Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328350 | XP_003629592.1 | 97.931 | 580 | 12 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328350 | G7LGE4 | 97.931 | 580 | 12 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1255900 | Msa1328350 | 0.870168 | 1.789331e-66 | -8.615850e-47 |
| Msa1296120 | Msa1328350 | 0.952156 | 4.439304e-110 | -8.615850e-47 |
| Msa1328320 | Msa1328350 | 0.970588 | 7.595094e-132 | -8.615850e-47 |
| Msa1040120 | Msa1328350 | 0.809832 | 1.557266e-50 | -8.615850e-47 |
| Msa1128160 | Msa1328350 | 0.805820 | 1.110016e-49 | -8.615850e-47 |
| Msa1165360 | Msa1328350 | 0.804369 | 2.233090e-49 | -8.615850e-47 |
| Msa1203490 | Msa1328350 | 0.950536 | 1.343912e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328350 | MtrunA17_Chr8g0374741 | 97.931 | 580 | 12 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1166 |
| Msa1328350 | MtrunA17_Chr5g0402501 | 67.350 | 585 | 128 | 9 | 1 | 579 | 1 | 528 | 0.0 | 709 |
| Msa1328350 | MtrunA17_Chr1g0153951 | 49.466 | 562 | 247 | 7 | 23 | 583 | 8 | 533 | 1.99e-153 | 451 |
| Msa1328350 | MtrunA17_Chr3g0133631 | 47.887 | 568 | 230 | 12 | 23 | 583 | 48 | 556 | 1.22e-151 | 447 |
| Msa1328350 | MtrunA17_Chr4g0028651 | 33.857 | 573 | 322 | 16 | 33 | 572 | 121 | 669 | 1.87e-77 | 259 |
| Msa1328350 | MtrunA17_Chr5g0435281 | 41.077 | 297 | 151 | 4 | 284 | 559 | 178 | 471 | 4.04e-67 | 226 |
| Msa1328350 | MtrunA17_Chr8g0373901 | 26.335 | 562 | 357 | 9 | 37 | 569 | 66 | 599 | 5.40e-43 | 163 |
| Msa1328350 | MtrunA17_Chr5g0403231 | 28.952 | 563 | 324 | 16 | 40 | 569 | 77 | 596 | 2.44e-42 | 161 |
| Msa1328350 | MtrunA17_Chr5g0399331 | 26.786 | 392 | 250 | 9 | 202 | 571 | 175 | 551 | 4.63e-38 | 148 |
| Msa1328350 | MtrunA17_Chr4g0034351 | 31.373 | 306 | 174 | 8 | 264 | 545 | 269 | 562 | 3.26e-33 | 134 |
| Msa1328350 | MtrunA17_Chr3g0115381 | 33.505 | 194 | 116 | 6 | 358 | 545 | 528 | 714 | 1.50e-19 | 92.8 |
| Msa1328350 | MtrunA17_Chr1g0163291 | 29.050 | 179 | 111 | 7 | 383 | 554 | 396 | 565 | 1.24e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328350 | AT4G37080.2 | 59.024 | 615 | 191 | 12 | 1 | 578 | 1 | 591 | 0.0 | 625 |
| Msa1328350 | AT4G37080.3 | 59.024 | 615 | 191 | 12 | 1 | 578 | 1 | 591 | 0.0 | 625 |
| Msa1328350 | AT4G37080.1 | 60.781 | 589 | 184 | 11 | 13 | 578 | 14 | 578 | 0.0 | 624 |
| Msa1328350 | AT4G37080.4 | 59.136 | 509 | 161 | 11 | 13 | 498 | 27 | 511 | 7.96e-171 | 495 |
| Msa1328350 | AT5G42690.5 | 49.298 | 570 | 206 | 12 | 16 | 579 | 2 | 494 | 8.85e-149 | 439 |
| Msa1328350 | AT5G42690.2 | 48.870 | 575 | 214 | 11 | 7 | 579 | 25 | 521 | 6.34e-148 | 437 |
| Msa1328350 | AT5G42690.4 | 48.870 | 575 | 214 | 11 | 7 | 579 | 25 | 521 | 6.34e-148 | 437 |
| Msa1328350 | AT5G42690.1 | 49.043 | 575 | 212 | 12 | 7 | 579 | 25 | 520 | 4.00e-147 | 435 |
| Msa1328350 | AT5G42690.3 | 49.444 | 540 | 194 | 10 | 42 | 579 | 7 | 469 | 8.20e-142 | 420 |
| Msa1328350 | AT2G39690.2 | 40.317 | 315 | 161 | 7 | 284 | 580 | 96 | 401 | 5.45e-70 | 232 |
| Msa1328350 | AT2G39690.5 | 40.317 | 315 | 161 | 7 | 284 | 580 | 203 | 508 | 3.44e-69 | 233 |
| Msa1328350 | AT2G39690.4 | 40.317 | 315 | 161 | 7 | 284 | 580 | 177 | 482 | 3.58e-69 | 232 |
| Msa1328350 | AT2G39690.1 | 40.764 | 314 | 160 | 8 | 284 | 580 | 203 | 507 | 4.14e-69 | 233 |
| Msa1328350 | AT2G39690.8 | 40.764 | 314 | 160 | 8 | 284 | 580 | 177 | 481 | 4.31e-69 | 232 |
| Msa1328350 | AT3G12540.2 | 39.577 | 331 | 179 | 7 | 264 | 580 | 157 | 480 | 1.73e-65 | 223 |
| Msa1328350 | AT3G12540.1 | 39.506 | 324 | 177 | 6 | 264 | 575 | 224 | 540 | 2.40e-65 | 224 |
| Msa1328350 | AT5G60720.1 | 29.525 | 569 | 299 | 18 | 78 | 571 | 122 | 663 | 6.60e-57 | 203 |
| Msa1328350 | AT1G16750.1 | 33.333 | 330 | 175 | 8 | 285 | 574 | 178 | 502 | 3.76e-46 | 171 |
| Msa1328350 | AT2G39690.6 | 39.827 | 231 | 114 | 6 | 284 | 498 | 203 | 424 | 5.06e-43 | 160 |
| Msa1328350 | AT2G39690.7 | 40.435 | 230 | 113 | 7 | 284 | 498 | 203 | 423 | 5.32e-43 | 160 |
| Msa1328350 | AT3G13000.1 | 32.344 | 337 | 182 | 8 | 284 | 579 | 197 | 528 | 1.43e-42 | 161 |
| Msa1328350 | AT3G13000.3 | 32.344 | 337 | 182 | 8 | 284 | 579 | 226 | 557 | 1.59e-42 | 161 |
| Msa1328350 | AT3G13000.2 | 32.344 | 337 | 182 | 8 | 284 | 579 | 226 | 557 | 1.59e-42 | 161 |
| Msa1328350 | AT5G47380.4 | 29.739 | 306 | 187 | 7 | 280 | 573 | 274 | 563 | 2.23e-38 | 149 |
| Msa1328350 | AT5G47380.5 | 29.739 | 306 | 187 | 7 | 280 | 573 | 218 | 507 | 2.35e-38 | 149 |
| Msa1328350 | AT5G47380.1 | 29.739 | 306 | 187 | 7 | 280 | 573 | 274 | 563 | 2.72e-38 | 149 |
| Msa1328350 | AT2G23700.1 | 29.429 | 350 | 206 | 9 | 259 | 581 | 355 | 690 | 1.04e-36 | 145 |
| Msa1328350 | AT3G18900.5 | 32.890 | 301 | 173 | 5 | 277 | 569 | 223 | 502 | 1.38e-34 | 137 |
| Msa1328350 | AT3G18900.4 | 32.890 | 301 | 173 | 5 | 277 | 569 | 228 | 507 | 1.49e-34 | 137 |
| Msa1328350 | AT3G18900.6 | 32.890 | 301 | 173 | 5 | 277 | 569 | 147 | 426 | 1.87e-34 | 136 |
| Msa1328350 | AT3G18900.3 | 32.890 | 301 | 173 | 5 | 277 | 569 | 147 | 426 | 1.87e-34 | 136 |
| Msa1328350 | AT5G66600.14 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328350 | AT5G66600.1 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328350 | AT5G66600.4 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328350 | AT5G66600.9 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328350 | AT5G66600.3 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328350 | AT5G66600.2 | 29.712 | 313 | 191 | 5 | 280 | 569 | 258 | 564 | 1.38e-33 | 135 |
| Msa1328350 | AT5G66600.7 | 29.712 | 313 | 191 | 5 | 280 | 569 | 224 | 530 | 1.92e-33 | 135 |
| Msa1328350 | AT2G39690.3 | 38.462 | 182 | 97 | 4 | 284 | 453 | 177 | 355 | 1.13e-32 | 129 |
| Msa1328350 | AT1G76620.1 | 27.301 | 326 | 196 | 9 | 284 | 581 | 193 | 505 | 1.75e-31 | 129 |
| Msa1328350 | AT1G43020.1 | 32.110 | 218 | 135 | 5 | 372 | 581 | 211 | 423 | 3.99e-27 | 114 |
| Msa1328350 | AT1G21060.2 | 27.541 | 305 | 193 | 6 | 282 | 573 | 185 | 474 | 1.93e-24 | 107 |
| Msa1328350 | AT1G21060.1 | 27.541 | 305 | 193 | 6 | 282 | 573 | 197 | 486 | 2.67e-24 | 107 |
| Msa1328350 | AT5G47380.2 | 29.787 | 235 | 137 | 7 | 279 | 501 | 273 | 491 | 1.00e-22 | 102 |
| Msa1328350 | AT1G16750.2 | 31.553 | 206 | 105 | 5 | 285 | 455 | 178 | 382 | 2.23e-22 | 100 |
| Msa1328350 | AT5G47380.3 | 30.000 | 230 | 133 | 7 | 280 | 497 | 274 | 487 | 3.79e-22 | 100 |
| Msa1328350 | AT5G66600.12 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 5.18e-22 | 100 |
| Msa1328350 | AT5G66600.11 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 5.18e-22 | 100 |
| Msa1328350 | AT5G66600.6 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 5.18e-22 | 100 |
| Msa1328350 | AT5G66600.13 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 5.18e-22 | 100 |
| Msa1328350 | AT4G08550.1 | 28.571 | 217 | 146 | 5 | 358 | 570 | 408 | 619 | 6.76e-18 | 87.8 |
| Msa1328350 | AT4G08550.2 | 28.571 | 217 | 146 | 5 | 358 | 570 | 462 | 673 | 9.76e-18 | 87.4 |
| Msa1328350 | AT3G18900.1 | 30.435 | 230 | 131 | 5 | 277 | 498 | 228 | 436 | 1.40e-17 | 86.3 |
| Msa1328350 | AT5G66600.10 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.48e-16 | 82.0 |
| Msa1328350 | AT5G66600.8 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.48e-16 | 82.0 |
| Msa1328350 | AT5G66600.5 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.48e-16 | 82.0 |
| Msa1328350 | AT5G66600.15 | 28.877 | 187 | 115 | 2 | 280 | 450 | 224 | 408 | 4.12e-16 | 81.6 |
| Msa1328350 | AT3G11920.1 | 32.749 | 171 | 111 | 4 | 386 | 554 | 426 | 594 | 1.36e-15 | 80.5 |
| Msa1328350 | AT3G18900.2 | 32.203 | 177 | 96 | 4 | 277 | 450 | 228 | 383 | 8.55e-15 | 77.0 |
| Msa1328350 | AT1G76620.2 | 24.896 | 241 | 145 | 7 | 284 | 498 | 193 | 423 | 3.98e-13 | 72.0 |
| Msa1328350 | AT1G43020.3 | 32.353 | 136 | 83 | 4 | 372 | 501 | 211 | 343 | 4.70e-13 | 71.2 |
Find 110 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTTATTAATATTATTA+AGG | 0.143285 | 8_4:+46072338 | None:intergenic |
| TTCTTATTTCATCAGGTAAT+TGG | 0.190698 | 8_4:+46067487 | None:intergenic |
| TTGAGTGGAGATTTCTTTAA+AGG | 0.208758 | 8_4:+46070376 | None:intergenic |
| GTGAAAGCAAGAAGCATATT+TGG | 0.230491 | 8_4:-46068621 | Msa1328350:CDS |
| AATTACTTCTCATGTGGTTT+TGG | 0.235218 | 8_4:+46070683 | None:intergenic |
| AAAGGACCTTGATTCTTTAT+TGG | 0.238431 | 8_4:-46067523 | Msa1328350:CDS |
| AGATCTTCTGAAACTCTATT+TGG | 0.238770 | 8_4:+46070074 | None:intergenic |
| TGGACCAACTTCTCTTGTTT+TGG | 0.239386 | 8_4:+46069899 | None:intergenic |
| ACAACCATTTCCGGACTTTC+CGG | 0.243264 | 8_4:+46069068 | None:intergenic |
| AAGAATTTATGTGAAATTAA+AGG | 0.244278 | 8_4:-46069873 | Msa1328350:CDS |
| ATTTCACATAAATTCTTATA+TGG | 0.245460 | 8_4:+46069879 | None:intergenic |
| TTGGAAGTGTACTTCGAATA+TGG | 0.263651 | 8_4:-46067220 | Msa1328350:three_prime_UTR |
| AATAATTACAGTGGGAATAA+TGG | 0.270800 | 8_4:-46070532 | Msa1328350:CDS |
| AAACATTGCATTTGTTGTTC+TGG | 0.321552 | 8_4:+46069833 | None:intergenic |
| ATTAATGCTACAACCATTTC+CGG | 0.323435 | 8_4:+46069059 | None:intergenic |
| CTTTCTGCTAGAAGCACTTC+TGG | 0.331481 | 8_4:+46070579 | None:intergenic |
| TCTAACATATTTGTGAGAAT+TGG | 0.347512 | 8_4:-46070038 | Msa1328350:CDS |
| ATATTTATTAATATTATTAA+GGG | 0.356914 | 8_4:+46072339 | None:intergenic |
| AAGAGCATTTACAAGACCTT+TGG | 0.361369 | 8_4:-46071290 | Msa1328350:CDS |
| CTAATAAATCACTTATTCAT+TGG | 0.361785 | 8_4:+46067368 | None:intergenic |
| ATAATTACAGTGGGAATAAT+GGG | 0.374737 | 8_4:-46070531 | Msa1328350:CDS |
| CATGGATCAATTAAAGTTGC+AGG | 0.385031 | 8_4:-46070332 | Msa1328350:intron |
| GCTTGGTTTCTTATTTCATC+AGG | 0.387730 | 8_4:+46067480 | None:intergenic |
| CTTCAAGGCATTTAACTGCT+TGG | 0.390658 | 8_4:+46067463 | None:intergenic |
| ACTCACTTTCCCTTCCTTCA+AGG | 0.391301 | 8_4:+46067448 | None:intergenic |
| AGAGCATTTACAAGACCTTT+GGG | 0.393492 | 8_4:-46071289 | Msa1328350:CDS |
| ATTATCTGCTGGTGAATTTG+AGG | 0.414829 | 8_4:+46070121 | None:intergenic |
| ACTTGCTTCTTTGAACTTGA+AGG | 0.419293 | 8_4:-46069536 | Msa1328350:CDS |
| GATTATTTACAAGCTTCAAT+TGG | 0.420391 | 8_4:-46067609 | Msa1328350:CDS |
| CAAGCAGTTAAATGCCTTGA+AGG | 0.420884 | 8_4:-46067462 | Msa1328350:CDS |
| GATACTAATTCCCAAGTTGT+TGG | 0.421968 | 8_4:-46067568 | Msa1328350:CDS |
| ACCTTGATTCTTTATTGGAC+TGG | 0.422533 | 8_4:-46067518 | Msa1328350:CDS |
| AATATTATTAAGGGTGATGT+TGG | 0.424785 | 8_4:+46072348 | None:intergenic |
| AAAGTGAGTCTCTTTCAAAA+TGG | 0.432212 | 8_4:-46067434 | Msa1328350:CDS |
| ATTGTGGACTTACAAACTTA+AGG | 0.436584 | 8_4:+46068820 | None:intergenic |
| GTAAAATTCAGGTACCTACT+TGG | 0.436814 | 8_4:-46069562 | Msa1328350:intron |
| ATGTGGAAAGCAGGAGAAGA+TGG | 0.444562 | 8_4:-46071531 | Msa1328350:intron |
| GGAAAGTGCAAATGTTACTA+AGG | 0.447874 | 8_4:+46068581 | None:intergenic |
| ACTTACAAACTTAAGGTGAT+AGG | 0.449376 | 8_4:+46068827 | None:intergenic |
| TAATTCCCAAGTTGTTGGAT+TGG | 0.451039 | 8_4:-46067563 | Msa1328350:CDS |
| GATTCTGAACAGATATCATA+AGG | 0.452530 | 8_4:+46069921 | None:intergenic |
| CTTGCTTCTTTGAACTTGAA+GGG | 0.457672 | 8_4:-46069535 | Msa1328350:CDS |
| CTTACAAACTTAAGGTGATA+GGG | 0.461257 | 8_4:+46068828 | None:intergenic |
| TCTGACACTTTATTATCTGC+TGG | 0.461649 | 8_4:+46070110 | None:intergenic |
| CAGGAGAAGATGGAAGGAGG+AGG | 0.462824 | 8_4:-46071521 | Msa1328350:CDS |
| CTGTAATTATTGACAGTGTC+AGG | 0.470070 | 8_4:+46070544 | None:intergenic |
| CTGCAACTTTAATTGATCCA+TGG | 0.472815 | 8_4:+46070333 | None:intergenic |
| AACCTGAAACTAAAATCATA+AGG | 0.475747 | 8_4:+46067400 | None:intergenic |
| AAGAAGCAAGTTTCCCAAGT+AGG | 0.475798 | 8_4:+46069548 | None:intergenic |
| TTTGGTTGCCTTAGCTGGAA+TGG | 0.476109 | 8_4:-46070175 | Msa1328350:intron |
| ACATGGCATACCGGAAAGTC+CGG | 0.480935 | 8_4:-46069078 | Msa1328350:CDS |
| ATGGAAGGAGGAGGGAGCAA+AGG | 0.484168 | 8_4:-46071512 | Msa1328350:CDS |
| CATACCGGAAAGTCCGGAAA+TGG | 0.487177 | 8_4:-46069072 | Msa1328350:CDS |
| CTAACATATGGAGGAAGATA+AGG | 0.489236 | 8_4:+46071247 | None:intergenic |
| GAATCCAAAACAAGAGAAGT+TGG | 0.490044 | 8_4:-46069903 | Msa1328350:CDS |
| TCTAGCTGAGGTGGCAGTGT+TGG | 0.492182 | 8_4:-46070821 | Msa1328350:CDS |
| TTTCAGGCAACAATAGTAGT+AGG | 0.492409 | 8_4:-46068900 | Msa1328350:intron |
| CAGTTAAATGCCTTGAAGGA+AGG | 0.493380 | 8_4:-46067458 | Msa1328350:CDS |
| TTGCACTTTCCTGTGGAAGT+TGG | 0.498705 | 8_4:-46068569 | Msa1328350:CDS |
| GGTTGTAGCATTAATGCAAA+AGG | 0.498874 | 8_4:-46069051 | Msa1328350:intron |
| AAATAAGACCCAGAAGTTGA+AGG | 0.499068 | 8_4:+46069981 | None:intergenic |
| AGCAAGAAGCATATTTGGAC+TGG | 0.499364 | 8_4:-46068616 | Msa1328350:CDS |
| GGCAGTGTTGGAAGAAGAAG+TGG | 0.508158 | 8_4:-46070809 | Msa1328350:CDS |
| TGTTGGAAGAAGAAGTGGTT+AGG | 0.511515 | 8_4:-46070804 | Msa1328350:CDS |
| GGAGATTATCAGAACATGAA+AGG | 0.515426 | 8_4:-46070154 | Msa1328350:CDS |
| TAAATACCAATCCAACAACT+TGG | 0.518404 | 8_4:+46067557 | None:intergenic |
| CATCTATACAAGAAGAAGGA+AGG | 0.518813 | 8_4:-46070477 | Msa1328350:CDS |
| GAGATTATCAGAACATGAAA+GGG | 0.519637 | 8_4:-46070153 | Msa1328350:CDS |
| AGTTAAATGCCTTGAAGGAA+GGG | 0.523554 | 8_4:-46067457 | Msa1328350:CDS |
| TCCAGTCCAATAAAGAATCA+AGG | 0.524058 | 8_4:+46067517 | None:intergenic |
| ATCTATACAAGAAGAAGGAA+GGG | 0.524855 | 8_4:-46070476 | Msa1328350:CDS |
| TTCAGGTAGATAAGTTGAAG+AGG | 0.528029 | 8_4:-46071351 | Msa1328350:intron |
| TAAAATTCAGGTACCTACTT+GGG | 0.539959 | 8_4:-46069561 | Msa1328350:intron |
| GGAAAGCAGGAGAAGATGGA+AGG | 0.544627 | 8_4:-46071527 | Msa1328350:intron |
| GACATTGGAACTTCTAGCTG+AGG | 0.548247 | 8_4:-46070833 | Msa1328350:CDS |
| GCTTTGAATTACTTCTCATG+TGG | 0.555149 | 8_4:+46070677 | None:intergenic |
| AAGCAGGAGAAGATGGAAGG+AGG | 0.556298 | 8_4:-46071524 | Msa1328350:intron |
| ACTGAGAGAGTAGAAGAAGG+AGG | 0.559818 | 8_4:+46072424 | None:intergenic |
| TGAGCTGATTCATGTTTGAG+TGG | 0.563105 | 8_4:+46070361 | None:intergenic |
| TTCTCATCTATACAAGAAGA+AGG | 0.568329 | 8_4:-46070481 | Msa1328350:CDS |
| TGTGAGAATTGGTACATCCA+AGG | 0.569116 | 8_4:-46070027 | Msa1328350:CDS |
| CAAGTTGTGAATTTCAGACA+AGG | 0.573745 | 8_4:-46070772 | Msa1328350:CDS |
| TCTATACAAGAAGAAGGAAG+GGG | 0.575452 | 8_4:-46070475 | Msa1328350:CDS |
| GGAAGATAAGGCGGAAGACG+AGG | 0.581353 | 8_4:+46071259 | None:intergenic |
| AAGACTGAGAGAGTAGAAGA+AGG | 0.582005 | 8_4:+46072421 | None:intergenic |
| GTAACATTTGCACTTTCCTG+TGG | 0.584614 | 8_4:-46068576 | Msa1328350:CDS |
| GAAGCATATTTGGACTGGAA+TGG | 0.585611 | 8_4:-46068611 | Msa1328350:CDS |
| TGAATCAGCTCAGAAGTCCA+TGG | 0.591207 | 8_4:-46070350 | Msa1328350:CDS |
| GAAAGTGCAAATGTTACTAA+GGG | 0.594562 | 8_4:+46068582 | None:intergenic |
| AGGAGAAGATGGAAGGAGGA+GGG | 0.595319 | 8_4:-46071520 | Msa1328350:CDS |
| TGTTCTGGTGAGATCAACAT+TGG | 0.595419 | 8_4:+46069848 | None:intergenic |
| ATACTTAGAACATGGCATAC+CGG | 0.606507 | 8_4:-46069087 | Msa1328350:CDS |
| AAATACCAATCCAACAACTT+GGG | 0.609275 | 8_4:+46067558 | None:intergenic |
| ATTGGAACTTCTAGCTGAGG+TGG | 0.610303 | 8_4:-46070830 | Msa1328350:CDS |
| TAAGTGATTTATTAGTGTGG+TGG | 0.611464 | 8_4:-46067360 | Msa1328350:three_prime_UTR |
| CGATGACTTACTTCAATCTG+TGG | 0.611618 | 8_4:+46069805 | None:intergenic |
| TTACAAACTTAAGGTGATAG+GGG | 0.614980 | 8_4:+46068829 | None:intergenic |
| TTATTTCAGCCAATGTAGCA+AGG | 0.617147 | 8_4:-46069964 | Msa1328350:CDS |
| GGGTGAAGACCAACTTCCAC+AGG | 0.617768 | 8_4:+46068560 | None:intergenic |
| AGAGAGAGACTAACATATGG+AGG | 0.635286 | 8_4:+46071238 | None:intergenic |
| GACACTGTCAATAATTACAG+TGG | 0.635952 | 8_4:-46070541 | Msa1328350:CDS |
| ACACTGTCAATAATTACAGT+GGG | 0.639622 | 8_4:-46070540 | Msa1328350:CDS |
| AATTTAATTCAATGACAACA+AGG | 0.640125 | 8_4:-46070624 | Msa1328350:CDS |
| CTGGCAAGAGAATTCTGTGG+TGG | 0.650669 | 8_4:+46070598 | None:intergenic |
| TTGTAGGCATACTTAGAACA+TGG | 0.651116 | 8_4:-46069095 | Msa1328350:intron |
| CAGGCAACAATAGTAGTAGG+AGG | 0.658457 | 8_4:-46068897 | Msa1328350:CDS |
| ACATATGGAGGAAGATAAGG+CGG | 0.675886 | 8_4:+46071250 | None:intergenic |
| GAATAAGTGATTTATTAGTG+TGG | 0.688365 | 8_4:-46067363 | Msa1328350:three_prime_UTR |
| AGACGAGGCAAAGATCCCAA+AGG | 0.692046 | 8_4:+46071274 | None:intergenic |
| CTTCTGGCAAGAGAATTCTG+TGG | 0.743682 | 8_4:+46070595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATTAATATTATTAA+GGG | + | chr8_4:46067330-46067349 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTGGTTTAAATA+AGG | - | chr8_4:46071981-46072000 | Msa1328350:intron | 10.0% |
| !!! | AACATTATTTAATGTTTTTT+TGG | + | chr8_4:46072377-46072396 | None:intergenic | 10.0% |
| !! | AAAAAACATTAAATAATGTT+TGG | - | chr8_4:46072377-46072396 | Msa1328350:five_prime_UTR | 10.0% |
| !!! | TTTTAATATTTCTATGTTGT+TGG | - | chr8_4:46067754-46067773 | Msa1328350:intron | 15.0% |
| !!! | AATTTTGAAAAACTATGTTT+TGG | - | chr8_4:46067826-46067845 | Msa1328350:intron | 15.0% |
| !!! | TTTGTTTAATCTTTTTGTTT+TGG | - | chr8_4:46069473-46069492 | Msa1328350:intron | 15.0% |
| !! | ATTTCACATAAATTCTTATA+TGG | + | chr8_4:46069790-46069809 | None:intergenic | 15.0% |
| !! | AAGAATTTATGTGAAATTAA+AGG | - | chr8_4:46069793-46069812 | Msa1328350:intron | 15.0% |
| !! | TTATCATCATTAAGTTTATT+TGG | + | chr8_4:46070425-46070444 | None:intergenic | 15.0% |
| !! | AATAAACTTAATGATGATAA+AGG | - | chr8_4:46070425-46070444 | Msa1328350:CDS | 15.0% |
| !!! | GTTATCACTTTAAAATATTT+TGG | - | chr8_4:46070540-46070559 | Msa1328350:CDS | 15.0% |
| !! | AAACTATAAAATCAAAAGAA+AGG | + | chr8_4:46070877-46070896 | None:intergenic | 15.0% |
| !! | GAAATAAAGATAGAAATTAA+GGG | + | chr8_4:46070986-46071005 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTACTTAAATCAA+TGG | - | chr8_4:46071165-46071184 | Msa1328350:intron | 15.0% |
| !!! | AATTAAATTTTGAGTGAAAT+AGG | + | chr8_4:46071713-46071732 | None:intergenic | 15.0% |
| !! | AAATGAAATGATTATTGTAG+CGG | + | chr8_4:46067426-46067445 | None:intergenic | 20.0% |
| !!! | AAAGAACAAGATTTTAGATT+TGG | + | chr8_4:46068009-46068028 | None:intergenic | 20.0% |
| !! | CGAAGAATTTAGTATATATT+TGG | - | chr8_4:46068459-46068478 | Msa1328350:intron | 20.0% |
| !!! | TTTTAGCTTCAATAAAATCA+CGG | + | chr8_4:46068648-46068667 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGAAGTTGATTTT+TGG | - | chr8_4:46068778-46068797 | Msa1328350:intron | 20.0% |
| !! | AATTTAATTCAATGACAACA+AGG | - | chr8_4:46069042-46069061 | Msa1328350:intron | 20.0% |
| !! | TGTCAGTATAATTACAATAT+TGG | + | chr8_4:46069922-46069941 | None:intergenic | 20.0% |
| !!! | TAATCTTTTGTGTAAAATTC+AGG | - | chr8_4:46070093-46070112 | Msa1328350:CDS | 20.0% |
| !!! | TATTTTGGTTTTCATATTGT+AGG | - | chr8_4:46070555-46070574 | Msa1328350:CDS | 20.0% |
| !! | GGAAATAAAGATAGAAATTA+AGG | + | chr8_4:46070987-46071006 | None:intergenic | 20.0% |
| !!! | ACTTTTGGTATAATTATGTT+TGG | - | chr8_4:46071399-46071418 | Msa1328350:intron | 20.0% |
| !!! | AAGTTATTTTGACTTTACTT+CGG | + | chr8_4:46071454-46071473 | None:intergenic | 20.0% |
| !!! | GTTTTCCATTTTTTACTTTT+AGG | - | chr8_4:46071746-46071765 | Msa1328350:intron | 20.0% |
| !! | TTGATCCTAAAAGTAAAAAA+TGG | + | chr8_4:46071754-46071773 | None:intergenic | 20.0% |
| !! | AATAAATATGGATTTGTGTT+AGG | + | chr8_4:46071885-46071904 | None:intergenic | 20.0% |
| !! | ATTAAATTATATTGCACTGA+AGG | - | chr8_4:46071951-46071970 | Msa1328350:intron | 20.0% |
| !!! | AAGGAGCAATATTTTTTTTT+TGG | - | chr8_4:46071970-46071989 | Msa1328350:intron | 20.0% |
| !! | CTAATAAATCACTTATTCAT+TGG | + | chr8_4:46072301-46072320 | None:intergenic | 20.0% |
| !!! | TGGATATTTTTTTTGTACAA+TGG | - | chr8_4:46072326-46072345 | Msa1328350:intron | 20.0% |
| !!! | TGAAAAATCACATGTATTTT+TGG | - | chr8_4:46072427-46072446 | Msa1328350:five_prime_UTR | 20.0% |
| ! | AATATTATTAAGGGTGATGT+TGG | + | chr8_4:46067321-46067340 | None:intergenic | 25.0% |
| ! | AATGAAATGATTATTGTAGC+GGG | + | chr8_4:46067425-46067444 | None:intergenic | 25.0% |
| !! | AAGAAAAGAGCTACTTTAAT+AGG | - | chr8_4:46067886-46067905 | Msa1328350:intron | 25.0% |
| !!! | GTTTTGTTTATTGTTGAATG+TGG | - | chr8_4:46068118-46068137 | Msa1328350:intron | 25.0% |
| !! | AAATGTAGCTTTTATCTATG+TGG | - | chr8_4:46068667-46068686 | Msa1328350:intron | 25.0% |
| !!! | TGTGTTATTGTTTTAGACAT+TGG | - | chr8_4:46068818-46068837 | Msa1328350:intron | 25.0% |
| !! | AATAGGGTCATTCAAATTTT+CGG | + | chr8_4:46068961-46068980 | None:intergenic | 25.0% |
| ! | AATAATTACAGTGGGAATAA+TGG | - | chr8_4:46069134-46069153 | Msa1328350:intron | 25.0% |
| ! | ATAATTACAGTGGGAATAAT+GGG | - | chr8_4:46069135-46069154 | Msa1328350:intron | 25.0% |
| !! | AGTTTAGATATTTTCTTCAC+TGG | + | chr8_4:46069263-46069282 | None:intergenic | 25.0% |
| !!! | CTATTTTAAACTATGAAGCA+CGG | + | chr8_4:46069414-46069433 | None:intergenic | 25.0% |
| ! | TCTAACATATTTGTGAGAAT+TGG | - | chr8_4:46069628-46069647 | Msa1328350:intron | 25.0% |
| ! | TCATCATTAAGTTTATTTGG+CGG | + | chr8_4:46070422-46070441 | None:intergenic | 25.0% |
| ! | TTTAAAAAAACCGAACCAAA+TGG | + | chr8_4:46070476-46070495 | None:intergenic | 25.0% |
| ! | ATTGACCTATTACAATTTCA+GGG | + | chr8_4:46071276-46071295 | None:intergenic | 25.0% |
| ! | TATGTTTGGTAAAAAAACCT+AGG | - | chr8_4:46071413-46071432 | Msa1328350:intron | 25.0% |
| !! | TTGTGTGTGATAATTTTGTT+GGG | + | chr8_4:46071480-46071499 | None:intergenic | 25.0% |
| !! | ATTGTGTGTGATAATTTTGT+TGG | + | chr8_4:46071481-46071500 | None:intergenic | 25.0% |
| ! | TTGCTAATTCGTAAAATTCA+AGG | - | chr8_4:46071642-46071661 | Msa1328350:intron | 25.0% |
| ! | TAATTCGTAAAATTCAAGGA+TGG | - | chr8_4:46071646-46071665 | Msa1328350:intron | 25.0% |
| !!! | TTTTTGGTTTAAATAAGGTG+AGG | - | chr8_4:46071986-46072005 | Msa1328350:intron | 25.0% |
| !!! | TTTTGGTTTAAATAAGGTGA+GGG | - | chr8_4:46071987-46072006 | Msa1328350:intron | 25.0% |
| ! | GATTATTTACAAGCTTCAAT+TGG | - | chr8_4:46072057-46072076 | Msa1328350:five_prime_UTR | 25.0% |
| !! | GTATTTACTAGATTTTGCAA+AGG | - | chr8_4:46072125-46072144 | Msa1328350:intron | 25.0% |
| !! | TTCTTATTTCATCAGGTAAT+TGG | + | chr8_4:46072182-46072201 | None:intergenic | 25.0% |
| ! | AACCTGAAACTAAAATCATA+AGG | + | chr8_4:46072269-46072288 | None:intergenic | 25.0% |
| ! | GAATAAGTGATTTATTAGTG+TGG | - | chr8_4:46072303-46072322 | Msa1328350:intron | 25.0% |
| !!! | TTTTTCAGAAATGTGTCATA+GGG | + | chr8_4:46072414-46072433 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGAAATGTGTCAT+AGG | + | chr8_4:46072415-46072434 | None:intergenic | 25.0% |
| ! | CTGAAACACTTTTCTTTTCT+TGG | - | chr8_4:46067195-46067214 | Msa1328350:three_prime_UTR | 30.0% |
| ! | AACCTAGCATTTTTCTTTTC+TGG | - | chr8_4:46067374-46067393 | Msa1328350:three_prime_UTR | 30.0% |
| ! | ACCTAGCATTTTTCTTTTCT+GGG | - | chr8_4:46067375-46067394 | Msa1328350:three_prime_UTR | 30.0% |
| !! | CATTGTTTTCTGAGAAAAAG+TGG | - | chr8_4:46067612-46067631 | Msa1328350:CDS | 30.0% |
| ATTTCTATGTTGTTGGAAAG+TGG | - | chr8_4:46067761-46067780 | Msa1328350:intron | 30.0% | |
| TACTTTAATAGGTACAAGCA+TGG | - | chr8_4:46067897-46067916 | Msa1328350:intron | 30.0% | |
| ATAGTAATTATGAAGCCTCA+TGG | - | chr8_4:46067948-46067967 | Msa1328350:intron | 30.0% | |
| !!! | TAGTGATGTTTTGAAAGCTT+TGG | - | chr8_4:46068291-46068310 | Msa1328350:intron | 30.0% |
| ! | AATTACTTCTCATGTGGTTT+TGG | + | chr8_4:46068986-46069005 | None:intergenic | 30.0% |
| ACACTGTCAATAATTACAGT+GGG | - | chr8_4:46069126-46069145 | Msa1328350:intron | 30.0% | |
| TTCTCATCTATACAAGAAGA+AGG | - | chr8_4:46069185-46069204 | Msa1328350:intron | 30.0% | |
| ATCTATACAAGAAGAAGGAA+GGG | - | chr8_4:46069190-46069209 | Msa1328350:intron | 30.0% | |
| TTGAGTGGAGATTTCTTTAA+AGG | + | chr8_4:46069293-46069312 | None:intergenic | 30.0% | |
| AGGTAATTACACTTATGTGT+CGG | - | chr8_4:46069354-46069373 | Msa1328350:intron | 30.0% | |
| GAGATTATCAGAACATGAAA+GGG | - | chr8_4:46069513-46069532 | Msa1328350:CDS | 30.0% | |
| !! | AGATCTTCTGAAACTCTATT+TGG | + | chr8_4:46069595-46069614 | None:intergenic | 30.0% |
| TACATCCAAGGAAAAATTTG+TGG | - | chr8_4:46069651-46069670 | Msa1328350:intron | 30.0% | |
| ! | TGATTCCACAAATTTTTCCT+TGG | + | chr8_4:46069659-46069678 | None:intergenic | 30.0% |
| GATTCTGAACAGATATCATA+AGG | + | chr8_4:46069748-46069767 | None:intergenic | 30.0% | |
| !! | AAACATTGCATTTGTTGTTC+TGG | + | chr8_4:46069836-46069855 | None:intergenic | 30.0% |
| TAAAATTCAGGTACCTACTT+GGG | - | chr8_4:46070105-46070124 | Msa1328350:CDS | 30.0% | |
| ! | AGAATGCAAGTTTTTCTTGA+TGG | + | chr8_4:46070163-46070182 | None:intergenic | 30.0% |
| ATCAAGAAAAACTTGCATTC+TGG | - | chr8_4:46070162-46070181 | Msa1328350:CDS | 30.0% | |
| ATTAATGCTACAACCATTTC+CGG | + | chr8_4:46070610-46070629 | None:intergenic | 30.0% | |
| TTACAAACTTAAGGTGATAG+GGG | + | chr8_4:46070840-46070859 | None:intergenic | 30.0% | |
| CTTACAAACTTAAGGTGATA+GGG | + | chr8_4:46070841-46070860 | None:intergenic | 30.0% | |
| ACTTACAAACTTAAGGTGAT+AGG | + | chr8_4:46070842-46070861 | None:intergenic | 30.0% | |
| ATTGTGGACTTACAAACTTA+AGG | + | chr8_4:46070849-46070868 | None:intergenic | 30.0% | |
| CAAAAGAAAGGACAAAATTG+TGG | + | chr8_4:46070865-46070884 | None:intergenic | 30.0% | |
| ! | GTTAATTGCAACATGCTTTT+AGG | + | chr8_4:46070959-46070978 | None:intergenic | 30.0% |
| !!! | TCATCATTTTTTGCAGCTTT+TGG | + | chr8_4:46071024-46071043 | None:intergenic | 30.0% |
| ! | GAAAGTGCAAATGTTACTAA+GGG | + | chr8_4:46071087-46071106 | None:intergenic | 30.0% |
| TAAAGTTGAGAAACATACTG+CGG | + | chr8_4:46071130-46071149 | None:intergenic | 30.0% | |
| !!! | AGCACAGTACTCTTTTTTTT+TGG | - | chr8_4:46071196-46071215 | Msa1328350:intron | 30.0% |
| TTTGTCCCTGAAATTGTAAT+AGG | - | chr8_4:46071268-46071287 | Msa1328350:CDS | 30.0% | |
| GATTGACCTATTACAATTTC+AGG | + | chr8_4:46071277-46071296 | None:intergenic | 30.0% | |
| ACATAACATTGTCTAACAGA+AGG | + | chr8_4:46071308-46071327 | None:intergenic | 30.0% | |
| ! | CAATGGACGAAATTAACTTT+TGG | - | chr8_4:46071384-46071403 | Msa1328350:intron | 30.0% |
| GGAAATAAAAAGTAACTCCT+AGG | + | chr8_4:46071433-46071452 | None:intergenic | 30.0% | |
| TGCTACATCTTCATTTAATG+TGG | - | chr8_4:46071544-46071563 | Msa1328350:intron | 30.0% | |
| AGTTTAGCTATTAGACAACA+TGG | + | chr8_4:46071574-46071593 | None:intergenic | 30.0% | |
| ! | AACCTAACTTCCTAAACTTT+TGG | + | chr8_4:46071841-46071860 | None:intergenic | 30.0% |
| TAGGAAGTTAGGTTAATGAA+TGG | - | chr8_4:46071847-46071866 | Msa1328350:intron | 30.0% | |
| CCACATGCAGAAAATAAATA+TGG | + | chr8_4:46071897-46071916 | None:intergenic | 30.0% | |
| !! | CCATATTTATTTTCTGCATG+TGG | - | chr8_4:46071894-46071913 | Msa1328350:intron | 30.0% |
| AAATACCAATCCAACAACTT+GGG | + | chr8_4:46072111-46072130 | None:intergenic | 30.0% | |
| TAAATACCAATCCAACAACT+TGG | + | chr8_4:46072112-46072131 | None:intergenic | 30.0% | |
| AAAGGACCTTGATTCTTTAT+TGG | - | chr8_4:46072143-46072162 | Msa1328350:intron | 30.0% | |
| AAAGTGAGTCTCTTTCAAAA+TGG | - | chr8_4:46072232-46072251 | Msa1328350:intron | 30.0% | |
| !!! | AGCCTTATGATTTTAGTTTC+AGG | - | chr8_4:46072264-46072283 | Msa1328350:intron | 30.0% |
| TAAGTGATTTATTAGTGTGG+TGG | - | chr8_4:46072306-46072325 | Msa1328350:intron | 30.0% | |
| ACCCAGAAAAGAAAAATGCT+AGG | + | chr8_4:46067379-46067398 | None:intergenic | 35.0% | |
| GGGAAAACTGAATGTAAAAC+GGG | + | chr8_4:46067405-46067424 | None:intergenic | 35.0% | |
| CGGGAAAACTGAATGTAAAA+CGG | + | chr8_4:46067406-46067425 | None:intergenic | 35.0% | |
| CTCATGGTTAACTGACAAAA+GGG | - | chr8_4:46067964-46067983 | Msa1328350:intron | 35.0% | |
| TATTGTTGAATGTGGAAAGC+AGG | - | chr8_4:46068126-46068145 | Msa1328350:intron | 35.0% | |
| !!! | GTTTTGAAAGCTTTGGTTTC+AGG | - | chr8_4:46068298-46068317 | Msa1328350:intron | 35.0% |
| ! | TTCAGGTAGATAAGTTGAAG+AGG | - | chr8_4:46068315-46068334 | Msa1328350:intron | 35.0% |
| !! | AAGAGCATTTACAAGACCTT+TGG | - | chr8_4:46068376-46068395 | Msa1328350:intron | 35.0% |
| ! | AGAGCATTTACAAGACCTTT+GGG | - | chr8_4:46068377-46068396 | Msa1328350:intron | 35.0% |
| CTAACATATGGAGGAAGATA+AGG | + | chr8_4:46068422-46068441 | None:intergenic | 35.0% | |
| AAGAGAGAGAGACTAACATA+TGG | + | chr8_4:46068434-46068453 | None:intergenic | 35.0% | |
| TGAGTTTGACAAAACCAAAG+TGG | - | chr8_4:46068620-46068639 | Msa1328350:CDS | 35.0% | |
| CTCATTGTCAGATGCATATT+TGG | + | chr8_4:46068715-46068734 | None:intergenic | 35.0% | |
| CAAGTTGTGAATTTCAGACA+AGG | - | chr8_4:46068894-46068913 | Msa1328350:CDS | 35.0% | |
| !!! | TCATGTGGTTTTGGTCAATA+GGG | + | chr8_4:46068977-46068996 | None:intergenic | 35.0% |
| ! | GCTTTGAATTACTTCTCATG+TGG | + | chr8_4:46068992-46069011 | None:intergenic | 35.0% |
| CTGTAATTATTGACAGTGTC+AGG | + | chr8_4:46069125-46069144 | None:intergenic | 35.0% | |
| GACACTGTCAATAATTACAG+TGG | - | chr8_4:46069125-46069144 | Msa1328350:intron | 35.0% | |
| CATCTATACAAGAAGAAGGA+AGG | - | chr8_4:46069189-46069208 | Msa1328350:intron | 35.0% | |
| TCTATACAAGAAGAAGGAAG+GGG | - | chr8_4:46069191-46069210 | Msa1328350:intron | 35.0% | |
| CTGCAACTTTAATTGATCCA+TGG | + | chr8_4:46069336-46069355 | None:intergenic | 35.0% | |
| CATGGATCAATTAAAGTTGC+AGG | - | chr8_4:46069334-46069353 | Msa1328350:intron | 35.0% | |
| GGTAATTACACTTATGTGTC+GGG | - | chr8_4:46069355-46069374 | Msa1328350:intron | 35.0% | |
| GTAATTACACTTATGTGTCG+GGG | - | chr8_4:46069356-46069375 | Msa1328350:intron | 35.0% | |
| GGAGATTATCAGAACATGAA+AGG | - | chr8_4:46069512-46069531 | Msa1328350:CDS | 35.0% | |
| ATTATCTGCTGGTGAATTTG+AGG | + | chr8_4:46069548-46069567 | None:intergenic | 35.0% | |
| TCTGACACTTTATTATCTGC+TGG | + | chr8_4:46069559-46069578 | None:intergenic | 35.0% | |
| TCAAAAACACCTTCAACTTC+TGG | - | chr8_4:46069676-46069695 | Msa1328350:intron | 35.0% | |
| CAAAAACACCTTCAACTTCT+GGG | - | chr8_4:46069677-46069696 | Msa1328350:intron | 35.0% | |
| AAATAAGACCCAGAAGTTGA+AGG | + | chr8_4:46069688-46069707 | None:intergenic | 35.0% | |
| TTATTTCAGCCAATGTAGCA+AGG | - | chr8_4:46069702-46069721 | Msa1328350:intron | 35.0% | |
| ! | GATCTTTTTCCTTGCTACAT+TGG | + | chr8_4:46069714-46069733 | None:intergenic | 35.0% |
| GAATCCAAAACAAGAGAAGT+TGG | - | chr8_4:46069763-46069782 | Msa1328350:intron | 35.0% | |
| TTGAATATAACCAGACGTGT+CGG | - | chr8_4:46069984-46070003 | Msa1328350:CDS | 35.0% | |
| CTTTAGATTGAAGATGTGTC+TGG | + | chr8_4:46070019-46070038 | None:intergenic | 35.0% | |
| TCGTGTTAGTTACTAACTGT+TGG | - | chr8_4:46070041-46070060 | Msa1328350:CDS | 35.0% | |
| GTAAAATTCAGGTACCTACT+TGG | - | chr8_4:46070104-46070123 | Msa1328350:CDS | 35.0% | |
| ACTTGCTTCTTTGAACTTGA+AGG | - | chr8_4:46070130-46070149 | Msa1328350:CDS | 35.0% | |
| CTTGCTTCTTTGAACTTGAA+GGG | - | chr8_4:46070131-46070150 | Msa1328350:CDS | 35.0% | |
| GGTAAATCATTGTGACAGAA+AGG | + | chr8_4:46070226-46070245 | None:intergenic | 35.0% | |
| CACACCTATAATTACAATGC+CGG | - | chr8_4:46070245-46070264 | Msa1328350:intron | 35.0% | |
| TAGTCCGGCATTGTAATTAT+AGG | + | chr8_4:46070252-46070271 | None:intergenic | 35.0% | |
| ATAGACCAAACTCTTTAGTC+CGG | + | chr8_4:46070267-46070286 | None:intergenic | 35.0% | |
| TTACAGTTCAATGTCTGGTT+CGG | + | chr8_4:46070338-46070357 | None:intergenic | 35.0% | |
| ACATTGAACTGTAAGTCCTT+TGG | - | chr8_4:46070344-46070363 | Msa1328350:CDS | 35.0% | |
| ACGGTTGAACTATTATCCAA+AGG | + | chr8_4:46070363-46070382 | None:intergenic | 35.0% | |
| !!! | GTTTGATAGTAGTTTTGTCC+CGG | + | chr8_4:46070400-46070419 | None:intergenic | 35.0% |
| AGGCAGATTCAAAGTTCAAT+CGG | - | chr8_4:46070445-46070464 | Msa1328350:CDS | 35.0% | |
| !!! | GGTTCGGTTTTTTTAAACAC+CGG | - | chr8_4:46070479-46070498 | Msa1328350:CDS | 35.0% |
| CTCTTGACTGCAAGAATATT+TGG | + | chr8_4:46070521-46070540 | None:intergenic | 35.0% | |
| TTGTAGGCATACTTAGAACA+TGG | - | chr8_4:46070571-46070590 | Msa1328350:CDS | 35.0% | |
| ATACTTAGAACATGGCATAC+CGG | - | chr8_4:46070579-46070598 | Msa1328350:CDS | 35.0% | |
| GGTTGTAGCATTAATGCAAA+AGG | - | chr8_4:46070615-46070634 | Msa1328350:CDS | 35.0% | |
| TTTCAGGCAACAATAGTAGT+AGG | - | chr8_4:46070766-46070785 | Msa1328350:CDS | 35.0% | |
| ! | GTGAAAGCAAGAAGCATATT+TGG | - | chr8_4:46071045-46071064 | Msa1328350:intron | 35.0% |
| ! | GGAAAGTGCAAATGTTACTA+AGG | + | chr8_4:46071088-46071107 | None:intergenic | 35.0% |
| AAAGTTGAGAAACATACTGC+GGG | + | chr8_4:46071129-46071148 | None:intergenic | 35.0% | |
| TAATTTCGTCCATTGAGACT+TGG | + | chr8_4:46071379-46071398 | None:intergenic | 35.0% | |
| ! | CAATTTTGTCACTAGAGATG+TGG | - | chr8_4:46071497-46071516 | Msa1328350:CDS | 35.0% |
| TTGTCACGCATCAATCAAAA+TGG | + | chr8_4:46071608-46071627 | None:intergenic | 35.0% | |
| !! | GATGGATTTGATTTGACTAG+TGG | - | chr8_4:46071664-46071683 | Msa1328350:intron | 35.0% |
| TGCCAAAAGTTTAGGAAGTT+AGG | - | chr8_4:46071836-46071855 | Msa1328350:intron | 35.0% | |
| GATACTAATTCCCAAGTTGT+TGG | - | chr8_4:46072098-46072117 | Msa1328350:intron | 35.0% | |
| TAATTCCCAAGTTGTTGGAT+TGG | - | chr8_4:46072103-46072122 | Msa1328350:intron | 35.0% | |
| ACCTTGATTCTTTATTGGAC+TGG | - | chr8_4:46072148-46072167 | Msa1328350:intron | 35.0% | |
| TCCAGTCCAATAAAGAATCA+AGG | + | chr8_4:46072152-46072171 | None:intergenic | 35.0% | |
| ! | GCTTGGTTTCTTATTTCATC+AGG | + | chr8_4:46072189-46072208 | None:intergenic | 35.0% |
| AGTTAAATGCCTTGAAGGAA+GGG | - | chr8_4:46072209-46072228 | Msa1328350:intron | 35.0% | |
| ! | TTGGAAGTGTACTTCGAATA+TGG | - | chr8_4:46072446-46072465 | Msa1328350:five_prime_UTR | 35.0% |
| ! | TCAACTCTGTTTTGTGGTAC+TGG | - | chr8_4:46067154-46067173 | Msa1328350:three_prime_UTR | 40.0% |
| AAGACTGAGAGAGTAGAAGA+AGG | + | chr8_4:46067248-46067267 | None:intergenic | 40.0% | |
| ! | CCTTTTGTCAGTTAACCATG+AGG | + | chr8_4:46067966-46067985 | None:intergenic | 40.0% |
| CCTCATGGTTAACTGACAAA+AGG | - | chr8_4:46067963-46067982 | Msa1328350:intron | 40.0% | |
| GGGAGCAAAGGAATGAAAAA+TGG | - | chr8_4:46068166-46068185 | Msa1328350:intron | 40.0% | |
| ACATATGGAGGAAGATAAGG+CGG | + | chr8_4:46068419-46068438 | None:intergenic | 40.0% | |
| AGAGAGAGACTAACATATGG+AGG | + | chr8_4:46068431-46068450 | None:intergenic | 40.0% | |
| ACAGTGAGTTTGACGAAATC+AGG | - | chr8_4:46068486-46068505 | Msa1328350:intron | 40.0% | |
| AGCGTGCATGTTTGAATTGA+CGG | + | chr8_4:46068586-46068605 | None:intergenic | 40.0% | |
| !! | ATAAAATCACGGTGCCACTT+TGG | + | chr8_4:46068637-46068656 | None:intergenic | 40.0% |
| ATTTGGATTCGCGACGAATT+TGG | + | chr8_4:46068698-46068717 | None:intergenic | 40.0% | |
| TGTTGGAAGAAGAAGTGGTT+AGG | - | chr8_4:46068862-46068881 | Msa1328350:CDS | 40.0% | |
| !!! | CTCATGTGGTTTTGGTCAAT+AGG | + | chr8_4:46068978-46068997 | None:intergenic | 40.0% |
| ! | TGAGCTGATTCATGTTTGAG+TGG | + | chr8_4:46069308-46069327 | None:intergenic | 40.0% |
| !!! | TTTGTTTTGGTTGCCTTAGC+TGG | - | chr8_4:46069486-46069505 | Msa1328350:CDS | 40.0% |
| GATAATCTCCATTCCAGCTA+AGG | + | chr8_4:46069502-46069521 | None:intergenic | 40.0% | |
| TGTGAGAATTGGTACATCCA+AGG | - | chr8_4:46069639-46069658 | Msa1328350:intron | 40.0% | |
| !! | TGGACCAACTTCTCTTGTTT+TGG | + | chr8_4:46069770-46069789 | None:intergenic | 40.0% |
| TGTTCTGGTGAGATCAACAT+TGG | + | chr8_4:46069821-46069840 | None:intergenic | 40.0% | |
| CGATGACTTACTTCAATCTG+TGG | + | chr8_4:46069864-46069883 | None:intergenic | 40.0% | |
| TCTCTTTGCTAGTGTTTCAC+AGG | + | chr8_4:46069899-46069918 | None:intergenic | 40.0% | |
| AAGAAGCAAGTTTCCCAAGT+AGG | + | chr8_4:46070121-46070140 | None:intergenic | 40.0% | |
| CGGCATTGTAATTATAGGTG+TGG | + | chr8_4:46070247-46070266 | None:intergenic | 40.0% | |
| AGGACTTACAGTTCAATGTC+TGG | + | chr8_4:46070343-46070362 | None:intergenic | 40.0% | |
| !! | ACCGTTTTAAACTTCCGAAC+CGG | - | chr8_4:46070378-46070397 | Msa1328350:CDS | 40.0% |
| !!! | ATAGTAGTTTTGTCCCGGTT+CGG | + | chr8_4:46070395-46070414 | None:intergenic | 40.0% |
| GTTCAATCGGTTGAACCATT+TGG | - | chr8_4:46070458-46070477 | Msa1328350:CDS | 40.0% | |
| ATCGGTTGAACCATTTGGTT+CGG | - | chr8_4:46070463-46070482 | Msa1328350:CDS | 40.0% | |
| TGGCAAGCTAAGATTTCATC+CGG | + | chr8_4:46070501-46070520 | None:intergenic | 40.0% | |
| CTTCTGACAATGCATGTTTC+AGG | - | chr8_4:46070750-46070769 | Msa1328350:CDS | 40.0% | |
| ! | CTTTTGGACATGTCTGTTGA+TGG | + | chr8_4:46071008-46071027 | None:intergenic | 40.0% |
| ! | AGCAAGAAGCATATTTGGAC+TGG | - | chr8_4:46071050-46071069 | Msa1328350:intron | 40.0% |
| ! | GAAGCATATTTGGACTGGAA+TGG | - | chr8_4:46071055-46071074 | Msa1328350:intron | 40.0% |
| GTAACATTTGCACTTTCCTG+TGG | - | chr8_4:46071090-46071109 | Msa1328350:intron | 40.0% | |
| ! | CCTAAACTTTTGGCAGAGTT+TGG | + | chr8_4:46071831-46071850 | None:intergenic | 40.0% |
| CCAAACTCTGCCAAAAGTTT+AGG | - | chr8_4:46071828-46071847 | Msa1328350:intron | 40.0% | |
| ! | CTTCAAGGCATTTAACTGCT+TGG | + | chr8_4:46072206-46072225 | None:intergenic | 40.0% |
| CAAGCAGTTAAATGCCTTGA+AGG | - | chr8_4:46072204-46072223 | Msa1328350:intron | 40.0% | |
| CAGTTAAATGCCTTGAAGGA+AGG | - | chr8_4:46072208-46072227 | Msa1328350:intron | 40.0% | |
| !!! | CTCTGTTTTGTGGTACTGGT+AGG | - | chr8_4:46067158-46067177 | Msa1328350:three_prime_UTR | 45.0% |
| GAGGAAAAAGACGAGGTTGT+TGG | + | chr8_4:46067226-46067245 | None:intergenic | 45.0% | |
| GAAGAAGGAGGAAAAAGACG+AGG | + | chr8_4:46067233-46067252 | None:intergenic | 45.0% | |
| ACTGAGAGAGTAGAAGAAGG+AGG | + | chr8_4:46067245-46067264 | None:intergenic | 45.0% | |
| ATGTGGAAAGCAGGAGAAGA+TGG | - | chr8_4:46068135-46068154 | Msa1328350:intron | 45.0% | |
| ! | GACATTGGAACTTCTAGCTG+AGG | - | chr8_4:46068833-46068852 | Msa1328350:CDS | 45.0% |
| ! | ATTGGAACTTCTAGCTGAGG+TGG | - | chr8_4:46068836-46068855 | Msa1328350:CDS | 45.0% |
| CTTCTGGCAAGAGAATTCTG+TGG | + | chr8_4:46069074-46069093 | None:intergenic | 45.0% | |
| !! | CTTTCTGCTAGAAGCACTTC+TGG | + | chr8_4:46069090-46069109 | None:intergenic | 45.0% |
| TGAATCAGCTCAGAAGTCCA+TGG | - | chr8_4:46069316-46069335 | Msa1328350:intron | 45.0% | |
| TTTGGTTGCCTTAGCTGGAA+TGG | - | chr8_4:46069491-46069510 | Msa1328350:CDS | 45.0% | |
| CAATGCCGGACTAAAGAGTT+TGG | - | chr8_4:46070259-46070278 | Msa1328350:intron | 45.0% | |
| !! | CCCGGTTCGGAAGTTTAAAA+CGG | + | chr8_4:46070382-46070401 | None:intergenic | 45.0% |
| !! | CCGTTTTAAACTTCCGAACC+GGG | - | chr8_4:46070379-46070398 | Msa1328350:CDS | 45.0% |
| ACAACCATTTCCGGACTTTC+CGG | + | chr8_4:46070601-46070620 | None:intergenic | 45.0% | |
| CAGGCAACAATAGTAGTAGG+AGG | - | chr8_4:46070769-46070788 | Msa1328350:CDS | 45.0% | |
| TTGCACTTTCCTGTGGAAGT+TGG | - | chr8_4:46071097-46071116 | Msa1328350:intron | 45.0% | |
| ATTGAGACTTGGCAGTGATG+TGG | + | chr8_4:46071368-46071387 | None:intergenic | 45.0% | |
| ACATCACTGCCAAGTCTCAA+TGG | - | chr8_4:46071367-46071386 | Msa1328350:intron | 45.0% | |
| ACTCACTTTCCCTTCCTTCA+AGG | + | chr8_4:46072221-46072240 | None:intergenic | 45.0% | |
| !! | CATATTTATTAATATTATTA+AGG | + | chr8_4:46067331-46067350 | None:intergenic | 5.0% |
| GGAAAGCAGGAGAAGATGGA+AGG | - | chr8_4:46068139-46068158 | Msa1328350:intron | 50.0% | |
| AAGCAGGAGAAGATGGAAGG+AGG | - | chr8_4:46068142-46068161 | Msa1328350:intron | 50.0% | |
| AGGAGAAGATGGAAGGAGGA+GGG | - | chr8_4:46068146-46068165 | Msa1328350:intron | 50.0% | |
| AGACGAGGCAAAGATCCCAA+AGG | + | chr8_4:46068395-46068414 | None:intergenic | 50.0% | |
| ! | GGCAGTGTTGGAAGAAGAAG+TGG | - | chr8_4:46068857-46068876 | Msa1328350:CDS | 50.0% |
| CTGGCAAGAGAATTCTGTGG+TGG | + | chr8_4:46069071-46069090 | None:intergenic | 50.0% | |
| CACTGGACACGCCTAATCTA+AGG | - | chr8_4:46069383-46069402 | Msa1328350:intron | 50.0% | |
| GCACGGACACTCCTTAGATT+AGG | + | chr8_4:46069397-46069416 | None:intergenic | 50.0% | |
| TGACACTGACACGCAGACAT+CGG | - | chr8_4:46069937-46069956 | Msa1328350:CDS | 50.0% | |
| ! | ATAACCAGACGTGTCGGTGT+TGG | - | chr8_4:46069990-46070009 | Msa1328350:CDS | 50.0% |
| ACATGGCATACCGGAAAGTC+CGG | - | chr8_4:46070588-46070607 | Msa1328350:CDS | 50.0% | |
| CATACCGGAAAGTCCGGAAA+TGG | - | chr8_4:46070594-46070613 | Msa1328350:CDS | 50.0% | |
| ! | CTAGAGATGTGGTAGCGATG+TGG | - | chr8_4:46071508-46071527 | Msa1328350:CDS | 50.0% |
| CAGGAGAAGATGGAAGGAGG+AGG | - | chr8_4:46068145-46068164 | Msa1328350:intron | 55.0% | |
| ATGGAAGGAGGAGGGAGCAA+AGG | - | chr8_4:46068154-46068173 | Msa1328350:intron | 55.0% | |
| GGAAGATAAGGCGGAAGACG+AGG | + | chr8_4:46068410-46068429 | None:intergenic | 55.0% | |
| TCTAGCTGAGGTGGCAGTGT+TGG | - | chr8_4:46068845-46068864 | Msa1328350:CDS | 55.0% | |
| TTATGTGTCGGGGTCGACAC+TGG | - | chr8_4:46069366-46069385 | Msa1328350:intron | 55.0% | |
| GGGTGAAGACCAACTTCCAC+AGG | + | chr8_4:46071109-46071128 | None:intergenic | 55.0% | |
| GCAGTGATGTGGAGTTCACG+TGG | + | chr8_4:46071357-46071376 | None:intergenic | 55.0% | |
| GTAGCGATGTGGAGTCTGCA+CGG | - | chr8_4:46071519-46071538 | Msa1328350:CDS | 55.0% | |
| GTGTCCAACACCGACACGTC+TGG | + | chr8_4:46069997-46070016 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 46067153 | 46072535 | 46067153 | ID=Msa1328350;Name=Msa1328350 |
| chr8_4 | mRNA | 46067153 | 46072535 | 46067153 | ID=Msa1328350-mRNA-1;Parent=Msa1328350;Name=Msa1328350-mRNA-1;_AED=0.12;_eAED=0.12;_QI=244|1|1|1|0.8|0.72|11|272|583 |
| chr8_4 | exon | 46067153 | 46067685 | 46067153 | ID=Msa1328350-mRNA-1:exon:13060;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46068557 | 46068673 | 46068557 | ID=Msa1328350-mRNA-1:exon:13059;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46068833 | 46068916 | 46068833 | ID=Msa1328350-mRNA-1:exon:13058;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46069052 | 46069111 | 46069052 | ID=Msa1328350-mRNA-1:exon:13057;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46069474 | 46069573 | 46069474 | ID=Msa1328350-mRNA-1:exon:13056;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46069816 | 46070183 | 46069816 | ID=Msa1328350-mRNA-1:exon:13055;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46070333 | 46070854 | 46070333 | ID=Msa1328350-mRNA-1:exon:13054;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46071252 | 46071368 | 46071252 | ID=Msa1328350-mRNA-1:exon:13053;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46071457 | 46071540 | 46071457 | ID=Msa1328350-mRNA-1:exon:13052;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46072007 | 46072092 | 46072007 | ID=Msa1328350-mRNA-1:exon:13051;Parent=Msa1328350-mRNA-1 |
| chr8_4 | exon | 46072339 | 46072535 | 46072339 | ID=Msa1328350-mRNA-1:exon:13050;Parent=Msa1328350-mRNA-1 |
| chr8_4 | five_prime_UTR | 46072339 | 46072535 | 46072339 | ID=Msa1328350-mRNA-1:five_prime_utr;Parent=Msa1328350-mRNA-1 |
| chr8_4 | five_prime_UTR | 46072046 | 46072092 | 46072046 | ID=Msa1328350-mRNA-1:five_prime_utr;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46072007 | 46072045 | 46072007 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46071457 | 46071540 | 46071457 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46071252 | 46071368 | 46071252 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46070333 | 46070854 | 46070333 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46069816 | 46070183 | 46069816 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46069474 | 46069573 | 46069474 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46069052 | 46069111 | 46069052 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46068833 | 46068916 | 46068833 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46068557 | 46068673 | 46068557 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | CDS | 46067425 | 46067685 | 46067425 | ID=Msa1328350-mRNA-1:cds;Parent=Msa1328350-mRNA-1 |
| chr8_4 | three_prime_UTR | 46067153 | 46067424 | 46067153 | ID=Msa1328350-mRNA-1:three_prime_utr;Parent=Msa1328350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
