AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1255900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255900 MtrunA17_Chr8g0374741 89.504 343 8 1 1 315 255 597 0.0 625
Msa1255900 MtrunA17_Chr5g0402501 65.598 343 70 3 1 315 224 546 3.88e-157 450
Msa1255900 MtrunA17_Chr1g0153951 54.321 324 119 2 18 313 223 545 1.72e-118 352
Msa1255900 MtrunA17_Chr3g0133631 51.327 339 111 6 10 313 249 568 1.12e-106 322
Msa1255900 MtrunA17_Chr5g0435281 36.612 366 165 7 12 313 147 509 1.51e-68 222
Msa1255900 MtrunA17_Chr4g0028651 38.123 341 153 10 30 313 354 693 7.53e-61 205
Msa1255900 MtrunA17_Chr5g0399331 27.844 334 213 7 8 313 242 575 8.62e-43 155
Msa1255900 MtrunA17_Chr8g0373901 30.539 334 179 5 26 313 294 620 1.34e-39 147
Msa1255900 MtrunA17_Chr5g0403231 30.769 338 170 8 30 313 291 618 6.40e-38 142
Msa1255900 MtrunA17_Chr4g0034351 29.830 352 191 10 10 313 269 612 9.99e-35 133
Msa1255900 MtrunA17_Chr3g0115381 34.392 189 110 6 83 263 532 714 2.31e-20 91.7
Msa1255900 MtrunA17_Chr1g0163291 28.643 199 124 8 83 272 376 565 9.08e-13 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255900 AT4G37080.2 58.721 344 90 3 1 315 290 610 1.92e-141 412
Msa1255900 AT4G37080.3 58.721 344 90 3 1 315 290 610 1.92e-141 412
Msa1255900 AT4G37080.1 58.721 344 90 3 1 315 277 597 2.20e-141 412
Msa1255900 AT5G42690.3 55.096 314 99 5 30 313 185 486 1.08e-112 335
Msa1255900 AT5G42690.5 55.096 314 99 5 30 313 210 511 2.20e-112 335
Msa1255900 AT5G42690.1 55.096 314 99 5 30 313 236 537 3.44e-112 335
Msa1255900 AT5G42690.2 55.096 314 99 5 30 313 237 538 3.58e-112 335
Msa1255900 AT5G42690.4 55.096 314 99 5 30 313 237 538 3.58e-112 335
Msa1255900 AT4G37080.4 53.061 245 63 3 1 216 290 511 5.42e-80 252
Msa1255900 AT2G39690.2 38.532 327 152 7 30 313 96 416 1.64e-68 219
Msa1255900 AT2G39690.4 38.532 327 152 7 30 313 177 497 7.06e-68 220
Msa1255900 AT2G39690.8 38.957 326 151 8 30 313 177 496 8.62e-68 220
Msa1255900 AT2G39690.5 38.532 327 152 7 30 313 203 523 1.26e-67 220
Msa1255900 AT2G39690.1 38.957 326 151 8 30 313 203 522 1.41e-67 220
Msa1255900 AT3G12540.2 36.311 347 178 5 8 313 159 503 8.02e-64 210
Msa1255900 AT3G12540.1 36.311 347 178 5 8 313 226 570 3.17e-63 210
Msa1255900 AT5G60720.1 34.746 354 157 10 30 313 340 689 2.02e-53 186
Msa1255900 AT1G16750.1 31.831 355 165 10 31 313 178 527 7.14e-43 155
Msa1255900 AT3G13000.1 33.144 353 163 10 30 313 197 545 3.91e-42 153
Msa1255900 AT3G13000.3 33.144 353 163 10 30 313 226 574 4.62e-42 153
Msa1255900 AT3G13000.2 33.144 353 163 10 30 313 226 574 4.62e-42 153
Msa1255900 AT5G47380.5 29.358 327 203 9 14 313 205 530 1.98e-39 145
Msa1255900 AT5G47380.4 29.052 327 204 9 14 313 261 586 4.95e-39 145
Msa1255900 AT5G47380.1 29.052 327 204 9 14 313 261 586 6.14e-39 145
Msa1255900 AT3G18900.6 34.314 306 183 6 23 313 147 449 1.08e-37 139
Msa1255900 AT3G18900.3 34.314 306 183 6 23 313 147 449 1.08e-37 139
Msa1255900 AT3G18900.5 34.824 313 172 9 23 313 223 525 2.48e-37 139
Msa1255900 AT3G18900.4 34.824 313 172 9 23 313 228 530 3.02e-37 139
Msa1255900 AT2G23700.1 29.178 353 200 10 5 313 355 701 1.73e-36 139
Msa1255900 AT2G39690.6 37.281 228 96 6 30 216 203 424 5.60e-36 134
Msa1255900 AT2G39690.7 37.885 227 95 7 30 216 203 423 6.24e-36 134
Msa1255900 AT5G66600.7 28.994 338 183 9 26 313 224 554 1.81e-32 126
Msa1255900 AT1G76620.1 26.970 330 189 8 30 313 193 516 1.81e-32 126
Msa1255900 AT5G66600.14 28.994 338 183 10 26 313 278 608 2.61e-32 126
Msa1255900 AT5G66600.1 28.994 338 183 10 26 313 278 608 2.61e-32 126
Msa1255900 AT5G66600.4 28.994 338 183 10 26 313 278 608 2.61e-32 126
Msa1255900 AT5G66600.9 28.994 338 183 10 26 313 278 608 2.61e-32 126
Msa1255900 AT5G66600.3 28.994 338 183 10 26 313 278 608 2.61e-32 126
Msa1255900 AT5G66600.2 28.994 338 183 10 26 313 258 588 2.68e-32 126
Msa1255900 AT1G43020.1 28.136 295 193 8 29 314 151 435 4.29e-29 116
Msa1255900 AT1G21060.2 31.858 226 138 4 97 315 277 493 1.13e-26 110
Msa1255900 AT1G21060.1 31.858 226 138 4 97 315 289 505 1.35e-26 109
Msa1255900 AT2G39690.3 35.196 179 79 4 30 171 177 355 2.07e-25 104
Msa1255900 AT5G47380.2 29.741 232 136 8 14 219 261 491 3.39e-20 91.3
Msa1255900 AT5G47380.3 29.956 227 132 8 14 214 261 486 1.75e-19 89.0
Msa1255900 AT4G08550.1 28.571 217 142 5 97 309 428 635 1.93e-19 89.4
Msa1255900 AT4G08550.2 28.571 217 142 5 97 309 482 689 2.21e-19 89.4
Msa1255900 AT3G18900.1 33.014 209 125 5 23 216 228 436 2.87e-18 85.5
Msa1255900 AT5G66600.12 29.461 241 116 8 26 216 278 514 8.95e-18 84.0
Msa1255900 AT5G66600.11 29.461 241 116 8 26 216 278 514 8.95e-18 84.0
Msa1255900 AT5G66600.6 29.461 241 116 8 26 216 278 514 8.95e-18 84.0
Msa1255900 AT5G66600.13 29.461 241 116 8 26 216 278 514 8.95e-18 84.0
Msa1255900 AT1G16750.2 29.612 206 81 6 31 173 178 382 7.09e-17 80.9
Msa1255900 AT3G11920.1 32.749 171 111 4 104 272 426 594 1.45e-16 80.9
Msa1255900 AT3G18900.2 35.897 156 90 4 23 168 228 383 3.03e-15 76.3
Msa1255900 AT1G43020.3 26.943 193 130 5 29 214 151 339 1.49e-14 73.9
Msa1255900 AT5G66600.10 30.108 186 86 5 26 168 278 462 1.10e-11 65.9
Msa1255900 AT5G66600.8 30.108 186 86 5 26 168 278 462 1.10e-11 65.9
Msa1255900 AT5G66600.5 30.108 186 86 5 26 168 278 462 1.10e-11 65.9
Msa1255900 AT5G66600.15 28.495 186 89 5 26 168 224 408 1.20e-11 65.5

Find 58 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTATTTCATCAGGTAAT+TGG 0.190698 8_2:+55248155 None:intergenic
ACAACCATTTCCGGACTTTC+AGG 0.201826 8_2:+55249728 None:intergenic
CGGACCAACTTCTCTTGTTT+TGG 0.213209 8_2:+55250557 None:intergenic
GTGAAAGCAAGAAGCATATT+TGG 0.230491 8_2:-55249281 Msa1255900:CDS
AAAGGACCTTGATTCTTTAT+TGG 0.238431 8_2:-55248191 Msa1255900:CDS
AGATCTTCTGAAACTCTATT+TGG 0.238770 8_2:+55250732 None:intergenic
TTGGAAGTGTACTTCGAATA+TGG 0.263651 8_2:-55247887 Msa1255900:three_prime_UTR
ATTAATGCTACAACCATTTC+CGG 0.323435 8_2:+55249719 None:intergenic
TCTAACATATTTGTGAGAAT+TGG 0.347512 8_2:-55250696 Msa1255900:CDS
CTAATAAATCACTTATTCAT+TGG 0.361785 8_2:+55248035 None:intergenic
GCTTGGTTTCTTATTTCATC+AGG 0.387730 8_2:+55248148 None:intergenic
CTTCAAGGCATTTAACTGCT+TGG 0.390658 8_2:+55248131 None:intergenic
ATTATCTGTTGGTGAATTTG+AGG 0.390667 8_2:+55250779 None:intergenic
ACTCACTTTCCCTTCCTTCA+AGG 0.391301 8_2:+55248116 None:intergenic
ACTTGCTTCTTTGAACTTGA+AGG 0.419293 8_2:-55250194 Msa1255900:CDS
GATTATTTACAAGCTTCAAT+TGG 0.420391 8_2:-55248277 Msa1255900:CDS
CAAGCAGTTAAATGCCTTGA+AGG 0.420884 8_2:-55248130 Msa1255900:CDS
GATACTAATTCCCAAGTTGT+TGG 0.421968 8_2:-55248236 Msa1255900:CDS
ACCTTGATTCTTTATTGGAC+TGG 0.422533 8_2:-55248186 Msa1255900:CDS
GATTCTGAACAAATATCATA+AGG 0.432889 8_2:+55250579 None:intergenic
ATTGTGGACTTACAAACTTA+AGG 0.436584 8_2:+55249480 None:intergenic
GTAAAATTCAGGTACCTACT+TGG 0.436814 8_2:-55250220 Msa1255900:intron
GGAAAGTGCAAATGTTACTA+AGG 0.447874 8_2:+55249241 None:intergenic
ACTTACAAACTTAAGGTGAT+AGG 0.449376 8_2:+55249487 None:intergenic
TAATTCCCAAGTTGTTGGAT+TGG 0.451039 8_2:-55248231 Msa1255900:CDS
CTTGCTTCTTTGAACTTGAA+GGG 0.457672 8_2:-55250193 Msa1255900:CDS
CTTACAAACTTAAGGTGATA+GGG 0.461257 8_2:+55249488 None:intergenic
CATACCTGAAAGTCCGGAAA+TGG 0.466334 8_2:-55249732 Msa1255900:CDS
TCTGACACTTTATTATCTGT+TGG 0.469894 8_2:+55250768 None:intergenic
AACCTGAAACTAAAATCATA+AGG 0.475747 8_2:+55248067 None:intergenic
AAGAAGCAAGTTTCCCAAGT+AGG 0.475798 8_2:+55250206 None:intergenic
GAATCCAAAACAAGAGAAGT+TGG 0.490044 8_2:-55250561 Msa1255900:CDS
TTTCAGGCAACAATAGTAGT+AGG 0.492409 8_2:-55249560 Msa1255900:intron
CAGTTAAATGCCTTGAAGGA+AGG 0.493380 8_2:-55248126 Msa1255900:CDS
TTGCACTTTCCTGTGGAAGT+TGG 0.498705 8_2:-55249229 Msa1255900:CDS
GGTTGTAGCATTAATGCAAA+AGG 0.498874 8_2:-55249711 Msa1255900:intron
AAATAAGACCCAGAAGTTGA+AGG 0.499068 8_2:+55250639 None:intergenic
AGCAAGAAGCATATTTGGAC+TGG 0.499364 8_2:-55249276 Msa1255900:CDS
ACATGGCATACCTGAAAGTC+CGG 0.506804 8_2:-55249738 Msa1255900:CDS
AAGTGAGTCTCTTTCAAAGT+TGG 0.509880 8_2:-55248101 Msa1255900:CDS
GGAGATTATCAGAACATGAA+AGG 0.515426 8_2:-55250812 Msa1255900:CDS
TAAATACCAATCCAACAACT+TGG 0.518404 8_2:+55248225 None:intergenic
GAGATTATCAGAACATGAAA+GGG 0.519637 8_2:-55250811 Msa1255900:CDS
AGTTAAATGCCTTGAAGGAA+GGG 0.523554 8_2:-55248125 Msa1255900:CDS
TCCAGTCCAATAAAGAATCA+AGG 0.524058 8_2:+55248185 None:intergenic
TAAAATTCAGGTACCTACTT+GGG 0.539959 8_2:-55250219 Msa1255900:intron
TGTGAGAATTGGTACATCCA+AGG 0.569116 8_2:-55250685 Msa1255900:CDS
GTAACATTTGCACTTTCCTG+TGG 0.584614 8_2:-55249236 Msa1255900:CDS
GAAGCATATTTGGACTGGAA+TGG 0.585611 8_2:-55249271 Msa1255900:CDS
TTATTTCAGCCAATCTAGCA+AGG 0.592341 8_2:-55250622 Msa1255900:CDS
GAAAGTGCAAATGTTACTAA+GGG 0.594562 8_2:+55249242 None:intergenic
AAATACCAATCCAACAACTT+GGG 0.609275 8_2:+55248226 None:intergenic
AGGTGAAGACCAACTTCCAC+AGG 0.609752 8_2:+55249220 None:intergenic
TAAGTGATTTATTAGTGTGG+TGG 0.611464 8_2:-55248027 Msa1255900:three_prime_UTR
TTACAAACTTAAGGTGATAG+GGG 0.614980 8_2:+55249489 None:intergenic
TGGTAGGCATACTTAGAACA+TGG 0.651116 8_2:-55249755 Msa1255900:intron
CAGGCAACAATAGTAGTAGG+AGG 0.658457 8_2:-55249557 Msa1255900:CDS
GAATAAGTGATTTATTAGTG+TGG 0.688365 8_2:-55248030 Msa1255900:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTGGTTTAAATA+AGG - chr8_2:55250286-55250305 Msa1255900:intron 10.0%
!!! AACATTATTTAATGTTTTTT+TGG + chr8_2:55250683-55250702 None:intergenic 10.0%
!! AAAAAACATTAAATAATGTT+TGG - chr8_2:55250683-55250702 Msa1255900:CDS 10.0%
!! ATTTCACATAAATTCTTATA+CGG + chr8_2:55248105-55248124 None:intergenic 15.0%
!! AAGAATTTATGTGAAATTAA+AGG - chr8_2:55248108-55248127 Msa1255900:CDS 15.0%
!! AAACTATAAAATCAAAAGAA+AGG + chr8_2:55249190-55249209 None:intergenic 15.0%
!! GAAATAAAGATAGAAATTAA+GGG + chr8_2:55249299-55249318 None:intergenic 15.0%
!! AGAAATAAAGATAGAAATTA+AGG + chr8_2:55249300-55249319 None:intergenic 15.0%
!!! TTTTCTTTTACTTAAATCAA+TGG - chr8_2:55249478-55249497 Msa1255900:intron 15.0%
!!! AATTAAATTTTGAGTGAAAT+AGG + chr8_2:55250026-55250045 None:intergenic 15.0%
!! TGTCAGTATAATTACAATAT+TGG + chr8_2:55248237-55248256 None:intergenic 20.0%
!!! TAATCTTTTGTGTAAAATTC+AGG - chr8_2:55248408-55248427 Msa1255900:intron 20.0%
!! TTATTACCATTCAGTTAATT+TGG + chr8_2:55248741-55248760 None:intergenic 20.0%
!! AATTAACTGAATGGTAATAA+AGG - chr8_2:55248741-55248760 Msa1255900:intron 20.0%
!!! ACTCTAAAATTTAATACTAG+AGG + chr8_2:55249550-55249569 None:intergenic 20.0%
!!! ACTTTTGGTATAATTATGTT+TGG - chr8_2:55249712-55249731 Msa1255900:CDS 20.0%
!!! GTTTTCCATTTTTTACTTTT+AGG - chr8_2:55250059-55250078 Msa1255900:intron 20.0%
!! TTGATCCTAAAAGTAAAAAA+TGG + chr8_2:55250067-55250086 None:intergenic 20.0%
!! AATAAATATGGATTTGTGTT+AGG + chr8_2:55250191-55250210 None:intergenic 20.0%
!! ATTAAATTATATTGCACTGA+AGG - chr8_2:55250257-55250276 Msa1255900:intron 20.0%
!! CTAATAAATCACTTATTCAT+TGG + chr8_2:55250607-55250626 None:intergenic 20.0%
!!! TGGATATTTTTTTTGTACAA+TGG - chr8_2:55250632-55250651 Msa1255900:CDS 20.0%
!!! TGAAAAATCACATGTATTTT+TGG - chr8_2:55250733-55250752 Msa1255900:CDS 20.0%
! TCTAACATATTTGTGAGAAT+TGG - chr8_2:55247943-55247962 Msa1255900:three_prime_UTR 25.0%
! GATTCTGAACAAATATCATA+AGG + chr8_2:55248063-55248082 None:intergenic 25.0%
! TTTAAAAAAACCGAACCAAA+TGG + chr8_2:55248792-55248811 None:intergenic 25.0%
!! TAGACAACTAAGATTTTATC+CGG + chr8_2:55248817-55248836 None:intergenic 25.0%
!!! AAATGATTTTGGTTTCCATA+TGG - chr8_2:55248864-55248883 Msa1255900:intron 25.0%
! ATTGACCTATTACAATTTCA+GGG + chr8_2:55249589-55249608 None:intergenic 25.0%
! TATGTTTGGTAAAAAAACCT+AGG - chr8_2:55249726-55249745 Msa1255900:CDS 25.0%
!!! GAGTTATTTTGACTTTACTT+CGG + chr8_2:55249767-55249786 None:intergenic 25.0%
!! TTGTGTGTGATAATTTTGTT+GGG + chr8_2:55249793-55249812 None:intergenic 25.0%
!! ATTGTGTGTGATAATTTTGT+TGG + chr8_2:55249794-55249813 None:intergenic 25.0%
! AGTTTAGCTATTAGAAAACA+TGG + chr8_2:55249887-55249906 None:intergenic 25.0%
! TTGCTAATTCGTAAAATTCA+AGG - chr8_2:55249955-55249974 Msa1255900:intron 25.0%
! TAATTCGTAAAATTCAAGGA+TGG - chr8_2:55249959-55249978 Msa1255900:intron 25.0%
!!! GAAGGAGCAATTTTTTTTTT+TGG - chr8_2:55250275-55250294 Msa1255900:intron 25.0%
!!! TTTTTGGTTTAAATAAGGTG+AGG - chr8_2:55250291-55250310 Msa1255900:intron 25.0%
!!! TTTTGGTTTAAATAAGGTGA+GGG - chr8_2:55250292-55250311 Msa1255900:intron 25.0%
! GATTATTTACAAGCTTCAAT+TGG - chr8_2:55250362-55250381 Msa1255900:intron 25.0%
!! GTATTTACTAGATTTTGCAA+AGG - chr8_2:55250430-55250449 Msa1255900:intron 25.0%
!! TTCTTATTTCATCAGGTAAT+TGG + chr8_2:55250487-55250506 None:intergenic 25.0%
! AACCTGAAACTAAAATCATA+AGG + chr8_2:55250575-55250594 None:intergenic 25.0%
! GAATAAGTGATTTATTAGTG+TGG - chr8_2:55250609-55250628 Msa1255900:CDS 25.0%
!!! TTTTTCAGAAATGTGTCATA+GGG + chr8_2:55250720-55250739 None:intergenic 25.0%
!!! ATTTTTCAGAAATGTGTCAT+AGG + chr8_2:55250721-55250740 None:intergenic 25.0%
GAGATTATCAGAACATGAAA+GGG - chr8_2:55247828-55247847 Msa1255900:three_prime_UTR 30.0%
! ATTATCTGTTGGTGAATTTG+AGG + chr8_2:55247863-55247882 None:intergenic 30.0%
TCTGACACTTTATTATCTGT+TGG + chr8_2:55247874-55247893 None:intergenic 30.0%
!! AGATCTTCTGAAACTCTATT+TGG + chr8_2:55247910-55247929 None:intergenic 30.0%
TACATCCAAGGAAAAATTTG+TGG - chr8_2:55247966-55247985 Msa1255900:three_prime_UTR 30.0%
! TGATTCCACAAATTTTTCCT+TGG + chr8_2:55247974-55247993 None:intergenic 30.0%
!! AAACATTGCATTTGTTGTTC+TGG + chr8_2:55248151-55248170 None:intergenic 30.0%
TAAAATTCAGGTACCTACTT+GGG - chr8_2:55248420-55248439 Msa1255900:intron 30.0%
! AGAATGCAAGTTTTTCTTGA+TGG + chr8_2:55248478-55248497 None:intergenic 30.0%
ATCAAGAAAAACTTGCATTC+TGG - chr8_2:55248477-55248496 Msa1255900:intron 30.0%
! TTACCATTCAGTTAATTTGG+CGG + chr8_2:55248738-55248757 None:intergenic 30.0%
TCTTAGTTGTCTAATACTCT+TGG - chr8_2:55248824-55248843 Msa1255900:intron 30.0%
! GAGTCAACACTAAATGATTT+TGG - chr8_2:55248853-55248872 Msa1255900:intron 30.0%
ATTAATGCTACAACCATTTC+CGG + chr8_2:55248923-55248942 None:intergenic 30.0%
TTACAAACTTAAGGTGATAG+GGG + chr8_2:55249153-55249172 None:intergenic 30.0%
CTTACAAACTTAAGGTGATA+GGG + chr8_2:55249154-55249173 None:intergenic 30.0%
ACTTACAAACTTAAGGTGAT+AGG + chr8_2:55249155-55249174 None:intergenic 30.0%
ATTGTGGACTTACAAACTTA+AGG + chr8_2:55249162-55249181 None:intergenic 30.0%
CAAAAGAAAGGACAAAATTG+TGG + chr8_2:55249178-55249197 None:intergenic 30.0%
! GTTAATTGAAGCATGCTTTT+AGG + chr8_2:55249272-55249291 None:intergenic 30.0%
!!! TCATCATTTTTTGCAGCTTT+TGG + chr8_2:55249337-55249356 None:intergenic 30.0%
! GAAAGTGCAAATGTTACTAA+GGG + chr8_2:55249400-55249419 None:intergenic 30.0%
!!! GCACAGTACTCTTTTTTTTT+TGG - chr8_2:55249510-55249529 Msa1255900:CDS 30.0%
TTTGTCCCTGAAATTGTAAT+AGG - chr8_2:55249581-55249600 Msa1255900:intron 30.0%
GATTGACCTATTACAATTTC+AGG + chr8_2:55249590-55249609 None:intergenic 30.0%
ACATAACATTGTCTAACAGA+AGG + chr8_2:55249621-55249640 None:intergenic 30.0%
! CAATGGACGAAATTAACTTT+TGG - chr8_2:55249697-55249716 Msa1255900:intron 30.0%
GGAAATAAAAAGTAACTCCT+AGG + chr8_2:55249746-55249765 None:intergenic 30.0%
TGCTACATCTTCATTTAATG+TGG - chr8_2:55249857-55249876 Msa1255900:intron 30.0%
TTGTCATGCATCAATCAAAA+TGG + chr8_2:55249921-55249940 None:intergenic 30.0%
! AACCTAACTTCCTAAACTTT+TGG + chr8_2:55250147-55250166 None:intergenic 30.0%
TAGGAAGTTAGGTTAATGAA+TGG - chr8_2:55250153-55250172 Msa1255900:CDS 30.0%
CCACATGCAGAAAATAAATA+TGG + chr8_2:55250203-55250222 None:intergenic 30.0%
!! CCATATTTATTTTCTGCATG+TGG - chr8_2:55250200-55250219 Msa1255900:CDS 30.0%
AAATACCAATCCAACAACTT+GGG + chr8_2:55250416-55250435 None:intergenic 30.0%
TAAATACCAATCCAACAACT+TGG + chr8_2:55250417-55250436 None:intergenic 30.0%
AAAGGACCTTGATTCTTTAT+TGG - chr8_2:55250448-55250467 Msa1255900:intron 30.0%
!!! AGCCTTATGATTTTAGTTTC+AGG - chr8_2:55250570-55250589 Msa1255900:CDS 30.0%
TAAGTGATTTATTAGTGTGG+TGG - chr8_2:55250612-55250631 Msa1255900:CDS 30.0%
GGAGATTATCAGAACATGAA+AGG - chr8_2:55247827-55247846 Msa1255900:three_prime_UTR 35.0%
TCAAAAACACCTTCAACTTC+TGG - chr8_2:55247991-55248010 Msa1255900:three_prime_UTR 35.0%
CAAAAACACCTTCAACTTCT+GGG - chr8_2:55247992-55248011 Msa1255900:three_prime_UTR 35.0%
AAATAAGACCCAGAAGTTGA+AGG + chr8_2:55248003-55248022 None:intergenic 35.0%
TTATTTCAGCCAATCTAGCA+AGG - chr8_2:55248017-55248036 Msa1255900:three_prime_UTR 35.0%
! GATCATTTTCCTTGCTAGAT+TGG + chr8_2:55248029-55248048 None:intergenic 35.0%
GAATCCAAAACAAGAGAAGT+TGG - chr8_2:55248078-55248097 Msa1255900:CDS 35.0%
TTGAATATAACCAGACGTGT+CGG - chr8_2:55248299-55248318 Msa1255900:CDS 35.0%
AACACGACACTTTAGATTGA+AGG + chr8_2:55248343-55248362 None:intergenic 35.0%
TCGTGTTAGTTACTAACTGT+TGG - chr8_2:55248356-55248375 Msa1255900:intron 35.0%
GTAAAATTCAGGTACCTACT+TGG - chr8_2:55248419-55248438 Msa1255900:intron 35.0%
ACTTGCTTCTTTGAACTTGA+AGG - chr8_2:55248445-55248464 Msa1255900:intron 35.0%
CTTGCTTCTTTGAACTTGAA+GGG - chr8_2:55248446-55248465 Msa1255900:intron 35.0%
GGTAAATCATTGTGACAGAA+AGG + chr8_2:55248541-55248560 None:intergenic 35.0%
CACACCTATAATTACAATGC+CGG - chr8_2:55248560-55248579 Msa1255900:intron 35.0%
TAGTCCGGCATTGTAATTAT+AGG + chr8_2:55248567-55248586 None:intergenic 35.0%
ATAGACCAAACTCTTTAGTC+CGG + chr8_2:55248582-55248601 None:intergenic 35.0%
TTACAGTTCAATGTCTGGTT+CGG + chr8_2:55248653-55248672 None:intergenic 35.0%
ACATTGAACTGTAAGTCCTT+TGG - chr8_2:55248659-55248678 Msa1255900:intron 35.0%
CCAGATCGAGAAGTTTAAAA+CGG + chr8_2:55248697-55248716 None:intergenic 35.0%
!! CGTTTTAAACTTCTCGATCT+GGG - chr8_2:55248695-55248714 Msa1255900:intron 35.0%
AACTGAATGGTAATAAAGGC+AGG - chr8_2:55248745-55248764 Msa1255900:intron 35.0%
!!! GGTTCGGTTTTTTTAAACAC+CGG - chr8_2:55248795-55248814 Msa1255900:intron 35.0%
!!! GATTTTGGTTTCCATATGGT+AGG - chr8_2:55248868-55248887 Msa1255900:intron 35.0%
TTCTAAGTATGCCTACCATA+TGG + chr8_2:55248882-55248901 None:intergenic 35.0%
GGTTGTAGCATTAATGCAAA+AGG - chr8_2:55248928-55248947 Msa1255900:intron 35.0%
TTTCAGGCAACAATAGTAGT+AGG - chr8_2:55249079-55249098 Msa1255900:intron 35.0%
! GTGAAAGCAAGAAGCATATT+TGG - chr8_2:55249358-55249377 Msa1255900:intron 35.0%
! GGAAAGTGCAAATGTTACTA+AGG + chr8_2:55249401-55249420 None:intergenic 35.0%
AAAGTTGAGAAACATACTGC+AGG + chr8_2:55249442-55249461 None:intergenic 35.0%
! GTGTGATAATTTTGTTGGGT+AGG + chr8_2:55249789-55249808 None:intergenic 35.0%
! CAATTTTGTCACTAGAGATG+TGG - chr8_2:55249810-55249829 Msa1255900:intron 35.0%
!! GATGGATTTGATTTGACTAG+TGG - chr8_2:55249977-55249996 Msa1255900:intron 35.0%
TGCCAAAAGTTTAGGAAGTT+AGG - chr8_2:55250142-55250161 Msa1255900:CDS 35.0%
GATACTAATTCCCAAGTTGT+TGG - chr8_2:55250403-55250422 Msa1255900:intron 35.0%
TAATTCCCAAGTTGTTGGAT+TGG - chr8_2:55250408-55250427 Msa1255900:intron 35.0%
ACCTTGATTCTTTATTGGAC+TGG - chr8_2:55250453-55250472 Msa1255900:intron 35.0%
TCCAGTCCAATAAAGAATCA+AGG + chr8_2:55250457-55250476 None:intergenic 35.0%
! GCTTGGTTTCTTATTTCATC+AGG + chr8_2:55250494-55250513 None:intergenic 35.0%
AGTTAAATGCCTTGAAGGAA+GGG - chr8_2:55250514-55250533 Msa1255900:intron 35.0%
AAGTGAGTCTCTTTCAAAGT+TGG - chr8_2:55250538-55250557 Msa1255900:intron 35.0%
! TTGGAAGTGTACTTCGAATA+TGG - chr8_2:55250752-55250771 Msa1255900:CDS 35.0%
TGTGAGAATTGGTACATCCA+AGG - chr8_2:55247954-55247973 Msa1255900:three_prime_UTR 40.0%
TGTTCTGGTGAGATCAACAT+TGG + chr8_2:55248136-55248155 None:intergenic 40.0%
CGATGACTTACTTCAATCTG+TGG + chr8_2:55248179-55248198 None:intergenic 40.0%
TCTCTTTGCTAGTGTTTCAC+AGG + chr8_2:55248214-55248233 None:intergenic 40.0%
! CTTTAGATTGAAGGTGTGTC+TGG + chr8_2:55248334-55248353 None:intergenic 40.0%
AAGAAGCAAGTTTCCCAAGT+AGG + chr8_2:55248436-55248455 None:intergenic 40.0%
CGGCATTGTAATTATAGGTG+TGG + chr8_2:55248562-55248581 None:intergenic 40.0%
AGGACTTACAGTTCAATGTC+TGG + chr8_2:55248658-55248677 None:intergenic 40.0%
ACGGTTGAACTATGATCCAA+AGG + chr8_2:55248678-55248697 None:intergenic 40.0%
!! CCGTTTTAAACTTCTCGATC+TGG - chr8_2:55248694-55248713 Msa1255900:intron 40.0%
GAACCGCCAAATTAACTGAA+TGG - chr8_2:55248732-55248751 Msa1255900:intron 40.0%
AGGCAGGTTCAAAGTTCAAT+CGG - chr8_2:55248761-55248780 Msa1255900:intron 40.0%
GTTCAATCGGTTGAACCATT+TGG - chr8_2:55248774-55248793 Msa1255900:intron 40.0%
ATCGGTTGAACCATTTGGTT+CGG - chr8_2:55248779-55248798 Msa1255900:intron 40.0%
TGGTAGGCATACTTAGAACA+TGG - chr8_2:55248884-55248903 Msa1255900:intron 40.0%
CTTCTGACAATGCATGTTTC+AGG - chr8_2:55249063-55249082 Msa1255900:intron 40.0%
! AGCAAGAAGCATATTTGGAC+TGG - chr8_2:55249363-55249382 Msa1255900:intron 40.0%
! GAAGCATATTTGGACTGGAA+TGG - chr8_2:55249368-55249387 Msa1255900:intron 40.0%
GTAACATTTGCACTTTCCTG+TGG - chr8_2:55249403-55249422 Msa1255900:intron 40.0%
TAATTTCGTCCATTGAGACG+TGG + chr8_2:55249692-55249711 None:intergenic 40.0%
! CCTAAACTTTTGGCAGAGTT+TGG + chr8_2:55250137-55250156 None:intergenic 40.0%
CCAAACTCTGCCAAAAGTTT+AGG - chr8_2:55250134-55250153 Msa1255900:CDS 40.0%
! CTTCAAGGCATTTAACTGCT+TGG + chr8_2:55250511-55250530 None:intergenic 40.0%
CAAGCAGTTAAATGCCTTGA+AGG - chr8_2:55250509-55250528 Msa1255900:intron 40.0%
CAGTTAAATGCCTTGAAGGA+AGG - chr8_2:55250513-55250532 Msa1255900:intron 40.0%
!! CGGACCAACTTCTCTTGTTT+TGG + chr8_2:55248085-55248104 None:intergenic 45.0%
CAATGCCGGACTAAAGAGTT+TGG - chr8_2:55248574-55248593 Msa1255900:intron 45.0%
ACATGGCATACCTGAAAGTC+CGG - chr8_2:55248901-55248920 Msa1255900:intron 45.0%
CATACCTGAAAGTCCGGAAA+TGG - chr8_2:55248907-55248926 Msa1255900:intron 45.0%
ACAACCATTTCCGGACTTTC+AGG + chr8_2:55248914-55248933 None:intergenic 45.0%
CAGGCAACAATAGTAGTAGG+AGG - chr8_2:55249082-55249101 Msa1255900:intron 45.0%
TTGCACTTTCCTGTGGAAGT+TGG - chr8_2:55249410-55249429 Msa1255900:intron 45.0%
ACTCACTTTCCCTTCCTTCA+AGG + chr8_2:55250526-55250545 None:intergenic 45.0%
TGACACTGACACGCAGACAT+CGG - chr8_2:55248252-55248271 Msa1255900:CDS 50.0%
! ATAACCAGACGTGTCGGTGT+TGG - chr8_2:55248305-55248324 Msa1255900:CDS 50.0%
AGGTGAAGACCAACTTCCAC+AGG + chr8_2:55249422-55249441 None:intergenic 50.0%
ATTGAGACGTGGCAGTGATG+TGG + chr8_2:55249681-55249700 None:intergenic 50.0%
ACATCACTGCCACGTCTCAA+TGG - chr8_2:55249680-55249699 Msa1255900:intron 50.0%
! CTAGAGATGTGGTAGCGATG+TGG - chr8_2:55249821-55249840 Msa1255900:intron 50.0%
GCAGTGATGTGGAGTTCACG+TGG + chr8_2:55249670-55249689 None:intergenic 55.0%
GTAGCGATGTGGAGTCTGCA+CGG - chr8_2:55249832-55249851 Msa1255900:intron 55.0%
GTGTCCAACACCGACACGTC+TGG + chr8_2:55248312-55248331 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 55247820 55250841 55247820 ID=Msa1255900;Name=Msa1255900
chr8_2 mRNA 55247820 55250841 55247820 ID=Msa1255900-mRNA-1;Parent=Msa1255900;Name=Msa1255900-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.8|0.83|1|1|1|6|231|315
chr8_2 exon 55247820 55248353 55247820 ID=Msa1255900-mRNA-1:exon:17079;Parent=Msa1255900-mRNA-1
chr8_2 exon 55249217 55249333 55249217 ID=Msa1255900-mRNA-1:exon:17078;Parent=Msa1255900-mRNA-1
chr8_2 exon 55249493 55249576 55249493 ID=Msa1255900-mRNA-1:exon:17077;Parent=Msa1255900-mRNA-1
chr8_2 exon 55249712 55249771 55249712 ID=Msa1255900-mRNA-1:exon:17076;Parent=Msa1255900-mRNA-1
chr8_2 exon 55250132 55250231 55250132 ID=Msa1255900-mRNA-1:exon:17075;Parent=Msa1255900-mRNA-1
chr8_2 exon 55250558 55250841 55250558 ID=Msa1255900-mRNA-1:exon:17074;Parent=Msa1255900-mRNA-1
chr8_2 CDS 55250558 55250841 55250558 ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1
chr8_2 CDS 55250132 55250231 55250132 ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1
chr8_2 CDS 55249712 55249771 55249712 ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1
chr8_2 CDS 55249493 55249576 55249493 ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1
chr8_2 CDS 55249217 55249333 55249217 ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1
chr8_2 CDS 55248051 55248353 55248051 ID=Msa1255900-mRNA-1:cds;Parent=Msa1255900-mRNA-1
chr8_2 three_prime_UTR 55247820 55248050 55247820 ID=Msa1255900-mRNA-1:three_prime_utr;Parent=Msa1255900-mRNA-1
Gene Sequence

>Msa1255900

CTGGAATGGAGATTATCAGAACATGAAAGGGCACATAGTACCTCAAATTCACCAACAGATAATAAAGTGTCAGAAGTTCATAGCACACCAAATAGAGTTTCAGAAGATCTTGTCAAGTGTTTGTCTAACATATTTGTGAGAATTGGTACATCCAAGGAAAAATTTGTGGAATCAAAAACACCTTCAACTTCTGGGTCTTATTTCAGCCAATCTAGCAAGGAAAATGATCAGTTTTGTGATCCTTATGATATTTGTTCAGAATCCAAAACAAGAGAAGTTGGTCCGTACCTACTTGGGAAACTTGCTTCTTTGAACTTGAAGGGACTTAACCATCAAGAAAAACTTGCATTCTGGATAAATACTTACAATTCTTCTATTCTGAATGCATACTTAGAACATGGCATACCTGAAAGTCCGGAAATGGTTGTAGCATTAATGCAAAAGGCAACAATAGTAGTAGGAGGACAGTTGCTGAATGCAATCACAATAGAGCATTTTATCTTGAGACTCCCCTATCACCTTAAGTTTACATGTCCAAAAGCTGCAAAAAATGATGAAGTGAAAGCAAGAAGCATATTTGGACTGGAATGGTCTGAGCCCTTAGTAACATTTGCACTTTCCTGTGGAAGTTGGTCTTCACCTGCAGTGAGGGTGTATACAGCAACACAAGTTGATAATGAGTTAGAAGCAGCAAAGAGAGATTATTTACAAGCTTCAATTGGAATTACAAAAACAAACAAGATACTAATTCCCAAGTTGTTGGATTGGTATTTACTAGATTTTGCAAAGGACCTTGATTCTTTATTGGACTGGATTTGTCTCCAATTACCTGATGAAATAAGAAACCAAGCAGTTAAATGCCTTGAAGGAAGGGAAAGTGAGTCTCTTTCAAAGTTGGTACAAATGAAGCCTTATGATTTTAGTTTCAGGTTGCTTTTACACCAATGA

Protein sequence

>Msa1255900

LEWRLSEHERAHSTSNSPTDNKVSEVHSTPNRVSEDLVKCLSNIFVRIGTSKEKFVESKTPSTSGSYFSQSSKENDQFCDPYDICSESKTREVGPYLLGKLASLNLKGLNHQEKLAFWINTYNSSILNAYLEHGIPESPEMVVALMQKATIVVGGQLLNAITIEHFILRLPYHLKFTCPKAAKNDEVKARSIFGLEWSEPLVTFALSCGSWSSPAVRVYTATQVDNELEAAKRDYLQASIGITKTNKILIPKLLDWYLLDFAKDLDSLLDWICLQLPDEIRNQAVKCLEGRESESLSKLVQMKPYDFSFRLLLHQ*