Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296120 | G7LGE4 | 97.595 | 582 | 14 | 0 | 1 | 582 | 16 | 597 | 0.0 | 1173 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1255900 | Msa1296120 | 0.886879 | 2.328557e-72 | -8.615850e-47 |
| Msa1296120 | Msa1328320 | 0.981480 | 1.085065e-152 | -8.615850e-47 |
| Msa1296120 | Msa1328350 | 0.952156 | 4.439304e-110 | -8.615850e-47 |
| Msa1040120 | Msa1296120 | 0.801246 | 9.856565e-49 | -8.615850e-47 |
| Msa1203490 | Msa1296120 | 0.949775 | 6.415292e-108 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296120 | MtrunA17_Chr8g0374741 | 97.595 | 582 | 14 | 0 | 1 | 582 | 16 | 597 | 0.0 | 1173 |
| Msa1296120 | MtrunA17_Chr5g0402501 | 68.367 | 588 | 126 | 8 | 1 | 582 | 13 | 546 | 0.0 | 733 |
| Msa1296120 | MtrunA17_Chr1g0153951 | 50.348 | 574 | 248 | 7 | 8 | 580 | 8 | 545 | 1.03e-162 | 475 |
| Msa1296120 | MtrunA17_Chr3g0133631 | 48.448 | 580 | 233 | 12 | 8 | 580 | 48 | 568 | 2.48e-159 | 468 |
| Msa1296120 | MtrunA17_Chr4g0028651 | 33.836 | 597 | 337 | 17 | 18 | 580 | 121 | 693 | 1.52e-81 | 270 |
| Msa1296120 | MtrunA17_Chr5g0435281 | 39.104 | 335 | 178 | 5 | 269 | 580 | 178 | 509 | 3.27e-73 | 243 |
| Msa1296120 | MtrunA17_Chr8g0373901 | 26.190 | 588 | 372 | 11 | 22 | 580 | 66 | 620 | 3.44e-45 | 169 |
| Msa1296120 | MtrunA17_Chr5g0403231 | 28.523 | 589 | 341 | 17 | 25 | 580 | 77 | 618 | 3.05e-44 | 166 |
| Msa1296120 | MtrunA17_Chr5g0399331 | 26.683 | 416 | 268 | 9 | 187 | 580 | 175 | 575 | 4.38e-43 | 162 |
| Msa1296120 | MtrunA17_Chr4g0034351 | 29.494 | 356 | 215 | 8 | 249 | 580 | 269 | 612 | 1.02e-35 | 142 |
| Msa1296120 | MtrunA17_Chr3g0115381 | 33.505 | 194 | 116 | 6 | 343 | 530 | 528 | 714 | 1.53e-19 | 92.8 |
| Msa1296120 | MtrunA17_Chr1g0163291 | 29.050 | 179 | 111 | 7 | 368 | 539 | 396 | 565 | 1.09e-11 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296120 | AT4G37080.2 | 61.296 | 602 | 188 | 11 | 2 | 582 | 33 | 610 | 0.0 | 654 |
| Msa1296120 | AT4G37080.3 | 61.296 | 602 | 188 | 11 | 2 | 582 | 33 | 610 | 0.0 | 654 |
| Msa1296120 | AT4G37080.1 | 61.296 | 602 | 188 | 11 | 2 | 582 | 20 | 597 | 0.0 | 652 |
| Msa1296120 | AT4G37080.4 | 59.245 | 503 | 160 | 11 | 2 | 483 | 33 | 511 | 5.85e-170 | 493 |
| Msa1296120 | AT5G42690.5 | 49.233 | 587 | 214 | 13 | 1 | 580 | 2 | 511 | 4.79e-155 | 455 |
| Msa1296120 | AT5G42690.2 | 49.138 | 580 | 215 | 11 | 4 | 580 | 36 | 538 | 4.75e-154 | 453 |
| Msa1296120 | AT5G42690.4 | 49.138 | 580 | 215 | 11 | 4 | 580 | 36 | 538 | 4.75e-154 | 453 |
| Msa1296120 | AT5G42690.1 | 49.310 | 580 | 213 | 12 | 4 | 580 | 36 | 537 | 3.13e-153 | 451 |
| Msa1296120 | AT5G42690.3 | 49.372 | 557 | 202 | 11 | 27 | 580 | 7 | 486 | 5.37e-148 | 436 |
| Msa1296120 | AT2G39690.2 | 40.000 | 330 | 171 | 7 | 269 | 580 | 96 | 416 | 1.73e-74 | 244 |
| Msa1296120 | AT2G39690.4 | 40.000 | 330 | 171 | 7 | 269 | 580 | 177 | 497 | 1.50e-73 | 244 |
| Msa1296120 | AT2G39690.5 | 40.000 | 330 | 171 | 7 | 269 | 580 | 203 | 523 | 1.72e-73 | 244 |
| Msa1296120 | AT2G39690.8 | 40.426 | 329 | 170 | 8 | 269 | 580 | 177 | 496 | 1.82e-73 | 243 |
| Msa1296120 | AT2G39690.1 | 40.426 | 329 | 170 | 8 | 269 | 580 | 203 | 522 | 2.20e-73 | 244 |
| Msa1296120 | AT3G12540.2 | 37.822 | 349 | 198 | 6 | 249 | 580 | 157 | 503 | 2.32e-69 | 233 |
| Msa1296120 | AT3G12540.1 | 37.822 | 349 | 198 | 6 | 249 | 580 | 224 | 570 | 3.36e-69 | 234 |
| Msa1296120 | AT5G60720.1 | 29.916 | 595 | 313 | 19 | 63 | 580 | 122 | 689 | 2.91e-60 | 213 |
| Msa1296120 | AT1G16750.1 | 32.958 | 355 | 189 | 9 | 270 | 580 | 178 | 527 | 1.42e-47 | 174 |
| Msa1296120 | AT3G13000.3 | 32.486 | 354 | 192 | 9 | 269 | 580 | 226 | 574 | 1.41e-44 | 167 |
| Msa1296120 | AT3G13000.2 | 32.486 | 354 | 192 | 9 | 269 | 580 | 226 | 574 | 1.41e-44 | 167 |
| Msa1296120 | AT3G13000.1 | 32.486 | 354 | 192 | 9 | 269 | 580 | 197 | 545 | 1.48e-44 | 166 |
| Msa1296120 | AT2G39690.6 | 39.827 | 231 | 114 | 6 | 269 | 483 | 203 | 424 | 4.81e-43 | 160 |
| Msa1296120 | AT2G39690.7 | 40.435 | 230 | 113 | 7 | 269 | 483 | 203 | 423 | 6.31e-43 | 159 |
| Msa1296120 | AT5G47380.4 | 30.060 | 336 | 205 | 9 | 265 | 586 | 274 | 593 | 1.55e-41 | 159 |
| Msa1296120 | AT5G47380.5 | 30.060 | 336 | 205 | 9 | 265 | 586 | 218 | 537 | 1.59e-41 | 158 |
| Msa1296120 | AT5G47380.1 | 30.060 | 336 | 205 | 9 | 265 | 586 | 274 | 593 | 1.81e-41 | 159 |
| Msa1296120 | AT2G23700.1 | 29.670 | 364 | 212 | 10 | 244 | 580 | 355 | 701 | 3.14e-38 | 150 |
| Msa1296120 | AT3G18900.5 | 32.416 | 327 | 189 | 6 | 262 | 580 | 223 | 525 | 8.02e-36 | 141 |
| Msa1296120 | AT3G18900.4 | 32.416 | 327 | 189 | 6 | 262 | 580 | 228 | 530 | 1.07e-35 | 141 |
| Msa1296120 | AT3G18900.6 | 32.416 | 327 | 189 | 6 | 262 | 580 | 147 | 449 | 1.16e-35 | 139 |
| Msa1296120 | AT3G18900.3 | 32.416 | 327 | 189 | 6 | 262 | 580 | 147 | 449 | 1.16e-35 | 139 |
| Msa1296120 | AT5G66600.2 | 28.909 | 339 | 210 | 6 | 265 | 580 | 258 | 588 | 2.89e-35 | 140 |
| Msa1296120 | AT5G66600.7 | 28.909 | 339 | 210 | 6 | 265 | 580 | 224 | 554 | 2.94e-35 | 140 |
| Msa1296120 | AT5G66600.14 | 28.909 | 339 | 210 | 6 | 265 | 580 | 278 | 608 | 3.28e-35 | 140 |
| Msa1296120 | AT5G66600.1 | 28.909 | 339 | 210 | 6 | 265 | 580 | 278 | 608 | 3.28e-35 | 140 |
| Msa1296120 | AT5G66600.4 | 28.909 | 339 | 210 | 6 | 265 | 580 | 278 | 608 | 3.28e-35 | 140 |
| Msa1296120 | AT5G66600.9 | 28.909 | 339 | 210 | 6 | 265 | 580 | 278 | 608 | 3.28e-35 | 140 |
| Msa1296120 | AT5G66600.3 | 28.909 | 339 | 210 | 6 | 265 | 580 | 278 | 608 | 3.28e-35 | 140 |
| Msa1296120 | AT1G76620.1 | 27.059 | 340 | 204 | 9 | 269 | 580 | 193 | 516 | 1.10e-32 | 132 |
| Msa1296120 | AT2G39690.3 | 38.462 | 182 | 97 | 4 | 269 | 438 | 177 | 355 | 1.32e-32 | 129 |
| Msa1296120 | AT1G43020.1 | 34.197 | 193 | 117 | 4 | 357 | 541 | 211 | 401 | 1.35e-26 | 113 |
| Msa1296120 | AT1G21060.2 | 27.052 | 329 | 207 | 6 | 267 | 582 | 185 | 493 | 3.75e-26 | 112 |
| Msa1296120 | AT1G21060.1 | 27.052 | 329 | 207 | 6 | 267 | 582 | 197 | 505 | 4.22e-26 | 112 |
| Msa1296120 | AT5G47380.2 | 29.787 | 235 | 137 | 7 | 264 | 486 | 273 | 491 | 1.17e-22 | 102 |
| Msa1296120 | AT1G16750.2 | 31.553 | 206 | 105 | 5 | 270 | 440 | 178 | 382 | 1.53e-22 | 100 |
| Msa1296120 | AT5G47380.3 | 30.131 | 229 | 132 | 7 | 265 | 481 | 274 | 486 | 3.95e-22 | 100 |
| Msa1296120 | AT5G66600.12 | 29.752 | 242 | 142 | 4 | 265 | 483 | 278 | 514 | 5.50e-22 | 100 |
| Msa1296120 | AT5G66600.11 | 29.752 | 242 | 142 | 4 | 265 | 483 | 278 | 514 | 5.50e-22 | 100 |
| Msa1296120 | AT5G66600.6 | 29.752 | 242 | 142 | 4 | 265 | 483 | 278 | 514 | 5.50e-22 | 100 |
| Msa1296120 | AT5G66600.13 | 29.752 | 242 | 142 | 4 | 265 | 483 | 278 | 514 | 5.50e-22 | 100 |
| Msa1296120 | AT4G08550.1 | 28.151 | 238 | 157 | 6 | 343 | 576 | 408 | 635 | 5.04e-19 | 91.3 |
| Msa1296120 | AT4G08550.2 | 28.151 | 238 | 157 | 6 | 343 | 576 | 462 | 689 | 6.32e-19 | 91.3 |
| Msa1296120 | AT3G18900.1 | 30.435 | 230 | 131 | 5 | 262 | 483 | 228 | 436 | 1.18e-17 | 86.3 |
| Msa1296120 | AT5G66600.15 | 28.877 | 187 | 115 | 2 | 265 | 435 | 224 | 408 | 3.81e-16 | 81.6 |
| Msa1296120 | AT5G66600.10 | 28.877 | 187 | 115 | 2 | 265 | 435 | 278 | 462 | 4.01e-16 | 82.0 |
| Msa1296120 | AT5G66600.8 | 28.877 | 187 | 115 | 2 | 265 | 435 | 278 | 462 | 4.01e-16 | 82.0 |
| Msa1296120 | AT5G66600.5 | 28.877 | 187 | 115 | 2 | 265 | 435 | 278 | 462 | 4.01e-16 | 82.0 |
| Msa1296120 | AT3G11920.1 | 32.749 | 171 | 111 | 4 | 371 | 539 | 426 | 594 | 1.21e-15 | 80.9 |
| Msa1296120 | AT3G18900.2 | 32.203 | 177 | 96 | 4 | 262 | 435 | 228 | 383 | 7.20e-15 | 77.4 |
| Msa1296120 | AT1G76620.2 | 24.896 | 241 | 145 | 7 | 269 | 483 | 193 | 423 | 2.91e-13 | 72.4 |
| Msa1296120 | AT1G43020.3 | 32.353 | 136 | 83 | 4 | 357 | 486 | 211 | 343 | 3.78e-13 | 71.6 |
Find 106 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATCACTTATTCATTAAT+TGG | 0.167006 | 8_3:-54938530 | None:intergenic |
| TTCTTATTTCATCAGGTAAT+TGG | 0.190698 | 8_3:-54938410 | None:intergenic |
| TTGAGTGGAGATTTCTTTAA+AGG | 0.208758 | 8_3:-54935520 | None:intergenic |
| GTGAAAGCAAGAAGCATATT+TGG | 0.230491 | 8_3:+54937275 | Msa1296120:CDS |
| AATTACTTCTCATGTGGTTT+TGG | 0.235218 | 8_3:-54935213 | None:intergenic |
| AAAGGACCTTGATTCTTTAT+TGG | 0.238431 | 8_3:+54938374 | Msa1296120:CDS |
| AGATCTTCTGAAACTCTATT+TGG | 0.238770 | 8_3:-54935822 | None:intergenic |
| TGGACCAACTTCTCTTGTTT+TGG | 0.239386 | 8_3:-54935997 | None:intergenic |
| ACAACCATTTCCGGACTTTC+CGG | 0.243264 | 8_3:-54936828 | None:intergenic |
| AAGAATTTATGTGAAATTAA+AGG | 0.244278 | 8_3:+54936023 | Msa1296120:CDS |
| ATTTCACATAAATTCTTATA+TGG | 0.245460 | 8_3:-54936017 | None:intergenic |
| TTGGAAGTGTACTTCGAATA+TGG | 0.263651 | 8_3:+54938684 | Msa1296120:three_prime_UTR |
| AATAATTACAGTGGGAATAA+TGG | 0.270800 | 8_3:+54935364 | Msa1296120:CDS |
| AAACATTGCATTTGTTGTTC+TGG | 0.321552 | 8_3:-54936063 | None:intergenic |
| ATTAATGCTACAACCATTTC+CGG | 0.323435 | 8_3:-54936837 | None:intergenic |
| CTTTCTGCTAGAAGCACTTC+TGG | 0.331481 | 8_3:-54935317 | None:intergenic |
| TCTAACATATTTGTGAGAAT+TGG | 0.347512 | 8_3:+54935858 | Msa1296120:CDS |
| AAGAGCATTTACAAGACCTT+TGG | 0.361369 | 8_3:+54934608 | Msa1296120:CDS |
| ATAATTACAGTGGGAATAAT+GGG | 0.374737 | 8_3:+54935365 | Msa1296120:CDS |
| CATGGATCAATTAAAGTTGC+AGG | 0.385031 | 8_3:+54935564 | Msa1296120:CDS |
| GCTTGGTTTCTTATTTCATC+AGG | 0.387730 | 8_3:-54938417 | None:intergenic |
| CTTCAAGGCATTTAACTGCT+TGG | 0.390658 | 8_3:-54938434 | None:intergenic |
| ACTCACTTTCCCTTCCTTCA+AGG | 0.391301 | 8_3:-54938449 | None:intergenic |
| AGAGCATTTACAAGACCTTT+GGG | 0.393492 | 8_3:+54934609 | Msa1296120:CDS |
| ATTATCTGCTGGTGAATTTG+AGG | 0.414829 | 8_3:-54935775 | None:intergenic |
| ACTTGCTTCTTTGAACTTGA+AGG | 0.419293 | 8_3:+54936360 | Msa1296120:CDS |
| GATTATTTACAAGCTTCAAT+TGG | 0.420391 | 8_3:+54938288 | Msa1296120:CDS |
| CAAGCAGTTAAATGCCTTGA+AGG | 0.420884 | 8_3:+54938435 | Msa1296120:CDS |
| GATACTAATTCCCAAGTTGT+TGG | 0.421968 | 8_3:+54938329 | Msa1296120:CDS |
| ACCTTGATTCTTTATTGGAC+TGG | 0.422533 | 8_3:+54938379 | Msa1296120:CDS |
| ATTGTGGACTTACAAACTTA+AGG | 0.436584 | 8_3:-54937076 | None:intergenic |
| GTAAAATTCAGGTACCTACT+TGG | 0.436814 | 8_3:+54936334 | Msa1296120:intron |
| ATGTGGAAAGCAGGAGAAGA+TGG | 0.444562 | 8_3:+54934367 | Msa1296120:exon |
| GGAAAGTGCAAATGTTACTA+AGG | 0.447874 | 8_3:-54937315 | None:intergenic |
| ACTTACAAACTTAAGGTGAT+AGG | 0.449376 | 8_3:-54937069 | None:intergenic |
| TAATTCCCAAGTTGTTGGAT+TGG | 0.451039 | 8_3:+54938334 | Msa1296120:CDS |
| GATTCTGAACAGATATCATA+AGG | 0.452530 | 8_3:-54935975 | None:intergenic |
| CTTGCTTCTTTGAACTTGAA+GGG | 0.457672 | 8_3:+54936361 | Msa1296120:CDS |
| CTTACAAACTTAAGGTGATA+GGG | 0.461257 | 8_3:-54937068 | None:intergenic |
| TCTGACACTTTATTATCTGC+TGG | 0.461649 | 8_3:-54935786 | None:intergenic |
| CAGGAGAAGATGGAAGGAGG+AGG | 0.462824 | 8_3:+54934377 | Msa1296120:exon |
| CTGTAATTATTGACAGTGTC+AGG | 0.470070 | 8_3:-54935352 | None:intergenic |
| CTGCAACTTTAATTGATCCA+TGG | 0.472815 | 8_3:-54935563 | None:intergenic |
| AACCTGAAACTAAAATCATA+AGG | 0.475747 | 8_3:-54938498 | None:intergenic |
| AAGAAGCAAGTTTCCCAAGT+AGG | 0.475798 | 8_3:-54936348 | None:intergenic |
| TTTGGTTGCCTTAGCTGGAA+TGG | 0.476109 | 8_3:+54935721 | Msa1296120:intron |
| ACATGGCATACCGGAAAGTC+CGG | 0.480935 | 8_3:+54936818 | Msa1296120:CDS |
| ATGGAAGGAGGAGGGAGCAA+AGG | 0.484168 | 8_3:+54934386 | Msa1296120:CDS |
| CATACCGGAAAGTCCGGAAA+TGG | 0.487177 | 8_3:+54936824 | Msa1296120:CDS |
| CTAACATATGGAGGAAGATA+AGG | 0.489236 | 8_3:-54934651 | None:intergenic |
| GAATCCAAAACAAGAGAAGT+TGG | 0.490044 | 8_3:+54935993 | Msa1296120:CDS |
| TCTAGCTGAGGTGGCAGTGT+TGG | 0.492182 | 8_3:+54935075 | Msa1296120:CDS |
| TTTCAGGCAACAATAGTAGT+AGG | 0.492409 | 8_3:+54936996 | Msa1296120:intron |
| AAGTGAGTCTCTTTCACAAA+TGG | 0.493275 | 8_3:+54938464 | Msa1296120:CDS |
| CAGTTAAATGCCTTGAAGGA+AGG | 0.493380 | 8_3:+54938439 | Msa1296120:CDS |
| TATTGTTGAATGTGGAAAGC+AGG | 0.495828 | 8_3:+54934358 | None:intergenic |
| TTGCACTTTCCTGTGGAAGT+TGG | 0.498705 | 8_3:+54937327 | Msa1296120:CDS |
| GGTTGTAGCATTAATGCAAA+AGG | 0.498874 | 8_3:+54936845 | Msa1296120:CDS |
| AAATAAGACCCAGAAGTTGA+AGG | 0.499068 | 8_3:-54935915 | None:intergenic |
| AGCAAGAAGCATATTTGGAC+TGG | 0.499364 | 8_3:+54937280 | Msa1296120:CDS |
| GGCAGTGTTGGAAGAAGAAG+TGG | 0.508158 | 8_3:+54935087 | Msa1296120:CDS |
| TGTTGGAAGAAGAAGTGGTT+AGG | 0.511515 | 8_3:+54935092 | Msa1296120:CDS |
| GGAGATTATCAGAACATGAA+AGG | 0.515426 | 8_3:+54935742 | Msa1296120:CDS |
| TAAATACCAATCCAACAACT+TGG | 0.518404 | 8_3:-54938340 | None:intergenic |
| CATCTATACAAGAAGAAGGA+AGG | 0.518813 | 8_3:+54935419 | Msa1296120:CDS |
| GAGATTATCAGAACATGAAA+GGG | 0.519637 | 8_3:+54935743 | Msa1296120:CDS |
| AGTTAAATGCCTTGAAGGAA+GGG | 0.523554 | 8_3:+54938440 | Msa1296120:CDS |
| TCCAGTCCAATAAAGAATCA+AGG | 0.524058 | 8_3:-54938380 | None:intergenic |
| ATCTATACAAGAAGAAGGAA+GGG | 0.524855 | 8_3:+54935420 | Msa1296120:CDS |
| TTCAGGTAGATAAGTTGAAG+AGG | 0.528029 | 8_3:+54934547 | Msa1296120:intron |
| TAAAATTCAGGTACCTACTT+GGG | 0.539959 | 8_3:+54936335 | Msa1296120:intron |
| GGAAAGCAGGAGAAGATGGA+AGG | 0.544627 | 8_3:+54934371 | Msa1296120:exon |
| GACATTGGAACTTCTAGCTG+AGG | 0.548247 | 8_3:+54935063 | Msa1296120:intron |
| GCTTTGAATTACTTCTCATG+TGG | 0.555149 | 8_3:-54935219 | None:intergenic |
| AAGCAGGAGAAGATGGAAGG+AGG | 0.556298 | 8_3:+54934374 | Msa1296120:exon |
| TGAGCTGATTCATGTTTGAG+TGG | 0.563105 | 8_3:-54935535 | None:intergenic |
| TTCTCATCTATACAAGAAGA+AGG | 0.568329 | 8_3:+54935415 | Msa1296120:CDS |
| TGTGAGAATTGGTACATCCA+AGG | 0.569116 | 8_3:+54935869 | Msa1296120:CDS |
| CAAGTTGTGAATTTCAGACA+AGG | 0.573745 | 8_3:+54935124 | Msa1296120:CDS |
| TCTATACAAGAAGAAGGAAG+GGG | 0.575452 | 8_3:+54935421 | Msa1296120:CDS |
| GGAAGATAAGGCGGAAGACG+AGG | 0.581353 | 8_3:-54934639 | None:intergenic |
| GTAACATTTGCACTTTCCTG+TGG | 0.584614 | 8_3:+54937320 | Msa1296120:CDS |
| GAAGCATATTTGGACTGGAA+TGG | 0.585611 | 8_3:+54937285 | Msa1296120:CDS |
| TGAATCAGCTCAGAAGTCCA+TGG | 0.591207 | 8_3:+54935546 | Msa1296120:CDS |
| GAAAGTGCAAATGTTACTAA+GGG | 0.594562 | 8_3:-54937314 | None:intergenic |
| AGGAGAAGATGGAAGGAGGA+GGG | 0.595319 | 8_3:+54934378 | Msa1296120:exon |
| TGTTCTGGTGAGATCAACAT+TGG | 0.595419 | 8_3:-54936048 | None:intergenic |
| ATACTTAGAACATGGCATAC+CGG | 0.606507 | 8_3:+54936809 | Msa1296120:CDS |
| AAATACCAATCCAACAACTT+GGG | 0.609275 | 8_3:-54938339 | None:intergenic |
| ATTGGAACTTCTAGCTGAGG+TGG | 0.610303 | 8_3:+54935066 | Msa1296120:CDS |
| CGATGACTTACTTCAATCTG+TGG | 0.611618 | 8_3:-54936091 | None:intergenic |
| TTACAAACTTAAGGTGATAG+GGG | 0.614980 | 8_3:-54937067 | None:intergenic |
| TTATTTCAGCCAATGTAGCA+AGG | 0.617147 | 8_3:+54935932 | Msa1296120:CDS |
| GGGTGAAGACCAACTTCCAC+AGG | 0.617768 | 8_3:-54937336 | None:intergenic |
| AGTGATTTATTAGTGTGTGG+TGG | 0.631231 | 8_3:+54938544 | Msa1296120:exon |
| AGAGAGAGACTAACATATGG+AGG | 0.635286 | 8_3:-54934660 | None:intergenic |
| GACACTGTCAATAATTACAG+TGG | 0.635952 | 8_3:+54935355 | Msa1296120:CDS |
| ACACTGTCAATAATTACAGT+GGG | 0.639622 | 8_3:+54935356 | Msa1296120:CDS |
| AATTTAATTCAATGACAACA+AGG | 0.640125 | 8_3:+54935272 | Msa1296120:CDS |
| CTGGCAAGAGAATTCTGTGG+TGG | 0.650669 | 8_3:-54935298 | None:intergenic |
| TTGTAGGCATACTTAGAACA+TGG | 0.651116 | 8_3:+54936801 | Msa1296120:intron |
| CAGGCAACAATAGTAGTAGG+AGG | 0.658457 | 8_3:+54936999 | Msa1296120:intron |
| ACATATGGAGGAAGATAAGG+CGG | 0.675886 | 8_3:-54934648 | None:intergenic |
| AGACGAGGCAAAGATCCCAA+AGG | 0.692046 | 8_3:-54934624 | None:intergenic |
| ATAAGTGATTTATTAGTGTG+TGG | 0.692057 | 8_3:+54938541 | Msa1296120:exon |
| CTTCTGGCAAGAGAATTCTG+TGG | 0.743682 | 8_3:-54935301 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTGGTTTAAATA+AGG | + | chr8_3:54938212-54938231 | Msa1296120:intron | 10.0% |
| !!! | AACATTATTTAATGTTTTTT+TGG | - | chr8_3:54938615-54938634 | None:intergenic | 10.0% |
| !! | AAAAAACATTAAATAATGTT+TGG | + | chr8_3:54938615-54938634 | Msa1296120:three_prime_UTR | 10.0% |
| !!! | TTTGTTTAATCTTTTTGTTT+TGG | + | chr8_3:54935703-54935722 | Msa1296120:intron | 15.0% |
| !! | ATTTCACATAAATTCTTATA+TGG | - | chr8_3:54936020-54936039 | None:intergenic | 15.0% |
| !! | AAGAATTTATGTGAAATTAA+AGG | + | chr8_3:54936023-54936042 | Msa1296120:CDS | 15.0% |
| !! | TTATCATCATTAAGTTTATT+TGG | - | chr8_3:54936655-54936674 | None:intergenic | 15.0% |
| !! | AATAAACTTAATGATGATAA+AGG | + | chr8_3:54936655-54936674 | Msa1296120:intron | 15.0% |
| !!! | GTTATCACTTTAAAATATTT+TGG | + | chr8_3:54936770-54936789 | Msa1296120:intron | 15.0% |
| !! | AAACTATAAAATCAAAAGAA+AGG | - | chr8_3:54937107-54937126 | None:intergenic | 15.0% |
| !! | GAAATAAAGATAGAAATTAA+GGG | - | chr8_3:54937216-54937235 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTACTTAAATCAA+TGG | + | chr8_3:54937395-54937414 | Msa1296120:intron | 15.0% |
| !!! | AATTAAATTTTGAGTGAAAT+AGG | - | chr8_3:54937944-54937963 | None:intergenic | 15.0% |
| !! | TAAATCACTTATTCATTAAT+TGG | - | chr8_3:54938533-54938552 | None:intergenic | 15.0% |
| !! | ATATACTAAATTCTTCGATT+AGG | - | chr8_3:54934686-54934705 | None:intergenic | 20.0% |
| !! | CGAAGAATTTAGTATATATT+TGG | + | chr8_3:54934689-54934708 | Msa1296120:intron | 20.0% |
| !!! | TTTTAGCTTCAATAAAATCA+CGG | - | chr8_3:54934878-54934897 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGAAGTTGATTTT+TGG | + | chr8_3:54935008-54935027 | Msa1296120:intron | 20.0% |
| !! | AATTTAATTCAATGACAACA+AGG | + | chr8_3:54935272-54935291 | Msa1296120:CDS | 20.0% |
| !! | TGTCAGTATAATTACAATAT+TGG | - | chr8_3:54936152-54936171 | None:intergenic | 20.0% |
| !!! | TAATCTTTTGTGTAAAATTC+AGG | + | chr8_3:54936323-54936342 | Msa1296120:intron | 20.0% |
| !!! | TATTTTGGTTTTCATATTGT+AGG | + | chr8_3:54936785-54936804 | Msa1296120:intron | 20.0% |
| !! | GGAAATAAAGATAGAAATTA+AGG | - | chr8_3:54937217-54937236 | None:intergenic | 20.0% |
| !!! | ACTTTTGGTATAATTATGTT+TGG | + | chr8_3:54937629-54937648 | Msa1296120:intron | 20.0% |
| !!! | AAGTTATTTTGACTTTACTT+CGG | - | chr8_3:54937685-54937704 | None:intergenic | 20.0% |
| !!! | GTTTTCCATTTTTTACTTTT+AGG | + | chr8_3:54937977-54937996 | Msa1296120:intron | 20.0% |
| !! | TTGATCCTAAAAGTAAAAAA+TGG | - | chr8_3:54937985-54938004 | None:intergenic | 20.0% |
| !! | AATAAATATGGATTTGTGTT+AGG | - | chr8_3:54938116-54938135 | None:intergenic | 20.0% |
| !! | ATTAAATTATATTGCACTGA+AGG | + | chr8_3:54938182-54938201 | Msa1296120:intron | 20.0% |
| !!! | AAGGAGCAATATTTTTTTTT+TGG | + | chr8_3:54938201-54938220 | Msa1296120:intron | 20.0% |
| !!! | TGGATATTTTTTTTGTACAA+TGG | + | chr8_3:54938564-54938583 | Msa1296120:three_prime_UTR | 20.0% |
| !!! | TGAAAAATCACATGTATTTT+TGG | + | chr8_3:54938665-54938684 | Msa1296120:three_prime_UTR | 20.0% |
| !! | AAATGTAGCTTTTATCTATG+TGG | + | chr8_3:54934897-54934916 | Msa1296120:intron | 25.0% |
| !!! | TGTGTTATTGTTTTAGACAT+TGG | + | chr8_3:54935048-54935067 | Msa1296120:intron | 25.0% |
| !! | AATAGGGTCATTCAAATTTT+CGG | - | chr8_3:54935191-54935210 | None:intergenic | 25.0% |
| ! | AATAATTACAGTGGGAATAA+TGG | + | chr8_3:54935364-54935383 | Msa1296120:CDS | 25.0% |
| ! | ATAATTACAGTGGGAATAAT+GGG | + | chr8_3:54935365-54935384 | Msa1296120:CDS | 25.0% |
| !! | AGTTTAGATATTTTCTTCAC+TGG | - | chr8_3:54935493-54935512 | None:intergenic | 25.0% |
| !!! | CTATTTTAAACTATGAAGCA+CGG | - | chr8_3:54935644-54935663 | None:intergenic | 25.0% |
| ! | TCTAACATATTTGTGAGAAT+TGG | + | chr8_3:54935858-54935877 | Msa1296120:CDS | 25.0% |
| ! | TCATCATTAAGTTTATTTGG+CGG | - | chr8_3:54936652-54936671 | None:intergenic | 25.0% |
| ! | TTTAAAAAAACCGAACCAAA+TGG | - | chr8_3:54936706-54936725 | None:intergenic | 25.0% |
| ! | ATTGACCTATTACAATTTCA+GGG | - | chr8_3:54937506-54937525 | None:intergenic | 25.0% |
| ! | ATGTTTGGTAAAAAAAACCT+AGG | + | chr8_3:54937644-54937663 | Msa1296120:intron | 25.0% |
| !! | TTGTGTGTGATAATTTTGTT+GGG | - | chr8_3:54937711-54937730 | None:intergenic | 25.0% |
| !! | ATTGTGTGTGATAATTTTGT+TGG | - | chr8_3:54937712-54937731 | None:intergenic | 25.0% |
| ! | TTGCTAATTCGTAAAATTCA+AGG | + | chr8_3:54937873-54937892 | Msa1296120:intron | 25.0% |
| ! | TAATTCGTAAAATTCAAGGA+TGG | + | chr8_3:54937877-54937896 | Msa1296120:intron | 25.0% |
| !!! | TTTTTGGTTTAAATAAGGTG+AGG | + | chr8_3:54938217-54938236 | Msa1296120:intron | 25.0% |
| !!! | TTTTGGTTTAAATAAGGTGA+GGG | + | chr8_3:54938218-54938237 | Msa1296120:intron | 25.0% |
| ! | GATTATTTACAAGCTTCAAT+TGG | + | chr8_3:54938288-54938307 | Msa1296120:CDS | 25.0% |
| !! | GTATTTACTAGATTTTGCAA+AGG | + | chr8_3:54938356-54938375 | Msa1296120:CDS | 25.0% |
| !! | TTCTTATTTCATCAGGTAAT+TGG | - | chr8_3:54938413-54938432 | None:intergenic | 25.0% |
| ! | AACCTGAAACTAAAATCATA+AGG | - | chr8_3:54938501-54938520 | None:intergenic | 25.0% |
| ! | ATAAGTGATTTATTAGTGTG+TGG | + | chr8_3:54938541-54938560 | Msa1296120:exon | 25.0% |
| !!! | TTTTTCAGAAATGTGTCATA+GGG | - | chr8_3:54938652-54938671 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGAAATGTGTCAT+AGG | - | chr8_3:54938653-54938672 | None:intergenic | 25.0% |
| !!! | TAGTGATGTTTTGAAAGCTT+TGG | + | chr8_3:54934523-54934542 | Msa1296120:intron | 30.0% |
| ! | AATTACTTCTCATGTGGTTT+TGG | - | chr8_3:54935216-54935235 | None:intergenic | 30.0% |
| ACACTGTCAATAATTACAGT+GGG | + | chr8_3:54935356-54935375 | Msa1296120:CDS | 30.0% | |
| TTCTCATCTATACAAGAAGA+AGG | + | chr8_3:54935415-54935434 | Msa1296120:CDS | 30.0% | |
| ATCTATACAAGAAGAAGGAA+GGG | + | chr8_3:54935420-54935439 | Msa1296120:CDS | 30.0% | |
| TTGAGTGGAGATTTCTTTAA+AGG | - | chr8_3:54935523-54935542 | None:intergenic | 30.0% | |
| AGGTAATTACACTTATGTGT+CGG | + | chr8_3:54935584-54935603 | Msa1296120:intron | 30.0% | |
| GAGATTATCAGAACATGAAA+GGG | + | chr8_3:54935743-54935762 | Msa1296120:CDS | 30.0% | |
| !! | AGATCTTCTGAAACTCTATT+TGG | - | chr8_3:54935825-54935844 | None:intergenic | 30.0% |
| TACATCCAAGGAAAAATTTG+TGG | + | chr8_3:54935881-54935900 | Msa1296120:CDS | 30.0% | |
| ! | TGATTCCACAAATTTTTCCT+TGG | - | chr8_3:54935889-54935908 | None:intergenic | 30.0% |
| GATTCTGAACAGATATCATA+AGG | - | chr8_3:54935978-54935997 | None:intergenic | 30.0% | |
| !! | AAACATTGCATTTGTTGTTC+TGG | - | chr8_3:54936066-54936085 | None:intergenic | 30.0% |
| TAAAATTCAGGTACCTACTT+GGG | + | chr8_3:54936335-54936354 | Msa1296120:intron | 30.0% | |
| ! | AGAATGCAAGTTTTTCTTGA+TGG | - | chr8_3:54936393-54936412 | None:intergenic | 30.0% |
| ATCAAGAAAAACTTGCATTC+TGG | + | chr8_3:54936392-54936411 | Msa1296120:CDS | 30.0% | |
| ATTAATGCTACAACCATTTC+CGG | - | chr8_3:54936840-54936859 | None:intergenic | 30.0% | |
| TTACAAACTTAAGGTGATAG+GGG | - | chr8_3:54937070-54937089 | None:intergenic | 30.0% | |
| CTTACAAACTTAAGGTGATA+GGG | - | chr8_3:54937071-54937090 | None:intergenic | 30.0% | |
| ACTTACAAACTTAAGGTGAT+AGG | - | chr8_3:54937072-54937091 | None:intergenic | 30.0% | |
| ATTGTGGACTTACAAACTTA+AGG | - | chr8_3:54937079-54937098 | None:intergenic | 30.0% | |
| CAAAAGAAAGGACAAAATTG+TGG | - | chr8_3:54937095-54937114 | None:intergenic | 30.0% | |
| ! | GTTAATTGCAACATGCTTTT+AGG | - | chr8_3:54937189-54937208 | None:intergenic | 30.0% |
| !!! | TCATCATTTTTTGCAGCTTT+TGG | - | chr8_3:54937254-54937273 | None:intergenic | 30.0% |
| ! | GAAAGTGCAAATGTTACTAA+GGG | - | chr8_3:54937317-54937336 | None:intergenic | 30.0% |
| TAAAGTTGAGAAACATACTG+CGG | - | chr8_3:54937360-54937379 | None:intergenic | 30.0% | |
| !!! | AGCACAGTACTCTTTTTTTT+TGG | + | chr8_3:54937426-54937445 | Msa1296120:intron | 30.0% |
| TTTGTCCCTGAAATTGTAAT+AGG | + | chr8_3:54937498-54937517 | Msa1296120:intron | 30.0% | |
| GATTGACCTATTACAATTTC+AGG | - | chr8_3:54937507-54937526 | None:intergenic | 30.0% | |
| ACATAACATTGTCTAACAGA+AGG | - | chr8_3:54937538-54937557 | None:intergenic | 30.0% | |
| ! | CAATGGACGAAATTAACTTT+TGG | + | chr8_3:54937614-54937633 | Msa1296120:intron | 30.0% |
| GGAAATAAAAAGTAACTCCT+AGG | - | chr8_3:54937664-54937683 | None:intergenic | 30.0% | |
| TGCTACATCTTCATTTAATG+TGG | + | chr8_3:54937775-54937794 | Msa1296120:intron | 30.0% | |
| AGTTTAGCTATTAGACAACA+TGG | - | chr8_3:54937805-54937824 | None:intergenic | 30.0% | |
| ! | AACCTAACTTCCTAAACTTT+TGG | - | chr8_3:54938072-54938091 | None:intergenic | 30.0% |
| TAGGAAGTTAGGTTAATGAA+TGG | + | chr8_3:54938078-54938097 | Msa1296120:intron | 30.0% | |
| CCACATGCAGAAAATAAATA+TGG | - | chr8_3:54938128-54938147 | None:intergenic | 30.0% | |
| !! | CCATATTTATTTTCTGCATG+TGG | + | chr8_3:54938125-54938144 | Msa1296120:intron | 30.0% |
| AAATACCAATCCAACAACTT+GGG | - | chr8_3:54938342-54938361 | None:intergenic | 30.0% | |
| TAAATACCAATCCAACAACT+TGG | - | chr8_3:54938343-54938362 | None:intergenic | 30.0% | |
| AAAGGACCTTGATTCTTTAT+TGG | + | chr8_3:54938374-54938393 | Msa1296120:CDS | 30.0% | |
| !!! | AGCCTTATGATTTTAGTTTC+AGG | + | chr8_3:54938496-54938515 | Msa1296120:CDS | 30.0% |
| !!! | GTTTTGAAAGCTTTGGTTTC+AGG | + | chr8_3:54934530-54934549 | Msa1296120:intron | 35.0% |
| ! | TTCAGGTAGATAAGTTGAAG+AGG | + | chr8_3:54934547-54934566 | Msa1296120:intron | 35.0% |
| !! | AAGAGCATTTACAAGACCTT+TGG | + | chr8_3:54934608-54934627 | Msa1296120:CDS | 35.0% |
| ! | AGAGCATTTACAAGACCTTT+GGG | + | chr8_3:54934609-54934628 | Msa1296120:CDS | 35.0% |
| CTAACATATGGAGGAAGATA+AGG | - | chr8_3:54934654-54934673 | None:intergenic | 35.0% | |
| TGAGTTTGACAAAACCAAAG+TGG | + | chr8_3:54934850-54934869 | Msa1296120:intron | 35.0% | |
| CTCATTGTCAGATGCATATT+TGG | - | chr8_3:54934945-54934964 | None:intergenic | 35.0% | |
| CAAGTTGTGAATTTCAGACA+AGG | + | chr8_3:54935124-54935143 | Msa1296120:CDS | 35.0% | |
| !!! | TCATGTGGTTTTGGTCAATA+GGG | - | chr8_3:54935207-54935226 | None:intergenic | 35.0% |
| ! | GCTTTGAATTACTTCTCATG+TGG | - | chr8_3:54935222-54935241 | None:intergenic | 35.0% |
| CTGTAATTATTGACAGTGTC+AGG | - | chr8_3:54935355-54935374 | None:intergenic | 35.0% | |
| GACACTGTCAATAATTACAG+TGG | + | chr8_3:54935355-54935374 | Msa1296120:CDS | 35.0% | |
| CATCTATACAAGAAGAAGGA+AGG | + | chr8_3:54935419-54935438 | Msa1296120:CDS | 35.0% | |
| TCTATACAAGAAGAAGGAAG+GGG | + | chr8_3:54935421-54935440 | Msa1296120:CDS | 35.0% | |
| CTGCAACTTTAATTGATCCA+TGG | - | chr8_3:54935566-54935585 | None:intergenic | 35.0% | |
| CATGGATCAATTAAAGTTGC+AGG | + | chr8_3:54935564-54935583 | Msa1296120:CDS | 35.0% | |
| GGTAATTACACTTATGTGTC+GGG | + | chr8_3:54935585-54935604 | Msa1296120:intron | 35.0% | |
| GTAATTACACTTATGTGTCG+GGG | + | chr8_3:54935586-54935605 | Msa1296120:intron | 35.0% | |
| GGAGATTATCAGAACATGAA+AGG | + | chr8_3:54935742-54935761 | Msa1296120:CDS | 35.0% | |
| ATTATCTGCTGGTGAATTTG+AGG | - | chr8_3:54935778-54935797 | None:intergenic | 35.0% | |
| TCTGACACTTTATTATCTGC+TGG | - | chr8_3:54935789-54935808 | None:intergenic | 35.0% | |
| TCAAAAACACCTTCAACTTC+TGG | + | chr8_3:54935906-54935925 | Msa1296120:CDS | 35.0% | |
| CAAAAACACCTTCAACTTCT+GGG | + | chr8_3:54935907-54935926 | Msa1296120:CDS | 35.0% | |
| AAATAAGACCCAGAAGTTGA+AGG | - | chr8_3:54935918-54935937 | None:intergenic | 35.0% | |
| TTATTTCAGCCAATGTAGCA+AGG | + | chr8_3:54935932-54935951 | Msa1296120:CDS | 35.0% | |
| ! | GATCTTTTTCCTTGCTACAT+TGG | - | chr8_3:54935944-54935963 | None:intergenic | 35.0% |
| GAATCCAAAACAAGAGAAGT+TGG | + | chr8_3:54935993-54936012 | Msa1296120:CDS | 35.0% | |
| TTGAATATAACCAGACGTGT+CGG | + | chr8_3:54936214-54936233 | Msa1296120:intron | 35.0% | |
| CTTTAGATTGAAGATGTGTC+TGG | - | chr8_3:54936249-54936268 | None:intergenic | 35.0% | |
| TCGTGTTAGTTACTAACTGT+TGG | + | chr8_3:54936271-54936290 | Msa1296120:intron | 35.0% | |
| GTAAAATTCAGGTACCTACT+TGG | + | chr8_3:54936334-54936353 | Msa1296120:intron | 35.0% | |
| ACTTGCTTCTTTGAACTTGA+AGG | + | chr8_3:54936360-54936379 | Msa1296120:CDS | 35.0% | |
| CTTGCTTCTTTGAACTTGAA+GGG | + | chr8_3:54936361-54936380 | Msa1296120:CDS | 35.0% | |
| GGTAAATCATTGTGACAGAA+AGG | - | chr8_3:54936456-54936475 | None:intergenic | 35.0% | |
| CACACCTATAATTACAATGC+CGG | + | chr8_3:54936475-54936494 | Msa1296120:intron | 35.0% | |
| TAGTCCGGCATTGTAATTAT+AGG | - | chr8_3:54936482-54936501 | None:intergenic | 35.0% | |
| ATAGACCAAACTCTTTAGTC+CGG | - | chr8_3:54936497-54936516 | None:intergenic | 35.0% | |
| TTACAGTTCAATGTCTGGTT+CGG | - | chr8_3:54936568-54936587 | None:intergenic | 35.0% | |
| ACATTGAACTGTAAGTCCTT+TGG | + | chr8_3:54936574-54936593 | Msa1296120:intron | 35.0% | |
| ACGGTTGAACTATTATCCAA+AGG | - | chr8_3:54936593-54936612 | None:intergenic | 35.0% | |
| !!! | GTTTGATAGTAGTTTTGTCC+CGG | - | chr8_3:54936630-54936649 | None:intergenic | 35.0% |
| AGGCAGATTCAAAGTTCAAT+CGG | + | chr8_3:54936675-54936694 | Msa1296120:intron | 35.0% | |
| !!! | GGTTCGGTTTTTTTAAACAC+CGG | + | chr8_3:54936709-54936728 | Msa1296120:intron | 35.0% |
| CTCTTGACTGCAAGAATATT+TGG | - | chr8_3:54936751-54936770 | None:intergenic | 35.0% | |
| TTGTAGGCATACTTAGAACA+TGG | + | chr8_3:54936801-54936820 | Msa1296120:intron | 35.0% | |
| ATACTTAGAACATGGCATAC+CGG | + | chr8_3:54936809-54936828 | Msa1296120:CDS | 35.0% | |
| GGTTGTAGCATTAATGCAAA+AGG | + | chr8_3:54936845-54936864 | Msa1296120:CDS | 35.0% | |
| TTTCAGGCAACAATAGTAGT+AGG | + | chr8_3:54936996-54937015 | Msa1296120:intron | 35.0% | |
| ! | GTGAAAGCAAGAAGCATATT+TGG | + | chr8_3:54937275-54937294 | Msa1296120:CDS | 35.0% |
| ! | GGAAAGTGCAAATGTTACTA+AGG | - | chr8_3:54937318-54937337 | None:intergenic | 35.0% |
| AAAGTTGAGAAACATACTGC+GGG | - | chr8_3:54937359-54937378 | None:intergenic | 35.0% | |
| TAATTTCGTCCATTGAGACT+TGG | - | chr8_3:54937609-54937628 | None:intergenic | 35.0% | |
| ! | CAATTTTGTCACTAGAGATG+TGG | + | chr8_3:54937728-54937747 | Msa1296120:intron | 35.0% |
| TTGTCACGCATCAATCAAAA+TGG | - | chr8_3:54937839-54937858 | None:intergenic | 35.0% | |
| !! | GATGGATTTGATTTGACTAG+TGG | + | chr8_3:54937895-54937914 | Msa1296120:intron | 35.0% |
| TGCCAAAAGTTTAGGAAGTT+AGG | + | chr8_3:54938067-54938086 | Msa1296120:intron | 35.0% | |
| GATACTAATTCCCAAGTTGT+TGG | + | chr8_3:54938329-54938348 | Msa1296120:CDS | 35.0% | |
| TAATTCCCAAGTTGTTGGAT+TGG | + | chr8_3:54938334-54938353 | Msa1296120:CDS | 35.0% | |
| ACCTTGATTCTTTATTGGAC+TGG | + | chr8_3:54938379-54938398 | Msa1296120:CDS | 35.0% | |
| TCCAGTCCAATAAAGAATCA+AGG | - | chr8_3:54938383-54938402 | None:intergenic | 35.0% | |
| ! | GCTTGGTTTCTTATTTCATC+AGG | - | chr8_3:54938420-54938439 | None:intergenic | 35.0% |
| AGTTAAATGCCTTGAAGGAA+GGG | + | chr8_3:54938440-54938459 | Msa1296120:CDS | 35.0% | |
| AAGTGAGTCTCTTTCACAAA+TGG | + | chr8_3:54938464-54938483 | Msa1296120:CDS | 35.0% | |
| AGTGATTTATTAGTGTGTGG+TGG | + | chr8_3:54938544-54938563 | Msa1296120:exon | 35.0% | |
| ! | TTGGAAGTGTACTTCGAATA+TGG | + | chr8_3:54938684-54938703 | Msa1296120:three_prime_UTR | 35.0% |
| GGGAGCAAAGGAATGAAAAA+TGG | + | chr8_3:54934398-54934417 | Msa1296120:CDS | 40.0% | |
| ACATATGGAGGAAGATAAGG+CGG | - | chr8_3:54934651-54934670 | None:intergenic | 40.0% | |
| AGAGAGAGACTAACATATGG+AGG | - | chr8_3:54934663-54934682 | None:intergenic | 40.0% | |
| AGGAGAGAGAGACTAACATA+TGG | - | chr8_3:54934666-54934685 | None:intergenic | 40.0% | |
| ACAGTGAGTTTGACGAAATC+AGG | + | chr8_3:54934716-54934735 | Msa1296120:intron | 40.0% | |
| AGCGTGCATGTTTGAATTGA+CGG | - | chr8_3:54934816-54934835 | None:intergenic | 40.0% | |
| !! | ATAAAATCACGGTGCCACTT+TGG | - | chr8_3:54934867-54934886 | None:intergenic | 40.0% |
| ATTTGGATTCGCGACGAATT+TGG | - | chr8_3:54934928-54934947 | None:intergenic | 40.0% | |
| TGTTGGAAGAAGAAGTGGTT+AGG | + | chr8_3:54935092-54935111 | Msa1296120:CDS | 40.0% | |
| !!! | CTCATGTGGTTTTGGTCAAT+AGG | - | chr8_3:54935208-54935227 | None:intergenic | 40.0% |
| ! | TGAGCTGATTCATGTTTGAG+TGG | - | chr8_3:54935538-54935557 | None:intergenic | 40.0% |
| !!! | TTTGTTTTGGTTGCCTTAGC+TGG | + | chr8_3:54935716-54935735 | Msa1296120:intron | 40.0% |
| GATAATCTCCATTCCAGCTA+AGG | - | chr8_3:54935732-54935751 | None:intergenic | 40.0% | |
| TGTGAGAATTGGTACATCCA+AGG | + | chr8_3:54935869-54935888 | Msa1296120:CDS | 40.0% | |
| !! | TGGACCAACTTCTCTTGTTT+TGG | - | chr8_3:54936000-54936019 | None:intergenic | 40.0% |
| TGTTCTGGTGAGATCAACAT+TGG | - | chr8_3:54936051-54936070 | None:intergenic | 40.0% | |
| CGATGACTTACTTCAATCTG+TGG | - | chr8_3:54936094-54936113 | None:intergenic | 40.0% | |
| TCTCTTTGCTAGTGTTTCAC+AGG | - | chr8_3:54936129-54936148 | None:intergenic | 40.0% | |
| AAGAAGCAAGTTTCCCAAGT+AGG | - | chr8_3:54936351-54936370 | None:intergenic | 40.0% | |
| CGGCATTGTAATTATAGGTG+TGG | - | chr8_3:54936477-54936496 | None:intergenic | 40.0% | |
| AGGACTTACAGTTCAATGTC+TGG | - | chr8_3:54936573-54936592 | None:intergenic | 40.0% | |
| !! | ACCGTTTTAAACTTCCGAAC+CGG | + | chr8_3:54936608-54936627 | Msa1296120:intron | 40.0% |
| !!! | ATAGTAGTTTTGTCCCGGTT+CGG | - | chr8_3:54936625-54936644 | None:intergenic | 40.0% |
| GTTCAATCGGTTGAACCATT+TGG | + | chr8_3:54936688-54936707 | Msa1296120:intron | 40.0% | |
| ATCGGTTGAACCATTTGGTT+CGG | + | chr8_3:54936693-54936712 | Msa1296120:intron | 40.0% | |
| TGGCAAGCTAAGATTTCATC+CGG | - | chr8_3:54936731-54936750 | None:intergenic | 40.0% | |
| CTTCTGACAATGCATGTTTC+AGG | + | chr8_3:54936980-54936999 | Msa1296120:intron | 40.0% | |
| ! | CTTTTGGACATGTCTGTTGA+TGG | - | chr8_3:54937238-54937257 | None:intergenic | 40.0% |
| ! | AGCAAGAAGCATATTTGGAC+TGG | + | chr8_3:54937280-54937299 | Msa1296120:CDS | 40.0% |
| ! | GAAGCATATTTGGACTGGAA+TGG | + | chr8_3:54937285-54937304 | Msa1296120:CDS | 40.0% |
| GTAACATTTGCACTTTCCTG+TGG | + | chr8_3:54937320-54937339 | Msa1296120:CDS | 40.0% | |
| ! | CCTAAACTTTTGGCAGAGTT+TGG | - | chr8_3:54938062-54938081 | None:intergenic | 40.0% |
| CCAAACTCTGCCAAAAGTTT+AGG | + | chr8_3:54938059-54938078 | Msa1296120:intron | 40.0% | |
| ! | CTTCAAGGCATTTAACTGCT+TGG | - | chr8_3:54938437-54938456 | None:intergenic | 40.0% |
| CAAGCAGTTAAATGCCTTGA+AGG | + | chr8_3:54938435-54938454 | Msa1296120:CDS | 40.0% | |
| CAGTTAAATGCCTTGAAGGA+AGG | + | chr8_3:54938439-54938458 | Msa1296120:CDS | 40.0% | |
| ATGTGGAAAGCAGGAGAAGA+TGG | + | chr8_3:54934367-54934386 | Msa1296120:exon | 45.0% | |
| ! | GACATTGGAACTTCTAGCTG+AGG | + | chr8_3:54935063-54935082 | Msa1296120:intron | 45.0% |
| ! | ATTGGAACTTCTAGCTGAGG+TGG | + | chr8_3:54935066-54935085 | Msa1296120:CDS | 45.0% |
| CTTCTGGCAAGAGAATTCTG+TGG | - | chr8_3:54935304-54935323 | None:intergenic | 45.0% | |
| !! | CTTTCTGCTAGAAGCACTTC+TGG | - | chr8_3:54935320-54935339 | None:intergenic | 45.0% |
| TGAATCAGCTCAGAAGTCCA+TGG | + | chr8_3:54935546-54935565 | Msa1296120:CDS | 45.0% | |
| TTTGGTTGCCTTAGCTGGAA+TGG | + | chr8_3:54935721-54935740 | Msa1296120:intron | 45.0% | |
| CAATGCCGGACTAAAGAGTT+TGG | + | chr8_3:54936489-54936508 | Msa1296120:intron | 45.0% | |
| !! | CCCGGTTCGGAAGTTTAAAA+CGG | - | chr8_3:54936612-54936631 | None:intergenic | 45.0% |
| !! | CCGTTTTAAACTTCCGAACC+GGG | + | chr8_3:54936609-54936628 | Msa1296120:intron | 45.0% |
| ACAACCATTTCCGGACTTTC+CGG | - | chr8_3:54936831-54936850 | None:intergenic | 45.0% | |
| CAGGCAACAATAGTAGTAGG+AGG | + | chr8_3:54936999-54937018 | Msa1296120:intron | 45.0% | |
| TTGCACTTTCCTGTGGAAGT+TGG | + | chr8_3:54937327-54937346 | Msa1296120:CDS | 45.0% | |
| ATTGAGACTTGGCAGTGATG+TGG | - | chr8_3:54937598-54937617 | None:intergenic | 45.0% | |
| ACATCACTGCCAAGTCTCAA+TGG | + | chr8_3:54937597-54937616 | Msa1296120:intron | 45.0% | |
| ACTCACTTTCCCTTCCTTCA+AGG | - | chr8_3:54938452-54938471 | None:intergenic | 45.0% | |
| GGAAAGCAGGAGAAGATGGA+AGG | + | chr8_3:54934371-54934390 | Msa1296120:exon | 50.0% | |
| AAGCAGGAGAAGATGGAAGG+AGG | + | chr8_3:54934374-54934393 | Msa1296120:exon | 50.0% | |
| AGGAGAAGATGGAAGGAGGA+GGG | + | chr8_3:54934378-54934397 | Msa1296120:exon | 50.0% | |
| AGACGAGGCAAAGATCCCAA+AGG | - | chr8_3:54934627-54934646 | None:intergenic | 50.0% | |
| ! | GGCAGTGTTGGAAGAAGAAG+TGG | + | chr8_3:54935087-54935106 | Msa1296120:CDS | 50.0% |
| CTGGCAAGAGAATTCTGTGG+TGG | - | chr8_3:54935301-54935320 | None:intergenic | 50.0% | |
| CACTGGACACGCCTAATCTA+AGG | + | chr8_3:54935613-54935632 | Msa1296120:intron | 50.0% | |
| GCACGGACACTCCTTAGATT+AGG | - | chr8_3:54935627-54935646 | None:intergenic | 50.0% | |
| TGACACTGACACGCAGACAT+CGG | + | chr8_3:54936167-54936186 | Msa1296120:intron | 50.0% | |
| ! | ATAACCAGACGTGTCGGTGT+TGG | + | chr8_3:54936220-54936239 | Msa1296120:intron | 50.0% |
| ACATGGCATACCGGAAAGTC+CGG | + | chr8_3:54936818-54936837 | Msa1296120:CDS | 50.0% | |
| CATACCGGAAAGTCCGGAAA+TGG | + | chr8_3:54936824-54936843 | Msa1296120:CDS | 50.0% | |
| ! | CTAGAGATGTGGTAGCGATG+TGG | + | chr8_3:54937739-54937758 | Msa1296120:intron | 50.0% |
| CAGGAGAAGATGGAAGGAGG+AGG | + | chr8_3:54934377-54934396 | Msa1296120:exon | 55.0% | |
| ATGGAAGGAGGAGGGAGCAA+AGG | + | chr8_3:54934386-54934405 | Msa1296120:CDS | 55.0% | |
| GGAAGATAAGGCGGAAGACG+AGG | - | chr8_3:54934642-54934661 | None:intergenic | 55.0% | |
| TCTAGCTGAGGTGGCAGTGT+TGG | + | chr8_3:54935075-54935094 | Msa1296120:CDS | 55.0% | |
| TTATGTGTCGGGGTCGACAC+TGG | + | chr8_3:54935596-54935615 | Msa1296120:intron | 55.0% | |
| GGGTGAAGACCAACTTCCAC+AGG | - | chr8_3:54937339-54937358 | None:intergenic | 55.0% | |
| GCAGTGATGTGGAGTTCACG+TGG | - | chr8_3:54937587-54937606 | None:intergenic | 55.0% | |
| GTAGCGATGTGGAGTCTGCA+CGG | + | chr8_3:54937750-54937769 | Msa1296120:intron | 55.0% | |
| GTGTCCAACACCGACACGTC+TGG | - | chr8_3:54936227-54936246 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 54934364 | 54938773 | 54934364 | ID=Msa1296120;Name=Msa1296120 |
| chr8_3 | mRNA | 54934364 | 54938773 | 54934364 | ID=Msa1296120-mRNA-1;Parent=Msa1296120;Name=Msa1296120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=22|1|1|1|1|1|9|225|586 |
| chr8_3 | exon | 54934364 | 54934463 | 54934364 | ID=Msa1296120-mRNA-1:exon:15759;Parent=Msa1296120-mRNA-1 |
| chr8_3 | exon | 54934552 | 54934668 | 54934552 | ID=Msa1296120-mRNA-1:exon:15760;Parent=Msa1296120-mRNA-1 |
| chr8_3 | exon | 54935064 | 54935585 | 54935064 | ID=Msa1296120-mRNA-1:exon:15761;Parent=Msa1296120-mRNA-1 |
| chr8_3 | exon | 54935735 | 54936102 | 54935735 | ID=Msa1296120-mRNA-1:exon:15762;Parent=Msa1296120-mRNA-1 |
| chr8_3 | exon | 54936345 | 54936444 | 54936345 | ID=Msa1296120-mRNA-1:exon:15763;Parent=Msa1296120-mRNA-1 |
| chr8_3 | exon | 54936807 | 54936866 | 54936807 | ID=Msa1296120-mRNA-1:exon:15764;Parent=Msa1296120-mRNA-1 |
| chr8_3 | exon | 54937002 | 54937085 | 54937002 | ID=Msa1296120-mRNA-1:exon:15765;Parent=Msa1296120-mRNA-1 |
| chr8_3 | exon | 54937245 | 54937361 | 54937245 | ID=Msa1296120-mRNA-1:exon:15766;Parent=Msa1296120-mRNA-1 |
| chr8_3 | exon | 54938234 | 54938773 | 54938234 | ID=Msa1296120-mRNA-1:exon:15767;Parent=Msa1296120-mRNA-1 |
| chr8_3 | five_prime_UTR | 54934364 | 54934385 | 54934364 | ID=Msa1296120-mRNA-1:five_prime_utr;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54934386 | 54934463 | 54934386 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54934552 | 54934668 | 54934552 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54935064 | 54935585 | 54935064 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54935735 | 54936102 | 54935735 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54936345 | 54936444 | 54936345 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54936807 | 54936866 | 54936807 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54937002 | 54937085 | 54937002 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54937245 | 54937361 | 54937245 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | CDS | 54938234 | 54938548 | 54938234 | ID=Msa1296120-mRNA-1:cds;Parent=Msa1296120-mRNA-1 |
| chr8_3 | three_prime_UTR | 54938549 | 54938773 | 54938549 | ID=Msa1296120-mRNA-1:three_prime_utr;Parent=Msa1296120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
