Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255900 | XP_003629592.1 | 89.504 | 343 | 8 | 1 | 1 | 315 | 255 | 597 | 0.0 | 625 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0017510 | Msa1255900 | 0.801976 | 6.982833e-49 | -8.615850e-47 |
Msa0145670 | Msa1255900 | 0.804691 | 1.912706e-49 | -8.615850e-47 |
Msa0157290 | Msa1255900 | 0.801146 | 1.033025e-48 | -8.615850e-47 |
Msa1242240 | Msa1255900 | 0.800780 | 1.227146e-48 | -8.615850e-47 |
Msa1255900 | Msa1264020 | 0.821390 | 4.142401e-53 | -8.615850e-47 |
Msa1255900 | Msa1271290 | 0.805235 | 1.472017e-49 | -8.615850e-47 |
Msa1255900 | Msa1280420 | 0.811298 | 7.510027e-51 | -8.615850e-47 |
Msa1255900 | Msa1296120 | 0.886879 | 2.328557e-72 | -8.615850e-47 |
Msa1255900 | Msa1308380 | 0.808760 | 2.643405e-50 | -8.615850e-47 |
Msa1255900 | Msa1328320 | 0.886142 | 4.421784e-72 | -8.615850e-47 |
Msa1255900 | Msa1328350 | 0.870168 | 1.789331e-66 | -8.615850e-47 |
Msa1255900 | Msa1367080 | 0.824276 | 8.809151e-54 | -8.615850e-47 |
Msa1255900 | Msa1427760 | 0.806126 | 9.572301e-50 | -8.615850e-47 |
Msa1040120 | Msa1255900 | 0.830341 | 3.100873e-55 | -8.615850e-47 |
Msa0261340 | Msa1255900 | 0.800830 | 1.199080e-48 | -8.615850e-47 |
Msa0312690 | Msa1255900 | -0.803249 | 3.815593e-49 | -8.615850e-47 |
Msa0316160 | Msa1255900 | -0.807370 | 5.225469e-50 | -8.615850e-47 |
Msa1128160 | Msa1255900 | 0.809430 | 1.899400e-50 | -8.615850e-47 |
Msa1165360 | Msa1255900 | 0.811766 | 5.940876e-51 | -8.615850e-47 |
Msa1203490 | Msa1255900 | 0.882626 | 8.897649e-71 | -8.615850e-47 |
Msa1222970 | Msa1255900 | 0.825882 | 3.679381e-54 | -8.615850e-47 |
Msa0581760 | Msa1255900 | 0.819525 | 1.109519e-52 | -8.615850e-47 |
Msa0959360 | Msa1255900 | 0.803190 | 3.922905e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255900 | MtrunA17_Chr8g0374741 | 89.504 | 343 | 8 | 1 | 1 | 315 | 255 | 597 | 0.0 | 625 |
Msa1255900 | MtrunA17_Chr5g0402501 | 65.598 | 343 | 70 | 3 | 1 | 315 | 224 | 546 | 3.88e-157 | 450 |
Msa1255900 | MtrunA17_Chr1g0153951 | 54.321 | 324 | 119 | 2 | 18 | 313 | 223 | 545 | 1.72e-118 | 352 |
Msa1255900 | MtrunA17_Chr3g0133631 | 51.327 | 339 | 111 | 6 | 10 | 313 | 249 | 568 | 1.12e-106 | 322 |
Msa1255900 | MtrunA17_Chr5g0435281 | 36.612 | 366 | 165 | 7 | 12 | 313 | 147 | 509 | 1.51e-68 | 222 |
Msa1255900 | MtrunA17_Chr4g0028651 | 38.123 | 341 | 153 | 10 | 30 | 313 | 354 | 693 | 7.53e-61 | 205 |
Msa1255900 | MtrunA17_Chr5g0399331 | 27.844 | 334 | 213 | 7 | 8 | 313 | 242 | 575 | 8.62e-43 | 155 |
Msa1255900 | MtrunA17_Chr8g0373901 | 30.539 | 334 | 179 | 5 | 26 | 313 | 294 | 620 | 1.34e-39 | 147 |
Msa1255900 | MtrunA17_Chr5g0403231 | 30.769 | 338 | 170 | 8 | 30 | 313 | 291 | 618 | 6.40e-38 | 142 |
Msa1255900 | MtrunA17_Chr4g0034351 | 29.830 | 352 | 191 | 10 | 10 | 313 | 269 | 612 | 9.99e-35 | 133 |
Msa1255900 | MtrunA17_Chr3g0115381 | 34.392 | 189 | 110 | 6 | 83 | 263 | 532 | 714 | 2.31e-20 | 91.7 |
Msa1255900 | MtrunA17_Chr1g0163291 | 28.643 | 199 | 124 | 8 | 83 | 272 | 376 | 565 | 9.08e-13 | 68.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1255900 | AT4G37080.2 | 58.721 | 344 | 90 | 3 | 1 | 315 | 290 | 610 | 1.92e-141 | 412 |
Msa1255900 | AT4G37080.3 | 58.721 | 344 | 90 | 3 | 1 | 315 | 290 | 610 | 1.92e-141 | 412 |
Msa1255900 | AT4G37080.1 | 58.721 | 344 | 90 | 3 | 1 | 315 | 277 | 597 | 2.20e-141 | 412 |
Msa1255900 | AT5G42690.3 | 55.096 | 314 | 99 | 5 | 30 | 313 | 185 | 486 | 1.08e-112 | 335 |
Msa1255900 | AT5G42690.5 | 55.096 | 314 | 99 | 5 | 30 | 313 | 210 | 511 | 2.20e-112 | 335 |
Msa1255900 | AT5G42690.1 | 55.096 | 314 | 99 | 5 | 30 | 313 | 236 | 537 | 3.44e-112 | 335 |
Msa1255900 | AT5G42690.2 | 55.096 | 314 | 99 | 5 | 30 | 313 | 237 | 538 | 3.58e-112 | 335 |
Msa1255900 | AT5G42690.4 | 55.096 | 314 | 99 | 5 | 30 | 313 | 237 | 538 | 3.58e-112 | 335 |
Msa1255900 | AT4G37080.4 | 53.061 | 245 | 63 | 3 | 1 | 216 | 290 | 511 | 5.42e-80 | 252 |
Msa1255900 | AT2G39690.2 | 38.532 | 327 | 152 | 7 | 30 | 313 | 96 | 416 | 1.64e-68 | 219 |
Msa1255900 | AT2G39690.4 | 38.532 | 327 | 152 | 7 | 30 | 313 | 177 | 497 | 7.06e-68 | 220 |
Msa1255900 | AT2G39690.8 | 38.957 | 326 | 151 | 8 | 30 | 313 | 177 | 496 | 8.62e-68 | 220 |
Msa1255900 | AT2G39690.5 | 38.532 | 327 | 152 | 7 | 30 | 313 | 203 | 523 | 1.26e-67 | 220 |
Msa1255900 | AT2G39690.1 | 38.957 | 326 | 151 | 8 | 30 | 313 | 203 | 522 | 1.41e-67 | 220 |
Msa1255900 | AT3G12540.2 | 36.311 | 347 | 178 | 5 | 8 | 313 | 159 | 503 | 8.02e-64 | 210 |
Msa1255900 | AT3G12540.1 | 36.311 | 347 | 178 | 5 | 8 | 313 | 226 | 570 | 3.17e-63 | 210 |
Msa1255900 | AT5G60720.1 | 34.746 | 354 | 157 | 10 | 30 | 313 | 340 | 689 | 2.02e-53 | 186 |
Msa1255900 | AT1G16750.1 | 31.831 | 355 | 165 | 10 | 31 | 313 | 178 | 527 | 7.14e-43 | 155 |
Msa1255900 | AT3G13000.1 | 33.144 | 353 | 163 | 10 | 30 | 313 | 197 | 545 | 3.91e-42 | 153 |
Msa1255900 | AT3G13000.3 | 33.144 | 353 | 163 | 10 | 30 | 313 | 226 | 574 | 4.62e-42 | 153 |
Msa1255900 | AT3G13000.2 | 33.144 | 353 | 163 | 10 | 30 | 313 | 226 | 574 | 4.62e-42 | 153 |
Msa1255900 | AT5G47380.5 | 29.358 | 327 | 203 | 9 | 14 | 313 | 205 | 530 | 1.98e-39 | 145 |
Msa1255900 | AT5G47380.4 | 29.052 | 327 | 204 | 9 | 14 | 313 | 261 | 586 | 4.95e-39 | 145 |
Msa1255900 | AT5G47380.1 | 29.052 | 327 | 204 | 9 | 14 | 313 | 261 | 586 | 6.14e-39 | 145 |
Msa1255900 | AT3G18900.6 | 34.314 | 306 | 183 | 6 | 23 | 313 | 147 | 449 | 1.08e-37 | 139 |
Msa1255900 | AT3G18900.3 | 34.314 | 306 | 183 | 6 | 23 | 313 | 147 | 449 | 1.08e-37 | 139 |
Msa1255900 | AT3G18900.5 | 34.824 | 313 | 172 | 9 | 23 | 313 | 223 | 525 | 2.48e-37 | 139 |
Msa1255900 | AT3G18900.4 | 34.824 | 313 | 172 | 9 | 23 | 313 | 228 | 530 | 3.02e-37 | 139 |
Msa1255900 | AT2G23700.1 | 29.178 | 353 | 200 | 10 | 5 | 313 | 355 | 701 | 1.73e-36 | 139 |
Msa1255900 | AT2G39690.6 | 37.281 | 228 | 96 | 6 | 30 | 216 | 203 | 424 | 5.60e-36 | 134 |
Msa1255900 | AT2G39690.7 | 37.885 | 227 | 95 | 7 | 30 | 216 | 203 | 423 | 6.24e-36 | 134 |
Msa1255900 | AT5G66600.7 | 28.994 | 338 | 183 | 9 | 26 | 313 | 224 | 554 | 1.81e-32 | 126 |
Msa1255900 | AT1G76620.1 | 26.970 | 330 | 189 | 8 | 30 | 313 | 193 | 516 | 1.81e-32 | 126 |
Msa1255900 | AT5G66600.14 | 28.994 | 338 | 183 | 10 | 26 | 313 | 278 | 608 | 2.61e-32 | 126 |
Msa1255900 | AT5G66600.1 | 28.994 | 338 | 183 | 10 | 26 | 313 | 278 | 608 | 2.61e-32 | 126 |
Msa1255900 | AT5G66600.4 | 28.994 | 338 | 183 | 10 | 26 | 313 | 278 | 608 | 2.61e-32 | 126 |
Msa1255900 | AT5G66600.9 | 28.994 | 338 | 183 | 10 | 26 | 313 | 278 | 608 | 2.61e-32 | 126 |
Msa1255900 | AT5G66600.3 | 28.994 | 338 | 183 | 10 | 26 | 313 | 278 | 608 | 2.61e-32 | 126 |
Msa1255900 | AT5G66600.2 | 28.994 | 338 | 183 | 10 | 26 | 313 | 258 | 588 | 2.68e-32 | 126 |
Msa1255900 | AT1G43020.1 | 28.136 | 295 | 193 | 8 | 29 | 314 | 151 | 435 | 4.29e-29 | 116 |
Msa1255900 | AT1G21060.2 | 31.858 | 226 | 138 | 4 | 97 | 315 | 277 | 493 | 1.13e-26 | 110 |
Msa1255900 | AT1G21060.1 | 31.858 | 226 | 138 | 4 | 97 | 315 | 289 | 505 | 1.35e-26 | 109 |
Msa1255900 | AT2G39690.3 | 35.196 | 179 | 79 | 4 | 30 | 171 | 177 | 355 | 2.07e-25 | 104 |
Msa1255900 | AT5G47380.2 | 29.741 | 232 | 136 | 8 | 14 | 219 | 261 | 491 | 3.39e-20 | 91.3 |
Msa1255900 | AT5G47380.3 | 29.956 | 227 | 132 | 8 | 14 | 214 | 261 | 486 | 1.75e-19 | 89.0 |
Msa1255900 | AT4G08550.1 | 28.571 | 217 | 142 | 5 | 97 | 309 | 428 | 635 | 1.93e-19 | 89.4 |
Msa1255900 | AT4G08550.2 | 28.571 | 217 | 142 | 5 | 97 | 309 | 482 | 689 | 2.21e-19 | 89.4 |
Msa1255900 | AT3G18900.1 | 33.014 | 209 | 125 | 5 | 23 | 216 | 228 | 436 | 2.87e-18 | 85.5 |
Msa1255900 | AT5G66600.12 | 29.461 | 241 | 116 | 8 | 26 | 216 | 278 | 514 | 8.95e-18 | 84.0 |
Msa1255900 | AT5G66600.11 | 29.461 | 241 | 116 | 8 | 26 | 216 | 278 | 514 | 8.95e-18 | 84.0 |
Msa1255900 | AT5G66600.6 | 29.461 | 241 | 116 | 8 | 26 | 216 | 278 | 514 | 8.95e-18 | 84.0 |
Msa1255900 | AT5G66600.13 | 29.461 | 241 | 116 | 8 | 26 | 216 | 278 | 514 | 8.95e-18 | 84.0 |
Msa1255900 | AT1G16750.2 | 29.612 | 206 | 81 | 6 | 31 | 173 | 178 | 382 | 7.09e-17 | 80.9 |
Msa1255900 | AT3G11920.1 | 32.749 | 171 | 111 | 4 | 104 | 272 | 426 | 594 | 1.45e-16 | 80.9 |
Msa1255900 | AT3G18900.2 | 35.897 | 156 | 90 | 4 | 23 | 168 | 228 | 383 | 3.03e-15 | 76.3 |
Msa1255900 | AT1G43020.3 | 26.943 | 193 | 130 | 5 | 29 | 214 | 151 | 339 | 1.49e-14 | 73.9 |
Msa1255900 | AT5G66600.10 | 30.108 | 186 | 86 | 5 | 26 | 168 | 278 | 462 | 1.10e-11 | 65.9 |
Msa1255900 | AT5G66600.8 | 30.108 | 186 | 86 | 5 | 26 | 168 | 278 | 462 | 1.10e-11 | 65.9 |
Msa1255900 | AT5G66600.5 | 30.108 | 186 | 86 | 5 | 26 | 168 | 278 | 462 | 1.10e-11 | 65.9 |
Msa1255900 | AT5G66600.15 | 28.495 | 186 | 89 | 5 | 26 | 168 | 224 | 408 | 1.20e-11 | 65.5 |
Find 58 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTTATTTCATCAGGTAAT+TGG | 0.190698 | 8_2:+55248155 | None:intergenic |
ACAACCATTTCCGGACTTTC+AGG | 0.201826 | 8_2:+55249728 | None:intergenic |
CGGACCAACTTCTCTTGTTT+TGG | 0.213209 | 8_2:+55250557 | None:intergenic |
GTGAAAGCAAGAAGCATATT+TGG | 0.230491 | 8_2:-55249281 | Msa1255900:CDS |
AAAGGACCTTGATTCTTTAT+TGG | 0.238431 | 8_2:-55248191 | Msa1255900:CDS |
AGATCTTCTGAAACTCTATT+TGG | 0.238770 | 8_2:+55250732 | None:intergenic |
TTGGAAGTGTACTTCGAATA+TGG | 0.263651 | 8_2:-55247887 | Msa1255900:three_prime_UTR |
ATTAATGCTACAACCATTTC+CGG | 0.323435 | 8_2:+55249719 | None:intergenic |
TCTAACATATTTGTGAGAAT+TGG | 0.347512 | 8_2:-55250696 | Msa1255900:CDS |
CTAATAAATCACTTATTCAT+TGG | 0.361785 | 8_2:+55248035 | None:intergenic |
GCTTGGTTTCTTATTTCATC+AGG | 0.387730 | 8_2:+55248148 | None:intergenic |
CTTCAAGGCATTTAACTGCT+TGG | 0.390658 | 8_2:+55248131 | None:intergenic |
ATTATCTGTTGGTGAATTTG+AGG | 0.390667 | 8_2:+55250779 | None:intergenic |
ACTCACTTTCCCTTCCTTCA+AGG | 0.391301 | 8_2:+55248116 | None:intergenic |
ACTTGCTTCTTTGAACTTGA+AGG | 0.419293 | 8_2:-55250194 | Msa1255900:CDS |
GATTATTTACAAGCTTCAAT+TGG | 0.420391 | 8_2:-55248277 | Msa1255900:CDS |
CAAGCAGTTAAATGCCTTGA+AGG | 0.420884 | 8_2:-55248130 | Msa1255900:CDS |
GATACTAATTCCCAAGTTGT+TGG | 0.421968 | 8_2:-55248236 | Msa1255900:CDS |
ACCTTGATTCTTTATTGGAC+TGG | 0.422533 | 8_2:-55248186 | Msa1255900:CDS |
GATTCTGAACAAATATCATA+AGG | 0.432889 | 8_2:+55250579 | None:intergenic |
ATTGTGGACTTACAAACTTA+AGG | 0.436584 | 8_2:+55249480 | None:intergenic |
GTAAAATTCAGGTACCTACT+TGG | 0.436814 | 8_2:-55250220 | Msa1255900:intron |
GGAAAGTGCAAATGTTACTA+AGG | 0.447874 | 8_2:+55249241 | None:intergenic |
ACTTACAAACTTAAGGTGAT+AGG | 0.449376 | 8_2:+55249487 | None:intergenic |
TAATTCCCAAGTTGTTGGAT+TGG | 0.451039 | 8_2:-55248231 | Msa1255900:CDS |
CTTGCTTCTTTGAACTTGAA+GGG | 0.457672 | 8_2:-55250193 | Msa1255900:CDS |
CTTACAAACTTAAGGTGATA+GGG | 0.461257 | 8_2:+55249488 | None:intergenic |
CATACCTGAAAGTCCGGAAA+TGG | 0.466334 | 8_2:-55249732 | Msa1255900:CDS |
TCTGACACTTTATTATCTGT+TGG | 0.469894 | 8_2:+55250768 | None:intergenic |
AACCTGAAACTAAAATCATA+AGG | 0.475747 | 8_2:+55248067 | None:intergenic |
AAGAAGCAAGTTTCCCAAGT+AGG | 0.475798 | 8_2:+55250206 | None:intergenic |
GAATCCAAAACAAGAGAAGT+TGG | 0.490044 | 8_2:-55250561 | Msa1255900:CDS |
TTTCAGGCAACAATAGTAGT+AGG | 0.492409 | 8_2:-55249560 | Msa1255900:intron |
CAGTTAAATGCCTTGAAGGA+AGG | 0.493380 | 8_2:-55248126 | Msa1255900:CDS |
TTGCACTTTCCTGTGGAAGT+TGG | 0.498705 | 8_2:-55249229 | Msa1255900:CDS |
GGTTGTAGCATTAATGCAAA+AGG | 0.498874 | 8_2:-55249711 | Msa1255900:intron |
AAATAAGACCCAGAAGTTGA+AGG | 0.499068 | 8_2:+55250639 | None:intergenic |
AGCAAGAAGCATATTTGGAC+TGG | 0.499364 | 8_2:-55249276 | Msa1255900:CDS |
ACATGGCATACCTGAAAGTC+CGG | 0.506804 | 8_2:-55249738 | Msa1255900:CDS |
AAGTGAGTCTCTTTCAAAGT+TGG | 0.509880 | 8_2:-55248101 | Msa1255900:CDS |
GGAGATTATCAGAACATGAA+AGG | 0.515426 | 8_2:-55250812 | Msa1255900:CDS |
TAAATACCAATCCAACAACT+TGG | 0.518404 | 8_2:+55248225 | None:intergenic |
GAGATTATCAGAACATGAAA+GGG | 0.519637 | 8_2:-55250811 | Msa1255900:CDS |
AGTTAAATGCCTTGAAGGAA+GGG | 0.523554 | 8_2:-55248125 | Msa1255900:CDS |
TCCAGTCCAATAAAGAATCA+AGG | 0.524058 | 8_2:+55248185 | None:intergenic |
TAAAATTCAGGTACCTACTT+GGG | 0.539959 | 8_2:-55250219 | Msa1255900:intron |
TGTGAGAATTGGTACATCCA+AGG | 0.569116 | 8_2:-55250685 | Msa1255900:CDS |
GTAACATTTGCACTTTCCTG+TGG | 0.584614 | 8_2:-55249236 | Msa1255900:CDS |
GAAGCATATTTGGACTGGAA+TGG | 0.585611 | 8_2:-55249271 | Msa1255900:CDS |
TTATTTCAGCCAATCTAGCA+AGG | 0.592341 | 8_2:-55250622 | Msa1255900:CDS |
GAAAGTGCAAATGTTACTAA+GGG | 0.594562 | 8_2:+55249242 | None:intergenic |
AAATACCAATCCAACAACTT+GGG | 0.609275 | 8_2:+55248226 | None:intergenic |
AGGTGAAGACCAACTTCCAC+AGG | 0.609752 | 8_2:+55249220 | None:intergenic |
TAAGTGATTTATTAGTGTGG+TGG | 0.611464 | 8_2:-55248027 | Msa1255900:three_prime_UTR |
TTACAAACTTAAGGTGATAG+GGG | 0.614980 | 8_2:+55249489 | None:intergenic |
TGGTAGGCATACTTAGAACA+TGG | 0.651116 | 8_2:-55249755 | Msa1255900:intron |
CAGGCAACAATAGTAGTAGG+AGG | 0.658457 | 8_2:-55249557 | Msa1255900:CDS |
GAATAAGTGATTTATTAGTG+TGG | 0.688365 | 8_2:-55248030 | Msa1255900:three_prime_UTR |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTGGTTTAAATA+AGG | - | chr8_2:55250286-55250305 | Msa1255900:intron | 10.0% |
!!! | AACATTATTTAATGTTTTTT+TGG | + | chr8_2:55250683-55250702 | None:intergenic | 10.0% |
!! | AAAAAACATTAAATAATGTT+TGG | - | chr8_2:55250683-55250702 | Msa1255900:CDS | 10.0% |
!! | ATTTCACATAAATTCTTATA+CGG | + | chr8_2:55248105-55248124 | None:intergenic | 15.0% |
!! | AAGAATTTATGTGAAATTAA+AGG | - | chr8_2:55248108-55248127 | Msa1255900:CDS | 15.0% |
!! | AAACTATAAAATCAAAAGAA+AGG | + | chr8_2:55249190-55249209 | None:intergenic | 15.0% |
!! | GAAATAAAGATAGAAATTAA+GGG | + | chr8_2:55249299-55249318 | None:intergenic | 15.0% |
!! | AGAAATAAAGATAGAAATTA+AGG | + | chr8_2:55249300-55249319 | None:intergenic | 15.0% |
!!! | TTTTCTTTTACTTAAATCAA+TGG | - | chr8_2:55249478-55249497 | Msa1255900:intron | 15.0% |
!!! | AATTAAATTTTGAGTGAAAT+AGG | + | chr8_2:55250026-55250045 | None:intergenic | 15.0% |
!! | TGTCAGTATAATTACAATAT+TGG | + | chr8_2:55248237-55248256 | None:intergenic | 20.0% |
!!! | TAATCTTTTGTGTAAAATTC+AGG | - | chr8_2:55248408-55248427 | Msa1255900:intron | 20.0% |
!! | TTATTACCATTCAGTTAATT+TGG | + | chr8_2:55248741-55248760 | None:intergenic | 20.0% |
!! | AATTAACTGAATGGTAATAA+AGG | - | chr8_2:55248741-55248760 | Msa1255900:intron | 20.0% |
!!! | ACTCTAAAATTTAATACTAG+AGG | + | chr8_2:55249550-55249569 | None:intergenic | 20.0% |
!!! | ACTTTTGGTATAATTATGTT+TGG | - | chr8_2:55249712-55249731 | Msa1255900:CDS | 20.0% |
!!! | GTTTTCCATTTTTTACTTTT+AGG | - | chr8_2:55250059-55250078 | Msa1255900:intron | 20.0% |
!! | TTGATCCTAAAAGTAAAAAA+TGG | + | chr8_2:55250067-55250086 | None:intergenic | 20.0% |
!! | AATAAATATGGATTTGTGTT+AGG | + | chr8_2:55250191-55250210 | None:intergenic | 20.0% |
!! | ATTAAATTATATTGCACTGA+AGG | - | chr8_2:55250257-55250276 | Msa1255900:intron | 20.0% |
!! | CTAATAAATCACTTATTCAT+TGG | + | chr8_2:55250607-55250626 | None:intergenic | 20.0% |
!!! | TGGATATTTTTTTTGTACAA+TGG | - | chr8_2:55250632-55250651 | Msa1255900:CDS | 20.0% |
!!! | TGAAAAATCACATGTATTTT+TGG | - | chr8_2:55250733-55250752 | Msa1255900:CDS | 20.0% |
! | TCTAACATATTTGTGAGAAT+TGG | - | chr8_2:55247943-55247962 | Msa1255900:three_prime_UTR | 25.0% |
! | GATTCTGAACAAATATCATA+AGG | + | chr8_2:55248063-55248082 | None:intergenic | 25.0% |
! | TTTAAAAAAACCGAACCAAA+TGG | + | chr8_2:55248792-55248811 | None:intergenic | 25.0% |
!! | TAGACAACTAAGATTTTATC+CGG | + | chr8_2:55248817-55248836 | None:intergenic | 25.0% |
!!! | AAATGATTTTGGTTTCCATA+TGG | - | chr8_2:55248864-55248883 | Msa1255900:intron | 25.0% |
! | ATTGACCTATTACAATTTCA+GGG | + | chr8_2:55249589-55249608 | None:intergenic | 25.0% |
! | TATGTTTGGTAAAAAAACCT+AGG | - | chr8_2:55249726-55249745 | Msa1255900:CDS | 25.0% |
!!! | GAGTTATTTTGACTTTACTT+CGG | + | chr8_2:55249767-55249786 | None:intergenic | 25.0% |
!! | TTGTGTGTGATAATTTTGTT+GGG | + | chr8_2:55249793-55249812 | None:intergenic | 25.0% |
!! | ATTGTGTGTGATAATTTTGT+TGG | + | chr8_2:55249794-55249813 | None:intergenic | 25.0% |
! | AGTTTAGCTATTAGAAAACA+TGG | + | chr8_2:55249887-55249906 | None:intergenic | 25.0% |
! | TTGCTAATTCGTAAAATTCA+AGG | - | chr8_2:55249955-55249974 | Msa1255900:intron | 25.0% |
! | TAATTCGTAAAATTCAAGGA+TGG | - | chr8_2:55249959-55249978 | Msa1255900:intron | 25.0% |
!!! | GAAGGAGCAATTTTTTTTTT+TGG | - | chr8_2:55250275-55250294 | Msa1255900:intron | 25.0% |
!!! | TTTTTGGTTTAAATAAGGTG+AGG | - | chr8_2:55250291-55250310 | Msa1255900:intron | 25.0% |
!!! | TTTTGGTTTAAATAAGGTGA+GGG | - | chr8_2:55250292-55250311 | Msa1255900:intron | 25.0% |
! | GATTATTTACAAGCTTCAAT+TGG | - | chr8_2:55250362-55250381 | Msa1255900:intron | 25.0% |
!! | GTATTTACTAGATTTTGCAA+AGG | - | chr8_2:55250430-55250449 | Msa1255900:intron | 25.0% |
!! | TTCTTATTTCATCAGGTAAT+TGG | + | chr8_2:55250487-55250506 | None:intergenic | 25.0% |
! | AACCTGAAACTAAAATCATA+AGG | + | chr8_2:55250575-55250594 | None:intergenic | 25.0% |
! | GAATAAGTGATTTATTAGTG+TGG | - | chr8_2:55250609-55250628 | Msa1255900:CDS | 25.0% |
!!! | TTTTTCAGAAATGTGTCATA+GGG | + | chr8_2:55250720-55250739 | None:intergenic | 25.0% |
!!! | ATTTTTCAGAAATGTGTCAT+AGG | + | chr8_2:55250721-55250740 | None:intergenic | 25.0% |
GAGATTATCAGAACATGAAA+GGG | - | chr8_2:55247828-55247847 | Msa1255900:three_prime_UTR | 30.0% | |
! | ATTATCTGTTGGTGAATTTG+AGG | + | chr8_2:55247863-55247882 | None:intergenic | 30.0% |
TCTGACACTTTATTATCTGT+TGG | + | chr8_2:55247874-55247893 | None:intergenic | 30.0% | |
!! | AGATCTTCTGAAACTCTATT+TGG | + | chr8_2:55247910-55247929 | None:intergenic | 30.0% |
TACATCCAAGGAAAAATTTG+TGG | - | chr8_2:55247966-55247985 | Msa1255900:three_prime_UTR | 30.0% | |
! | TGATTCCACAAATTTTTCCT+TGG | + | chr8_2:55247974-55247993 | None:intergenic | 30.0% |
!! | AAACATTGCATTTGTTGTTC+TGG | + | chr8_2:55248151-55248170 | None:intergenic | 30.0% |
TAAAATTCAGGTACCTACTT+GGG | - | chr8_2:55248420-55248439 | Msa1255900:intron | 30.0% | |
! | AGAATGCAAGTTTTTCTTGA+TGG | + | chr8_2:55248478-55248497 | None:intergenic | 30.0% |
ATCAAGAAAAACTTGCATTC+TGG | - | chr8_2:55248477-55248496 | Msa1255900:intron | 30.0% | |
! | TTACCATTCAGTTAATTTGG+CGG | + | chr8_2:55248738-55248757 | None:intergenic | 30.0% |
TCTTAGTTGTCTAATACTCT+TGG | - | chr8_2:55248824-55248843 | Msa1255900:intron | 30.0% | |
! | GAGTCAACACTAAATGATTT+TGG | - | chr8_2:55248853-55248872 | Msa1255900:intron | 30.0% |
ATTAATGCTACAACCATTTC+CGG | + | chr8_2:55248923-55248942 | None:intergenic | 30.0% | |
TTACAAACTTAAGGTGATAG+GGG | + | chr8_2:55249153-55249172 | None:intergenic | 30.0% | |
CTTACAAACTTAAGGTGATA+GGG | + | chr8_2:55249154-55249173 | None:intergenic | 30.0% | |
ACTTACAAACTTAAGGTGAT+AGG | + | chr8_2:55249155-55249174 | None:intergenic | 30.0% | |
ATTGTGGACTTACAAACTTA+AGG | + | chr8_2:55249162-55249181 | None:intergenic | 30.0% | |
CAAAAGAAAGGACAAAATTG+TGG | + | chr8_2:55249178-55249197 | None:intergenic | 30.0% | |
! | GTTAATTGAAGCATGCTTTT+AGG | + | chr8_2:55249272-55249291 | None:intergenic | 30.0% |
!!! | TCATCATTTTTTGCAGCTTT+TGG | + | chr8_2:55249337-55249356 | None:intergenic | 30.0% |
! | GAAAGTGCAAATGTTACTAA+GGG | + | chr8_2:55249400-55249419 | None:intergenic | 30.0% |
!!! | GCACAGTACTCTTTTTTTTT+TGG | - | chr8_2:55249510-55249529 | Msa1255900:CDS | 30.0% |
TTTGTCCCTGAAATTGTAAT+AGG | - | chr8_2:55249581-55249600 | Msa1255900:intron | 30.0% | |
GATTGACCTATTACAATTTC+AGG | + | chr8_2:55249590-55249609 | None:intergenic | 30.0% | |
ACATAACATTGTCTAACAGA+AGG | + | chr8_2:55249621-55249640 | None:intergenic | 30.0% | |
! | CAATGGACGAAATTAACTTT+TGG | - | chr8_2:55249697-55249716 | Msa1255900:intron | 30.0% |
GGAAATAAAAAGTAACTCCT+AGG | + | chr8_2:55249746-55249765 | None:intergenic | 30.0% | |
TGCTACATCTTCATTTAATG+TGG | - | chr8_2:55249857-55249876 | Msa1255900:intron | 30.0% | |
TTGTCATGCATCAATCAAAA+TGG | + | chr8_2:55249921-55249940 | None:intergenic | 30.0% | |
! | AACCTAACTTCCTAAACTTT+TGG | + | chr8_2:55250147-55250166 | None:intergenic | 30.0% |
TAGGAAGTTAGGTTAATGAA+TGG | - | chr8_2:55250153-55250172 | Msa1255900:CDS | 30.0% | |
CCACATGCAGAAAATAAATA+TGG | + | chr8_2:55250203-55250222 | None:intergenic | 30.0% | |
!! | CCATATTTATTTTCTGCATG+TGG | - | chr8_2:55250200-55250219 | Msa1255900:CDS | 30.0% |
AAATACCAATCCAACAACTT+GGG | + | chr8_2:55250416-55250435 | None:intergenic | 30.0% | |
TAAATACCAATCCAACAACT+TGG | + | chr8_2:55250417-55250436 | None:intergenic | 30.0% | |
AAAGGACCTTGATTCTTTAT+TGG | - | chr8_2:55250448-55250467 | Msa1255900:intron | 30.0% | |
!!! | AGCCTTATGATTTTAGTTTC+AGG | - | chr8_2:55250570-55250589 | Msa1255900:CDS | 30.0% |
TAAGTGATTTATTAGTGTGG+TGG | - | chr8_2:55250612-55250631 | Msa1255900:CDS | 30.0% | |
GGAGATTATCAGAACATGAA+AGG | - | chr8_2:55247827-55247846 | Msa1255900:three_prime_UTR | 35.0% | |
TCAAAAACACCTTCAACTTC+TGG | - | chr8_2:55247991-55248010 | Msa1255900:three_prime_UTR | 35.0% | |
CAAAAACACCTTCAACTTCT+GGG | - | chr8_2:55247992-55248011 | Msa1255900:three_prime_UTR | 35.0% | |
AAATAAGACCCAGAAGTTGA+AGG | + | chr8_2:55248003-55248022 | None:intergenic | 35.0% | |
TTATTTCAGCCAATCTAGCA+AGG | - | chr8_2:55248017-55248036 | Msa1255900:three_prime_UTR | 35.0% | |
! | GATCATTTTCCTTGCTAGAT+TGG | + | chr8_2:55248029-55248048 | None:intergenic | 35.0% |
GAATCCAAAACAAGAGAAGT+TGG | - | chr8_2:55248078-55248097 | Msa1255900:CDS | 35.0% | |
TTGAATATAACCAGACGTGT+CGG | - | chr8_2:55248299-55248318 | Msa1255900:CDS | 35.0% | |
AACACGACACTTTAGATTGA+AGG | + | chr8_2:55248343-55248362 | None:intergenic | 35.0% | |
TCGTGTTAGTTACTAACTGT+TGG | - | chr8_2:55248356-55248375 | Msa1255900:intron | 35.0% | |
GTAAAATTCAGGTACCTACT+TGG | - | chr8_2:55248419-55248438 | Msa1255900:intron | 35.0% | |
ACTTGCTTCTTTGAACTTGA+AGG | - | chr8_2:55248445-55248464 | Msa1255900:intron | 35.0% | |
CTTGCTTCTTTGAACTTGAA+GGG | - | chr8_2:55248446-55248465 | Msa1255900:intron | 35.0% | |
GGTAAATCATTGTGACAGAA+AGG | + | chr8_2:55248541-55248560 | None:intergenic | 35.0% | |
CACACCTATAATTACAATGC+CGG | - | chr8_2:55248560-55248579 | Msa1255900:intron | 35.0% | |
TAGTCCGGCATTGTAATTAT+AGG | + | chr8_2:55248567-55248586 | None:intergenic | 35.0% | |
ATAGACCAAACTCTTTAGTC+CGG | + | chr8_2:55248582-55248601 | None:intergenic | 35.0% | |
TTACAGTTCAATGTCTGGTT+CGG | + | chr8_2:55248653-55248672 | None:intergenic | 35.0% | |
ACATTGAACTGTAAGTCCTT+TGG | - | chr8_2:55248659-55248678 | Msa1255900:intron | 35.0% | |
CCAGATCGAGAAGTTTAAAA+CGG | + | chr8_2:55248697-55248716 | None:intergenic | 35.0% | |
!! | CGTTTTAAACTTCTCGATCT+GGG | - | chr8_2:55248695-55248714 | Msa1255900:intron | 35.0% |
AACTGAATGGTAATAAAGGC+AGG | - | chr8_2:55248745-55248764 | Msa1255900:intron | 35.0% | |
!!! | GGTTCGGTTTTTTTAAACAC+CGG | - | chr8_2:55248795-55248814 | Msa1255900:intron | 35.0% |
!!! | GATTTTGGTTTCCATATGGT+AGG | - | chr8_2:55248868-55248887 | Msa1255900:intron | 35.0% |
TTCTAAGTATGCCTACCATA+TGG | + | chr8_2:55248882-55248901 | None:intergenic | 35.0% | |
GGTTGTAGCATTAATGCAAA+AGG | - | chr8_2:55248928-55248947 | Msa1255900:intron | 35.0% | |
TTTCAGGCAACAATAGTAGT+AGG | - | chr8_2:55249079-55249098 | Msa1255900:intron | 35.0% | |
! | GTGAAAGCAAGAAGCATATT+TGG | - | chr8_2:55249358-55249377 | Msa1255900:intron | 35.0% |
! | GGAAAGTGCAAATGTTACTA+AGG | + | chr8_2:55249401-55249420 | None:intergenic | 35.0% |
AAAGTTGAGAAACATACTGC+AGG | + | chr8_2:55249442-55249461 | None:intergenic | 35.0% | |
! | GTGTGATAATTTTGTTGGGT+AGG | + | chr8_2:55249789-55249808 | None:intergenic | 35.0% |
! | CAATTTTGTCACTAGAGATG+TGG | - | chr8_2:55249810-55249829 | Msa1255900:intron | 35.0% |
!! | GATGGATTTGATTTGACTAG+TGG | - | chr8_2:55249977-55249996 | Msa1255900:intron | 35.0% |
TGCCAAAAGTTTAGGAAGTT+AGG | - | chr8_2:55250142-55250161 | Msa1255900:CDS | 35.0% | |
GATACTAATTCCCAAGTTGT+TGG | - | chr8_2:55250403-55250422 | Msa1255900:intron | 35.0% | |
TAATTCCCAAGTTGTTGGAT+TGG | - | chr8_2:55250408-55250427 | Msa1255900:intron | 35.0% | |
ACCTTGATTCTTTATTGGAC+TGG | - | chr8_2:55250453-55250472 | Msa1255900:intron | 35.0% | |
TCCAGTCCAATAAAGAATCA+AGG | + | chr8_2:55250457-55250476 | None:intergenic | 35.0% | |
! | GCTTGGTTTCTTATTTCATC+AGG | + | chr8_2:55250494-55250513 | None:intergenic | 35.0% |
AGTTAAATGCCTTGAAGGAA+GGG | - | chr8_2:55250514-55250533 | Msa1255900:intron | 35.0% | |
AAGTGAGTCTCTTTCAAAGT+TGG | - | chr8_2:55250538-55250557 | Msa1255900:intron | 35.0% | |
! | TTGGAAGTGTACTTCGAATA+TGG | - | chr8_2:55250752-55250771 | Msa1255900:CDS | 35.0% |
TGTGAGAATTGGTACATCCA+AGG | - | chr8_2:55247954-55247973 | Msa1255900:three_prime_UTR | 40.0% | |
TGTTCTGGTGAGATCAACAT+TGG | + | chr8_2:55248136-55248155 | None:intergenic | 40.0% | |
CGATGACTTACTTCAATCTG+TGG | + | chr8_2:55248179-55248198 | None:intergenic | 40.0% | |
TCTCTTTGCTAGTGTTTCAC+AGG | + | chr8_2:55248214-55248233 | None:intergenic | 40.0% | |
! | CTTTAGATTGAAGGTGTGTC+TGG | + | chr8_2:55248334-55248353 | None:intergenic | 40.0% |
AAGAAGCAAGTTTCCCAAGT+AGG | + | chr8_2:55248436-55248455 | None:intergenic | 40.0% | |
CGGCATTGTAATTATAGGTG+TGG | + | chr8_2:55248562-55248581 | None:intergenic | 40.0% | |
AGGACTTACAGTTCAATGTC+TGG | + | chr8_2:55248658-55248677 | None:intergenic | 40.0% | |
ACGGTTGAACTATGATCCAA+AGG | + | chr8_2:55248678-55248697 | None:intergenic | 40.0% | |
!! | CCGTTTTAAACTTCTCGATC+TGG | - | chr8_2:55248694-55248713 | Msa1255900:intron | 40.0% |
GAACCGCCAAATTAACTGAA+TGG | - | chr8_2:55248732-55248751 | Msa1255900:intron | 40.0% | |
AGGCAGGTTCAAAGTTCAAT+CGG | - | chr8_2:55248761-55248780 | Msa1255900:intron | 40.0% | |
GTTCAATCGGTTGAACCATT+TGG | - | chr8_2:55248774-55248793 | Msa1255900:intron | 40.0% | |
ATCGGTTGAACCATTTGGTT+CGG | - | chr8_2:55248779-55248798 | Msa1255900:intron | 40.0% | |
TGGTAGGCATACTTAGAACA+TGG | - | chr8_2:55248884-55248903 | Msa1255900:intron | 40.0% | |
CTTCTGACAATGCATGTTTC+AGG | - | chr8_2:55249063-55249082 | Msa1255900:intron | 40.0% | |
! | AGCAAGAAGCATATTTGGAC+TGG | - | chr8_2:55249363-55249382 | Msa1255900:intron | 40.0% |
! | GAAGCATATTTGGACTGGAA+TGG | - | chr8_2:55249368-55249387 | Msa1255900:intron | 40.0% |
GTAACATTTGCACTTTCCTG+TGG | - | chr8_2:55249403-55249422 | Msa1255900:intron | 40.0% | |
TAATTTCGTCCATTGAGACG+TGG | + | chr8_2:55249692-55249711 | None:intergenic | 40.0% | |
! | CCTAAACTTTTGGCAGAGTT+TGG | + | chr8_2:55250137-55250156 | None:intergenic | 40.0% |
CCAAACTCTGCCAAAAGTTT+AGG | - | chr8_2:55250134-55250153 | Msa1255900:CDS | 40.0% | |
! | CTTCAAGGCATTTAACTGCT+TGG | + | chr8_2:55250511-55250530 | None:intergenic | 40.0% |
CAAGCAGTTAAATGCCTTGA+AGG | - | chr8_2:55250509-55250528 | Msa1255900:intron | 40.0% | |
CAGTTAAATGCCTTGAAGGA+AGG | - | chr8_2:55250513-55250532 | Msa1255900:intron | 40.0% | |
!! | CGGACCAACTTCTCTTGTTT+TGG | + | chr8_2:55248085-55248104 | None:intergenic | 45.0% |
CAATGCCGGACTAAAGAGTT+TGG | - | chr8_2:55248574-55248593 | Msa1255900:intron | 45.0% | |
ACATGGCATACCTGAAAGTC+CGG | - | chr8_2:55248901-55248920 | Msa1255900:intron | 45.0% | |
CATACCTGAAAGTCCGGAAA+TGG | - | chr8_2:55248907-55248926 | Msa1255900:intron | 45.0% | |
ACAACCATTTCCGGACTTTC+AGG | + | chr8_2:55248914-55248933 | None:intergenic | 45.0% | |
CAGGCAACAATAGTAGTAGG+AGG | - | chr8_2:55249082-55249101 | Msa1255900:intron | 45.0% | |
TTGCACTTTCCTGTGGAAGT+TGG | - | chr8_2:55249410-55249429 | Msa1255900:intron | 45.0% | |
ACTCACTTTCCCTTCCTTCA+AGG | + | chr8_2:55250526-55250545 | None:intergenic | 45.0% | |
TGACACTGACACGCAGACAT+CGG | - | chr8_2:55248252-55248271 | Msa1255900:CDS | 50.0% | |
! | ATAACCAGACGTGTCGGTGT+TGG | - | chr8_2:55248305-55248324 | Msa1255900:CDS | 50.0% |
AGGTGAAGACCAACTTCCAC+AGG | + | chr8_2:55249422-55249441 | None:intergenic | 50.0% | |
ATTGAGACGTGGCAGTGATG+TGG | + | chr8_2:55249681-55249700 | None:intergenic | 50.0% | |
ACATCACTGCCACGTCTCAA+TGG | - | chr8_2:55249680-55249699 | Msa1255900:intron | 50.0% | |
! | CTAGAGATGTGGTAGCGATG+TGG | - | chr8_2:55249821-55249840 | Msa1255900:intron | 50.0% |
GCAGTGATGTGGAGTTCACG+TGG | + | chr8_2:55249670-55249689 | None:intergenic | 55.0% | |
GTAGCGATGTGGAGTCTGCA+CGG | - | chr8_2:55249832-55249851 | Msa1255900:intron | 55.0% | |
GTGTCCAACACCGACACGTC+TGG | + | chr8_2:55248312-55248331 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 55247820 | 55250841 | 55247820 | ID=Msa1255900;Name=Msa1255900 |
chr8_2 | mRNA | 55247820 | 55250841 | 55247820 | ID=Msa1255900-mRNA-1;Parent=Msa1255900;Name=Msa1255900-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.8|0.83|1|1|1|6|231|315 |
chr8_2 | exon | 55247820 | 55248353 | 55247820 | ID=Msa1255900-mRNA-1:exon:17079;Parent=Msa1255900-mRNA-1 |
chr8_2 | exon | 55249217 | 55249333 | 55249217 | ID=Msa1255900-mRNA-1:exon:17078;Parent=Msa1255900-mRNA-1 |
chr8_2 | exon | 55249493 | 55249576 | 55249493 | ID=Msa1255900-mRNA-1:exon:17077;Parent=Msa1255900-mRNA-1 |
chr8_2 | exon | 55249712 | 55249771 | 55249712 | ID=Msa1255900-mRNA-1:exon:17076;Parent=Msa1255900-mRNA-1 |
chr8_2 | exon | 55250132 | 55250231 | 55250132 | ID=Msa1255900-mRNA-1:exon:17075;Parent=Msa1255900-mRNA-1 |
chr8_2 | exon | 55250558 | 55250841 | 55250558 | ID=Msa1255900-mRNA-1:exon:17074;Parent=Msa1255900-mRNA-1 |
chr8_2 | CDS | 55250558 | 55250841 | 55250558 | ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1 |
chr8_2 | CDS | 55250132 | 55250231 | 55250132 | ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1 |
chr8_2 | CDS | 55249712 | 55249771 | 55249712 | ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1 |
chr8_2 | CDS | 55249493 | 55249576 | 55249493 | ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1 |
chr8_2 | CDS | 55249217 | 55249333 | 55249217 | ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1 |
chr8_2 | CDS | 55248051 | 55248353 | 55248051 | ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1 |
chr8_2 | three_prime_UTR | 55247820 | 55248050 | 55247820 | ID=Msa1255900-mRNA-1:three_prime_utr;Parent=Msa1255900-mRNA-1 |
Gene Sequence |
Protein sequence |