 | 657 |
| Msa1203490 | AT4G37080.3 | 59.621 | 634 | 195 | 12 | 1 | 597 | 1 | 610 | 0.0 | 657 |
| Msa1203490 | AT4G37080.1 | 61.349 | 608 | 188 | 11 | 13 | 597 | 14 | 597 | 0.0 | 656 |
| Msa1203490 | AT4G37080.4 | 59.136 | 509 | 161 | 11 | 13 | 498 | 27 | 511 | 4.53e-171 | 496 |
| Msa1203490 | AT5G42690.5 | 49.404 | 587 | 213 | 13 | 16 | 595 | 2 | 511 | 4.20e-155 | 455 |
| Msa1203490 | AT5G42690.2 | 48.986 | 592 | 221 | 12 | 7 | 595 | 25 | 538 | 1.59e-154 | 455 |
| Msa1203490 | AT5G42690.4 | 48.986 | 592 | 221 | 12 | 7 | 595 | 25 | 538 | 1.59e-154 | 455 |
| Msa1203490 | AT5G42690.1 | 49.155 | 592 | 219 | 13 | 7 | 595 | 25 | 537 | 1.40e-153 | 452 |
| Msa1203490 | AT5G42690.3 | 49.551 | 557 | 201 | 11 | 42 | 595 | 7 | 486 | 1.82e-148 | 437 |
| Msa1203490 | AT2G39690.2 | 40.000 | 330 | 171 | 7 | 284 | 595 | 96 | 416 | 6.24e-74 | 243 |
| Msa1203490 | AT2G39690.4 | 40.000 | 330 | 171 | 7 | 284 | 595 | 177 | 497 | 4.22e-73 | 243 |
| Msa1203490 | AT2G39690.8 | 40.426 | 329 | 170 | 8 | 284 | 595 | 177 | 496 | 4.67e-73 | 243 |
| Msa1203490 | AT2G39690.5 | 40.000 | 330 | 171 | 7 | 284 | 595 | 203 | 523 | 4.74e-73 | 243 |
| Msa1203490 | AT2G39690.1 | 40.426 | 329 | 170 | 8 | 284 | 595 | 203 | 522 | 5.89e-73 | 243 |
| Msa1203490 | AT3G12540.2 | 38.109 | 349 | 197 | 6 | 264 | 595 | 157 | 503 | 3.71e-69 | 233 |
| Msa1203490 | AT3G12540.1 | 38.109 | 349 | 197 | 6 | 264 | 595 | 224 | 570 | 6.81e-69 | 234 |
| Msa1203490 | AT5G60720.1 | 29.916 | 595 | 313 | 19 | 78 | 595 | 122 | 689 | 4.61e-60 | 212 |
| Msa1203490 | AT1G16750.1 | 32.958 | 355 | 189 | 9 | 285 | 595 | 178 | 527 | 2.12e-47 | 174 |
| Msa1203490 | AT3G13000.1 | 32.486 | 354 | 192 | 9 | 284 | 595 | 197 | 545 | 1.38e-44 | 167 |
| Msa1203490 | AT3G13000.3 | 32.486 | 354 | 192 | 9 | 284 | 595 | 226 | 574 | 1.55e-44 | 167 |
| Msa1203490 | AT3G13000.2 | 32.486 | 354 | 192 | 9 | 284 | 595 | 226 | 574 | 1.55e-44 | 167 |
| Msa1203490 | AT2G39690.6 | 39.827 | 231 | 114 | 6 | 284 | 498 | 203 | 424 | 5.05e-43 | 160 |
| Msa1203490 | AT2G39690.7 | 40.435 | 230 | 113 | 7 | 284 | 498 | 203 | 423 | 5.98e-43 | 160 |
| Msa1203490 | AT5G47380.4 | 29.483 | 329 | 203 | 8 | 280 | 595 | 274 | 586 | 4.54e-41 | 157 |
| Msa1203490 | AT5G47380.5 | 29.483 | 329 | 203 | 8 | 280 | 595 | 218 | 530 | 5.37e-41 | 156 |
| Msa1203490 | AT5G47380.1 | 29.483 | 329 | 203 | 8 | 280 | 595 | 274 | 586 | 6.33e-41 | 157 |
| Msa1203490 | AT2G23700.1 | 29.670 | 364 | 212 | 10 | 259 | 595 | 355 | 701 | 2.47e-38 | 150 |
| Msa1203490 | AT5G66600.14 | 29.204 | 339 | 209 | 6 | 280 | 595 | 278 | 608 | 8.99e-36 | 142 |
| Msa1203490 | AT5G66600.1 | 29.204 | 339 | 209 | 6 | 280 | 595 | 278 | 608 | 8.99e-36 | 142 |
| Msa1203490 | AT5G66600.4 | 29.204 | 339 | 209 | 6 | 280 | 595 | 278 | 608 | 8.99e-36 | 142 |
| Msa1203490 | AT5G66600.9 | 29.204 | 339 | 209 | 6 | 280 | 595 | 278 | 608 | 8.99e-36 | 142 |
| Msa1203490 | AT5G66600.3 | 29.204 | 339 | 209 | 6 | 280 | 595 | 278 | 608 | 8.99e-36 | 142 |
| Msa1203490 | AT5G66600.2 | 29.204 | 339 | 209 | 6 | 280 | 595 | 258 | 588 | 9.52e-36 | 142 |
| Msa1203490 | AT3G18900.5 | 32.727 | 330 | 184 | 7 | 277 | 595 | 223 | 525 | 9.88e-36 | 141 |
| Msa1203490 | AT3G18900.4 | 32.727 | 330 | 184 | 7 | 277 | 595 | 228 | 530 | 1.07e-35 | 141 |
| Msa1203490 | AT5G66600.7 | 29.204 | 339 | 209 | 6 | 280 | 595 | 224 | 554 | 1.30e-35 | 141 |
| Msa1203490 | AT3G18900.6 | 32.727 | 330 | 184 | 7 | 277 | 595 | 147 | 449 | 1.45e-35 | 139 |
| Msa1203490 | AT3G18900.3 | 32.727 | 330 | 184 | 7 | 277 | 595 | 147 | 449 | 1.45e-35 | 139 |
| Msa1203490 | AT1G76620.1 | 27.353 | 340 | 203 | 9 | 284 | 595 | 193 | 516 | 4.67e-33 | 133 |
| Msa1203490 | AT2G39690.3 | 38.462 | 182 | 97 | 4 | 284 | 453 | 177 | 355 | 1.10e-32 | 129 |
| Msa1203490 | AT1G43020.1 | 31.330 | 233 | 144 | 6 | 372 | 596 | 211 | 435 | 8.69e-27 | 114 |
| Msa1203490 | AT1G21060.2 | 27.356 | 329 | 206 | 7 | 282 | 597 | 185 | 493 | 1.73e-26 | 114 |
| Msa1203490 | AT1G21060.1 | 27.052 | 329 | 207 | 6 | 282 | 597 | 197 | 505 | 2.31e-26 | 113 |
| Msa1203490 | AT5G47380.2 | 29.787 | 235 | 137 | 7 | 279 | 501 | 273 | 491 | 9.88e-23 | 102 |
| Msa1203490 | AT1G16750.2 | 31.553 | 206 | 105 | 5 | 285 | 455 | 178 | 382 | 1.60e-22 | 100 |
| Msa1203490 | AT5G47380.3 | 30.131 | 229 | 132 | 7 | 280 | 496 | 274 | 486 | 3.22e-22 | 100 |
| Msa1203490 | AT5G66600.12 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 6.49e-22 | 100 |
| Msa1203490 | AT5G66600.11 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 6.49e-22 | 100 |
| Msa1203490 | AT5G66600.6 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 6.49e-22 | 100 |
| Msa1203490 | AT5G66600.13 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 6.49e-22 | 100 |
| Msa1203490 | AT4G08550.1 | 28.571 | 238 | 156 | 6 | 358 | 591 | 408 | 635 | 1.27e-19 | 93.6 |
| Msa1203490 | AT4G08550.2 | 28.571 | 238 | 156 | 6 | 358 | 591 | 462 | 689 | 1.53e-19 | 93.2 |
| Msa1203490 | AT3G18900.1 | 30.435 | 230 | 131 | 5 | 277 | 498 | 228 | 436 | 1.33e-17 | 86.3 |
| Msa1203490 | AT5G66600.10 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.14e-16 | 82.4 |
| Msa1203490 | AT5G66600.8 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.14e-16 | 82.4 |
| Msa1203490 | AT5G66600.5 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.14e-16 | 82.4 |
| Msa1203490 | AT5G66600.15 | 28.877 | 187 | 115 | 2 | 280 | 450 | 224 | 408 | 3.91e-16 | 81.6 |
| Msa1203490 | AT3G11920.1 | 32.749 | 171 | 111 | 4 | 386 | 554 | 426 | 594 | 1.11e-15 | 80.9 |
| Msa1203490 | AT3G18900.2 | 32.203 | 177 | 96 | 4 | 277 | 450 | 228 | 383 | 8.00e-15 | 77.0 |
| Msa1203490 | AT1G76620.2 | 24.896 | 241 | 145 | 7 | 284 | 498 | 193 | 423 | 2.99e-13 | 72.4 |
| Msa1203490 | AT1G43020.3 | 32.353 | 136 | 83 | 4 | 372 | 501 | 211 | 343 | 4.30e-13 | 71.2 |
Find 111 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTTATTAATATTATTA+AGG | 0.143285 | 8_1:-57761551 | None:intergenic |
| TTCTTATTTCATCAGGTAAT+TGG | 0.190698 | 8_1:-57766401 | None:intergenic |
| TTGAGTGGAGATTTCTTTAA+AGG | 0.208758 | 8_1:-57763513 | None:intergenic |
| GTGAAAGCAAGAAGCATATT+TGG | 0.230491 | 8_1:+57765268 | Msa1203490:CDS |
| AATTACTTCTCATGTGGTTT+TGG | 0.235218 | 8_1:-57763206 | None:intergenic |
| AAAGGACCTTGATTCTTTAT+TGG | 0.238431 | 8_1:+57766365 | Msa1203490:CDS |
| AGATCTTCTGAAACTCTATT+TGG | 0.238770 | 8_1:-57763815 | None:intergenic |
| TGGACCAACTTCTCTTGTTT+TGG | 0.239386 | 8_1:-57763990 | None:intergenic |
| ACAACCATTTCCGGACTTTC+CGG | 0.243264 | 8_1:-57764821 | None:intergenic |
| AAGAATTTATGTGAAATTAA+AGG | 0.244278 | 8_1:+57764016 | Msa1203490:CDS |
| ATTTCACATAAATTCTTATA+TGG | 0.245460 | 8_1:-57764010 | None:intergenic |
| TTGGAAGTGTACTTCGAATA+TGG | 0.263651 | 8_1:+57766669 | Msa1203490:three_prime_UTR |
| AATAATTACAGTGGGAATAA+TGG | 0.270800 | 8_1:+57763357 | Msa1203490:CDS |
| AAACATTGCATTTGTTGTTC+TGG | 0.321552 | 8_1:-57764056 | None:intergenic |
| ATTAATGCTACAACCATTTC+CGG | 0.323435 | 8_1:-57764830 | None:intergenic |
| CTTTCTGCTAGAAGCACTTC+TGG | 0.331481 | 8_1:-57763310 | None:intergenic |
| TCTAACATATTTGTGAGAAT+TGG | 0.347512 | 8_1:+57763851 | Msa1203490:CDS |
| ATATTTATTAATATTATTAA+GGG | 0.356914 | 8_1:-57761550 | None:intergenic |
| AAGAGCATTTACAAGACCTT+TGG | 0.361369 | 8_1:+57762599 | Msa1203490:CDS |
| CTAATAAATCACTTATTCAT+TGG | 0.361785 | 8_1:-57766521 | None:intergenic |
| ATAATTACAGTGGGAATAAT+GGG | 0.374737 | 8_1:+57763358 | Msa1203490:CDS |
| CATGGATCAATTAAAGTTGC+AGG | 0.385031 | 8_1:+57763557 | Msa1203490:CDS |
| GCTTGGTTTCTTATTTCATC+AGG | 0.387730 | 8_1:-57766408 | None:intergenic |
| CTTCAAGGCATTTAACTGCT+TGG | 0.390658 | 8_1:-57766425 | None:intergenic |
| ACTCACTTTCCCTTCCTTCA+AGG | 0.391301 | 8_1:-57766440 | None:intergenic |
| AGAGCATTTACAAGACCTTT+GGG | 0.393492 | 8_1:+57762600 | Msa1203490:CDS |
| ATTATCTGCTGGTGAATTTG+AGG | 0.414829 | 8_1:-57763768 | None:intergenic |
| ACTTGCTTCTTTGAACTTGA+AGG | 0.419293 | 8_1:+57764353 | Msa1203490:CDS |
| GATTATTTACAAGCTTCAAT+TGG | 0.420391 | 8_1:+57766279 | Msa1203490:CDS |
| CAAGCAGTTAAATGCCTTGA+AGG | 0.420884 | 8_1:+57766426 | Msa1203490:CDS |
| GATACTAATTCCCAAGTTGT+TGG | 0.421968 | 8_1:+57766320 | Msa1203490:CDS |
| ACCTTGATTCTTTATTGGAC+TGG | 0.422533 | 8_1:+57766370 | Msa1203490:CDS |
| AATATTATTAAGGGTGATGT+TGG | 0.424785 | 8_1:-57761541 | None:intergenic |
| ATTGTGGACTTACAAACTTA+AGG | 0.436584 | 8_1:-57765069 | None:intergenic |
| GTAAAATTCAGGTACCTACT+TGG | 0.436814 | 8_1:+57764327 | Msa1203490:intron |
| ATGTGGAAAGCAGGAGAAGA+TGG | 0.444562 | 8_1:+57762358 | Msa1203490:intron |
| GGAAAGTGCAAATGTTACTA+AGG | 0.447874 | 8_1:-57765308 | None:intergenic |
| ACTTACAAACTTAAGGTGAT+AGG | 0.449376 | 8_1:-57765062 | None:intergenic |
| TAATTCCCAAGTTGTTGGAT+TGG | 0.451039 | 8_1:+57766325 | Msa1203490:CDS |
| GATTCTGAACAGATATCATA+AGG | 0.452530 | 8_1:-57763968 | None:intergenic |
| CTTGCTTCTTTGAACTTGAA+GGG | 0.457672 | 8_1:+57764354 | Msa1203490:CDS |
| CTTACAAACTTAAGGTGATA+GGG | 0.461257 | 8_1:-57765061 | None:intergenic |
| TCTGACACTTTATTATCTGC+TGG | 0.461649 | 8_1:-57763779 | None:intergenic |
| CAGGAGAAGATGGAAGGAGG+AGG | 0.462824 | 8_1:+57762368 | Msa1203490:intron |
| CTGTAATTATTGACAGTGTC+AGG | 0.470070 | 8_1:-57763345 | None:intergenic |
| TACAGCATCACAAGTTGATA+AGG | 0.472246 | 8_1:+57766236 | Msa1203490:CDS |
| CTGCAACTTTAATTGATCCA+TGG | 0.472815 | 8_1:-57763556 | None:intergenic |
| AACCTGAAACTAAAATCATA+AGG | 0.475747 | 8_1:-57766489 | None:intergenic |
| AAGAAGCAAGTTTCCCAAGT+AGG | 0.475798 | 8_1:-57764341 | None:intergenic |
| TTTGGTTGCCTTAGCTGGAA+TGG | 0.476109 | 8_1:+57763714 | Msa1203490:intron |
| ACATGGCATACCGGAAAGTC+CGG | 0.480935 | 8_1:+57764811 | Msa1203490:CDS |
| ATGGAAGGAGGAGGGAGCAA+AGG | 0.484168 | 8_1:+57762377 | Msa1203490:CDS |
| CATACCGGAAAGTCCGGAAA+TGG | 0.487177 | 8_1:+57764817 | Msa1203490:CDS |
| CTAACATATGGAGGAAGATA+AGG | 0.489236 | 8_1:-57762642 | None:intergenic |
| GAATCCAAAACAAGAGAAGT+TGG | 0.490044 | 8_1:+57763986 | Msa1203490:CDS |
| TCTAGCTGAGGTGGCAGTGT+TGG | 0.492182 | 8_1:+57763068 | Msa1203490:CDS |
| TTTCAGGCAACAATAGTAGT+AGG | 0.492409 | 8_1:+57764989 | Msa1203490:intron |
| CAGTTAAATGCCTTGAAGGA+AGG | 0.493380 | 8_1:+57766430 | Msa1203490:CDS |
| TTGCACTTTCCTGTGGAAGT+TGG | 0.498705 | 8_1:+57765320 | Msa1203490:CDS |
| GGTTGTAGCATTAATGCAAA+AGG | 0.498874 | 8_1:+57764838 | Msa1203490:CDS |
| AAATAAGACCCAGAAGTTGA+AGG | 0.499068 | 8_1:-57763908 | None:intergenic |
| AGCAAGAAGCATATTTGGAC+TGG | 0.499364 | 8_1:+57765273 | Msa1203490:CDS |
| GGCAGTGTTGGAAGAAGAAG+TGG | 0.508158 | 8_1:+57763080 | Msa1203490:CDS |
| AAGTGAGTCTCTTTCAAAGT+TGG | 0.509880 | 8_1:+57766455 | Msa1203490:CDS |
| TGTTGGAAGAAGAAGTGGTT+AGG | 0.511515 | 8_1:+57763085 | Msa1203490:CDS |
| GGAGATTATCAGAACATGAA+AGG | 0.515426 | 8_1:+57763735 | Msa1203490:CDS |
| TAAATACCAATCCAACAACT+TGG | 0.518404 | 8_1:-57766331 | None:intergenic |
| CATCTATACAAGAAGAAGGA+AGG | 0.518813 | 8_1:+57763412 | Msa1203490:CDS |
| GAGATTATCAGAACATGAAA+GGG | 0.519637 | 8_1:+57763736 | Msa1203490:CDS |
| AGTTAAATGCCTTGAAGGAA+GGG | 0.523554 | 8_1:+57766431 | Msa1203490:CDS |
| TCCAGTCCAATAAAGAATCA+AGG | 0.524058 | 8_1:-57766371 | None:intergenic |
| ATCTATACAAGAAGAAGGAA+GGG | 0.524855 | 8_1:+57763413 | Msa1203490:CDS |
| TTCAGGTAGATAAGTTGAAG+AGG | 0.528029 | 8_1:+57762538 | Msa1203490:intron |
| TAAAATTCAGGTACCTACTT+GGG | 0.539959 | 8_1:+57764328 | Msa1203490:intron |
| GGAAAGCAGGAGAAGATGGA+AGG | 0.544627 | 8_1:+57762362 | Msa1203490:intron |
| GACATTGGAACTTCTAGCTG+AGG | 0.548247 | 8_1:+57763056 | Msa1203490:intron |
| GCTTTGAATTACTTCTCATG+TGG | 0.555149 | 8_1:-57763212 | None:intergenic |
| AAGCAGGAGAAGATGGAAGG+AGG | 0.556298 | 8_1:+57762365 | Msa1203490:intron |
| ACTGAGAGAGTAGAAGAAGG+AGG | 0.559818 | 8_1:-57761465 | None:intergenic |
| TGAGCTGATTCATGTTTGAG+TGG | 0.563105 | 8_1:-57763528 | None:intergenic |
| TTCTCATCTATACAAGAAGA+AGG | 0.568329 | 8_1:+57763408 | Msa1203490:CDS |
| TGTGAGAATTGGTACATCCA+AGG | 0.569116 | 8_1:+57763862 | Msa1203490:CDS |
| CAAGTTGTGAATTTCAGACA+AGG | 0.573745 | 8_1:+57763117 | Msa1203490:CDS |
| TCTATACAAGAAGAAGGAAG+GGG | 0.575452 | 8_1:+57763414 | Msa1203490:CDS |
| GGAAGATAAGGCGGAAGACG+AGG | 0.581353 | 8_1:-57762630 | None:intergenic |
| AAGACTGAGAGAGTAGAAGA+AGG | 0.582005 | 8_1:-57761468 | None:intergenic |
| GTAACATTTGCACTTTCCTG+TGG | 0.584614 | 8_1:+57765313 | Msa1203490:CDS |
| GAAGCATATTTGGACTGGAA+TGG | 0.585611 | 8_1:+57765278 | Msa1203490:CDS |
| TGAATCAGCTCAGAAGTCCA+TGG | 0.591207 | 8_1:+57763539 | Msa1203490:CDS |
| GAAAGTGCAAATGTTACTAA+GGG | 0.594562 | 8_1:-57765307 | None:intergenic |
| AGGAGAAGATGGAAGGAGGA+GGG | 0.595319 | 8_1:+57762369 | Msa1203490:intron |
| TGTTCTGGTGAGATCAACAT+TGG | 0.595419 | 8_1:-57764041 | None:intergenic |
| ATACTTAGAACATGGCATAC+CGG | 0.606507 | 8_1:+57764802 | Msa1203490:CDS |
| AAATACCAATCCAACAACTT+GGG | 0.609275 | 8_1:-57766330 | None:intergenic |
| AGGTGAAGACCAACTTCCAC+AGG | 0.609752 | 8_1:-57765329 | None:intergenic |
| ATTGGAACTTCTAGCTGAGG+TGG | 0.610303 | 8_1:+57763059 | Msa1203490:CDS |
| TAAGTGATTTATTAGTGTGG+TGG | 0.611464 | 8_1:+57766529 | Msa1203490:three_prime_UTR |
| CGATGACTTACTTCAATCTG+TGG | 0.611618 | 8_1:-57764084 | None:intergenic |
| TTACAAACTTAAGGTGATAG+GGG | 0.614980 | 8_1:-57765060 | None:intergenic |
| TTATTTCAGCCAATGTAGCA+AGG | 0.617147 | 8_1:+57763925 | Msa1203490:CDS |
| AGAGAGAGACTAACATATGG+AGG | 0.635286 | 8_1:-57762651 | None:intergenic |
| GACACTGTCAATAATTACAG+TGG | 0.635952 | 8_1:+57763348 | Msa1203490:CDS |
| ACACTGTCAATAATTACAGT+GGG | 0.639622 | 8_1:+57763349 | Msa1203490:CDS |
| AATTTAATTCAATGACAACA+AGG | 0.640125 | 8_1:+57763265 | Msa1203490:CDS |
| CTGGCAAGAGAATTCTGTGG+TGG | 0.650669 | 8_1:-57763291 | None:intergenic |
| TTGTAGGCATACTTAGAACA+TGG | 0.651116 | 8_1:+57764794 | Msa1203490:intron |
| CAGGCAACAATAGTAGTAGG+AGG | 0.658457 | 8_1:+57764992 | Msa1203490:intron |
| ACATATGGAGGAAGATAAGG+CGG | 0.675886 | 8_1:-57762639 | None:intergenic |
| GAATAAGTGATTTATTAGTG+TGG | 0.688365 | 8_1:+57766526 | Msa1203490:exon |
| AGACGAGGCAAAGATCCCAA+AGG | 0.692046 | 8_1:-57762615 | None:intergenic |
| CTTCTGGCAAGAGAATTCTG+TGG | 0.743682 | 8_1:-57763294 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATTAATATTATTAA+GGG | - | chr8_1:57761553-57761572 | None:intergenic | 0.0% |
| !!! | AACATTATTTAATGTTTTTT+TGG | - | chr8_1:57766600-57766619 | None:intergenic | 10.0% |
| !! | AAAAAACATTAAATAATGTT+TGG | + | chr8_1:57766600-57766619 | Msa1203490:three_prime_UTR | 10.0% |
| !!! | TTTTAATATTTCTATGTTGT+TGG | + | chr8_1:57761977-57761996 | Msa1203490:intron | 15.0% |
| !!! | AATTTTGAAAAACTATGTTT+TGG | + | chr8_1:57762049-57762068 | Msa1203490:intron | 15.0% |
| !!! | TTTGTTTAATCTTTTTGTTT+TGG | + | chr8_1:57763696-57763715 | Msa1203490:intron | 15.0% |
| !! | ATTTCACATAAATTCTTATA+TGG | - | chr8_1:57764013-57764032 | None:intergenic | 15.0% |
| !! | AAGAATTTATGTGAAATTAA+AGG | + | chr8_1:57764016-57764035 | Msa1203490:CDS | 15.0% |
| !! | TTATCATCATTAAGTTTATT+TGG | - | chr8_1:57764648-57764667 | None:intergenic | 15.0% |
| !! | AATAAACTTAATGATGATAA+AGG | + | chr8_1:57764648-57764667 | Msa1203490:intron | 15.0% |
| !!! | GTTATCACTTTAAAATATTT+TGG | + | chr8_1:57764763-57764782 | Msa1203490:intron | 15.0% |
| !! | AAACTATAAAATCAAAAGAA+AGG | - | chr8_1:57765100-57765119 | None:intergenic | 15.0% |
| !! | GAAATAAAGATAGAAATTAA+GGG | - | chr8_1:57765209-57765228 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTACTTAAATCAA+TGG | + | chr8_1:57765388-57765407 | Msa1203490:intron | 15.0% |
| !!! | AATTAAATTTTGAGTGAAAT+AGG | - | chr8_1:57765940-57765959 | None:intergenic | 15.0% |
| !!! | CATTTTTTACTTTTAGTTTT+AGG | + | chr8_1:57765979-57765998 | Msa1203490:intron | 15.0% |
| !!! | TTTTTGTTTTGGTTTAATTA+AGG | + | chr8_1:57766203-57766222 | Msa1203490:intron | 15.0% |
| !! | AAATGAAATGATTATTGTAG+CGG | - | chr8_1:57761649-57761668 | None:intergenic | 20.0% |
| !!! | AAAGAACAAGATTTTAGATT+TGG | - | chr8_1:57762232-57762251 | None:intergenic | 20.0% |
| !! | CGAAGAATTTAGTATATATT+TGG | + | chr8_1:57762682-57762701 | Msa1203490:intron | 20.0% |
| !!! | TTTTAGCTTCAATAAAATCA+CGG | - | chr8_1:57762871-57762890 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGAAGTTGATTTT+TGG | + | chr8_1:57763001-57763020 | Msa1203490:intron | 20.0% |
| !! | AATTTAATTCAATGACAACA+AGG | + | chr8_1:57763265-57763284 | Msa1203490:CDS | 20.0% |
| !! | TGTCAGTATAATTACAATAT+TGG | - | chr8_1:57764145-57764164 | None:intergenic | 20.0% |
| !!! | TAATCTTTTGTGTAAAATTC+AGG | + | chr8_1:57764316-57764335 | Msa1203490:intron | 20.0% |
| !!! | TATTTTGGTTTTCATATTGT+AGG | + | chr8_1:57764778-57764797 | Msa1203490:intron | 20.0% |
| !! | GGAAATAAAGATAGAAATTA+AGG | - | chr8_1:57765210-57765229 | None:intergenic | 20.0% |
| !!! | CAGTACTCTTTTTTTTTTTT+TGG | + | chr8_1:57765423-57765442 | Msa1203490:intron | 20.0% |
| !!! | ACTTTTGGTATAATTATGTT+TGG | + | chr8_1:57765626-57765645 | Msa1203490:intron | 20.0% |
| !! | AATAAATATGGATTTGTGTT+AGG | - | chr8_1:57766110-57766129 | None:intergenic | 20.0% |
| !! | ATTAAATTATATTGCACTGA+AGG | + | chr8_1:57766174-57766193 | Msa1203490:intron | 20.0% |
| !! | CTAATAAATCACTTATTCAT+TGG | - | chr8_1:57766524-57766543 | None:intergenic | 20.0% |
| !!! | TGGATATTTTTTTTGTACAA+TGG | + | chr8_1:57766549-57766568 | Msa1203490:three_prime_UTR | 20.0% |
| !!! | TGAAAAATCACATGTATTTT+TGG | + | chr8_1:57766650-57766669 | Msa1203490:three_prime_UTR | 20.0% |
| ! | AATATTATTAAGGGTGATGT+TGG | - | chr8_1:57761544-57761563 | None:intergenic | 25.0% |
| ! | AATGAAATGATTATTGTAGC+GGG | - | chr8_1:57761648-57761667 | None:intergenic | 25.0% |
| !! | AAGAAAAGAGCTACTTTAAT+AGG | + | chr8_1:57762109-57762128 | Msa1203490:intron | 25.0% |
| !!! | GTTTTGTTTATTGTTGAATG+TGG | + | chr8_1:57762341-57762360 | Msa1203490:intron | 25.0% |
| !! | AAATGTAGCTTTTATCTATG+TGG | + | chr8_1:57762890-57762909 | Msa1203490:intron | 25.0% |
| !!! | TGTGTTATTGTTTTAGACAT+TGG | + | chr8_1:57763041-57763060 | Msa1203490:intron | 25.0% |
| !! | AATAGGGTCATTCAAATTTT+CGG | - | chr8_1:57763184-57763203 | None:intergenic | 25.0% |
| ! | AATAATTACAGTGGGAATAA+TGG | + | chr8_1:57763357-57763376 | Msa1203490:CDS | 25.0% |
| ! | ATAATTACAGTGGGAATAAT+GGG | + | chr8_1:57763358-57763377 | Msa1203490:CDS | 25.0% |
| !! | AGTTTAGATATTTTCTTCAC+TGG | - | chr8_1:57763486-57763505 | None:intergenic | 25.0% |
| !!! | CTATTTTAAACTATGAAGCA+CGG | - | chr8_1:57763637-57763656 | None:intergenic | 25.0% |
| ! | TCTAACATATTTGTGAGAAT+TGG | + | chr8_1:57763851-57763870 | Msa1203490:CDS | 25.0% |
| ! | TCATCATTAAGTTTATTTGG+CGG | - | chr8_1:57764645-57764664 | None:intergenic | 25.0% |
| ! | TTTAAAAAAACCGAACCAAA+TGG | - | chr8_1:57764699-57764718 | None:intergenic | 25.0% |
| ! | ATTGACCTATTACAATTTCA+GGG | - | chr8_1:57765503-57765522 | None:intergenic | 25.0% |
| ! | TATGTTTGGTAAAAAAACCT+AGG | + | chr8_1:57765640-57765659 | Msa1203490:intron | 25.0% |
| !!! | GAGTTATTTTGACTTTACTT+CGG | - | chr8_1:57765681-57765700 | None:intergenic | 25.0% |
| !! | TTGTGTGTGATAATTTTGTT+GGG | - | chr8_1:57765707-57765726 | None:intergenic | 25.0% |
| !! | ATTGTGTGTGATAATTTTGT+TGG | - | chr8_1:57765708-57765727 | None:intergenic | 25.0% |
| ! | AGTTTAGCTATTAGAAAACA+TGG | - | chr8_1:57765801-57765820 | None:intergenic | 25.0% |
| ! | TTGCTAATTCGTAAAATTCA+AGG | + | chr8_1:57765869-57765888 | Msa1203490:intron | 25.0% |
| ! | TAATTCGTAAAATTCAAGGA+TGG | + | chr8_1:57765873-57765892 | Msa1203490:intron | 25.0% |
| !!! | TTTTGGTTTAATTAAGGTGA+GGG | + | chr8_1:57766209-57766228 | Msa1203490:intron | 25.0% |
| ! | GATTATTTACAAGCTTCAAT+TGG | + | chr8_1:57766279-57766298 | Msa1203490:CDS | 25.0% |
| !! | GTATTTACTAGATTTTGCAA+AGG | + | chr8_1:57766347-57766366 | Msa1203490:CDS | 25.0% |
| !! | TTCTTATTTCATCAGGTAAT+TGG | - | chr8_1:57766404-57766423 | None:intergenic | 25.0% |
| ! | AACCTGAAACTAAAATCATA+AGG | - | chr8_1:57766492-57766511 | None:intergenic | 25.0% |
| ! | GAATAAGTGATTTATTAGTG+TGG | + | chr8_1:57766526-57766545 | Msa1203490:exon | 25.0% |
| !!! | TTTTTCAGAAATGTGTCATA+GGG | - | chr8_1:57766637-57766656 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGAAATGTGTCAT+AGG | - | chr8_1:57766638-57766657 | None:intergenic | 25.0% |
| ! | CTGAAACACTTTTCTTTTCT+TGG | + | chr8_1:57761418-57761437 | Msa1203490:five_prime_UTR | 30.0% |
| ! | AACCTAGCATTTTTCTTTTC+TGG | + | chr8_1:57761597-57761616 | Msa1203490:intron | 30.0% |
| ! | ACCTAGCATTTTTCTTTTCT+GGG | + | chr8_1:57761598-57761617 | Msa1203490:intron | 30.0% |
| !! | CATTGTTTTCTGAGAAAAAG+TGG | + | chr8_1:57761835-57761854 | Msa1203490:five_prime_UTR | 30.0% |
| ATTTCTATGTTGTTGGAAAG+TGG | + | chr8_1:57761984-57762003 | Msa1203490:intron | 30.0% | |
| TACTTTAATAGGTACAAGCA+TGG | + | chr8_1:57762120-57762139 | Msa1203490:intron | 30.0% | |
| ATAGTAATTATGAAGCCTCA+TGG | + | chr8_1:57762171-57762190 | Msa1203490:intron | 30.0% | |
| !!! | TAGTGATGTTTTGAAAGCTT+TGG | + | chr8_1:57762514-57762533 | Msa1203490:intron | 30.0% |
| ! | AATTACTTCTCATGTGGTTT+TGG | - | chr8_1:57763209-57763228 | None:intergenic | 30.0% |
| ACACTGTCAATAATTACAGT+GGG | + | chr8_1:57763349-57763368 | Msa1203490:CDS | 30.0% | |
| TTCTCATCTATACAAGAAGA+AGG | + | chr8_1:57763408-57763427 | Msa1203490:CDS | 30.0% | |
| ATCTATACAAGAAGAAGGAA+GGG | + | chr8_1:57763413-57763432 | Msa1203490:CDS | 30.0% | |
| TTGAGTGGAGATTTCTTTAA+AGG | - | chr8_1:57763516-57763535 | None:intergenic | 30.0% | |
| AGGTAATTACACTTATGTGT+CGG | + | chr8_1:57763577-57763596 | Msa1203490:intron | 30.0% | |
| GAGATTATCAGAACATGAAA+GGG | + | chr8_1:57763736-57763755 | Msa1203490:CDS | 30.0% | |
| !! | AGATCTTCTGAAACTCTATT+TGG | - | chr8_1:57763818-57763837 | None:intergenic | 30.0% |
| TACATCCAAGGAAAAATTTG+TGG | + | chr8_1:57763874-57763893 | Msa1203490:CDS | 30.0% | |
| ! | TGATTCCACAAATTTTTCCT+TGG | - | chr8_1:57763882-57763901 | None:intergenic | 30.0% |
| GATTCTGAACAGATATCATA+AGG | - | chr8_1:57763971-57763990 | None:intergenic | 30.0% | |
| !! | AAACATTGCATTTGTTGTTC+TGG | - | chr8_1:57764059-57764078 | None:intergenic | 30.0% |
| TAAAATTCAGGTACCTACTT+GGG | + | chr8_1:57764328-57764347 | Msa1203490:intron | 30.0% | |
| ! | AGAATGCAAGTTTTTCTTGA+TGG | - | chr8_1:57764386-57764405 | None:intergenic | 30.0% |
| ATCAAGAAAAACTTGCATTC+TGG | + | chr8_1:57764385-57764404 | Msa1203490:CDS | 30.0% | |
| ATTAATGCTACAACCATTTC+CGG | - | chr8_1:57764833-57764852 | None:intergenic | 30.0% | |
| TTACAAACTTAAGGTGATAG+GGG | - | chr8_1:57765063-57765082 | None:intergenic | 30.0% | |
| CTTACAAACTTAAGGTGATA+GGG | - | chr8_1:57765064-57765083 | None:intergenic | 30.0% | |
| ACTTACAAACTTAAGGTGAT+AGG | - | chr8_1:57765065-57765084 | None:intergenic | 30.0% | |
| ATTGTGGACTTACAAACTTA+AGG | - | chr8_1:57765072-57765091 | None:intergenic | 30.0% | |
| CAAAAGAAAGGACAAAATTG+TGG | - | chr8_1:57765088-57765107 | None:intergenic | 30.0% | |
| ! | GTTAATTGCAACATGCTTTT+AGG | - | chr8_1:57765182-57765201 | None:intergenic | 30.0% |
| !!! | TCATCATTTTTTGCAGCTTT+TGG | - | chr8_1:57765247-57765266 | None:intergenic | 30.0% |
| ! | GAAAGTGCAAATGTTACTAA+GGG | - | chr8_1:57765310-57765329 | None:intergenic | 30.0% |
| TTTGTCCCTGAAATTGTAAT+AGG | + | chr8_1:57765495-57765514 | Msa1203490:intron | 30.0% | |
| GATTGACCTATTACAATTTC+AGG | - | chr8_1:57765504-57765523 | None:intergenic | 30.0% | |
| ACATAACATTGTCTAACAGA+AGG | - | chr8_1:57765535-57765554 | None:intergenic | 30.0% | |
| ! | CAATGGACGAAATTAACTTT+TGG | + | chr8_1:57765611-57765630 | Msa1203490:intron | 30.0% |
| GGAAATAAAAAGTAACTCCT+AGG | - | chr8_1:57765660-57765679 | None:intergenic | 30.0% | |
| TGCTACATCTTCATTTAATG+TGG | + | chr8_1:57765771-57765790 | Msa1203490:intron | 30.0% | |
| ! | AACCTAACTTCCTAAACTTT+TGG | - | chr8_1:57766066-57766085 | None:intergenic | 30.0% |
| TAGGAAGTTAGGTTAATGAA+TGG | + | chr8_1:57766072-57766091 | Msa1203490:intron | 30.0% | |
| CCACATGCAGAAAATAAATA+TGG | - | chr8_1:57766122-57766141 | None:intergenic | 30.0% | |
| !! | CCATATTTATTTTCTGCATG+TGG | + | chr8_1:57766119-57766138 | Msa1203490:intron | 30.0% |
| !!! | GAAGGAGCAATTTTTTGTTT+TGG | + | chr8_1:57766192-57766211 | Msa1203490:intron | 30.0% |
| !!! | GTTTTGGTTTAATTAAGGTG+AGG | + | chr8_1:57766208-57766227 | Msa1203490:intron | 30.0% |
| AAATACCAATCCAACAACTT+GGG | - | chr8_1:57766333-57766352 | None:intergenic | 30.0% | |
| TAAATACCAATCCAACAACT+TGG | - | chr8_1:57766334-57766353 | None:intergenic | 30.0% | |
| AAAGGACCTTGATTCTTTAT+TGG | + | chr8_1:57766365-57766384 | Msa1203490:CDS | 30.0% | |
| !!! | AGCCTTATGATTTTAGTTTC+AGG | + | chr8_1:57766487-57766506 | Msa1203490:CDS | 30.0% |
| TAAGTGATTTATTAGTGTGG+TGG | + | chr8_1:57766529-57766548 | Msa1203490:three_prime_UTR | 30.0% | |
| ACCCAGAAAAGAAAAATGCT+AGG | - | chr8_1:57761602-57761621 | None:intergenic | 35.0% | |
| GGGAAAACTGAATGTAAAAC+GGG | - | chr8_1:57761628-57761647 | None:intergenic | 35.0% | |
| CGGGAAAACTGAATGTAAAA+CGG | - | chr8_1:57761629-57761648 | None:intergenic | 35.0% | |
| CTCATGGTTAACTGACAAAA+GGG | + | chr8_1:57762187-57762206 | Msa1203490:intron | 35.0% | |
| TATTGTTGAATGTGGAAAGC+AGG | + | chr8_1:57762349-57762368 | Msa1203490:intron | 35.0% | |
| !!! | GTTTTGAAAGCTTTGGTTTC+AGG | + | chr8_1:57762521-57762540 | Msa1203490:intron | 35.0% |
| ! | TTCAGGTAGATAAGTTGAAG+AGG | + | chr8_1:57762538-57762557 | Msa1203490:intron | 35.0% |
| !! | AAGAGCATTTACAAGACCTT+TGG | + | chr8_1:57762599-57762618 | Msa1203490:CDS | 35.0% |
| ! | AGAGCATTTACAAGACCTTT+GGG | + | chr8_1:57762600-57762619 | Msa1203490:CDS | 35.0% |
| CTAACATATGGAGGAAGATA+AGG | - | chr8_1:57762645-57762664 | None:intergenic | 35.0% | |
| AAGAGAGAGAGACTAACATA+TGG | - | chr8_1:57762657-57762676 | None:intergenic | 35.0% | |
| TGAGTTTGACAAAACCAAAG+TGG | + | chr8_1:57762843-57762862 | Msa1203490:intron | 35.0% | |
| CTCATTGTCAGATGCATATT+TGG | - | chr8_1:57762938-57762957 | None:intergenic | 35.0% | |
| CAAGTTGTGAATTTCAGACA+AGG | + | chr8_1:57763117-57763136 | Msa1203490:CDS | 35.0% | |
| !!! | TCATGTGGTTTTGGTCAATA+GGG | - | chr8_1:57763200-57763219 | None:intergenic | 35.0% |
| ! | GCTTTGAATTACTTCTCATG+TGG | - | chr8_1:57763215-57763234 | None:intergenic | 35.0% |
| CTGTAATTATTGACAGTGTC+AGG | - | chr8_1:57763348-57763367 | None:intergenic | 35.0% | |
| GACACTGTCAATAATTACAG+TGG | + | chr8_1:57763348-57763367 | Msa1203490:CDS | 35.0% | |
| CATCTATACAAGAAGAAGGA+AGG | + | chr8_1:57763412-57763431 | Msa1203490:CDS | 35.0% | |
| TCTATACAAGAAGAAGGAAG+GGG | + | chr8_1:57763414-57763433 | Msa1203490:CDS | 35.0% | |
| CTGCAACTTTAATTGATCCA+TGG | - | chr8_1:57763559-57763578 | None:intergenic | 35.0% | |
| CATGGATCAATTAAAGTTGC+AGG | + | chr8_1:57763557-57763576 | Msa1203490:CDS | 35.0% | |
| GGTAATTACACTTATGTGTC+GGG | + | chr8_1:57763578-57763597 | Msa1203490:intron | 35.0% | |
| GTAATTACACTTATGTGTCG+GGG | + | chr8_1:57763579-57763598 | Msa1203490:intron | 35.0% | |
| GGAGATTATCAGAACATGAA+AGG | + | chr8_1:57763735-57763754 | Msa1203490:CDS | 35.0% | |
| ATTATCTGCTGGTGAATTTG+AGG | - | chr8_1:57763771-57763790 | None:intergenic | 35.0% | |
| TCTGACACTTTATTATCTGC+TGG | - | chr8_1:57763782-57763801 | None:intergenic | 35.0% | |
| TCAAAAACACCTTCAACTTC+TGG | + | chr8_1:57763899-57763918 | Msa1203490:CDS | 35.0% | |
| CAAAAACACCTTCAACTTCT+GGG | + | chr8_1:57763900-57763919 | Msa1203490:CDS | 35.0% | |
| AAATAAGACCCAGAAGTTGA+AGG | - | chr8_1:57763911-57763930 | None:intergenic | 35.0% | |
| TTATTTCAGCCAATGTAGCA+AGG | + | chr8_1:57763925-57763944 | Msa1203490:CDS | 35.0% | |
| ! | GATCTTTTTCCTTGCTACAT+TGG | - | chr8_1:57763937-57763956 | None:intergenic | 35.0% |
| GAATCCAAAACAAGAGAAGT+TGG | + | chr8_1:57763986-57764005 | Msa1203490:CDS | 35.0% | |
| TTGAATATAACCAGACGTGT+CGG | + | chr8_1:57764207-57764226 | Msa1203490:intron | 35.0% | |
| CTTTAGATTGAAGATGTGTC+TGG | - | chr8_1:57764242-57764261 | None:intergenic | 35.0% | |
| TCGTGTTAGTTACTAACTGT+TGG | + | chr8_1:57764264-57764283 | Msa1203490:intron | 35.0% | |
| GTAAAATTCAGGTACCTACT+TGG | + | chr8_1:57764327-57764346 | Msa1203490:intron | 35.0% | |
| ACTTGCTTCTTTGAACTTGA+AGG | + | chr8_1:57764353-57764372 | Msa1203490:CDS | 35.0% | |
| CTTGCTTCTTTGAACTTGAA+GGG | + | chr8_1:57764354-57764373 | Msa1203490:CDS | 35.0% | |
| GGTAAATCATTGTGACAGAA+AGG | - | chr8_1:57764449-57764468 | None:intergenic | 35.0% | |
| CACACCTATAATTACAATGC+CGG | + | chr8_1:57764468-57764487 | Msa1203490:intron | 35.0% | |
| TAGTCCGGCATTGTAATTAT+AGG | - | chr8_1:57764475-57764494 | None:intergenic | 35.0% | |
| ATAGACCAAACTCTTTAGTC+CGG | - | chr8_1:57764490-57764509 | None:intergenic | 35.0% | |
| TTACAGTTCAATGTCTGGTT+CGG | - | chr8_1:57764561-57764580 | None:intergenic | 35.0% | |
| ACATTGAACTGTAAGTCCTT+TGG | + | chr8_1:57764567-57764586 | Msa1203490:intron | 35.0% | |
| ACGGTTGAACTATTATCCAA+AGG | - | chr8_1:57764586-57764605 | None:intergenic | 35.0% | |
| !!! | GTTTGATAGTAGTTTTGTCC+CGG | - | chr8_1:57764623-57764642 | None:intergenic | 35.0% |
| AGGCAGATTCAAAGTTCAAT+CGG | + | chr8_1:57764668-57764687 | Msa1203490:intron | 35.0% | |
| !!! | GGTTCGGTTTTTTTAAACAC+CGG | + | chr8_1:57764702-57764721 | Msa1203490:intron | 35.0% |
| CTCTTGACTGCAAGAATATT+TGG | - | chr8_1:57764744-57764763 | None:intergenic | 35.0% | |
| TTGTAGGCATACTTAGAACA+TGG | + | chr8_1:57764794-57764813 | Msa1203490:intron | 35.0% | |
| ATACTTAGAACATGGCATAC+CGG | + | chr8_1:57764802-57764821 | Msa1203490:CDS | 35.0% | |
| GGTTGTAGCATTAATGCAAA+AGG | + | chr8_1:57764838-57764857 | Msa1203490:CDS | 35.0% | |
| TTTCAGGCAACAATAGTAGT+AGG | + | chr8_1:57764989-57765008 | Msa1203490:intron | 35.0% | |
| ! | GTGAAAGCAAGAAGCATATT+TGG | + | chr8_1:57765268-57765287 | Msa1203490:CDS | 35.0% |
| ! | GGAAAGTGCAAATGTTACTA+AGG | - | chr8_1:57765311-57765330 | None:intergenic | 35.0% |
| AAAGTTGAGAAACATACTGC+AGG | - | chr8_1:57765352-57765371 | None:intergenic | 35.0% | |
| ! | GTGTGATAATTTTGTTGGGT+AGG | - | chr8_1:57765703-57765722 | None:intergenic | 35.0% |
| ! | CAATTTTGTCACTAGAGATG+TGG | + | chr8_1:57765724-57765743 | Msa1203490:intron | 35.0% |
| TTGTCACGCATCAATCAAAA+TGG | - | chr8_1:57765835-57765854 | None:intergenic | 35.0% | |
| !! | GATGGATTTGATTTGACTAG+CGG | + | chr8_1:57765891-57765910 | Msa1203490:intron | 35.0% |
| TGCCAAAAGTTTAGGAAGTT+AGG | + | chr8_1:57766061-57766080 | Msa1203490:intron | 35.0% | |
| !! | TACAGCATCACAAGTTGATA+AGG | + | chr8_1:57766236-57766255 | Msa1203490:CDS | 35.0% |
| GATACTAATTCCCAAGTTGT+TGG | + | chr8_1:57766320-57766339 | Msa1203490:CDS | 35.0% | |
| TAATTCCCAAGTTGTTGGAT+TGG | + | chr8_1:57766325-57766344 | Msa1203490:CDS | 35.0% | |
| ACCTTGATTCTTTATTGGAC+TGG | + | chr8_1:57766370-57766389 | Msa1203490:CDS | 35.0% | |
| TCCAGTCCAATAAAGAATCA+AGG | - | chr8_1:57766374-57766393 | None:intergenic | 35.0% | |
| ! | GCTTGGTTTCTTATTTCATC+AGG | - | chr8_1:57766411-57766430 | None:intergenic | 35.0% |
| AGTTAAATGCCTTGAAGGAA+GGG | + | chr8_1:57766431-57766450 | Msa1203490:CDS | 35.0% | |
| AAGTGAGTCTCTTTCAAAGT+TGG | + | chr8_1:57766455-57766474 | Msa1203490:CDS | 35.0% | |
| ! | TTGGAAGTGTACTTCGAATA+TGG | + | chr8_1:57766669-57766688 | Msa1203490:three_prime_UTR | 35.0% |
| ! | TCAACTCTGTTTTGTGGTAC+TGG | + | chr8_1:57761377-57761396 | Msa1203490:five_prime_UTR | 40.0% |
| AAGACTGAGAGAGTAGAAGA+AGG | - | chr8_1:57761471-57761490 | None:intergenic | 40.0% | |
| ! | CCTTTTGTCAGTTAACCATG+AGG | - | chr8_1:57762189-57762208 | None:intergenic | 40.0% |
| CCTCATGGTTAACTGACAAA+AGG | + | chr8_1:57762186-57762205 | Msa1203490:intron | 40.0% | |
| GGGAGCAAAGGAATGAAAAA+TGG | + | chr8_1:57762389-57762408 | Msa1203490:CDS | 40.0% | |
| ACATATGGAGGAAGATAAGG+CGG | - | chr8_1:57762642-57762661 | None:intergenic | 40.0% | |
| AGAGAGAGACTAACATATGG+AGG | - | chr8_1:57762654-57762673 | None:intergenic | 40.0% | |
| ACAGTGAGTTTGACGAAATC+AGG | + | chr8_1:57762709-57762728 | Msa1203490:intron | 40.0% | |
| AGCGTGCATGTTTGAATTGA+CGG | - | chr8_1:57762809-57762828 | None:intergenic | 40.0% | |
| !! | ATAAAATCACGGTGCCACTT+TGG | - | chr8_1:57762860-57762879 | None:intergenic | 40.0% |
| ATTTGGATTCGCGACGAATT+TGG | - | chr8_1:57762921-57762940 | None:intergenic | 40.0% | |
| TGTTGGAAGAAGAAGTGGTT+AGG | + | chr8_1:57763085-57763104 | Msa1203490:CDS | 40.0% | |
| !!! | CTCATGTGGTTTTGGTCAAT+AGG | - | chr8_1:57763201-57763220 | None:intergenic | 40.0% |
| ! | TGAGCTGATTCATGTTTGAG+TGG | - | chr8_1:57763531-57763550 | None:intergenic | 40.0% |
| !!! | TTTGTTTTGGTTGCCTTAGC+TGG | + | chr8_1:57763709-57763728 | Msa1203490:intron | 40.0% |
| GATAATCTCCATTCCAGCTA+AGG | - | chr8_1:57763725-57763744 | None:intergenic | 40.0% | |
| TGTGAGAATTGGTACATCCA+AGG | + | chr8_1:57763862-57763881 | Msa1203490:CDS | 40.0% | |
| !! | TGGACCAACTTCTCTTGTTT+TGG | - | chr8_1:57763993-57764012 | None:intergenic | 40.0% |
| TGTTCTGGTGAGATCAACAT+TGG | - | chr8_1:57764044-57764063 | None:intergenic | 40.0% | |
| CGATGACTTACTTCAATCTG+TGG | - | chr8_1:57764087-57764106 | None:intergenic | 40.0% | |
| TCTCTTTGCTAGTGTTTCAC+AGG | - | chr8_1:57764122-57764141 | None:intergenic | 40.0% | |
| AAGAAGCAAGTTTCCCAAGT+AGG | - | chr8_1:57764344-57764363 | None:intergenic | 40.0% | |
| CGGCATTGTAATTATAGGTG+TGG | - | chr8_1:57764470-57764489 | None:intergenic | 40.0% | |
| AGGACTTACAGTTCAATGTC+TGG | - | chr8_1:57764566-57764585 | None:intergenic | 40.0% | |
| !! | ACCGTTTTAAACTTCCGAAC+CGG | + | chr8_1:57764601-57764620 | Msa1203490:intron | 40.0% |
| !!! | ATAGTAGTTTTGTCCCGGTT+CGG | - | chr8_1:57764618-57764637 | None:intergenic | 40.0% |
| GTTCAATCGGTTGAACCATT+TGG | + | chr8_1:57764681-57764700 | Msa1203490:intron | 40.0% | |
| ATCGGTTGAACCATTTGGTT+CGG | + | chr8_1:57764686-57764705 | Msa1203490:intron | 40.0% | |
| TGGCAAGCTAAGATTTCATC+CGG | - | chr8_1:57764724-57764743 | None:intergenic | 40.0% | |
| CTTCTGACAATGCATGTTTC+AGG | + | chr8_1:57764973-57764992 | Msa1203490:intron | 40.0% | |
| ! | CTTTTGGACATGTCTGTTGA+TGG | - | chr8_1:57765231-57765250 | None:intergenic | 40.0% |
| ! | AGCAAGAAGCATATTTGGAC+TGG | + | chr8_1:57765273-57765292 | Msa1203490:CDS | 40.0% |
| ! | GAAGCATATTTGGACTGGAA+TGG | + | chr8_1:57765278-57765297 | Msa1203490:CDS | 40.0% |
| GTAACATTTGCACTTTCCTG+TGG | + | chr8_1:57765313-57765332 | Msa1203490:CDS | 40.0% | |
| TAATTTCGTCCATTGAGACG+TGG | - | chr8_1:57765606-57765625 | None:intergenic | 40.0% | |
| ! | CCTAAACTTTTGGCAGAGTT+TGG | - | chr8_1:57766056-57766075 | None:intergenic | 40.0% |
| CCAAACTCTGCCAAAAGTTT+AGG | + | chr8_1:57766053-57766072 | Msa1203490:intron | 40.0% | |
| ! | CTTCAAGGCATTTAACTGCT+TGG | - | chr8_1:57766428-57766447 | None:intergenic | 40.0% |
| CAAGCAGTTAAATGCCTTGA+AGG | + | chr8_1:57766426-57766445 | Msa1203490:CDS | 40.0% | |
| CAGTTAAATGCCTTGAAGGA+AGG | + | chr8_1:57766430-57766449 | Msa1203490:CDS | 40.0% | |
| !!! | CTCTGTTTTGTGGTACTGGT+AGG | + | chr8_1:57761381-57761400 | Msa1203490:five_prime_UTR | 45.0% |
| GAGGAAAAAGACGAGGTTGT+TGG | - | chr8_1:57761449-57761468 | None:intergenic | 45.0% | |
| GAAGAAGGAGGAAAAAGACG+AGG | - | chr8_1:57761456-57761475 | None:intergenic | 45.0% | |
| ACTGAGAGAGTAGAAGAAGG+AGG | - | chr8_1:57761468-57761487 | None:intergenic | 45.0% | |
| ATGTGGAAAGCAGGAGAAGA+TGG | + | chr8_1:57762358-57762377 | Msa1203490:intron | 45.0% | |
| ! | GACATTGGAACTTCTAGCTG+AGG | + | chr8_1:57763056-57763075 | Msa1203490:intron | 45.0% |
| ! | ATTGGAACTTCTAGCTGAGG+TGG | + | chr8_1:57763059-57763078 | Msa1203490:CDS | 45.0% |
| CTTCTGGCAAGAGAATTCTG+TGG | - | chr8_1:57763297-57763316 | None:intergenic | 45.0% | |
| !! | CTTTCTGCTAGAAGCACTTC+TGG | - | chr8_1:57763313-57763332 | None:intergenic | 45.0% |
| TGAATCAGCTCAGAAGTCCA+TGG | + | chr8_1:57763539-57763558 | Msa1203490:CDS | 45.0% | |
| TTTGGTTGCCTTAGCTGGAA+TGG | + | chr8_1:57763714-57763733 | Msa1203490:intron | 45.0% | |
| CAATGCCGGACTAAAGAGTT+TGG | + | chr8_1:57764482-57764501 | Msa1203490:intron | 45.0% | |
| !! | CCCGGTTCGGAAGTTTAAAA+CGG | - | chr8_1:57764605-57764624 | None:intergenic | 45.0% |
| !! | CCGTTTTAAACTTCCGAACC+GGG | + | chr8_1:57764602-57764621 | Msa1203490:intron | 45.0% |
| ACAACCATTTCCGGACTTTC+CGG | - | chr8_1:57764824-57764843 | None:intergenic | 45.0% | |
| CAGGCAACAATAGTAGTAGG+AGG | + | chr8_1:57764992-57765011 | Msa1203490:intron | 45.0% | |
| TTGCACTTTCCTGTGGAAGT+TGG | + | chr8_1:57765320-57765339 | Msa1203490:CDS | 45.0% | |
| ACTCACTTTCCCTTCCTTCA+AGG | - | chr8_1:57766443-57766462 | None:intergenic | 45.0% | |
| !! | CATATTTATTAATATTATTA+AGG | - | chr8_1:57761554-57761573 | None:intergenic | 5.0% |
| GGAAAGCAGGAGAAGATGGA+AGG | + | chr8_1:57762362-57762381 | Msa1203490:intron | 50.0% | |
| AAGCAGGAGAAGATGGAAGG+AGG | + | chr8_1:57762365-57762384 | Msa1203490:intron | 50.0% | |
| AGGAGAAGATGGAAGGAGGA+GGG | + | chr8_1:57762369-57762388 | Msa1203490:intron | 50.0% | |
| AGACGAGGCAAAGATCCCAA+AGG | - | chr8_1:57762618-57762637 | None:intergenic | 50.0% | |
| ! | GGCAGTGTTGGAAGAAGAAG+TGG | + | chr8_1:57763080-57763099 | Msa1203490:CDS | 50.0% |
| CTGGCAAGAGAATTCTGTGG+TGG | - | chr8_1:57763294-57763313 | None:intergenic | 50.0% | |
| CACTGGACACGCCTAATCTA+AGG | + | chr8_1:57763606-57763625 | Msa1203490:intron | 50.0% | |
| GCACGGACACTCCTTAGATT+AGG | - | chr8_1:57763620-57763639 | None:intergenic | 50.0% | |
| TGACACTGACACGCAGACAT+CGG | + | chr8_1:57764160-57764179 | Msa1203490:intron | 50.0% | |
| ! | ATAACCAGACGTGTCGGTGT+TGG | + | chr8_1:57764213-57764232 | Msa1203490:intron | 50.0% |
| ACATGGCATACCGGAAAGTC+CGG | + | chr8_1:57764811-57764830 | Msa1203490:CDS | 50.0% | |
| CATACCGGAAAGTCCGGAAA+TGG | + | chr8_1:57764817-57764836 | Msa1203490:CDS | 50.0% | |
| AGGTGAAGACCAACTTCCAC+AGG | - | chr8_1:57765332-57765351 | None:intergenic | 50.0% | |
| ATTGAGACGTGGCAGTGATG+TGG | - | chr8_1:57765595-57765614 | None:intergenic | 50.0% | |
| ACATCACTGCCACGTCTCAA+TGG | + | chr8_1:57765594-57765613 | Msa1203490:intron | 50.0% | |
| ! | CTAGAGATGTGGTAGCGATG+TGG | + | chr8_1:57765735-57765754 | Msa1203490:intron | 50.0% |
| CAGGAGAAGATGGAAGGAGG+AGG | + | chr8_1:57762368-57762387 | Msa1203490:intron | 55.0% | |
| ATGGAAGGAGGAGGGAGCAA+AGG | + | chr8_1:57762377-57762396 | Msa1203490:CDS | 55.0% | |
| GGAAGATAAGGCGGAAGACG+AGG | - | chr8_1:57762633-57762652 | None:intergenic | 55.0% | |
| TCTAGCTGAGGTGGCAGTGT+TGG | + | chr8_1:57763068-57763087 | Msa1203490:CDS | 55.0% | |
| TTATGTGTCGGGGTCGACAC+TGG | + | chr8_1:57763589-57763608 | Msa1203490:intron | 55.0% | |
| GCAGTGATGTGGAGTTCACG+TGG | - | chr8_1:57765584-57765603 | None:intergenic | 55.0% | |
| GTAGCGATGTGGAGTCTGCA+CGG | + | chr8_1:57765746-57765765 | Msa1203490:intron | 55.0% | |
| GTGTCCAACACCGACACGTC+TGG | - | chr8_1:57764220-57764239 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 57761376 | 57766758 | 57761376 | ID=Msa1203490;Name=Msa1203490 |
| chr8_1 | mRNA | 57761376 | 57766758 | 57761376 | ID=Msa1203490-mRNA-1;Parent=Msa1203490;Name=Msa1203490-mRNA-1;_AED=0.12;_eAED=0.12;_QI=244|1|1|1|0.8|0.81|11|231|597 |
| chr8_1 | exon | 57761376 | 57761572 | 57761376 | ID=Msa1203490-mRNA-1:exon:18849;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57761819 | 57761904 | 57761819 | ID=Msa1203490-mRNA-1:exon:18850;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57762371 | 57762454 | 57762371 | ID=Msa1203490-mRNA-1:exon:18851;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57762543 | 57762659 | 57762543 | ID=Msa1203490-mRNA-1:exon:18852;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57763057 | 57763578 | 57763057 | ID=Msa1203490-mRNA-1:exon:18853;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57763728 | 57764095 | 57763728 | ID=Msa1203490-mRNA-1:exon:18854;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57764338 | 57764437 | 57764338 | ID=Msa1203490-mRNA-1:exon:18855;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57764800 | 57764859 | 57764800 | ID=Msa1203490-mRNA-1:exon:18856;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57764995 | 57765078 | 57764995 | ID=Msa1203490-mRNA-1:exon:18857;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57765238 | 57765354 | 57765238 | ID=Msa1203490-mRNA-1:exon:18858;Parent=Msa1203490-mRNA-1 |
| chr8_1 | exon | 57766225 | 57766758 | 57766225 | ID=Msa1203490-mRNA-1:exon:18859;Parent=Msa1203490-mRNA-1 |
| chr8_1 | five_prime_UTR | 57761376 | 57761572 | 57761376 | ID=Msa1203490-mRNA-1:five_prime_utr;Parent=Msa1203490-mRNA-1 |
| chr8_1 | five_prime_UTR | 57761819 | 57761865 | 57761819 | ID=Msa1203490-mRNA-1:five_prime_utr;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57761866 | 57761904 | 57761866 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57762371 | 57762454 | 57762371 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57762543 | 57762659 | 57762543 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57763057 | 57763578 | 57763057 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57763728 | 57764095 | 57763728 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57764338 | 57764437 | 57764338 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57764800 | 57764859 | 57764800 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57764995 | 57765078 | 57764995 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57765238 | 57765354 | 57765238 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | CDS | 57766225 | 57766527 | 57766225 | ID=Msa1203490-mRNA-1:cds;Parent=Msa1203490-mRNA-1 |
| chr8_1 | three_prime_UTR | 57766528 | 57766758 | 57766528 | ID=Msa1203490-mRNA-1:three_prime_utr;Parent=Msa1203490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
