Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328320 | XP_003629592.1 | 97.931 | 580 | 12 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328320 | G7LGE4 | 97.931 | 580 | 12 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1166 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1255900 | Msa1328320 | 0.886142 | 4.421784e-72 | -8.615850e-47 |
| Msa1296120 | Msa1328320 | 0.981480 | 1.085065e-152 | -8.615850e-47 |
| Msa1328320 | Msa1328350 | 0.970588 | 7.595094e-132 | -8.615850e-47 |
| Msa1040120 | Msa1328320 | 0.803836 | 2.882978e-49 | -8.615850e-47 |
| Msa1083410 | Msa1328320 | 0.800139 | 1.657965e-48 | -8.615850e-47 |
| Msa1128160 | Msa1328320 | 0.801308 | 9.574003e-49 | -8.615850e-47 |
| Msa1165360 | Msa1328320 | 0.800325 | 1.519315e-48 | -8.615850e-47 |
| Msa1203490 | Msa1328320 | 0.957824 | 1.062812e-115 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328320 | MtrunA17_Chr8g0374741 | 97.931 | 580 | 12 | 0 | 1 | 580 | 1 | 580 | 0.0 | 1166 |
| Msa1328320 | MtrunA17_Chr5g0402501 | 67.350 | 585 | 128 | 9 | 1 | 579 | 1 | 528 | 0.0 | 709 |
| Msa1328320 | MtrunA17_Chr1g0153951 | 49.466 | 562 | 247 | 7 | 23 | 583 | 8 | 533 | 1.99e-153 | 451 |
| Msa1328320 | MtrunA17_Chr3g0133631 | 47.887 | 568 | 230 | 12 | 23 | 583 | 48 | 556 | 1.22e-151 | 447 |
| Msa1328320 | MtrunA17_Chr4g0028651 | 33.857 | 573 | 322 | 16 | 33 | 572 | 121 | 669 | 1.87e-77 | 259 |
| Msa1328320 | MtrunA17_Chr5g0435281 | 41.077 | 297 | 151 | 4 | 284 | 559 | 178 | 471 | 4.04e-67 | 226 |
| Msa1328320 | MtrunA17_Chr8g0373901 | 26.335 | 562 | 357 | 9 | 37 | 569 | 66 | 599 | 5.40e-43 | 163 |
| Msa1328320 | MtrunA17_Chr5g0403231 | 28.952 | 563 | 324 | 16 | 40 | 569 | 77 | 596 | 2.44e-42 | 161 |
| Msa1328320 | MtrunA17_Chr5g0399331 | 26.786 | 392 | 250 | 9 | 202 | 571 | 175 | 551 | 4.63e-38 | 148 |
| Msa1328320 | MtrunA17_Chr4g0034351 | 31.373 | 306 | 174 | 8 | 264 | 545 | 269 | 562 | 3.26e-33 | 134 |
| Msa1328320 | MtrunA17_Chr3g0115381 | 33.505 | 194 | 116 | 6 | 358 | 545 | 528 | 714 | 1.50e-19 | 92.8 |
| Msa1328320 | MtrunA17_Chr1g0163291 | 29.050 | 179 | 111 | 7 | 383 | 554 | 396 | 565 | 1.24e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328320 | AT4G37080.2 | 59.024 | 615 | 191 | 12 | 1 | 578 | 1 | 591 | 0.0 | 625 |
| Msa1328320 | AT4G37080.3 | 59.024 | 615 | 191 | 12 | 1 | 578 | 1 | 591 | 0.0 | 625 |
| Msa1328320 | AT4G37080.1 | 60.781 | 589 | 184 | 11 | 13 | 578 | 14 | 578 | 0.0 | 624 |
| Msa1328320 | AT4G37080.4 | 59.136 | 509 | 161 | 11 | 13 | 498 | 27 | 511 | 7.96e-171 | 495 |
| Msa1328320 | AT5G42690.5 | 49.298 | 570 | 206 | 12 | 16 | 579 | 2 | 494 | 8.85e-149 | 439 |
| Msa1328320 | AT5G42690.2 | 48.870 | 575 | 214 | 11 | 7 | 579 | 25 | 521 | 6.34e-148 | 437 |
| Msa1328320 | AT5G42690.4 | 48.870 | 575 | 214 | 11 | 7 | 579 | 25 | 521 | 6.34e-148 | 437 |
| Msa1328320 | AT5G42690.1 | 49.043 | 575 | 212 | 12 | 7 | 579 | 25 | 520 | 4.00e-147 | 435 |
| Msa1328320 | AT5G42690.3 | 49.444 | 540 | 194 | 10 | 42 | 579 | 7 | 469 | 8.20e-142 | 420 |
| Msa1328320 | AT2G39690.2 | 40.317 | 315 | 161 | 7 | 284 | 580 | 96 | 401 | 5.45e-70 | 232 |
| Msa1328320 | AT2G39690.5 | 40.317 | 315 | 161 | 7 | 284 | 580 | 203 | 508 | 3.44e-69 | 233 |
| Msa1328320 | AT2G39690.4 | 40.317 | 315 | 161 | 7 | 284 | 580 | 177 | 482 | 3.58e-69 | 232 |
| Msa1328320 | AT2G39690.1 | 40.764 | 314 | 160 | 8 | 284 | 580 | 203 | 507 | 4.14e-69 | 233 |
| Msa1328320 | AT2G39690.8 | 40.764 | 314 | 160 | 8 | 284 | 580 | 177 | 481 | 4.31e-69 | 232 |
| Msa1328320 | AT3G12540.2 | 39.577 | 331 | 179 | 7 | 264 | 580 | 157 | 480 | 1.73e-65 | 223 |
| Msa1328320 | AT3G12540.1 | 39.506 | 324 | 177 | 6 | 264 | 575 | 224 | 540 | 2.40e-65 | 224 |
| Msa1328320 | AT5G60720.1 | 29.525 | 569 | 299 | 18 | 78 | 571 | 122 | 663 | 6.60e-57 | 203 |
| Msa1328320 | AT1G16750.1 | 33.333 | 330 | 175 | 8 | 285 | 574 | 178 | 502 | 3.76e-46 | 171 |
| Msa1328320 | AT2G39690.6 | 39.827 | 231 | 114 | 6 | 284 | 498 | 203 | 424 | 5.06e-43 | 160 |
| Msa1328320 | AT2G39690.7 | 40.435 | 230 | 113 | 7 | 284 | 498 | 203 | 423 | 5.32e-43 | 160 |
| Msa1328320 | AT3G13000.1 | 32.344 | 337 | 182 | 8 | 284 | 579 | 197 | 528 | 1.43e-42 | 161 |
| Msa1328320 | AT3G13000.3 | 32.344 | 337 | 182 | 8 | 284 | 579 | 226 | 557 | 1.59e-42 | 161 |
| Msa1328320 | AT3G13000.2 | 32.344 | 337 | 182 | 8 | 284 | 579 | 226 | 557 | 1.59e-42 | 161 |
| Msa1328320 | AT5G47380.4 | 29.739 | 306 | 187 | 7 | 280 | 573 | 274 | 563 | 2.23e-38 | 149 |
| Msa1328320 | AT5G47380.5 | 29.739 | 306 | 187 | 7 | 280 | 573 | 218 | 507 | 2.35e-38 | 149 |
| Msa1328320 | AT5G47380.1 | 29.739 | 306 | 187 | 7 | 280 | 573 | 274 | 563 | 2.72e-38 | 149 |
| Msa1328320 | AT2G23700.1 | 29.429 | 350 | 206 | 9 | 259 | 581 | 355 | 690 | 1.04e-36 | 145 |
| Msa1328320 | AT3G18900.5 | 32.890 | 301 | 173 | 5 | 277 | 569 | 223 | 502 | 1.38e-34 | 137 |
| Msa1328320 | AT3G18900.4 | 32.890 | 301 | 173 | 5 | 277 | 569 | 228 | 507 | 1.49e-34 | 137 |
| Msa1328320 | AT3G18900.6 | 32.890 | 301 | 173 | 5 | 277 | 569 | 147 | 426 | 1.87e-34 | 136 |
| Msa1328320 | AT3G18900.3 | 32.890 | 301 | 173 | 5 | 277 | 569 | 147 | 426 | 1.87e-34 | 136 |
| Msa1328320 | AT5G66600.14 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328320 | AT5G66600.1 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328320 | AT5G66600.4 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328320 | AT5G66600.9 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328320 | AT5G66600.3 | 29.712 | 313 | 191 | 5 | 280 | 569 | 278 | 584 | 1.33e-33 | 135 |
| Msa1328320 | AT5G66600.2 | 29.712 | 313 | 191 | 5 | 280 | 569 | 258 | 564 | 1.38e-33 | 135 |
| Msa1328320 | AT5G66600.7 | 29.712 | 313 | 191 | 5 | 280 | 569 | 224 | 530 | 1.92e-33 | 135 |
| Msa1328320 | AT2G39690.3 | 38.462 | 182 | 97 | 4 | 284 | 453 | 177 | 355 | 1.13e-32 | 129 |
| Msa1328320 | AT1G76620.1 | 27.301 | 326 | 196 | 9 | 284 | 581 | 193 | 505 | 1.75e-31 | 129 |
| Msa1328320 | AT1G43020.1 | 32.110 | 218 | 135 | 5 | 372 | 581 | 211 | 423 | 3.99e-27 | 114 |
| Msa1328320 | AT1G21060.2 | 27.541 | 305 | 193 | 6 | 282 | 573 | 185 | 474 | 1.93e-24 | 107 |
| Msa1328320 | AT1G21060.1 | 27.541 | 305 | 193 | 6 | 282 | 573 | 197 | 486 | 2.67e-24 | 107 |
| Msa1328320 | AT5G47380.2 | 29.787 | 235 | 137 | 7 | 279 | 501 | 273 | 491 | 1.00e-22 | 102 |
| Msa1328320 | AT1G16750.2 | 31.553 | 206 | 105 | 5 | 285 | 455 | 178 | 382 | 2.23e-22 | 100 |
| Msa1328320 | AT5G47380.3 | 30.000 | 230 | 133 | 7 | 280 | 497 | 274 | 487 | 3.79e-22 | 100 |
| Msa1328320 | AT5G66600.12 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 5.18e-22 | 100 |
| Msa1328320 | AT5G66600.11 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 5.18e-22 | 100 |
| Msa1328320 | AT5G66600.6 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 5.18e-22 | 100 |
| Msa1328320 | AT5G66600.13 | 29.752 | 242 | 142 | 4 | 280 | 498 | 278 | 514 | 5.18e-22 | 100 |
| Msa1328320 | AT4G08550.1 | 28.571 | 217 | 146 | 5 | 358 | 570 | 408 | 619 | 6.76e-18 | 87.8 |
| Msa1328320 | AT4G08550.2 | 28.571 | 217 | 146 | 5 | 358 | 570 | 462 | 673 | 9.76e-18 | 87.4 |
| Msa1328320 | AT3G18900.1 | 30.435 | 230 | 131 | 5 | 277 | 498 | 228 | 436 | 1.40e-17 | 86.3 |
| Msa1328320 | AT5G66600.10 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.48e-16 | 82.0 |
| Msa1328320 | AT5G66600.8 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.48e-16 | 82.0 |
| Msa1328320 | AT5G66600.5 | 28.877 | 187 | 115 | 2 | 280 | 450 | 278 | 462 | 3.48e-16 | 82.0 |
| Msa1328320 | AT5G66600.15 | 28.877 | 187 | 115 | 2 | 280 | 450 | 224 | 408 | 4.12e-16 | 81.6 |
| Msa1328320 | AT3G11920.1 | 32.749 | 171 | 111 | 4 | 386 | 554 | 426 | 594 | 1.36e-15 | 80.5 |
| Msa1328320 | AT3G18900.2 | 32.203 | 177 | 96 | 4 | 277 | 450 | 228 | 383 | 8.55e-15 | 77.0 |
| Msa1328320 | AT1G76620.2 | 24.896 | 241 | 145 | 7 | 284 | 498 | 193 | 423 | 3.98e-13 | 72.0 |
| Msa1328320 | AT1G43020.3 | 32.353 | 136 | 83 | 4 | 372 | 501 | 211 | 343 | 4.70e-13 | 71.2 |
Find 109 sgRNAs with CRISPR-Local
Find 267 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATATTTATTAATATTATTA+AGG | 0.143285 | 8_4:-45999870 | None:intergenic |
| TAAATCACTTATTCATTAAT+TGG | 0.167006 | 8_4:-46004840 | None:intergenic |
| TTCTTATTTCATCAGGTAAT+TGG | 0.190698 | 8_4:-46004721 | None:intergenic |
| TTGAGTGGAGATTTCTTTAA+AGG | 0.208758 | 8_4:-46001831 | None:intergenic |
| GTGAAAGCAAGAAGCATATT+TGG | 0.230491 | 8_4:+46003587 | Msa1328320:CDS |
| AATTACTTCTCATGTGGTTT+TGG | 0.235218 | 8_4:-46001524 | None:intergenic |
| AAAGGACCTTGATTCTTTAT+TGG | 0.238431 | 8_4:+46004685 | Msa1328320:CDS |
| AGATCTTCTGAAACTCTATT+TGG | 0.238770 | 8_4:-46002133 | None:intergenic |
| TGGACCAACTTCTCTTGTTT+TGG | 0.239386 | 8_4:-46002308 | None:intergenic |
| ACAACCATTTCCGGACTTTC+CGG | 0.243264 | 8_4:-46003139 | None:intergenic |
| AAGAATTTATGTGAAATTAA+AGG | 0.244278 | 8_4:+46002334 | Msa1328320:CDS |
| ATTTCACATAAATTCTTATA+TGG | 0.245460 | 8_4:-46002328 | None:intergenic |
| TTGGAAGTGTACTTCGAATA+TGG | 0.263651 | 8_4:+46004993 | Msa1328320:three_prime_UTR |
| AATAATTACAGTGGGAATAA+TGG | 0.270800 | 8_4:+46001675 | Msa1328320:CDS |
| AAACATTGCATTTGTTGTTC+TGG | 0.321552 | 8_4:-46002374 | None:intergenic |
| ATTAATGCTACAACCATTTC+CGG | 0.323435 | 8_4:-46003148 | None:intergenic |
| CTTTCTGCTAGAAGCACTTC+TGG | 0.331481 | 8_4:-46001628 | None:intergenic |
| TCTAACATATTTGTGAGAAT+TGG | 0.347512 | 8_4:+46002169 | Msa1328320:CDS |
| ATATTTATTAATATTATTAA+GGG | 0.356914 | 8_4:-45999869 | None:intergenic |
| AAGAGCATTTACAAGACCTT+TGG | 0.361369 | 8_4:+46000917 | Msa1328320:CDS |
| ATAATTACAGTGGGAATAAT+GGG | 0.374737 | 8_4:+46001676 | Msa1328320:CDS |
| CATGGATCAATTAAAGTTGC+AGG | 0.385031 | 8_4:+46001875 | Msa1328320:CDS |
| GCTTGGTTTCTTATTTCATC+AGG | 0.387730 | 8_4:-46004728 | None:intergenic |
| CTTCAAGGCATTTAACTGCT+TGG | 0.390658 | 8_4:-46004745 | None:intergenic |
| ACTCACTTTCCCTTCCTTCA+AGG | 0.391301 | 8_4:-46004760 | None:intergenic |
| AGAGCATTTACAAGACCTTT+GGG | 0.393492 | 8_4:+46000918 | Msa1328320:CDS |
| ATTATCTGCTGGTGAATTTG+AGG | 0.414829 | 8_4:-46002086 | None:intergenic |
| ACTTGCTTCTTTGAACTTGA+AGG | 0.419293 | 8_4:+46002671 | Msa1328320:CDS |
| GATTATTTACAAGCTTCAAT+TGG | 0.420391 | 8_4:+46004599 | Msa1328320:CDS |
| CAAGCAGTTAAATGCCTTGA+AGG | 0.420884 | 8_4:+46004746 | Msa1328320:CDS |
| GATACTAATTCCCAAGTTGT+TGG | 0.421968 | 8_4:+46004640 | Msa1328320:CDS |
| ACCTTGATTCTTTATTGGAC+TGG | 0.422533 | 8_4:+46004690 | Msa1328320:CDS |
| AATATTATTAAGGGTGATGT+TGG | 0.424785 | 8_4:-45999860 | None:intergenic |
| AAAGTGAGTCTCTTTCAAAA+TGG | 0.432212 | 8_4:+46004774 | Msa1328320:CDS |
| ATTGTGGACTTACAAACTTA+AGG | 0.436584 | 8_4:-46003387 | None:intergenic |
| GTAAAATTCAGGTACCTACT+TGG | 0.436814 | 8_4:+46002645 | Msa1328320:intron |
| ATGTGGAAAGCAGGAGAAGA+TGG | 0.444562 | 8_4:+46000676 | Msa1328320:intron |
| GGAAAGTGCAAATGTTACTA+AGG | 0.447874 | 8_4:-46003627 | None:intergenic |
| ACTTACAAACTTAAGGTGAT+AGG | 0.449376 | 8_4:-46003380 | None:intergenic |
| TAATTCCCAAGTTGTTGGAT+TGG | 0.451039 | 8_4:+46004645 | Msa1328320:CDS |
| GATTCTGAACAGATATCATA+AGG | 0.452530 | 8_4:-46002286 | None:intergenic |
| CTTGCTTCTTTGAACTTGAA+GGG | 0.457672 | 8_4:+46002672 | Msa1328320:CDS |
| CTTACAAACTTAAGGTGATA+GGG | 0.461257 | 8_4:-46003379 | None:intergenic |
| TCTGACACTTTATTATCTGC+TGG | 0.461649 | 8_4:-46002097 | None:intergenic |
| CAGGAGAAGATGGAAGGAGG+AGG | 0.462824 | 8_4:+46000686 | Msa1328320:intron |
| CTGTAATTATTGACAGTGTC+AGG | 0.470070 | 8_4:-46001663 | None:intergenic |
| CTGCAACTTTAATTGATCCA+TGG | 0.472815 | 8_4:-46001874 | None:intergenic |
| AACCTGAAACTAAAATCATA+AGG | 0.475747 | 8_4:-46004808 | None:intergenic |
| AAGAAGCAAGTTTCCCAAGT+AGG | 0.475798 | 8_4:-46002659 | None:intergenic |
| TTTGGTTGCCTTAGCTGGAA+TGG | 0.476109 | 8_4:+46002032 | Msa1328320:intron |
| ACATGGCATACCGGAAAGTC+CGG | 0.480935 | 8_4:+46003129 | Msa1328320:CDS |
| ATGGAAGGAGGAGGGAGCAA+AGG | 0.484168 | 8_4:+46000695 | Msa1328320:CDS |
| CATACCGGAAAGTCCGGAAA+TGG | 0.487177 | 8_4:+46003135 | Msa1328320:CDS |
| CTAACATATGGAGGAAGATA+AGG | 0.489236 | 8_4:-46000960 | None:intergenic |
| GAATCCAAAACAAGAGAAGT+TGG | 0.490044 | 8_4:+46002304 | Msa1328320:CDS |
| TCTAGCTGAGGTGGCAGTGT+TGG | 0.492182 | 8_4:+46001386 | Msa1328320:CDS |
| TTTCAGGCAACAATAGTAGT+AGG | 0.492409 | 8_4:+46003307 | Msa1328320:intron |
| CAGTTAAATGCCTTGAAGGA+AGG | 0.493380 | 8_4:+46004750 | Msa1328320:CDS |
| TTGCACTTTCCTGTGGAAGT+TGG | 0.498705 | 8_4:+46003639 | Msa1328320:CDS |
| GGTTGTAGCATTAATGCAAA+AGG | 0.498874 | 8_4:+46003156 | Msa1328320:CDS |
| AAATAAGACCCAGAAGTTGA+AGG | 0.499068 | 8_4:-46002226 | None:intergenic |
| AGCAAGAAGCATATTTGGAC+TGG | 0.499364 | 8_4:+46003592 | Msa1328320:CDS |
| GGCAGTGTTGGAAGAAGAAG+TGG | 0.508158 | 8_4:+46001398 | Msa1328320:CDS |
| TGTTGGAAGAAGAAGTGGTT+AGG | 0.511515 | 8_4:+46001403 | Msa1328320:CDS |
| GGAGATTATCAGAACATGAA+AGG | 0.515426 | 8_4:+46002053 | Msa1328320:CDS |
| TAAATACCAATCCAACAACT+TGG | 0.518404 | 8_4:-46004651 | None:intergenic |
| CATCTATACAAGAAGAAGGA+AGG | 0.518813 | 8_4:+46001730 | Msa1328320:CDS |
| GAGATTATCAGAACATGAAA+GGG | 0.519637 | 8_4:+46002054 | Msa1328320:CDS |
| AGTTAAATGCCTTGAAGGAA+GGG | 0.523554 | 8_4:+46004751 | Msa1328320:CDS |
| TCCAGTCCAATAAAGAATCA+AGG | 0.524058 | 8_4:-46004691 | None:intergenic |
| ATCTATACAAGAAGAAGGAA+GGG | 0.524855 | 8_4:+46001731 | Msa1328320:CDS |
| TTCAGGTAGATAAGTTGAAG+AGG | 0.528029 | 8_4:+46000856 | Msa1328320:intron |
| TAAAATTCAGGTACCTACTT+GGG | 0.539959 | 8_4:+46002646 | Msa1328320:intron |
| GGAAAGCAGGAGAAGATGGA+AGG | 0.544627 | 8_4:+46000680 | Msa1328320:intron |
| GACATTGGAACTTCTAGCTG+AGG | 0.548247 | 8_4:+46001374 | Msa1328320:intron |
| GCTTTGAATTACTTCTCATG+TGG | 0.555149 | 8_4:-46001530 | None:intergenic |
| AAGCAGGAGAAGATGGAAGG+AGG | 0.556298 | 8_4:+46000683 | Msa1328320:intron |
| ACTGAGAGAGTAGAAGAAGG+AGG | 0.559818 | 8_4:-45999784 | None:intergenic |
| TGAGCTGATTCATGTTTGAG+TGG | 0.563105 | 8_4:-46001846 | None:intergenic |
| TTCTCATCTATACAAGAAGA+AGG | 0.568329 | 8_4:+46001726 | Msa1328320:CDS |
| TGTGAGAATTGGTACATCCA+AGG | 0.569116 | 8_4:+46002180 | Msa1328320:CDS |
| CAAGTTGTGAATTTCAGACA+AGG | 0.573745 | 8_4:+46001435 | Msa1328320:CDS |
| TCTATACAAGAAGAAGGAAG+GGG | 0.575452 | 8_4:+46001732 | Msa1328320:CDS |
| AAGTGATTTATTAGTGTGTG+TGG | 0.575704 | 8_4:+46004853 | Msa1328320:three_prime_UTR |
| GGAAGATAAGGCGGAAGACG+AGG | 0.581353 | 8_4:-46000948 | None:intergenic |
| AAGACTGAGAGAGTAGAAGA+AGG | 0.582005 | 8_4:-45999787 | None:intergenic |
| GTAACATTTGCACTTTCCTG+TGG | 0.584614 | 8_4:+46003632 | Msa1328320:CDS |
| GAAGCATATTTGGACTGGAA+TGG | 0.585611 | 8_4:+46003597 | Msa1328320:CDS |
| TGAATCAGCTCAGAAGTCCA+TGG | 0.591207 | 8_4:+46001857 | Msa1328320:CDS |
| GAAAGTGCAAATGTTACTAA+GGG | 0.594562 | 8_4:-46003626 | None:intergenic |
| AGGAGAAGATGGAAGGAGGA+GGG | 0.595319 | 8_4:+46000687 | Msa1328320:intron |
| TGTTCTGGTGAGATCAACAT+TGG | 0.595419 | 8_4:-46002359 | None:intergenic |
| ATACTTAGAACATGGCATAC+CGG | 0.606507 | 8_4:+46003120 | Msa1328320:CDS |
| AAATACCAATCCAACAACTT+GGG | 0.609275 | 8_4:-46004650 | None:intergenic |
| ATTGGAACTTCTAGCTGAGG+TGG | 0.610303 | 8_4:+46001377 | Msa1328320:CDS |
| CGATGACTTACTTCAATCTG+TGG | 0.611618 | 8_4:-46002402 | None:intergenic |
| TTACAAACTTAAGGTGATAG+GGG | 0.614980 | 8_4:-46003378 | None:intergenic |
| TTATTTCAGCCAATGTAGCA+AGG | 0.617147 | 8_4:+46002243 | Msa1328320:CDS |
| GGGTGAAGACCAACTTCCAC+AGG | 0.617768 | 8_4:-46003648 | None:intergenic |
| AGAGAGAGACTAACATATGG+AGG | 0.635286 | 8_4:-46000969 | None:intergenic |
| GACACTGTCAATAATTACAG+TGG | 0.635952 | 8_4:+46001666 | Msa1328320:CDS |
| ACACTGTCAATAATTACAGT+GGG | 0.639622 | 8_4:+46001667 | Msa1328320:CDS |
| AATTTAATTCAATGACAACA+AGG | 0.640125 | 8_4:+46001583 | Msa1328320:CDS |
| CTGGCAAGAGAATTCTGTGG+TGG | 0.650669 | 8_4:-46001609 | None:intergenic |
| TTGTAGGCATACTTAGAACA+TGG | 0.651116 | 8_4:+46003112 | Msa1328320:intron |
| CAGGCAACAATAGTAGTAGG+AGG | 0.658457 | 8_4:+46003310 | Msa1328320:intron |
| ACATATGGAGGAAGATAAGG+CGG | 0.675886 | 8_4:-46000957 | None:intergenic |
| AGACGAGGCAAAGATCCCAA+AGG | 0.692046 | 8_4:-46000933 | None:intergenic |
| CTTCTGGCAAGAGAATTCTG+TGG | 0.743682 | 8_4:-46001612 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTTATTAATATTATTAA+GGG | - | chr8_4:45999872-45999891 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTGGTTTAAATA+AGG | + | chr8_4:46004523-46004542 | Msa1328320:intron | 10.0% |
| !!! | AACATTATTTAATGTTTTTT+TGG | - | chr8_4:46004924-46004943 | None:intergenic | 10.0% |
| !! | AAAAAACATTAAATAATGTT+TGG | + | chr8_4:46004924-46004943 | Msa1328320:three_prime_UTR | 10.0% |
| !!! | TTTTAATATTTCTATGTTGT+TGG | + | chr8_4:46000295-46000314 | Msa1328320:intron | 15.0% |
| !!! | AATTTTGAAAAACTATGTTT+TGG | + | chr8_4:46000367-46000386 | Msa1328320:intron | 15.0% |
| !!! | TTTGTTTAATCTTTTTGTTT+TGG | + | chr8_4:46002014-46002033 | Msa1328320:intron | 15.0% |
| !! | ATTTCACATAAATTCTTATA+TGG | - | chr8_4:46002331-46002350 | None:intergenic | 15.0% |
| !! | AAGAATTTATGTGAAATTAA+AGG | + | chr8_4:46002334-46002353 | Msa1328320:CDS | 15.0% |
| !! | TTATCATCATTAAGTTTATT+TGG | - | chr8_4:46002966-46002985 | None:intergenic | 15.0% |
| !! | AATAAACTTAATGATGATAA+AGG | + | chr8_4:46002966-46002985 | Msa1328320:intron | 15.0% |
| !!! | GTTATCACTTTAAAATATTT+TGG | + | chr8_4:46003081-46003100 | Msa1328320:intron | 15.0% |
| !! | AAACTATAAAATCAAAAGAA+AGG | - | chr8_4:46003418-46003437 | None:intergenic | 15.0% |
| !! | GAAATAAAGATAGAAATTAA+GGG | - | chr8_4:46003528-46003547 | None:intergenic | 15.0% |
| !!! | TTTTCTTTTACTTAAATCAA+TGG | + | chr8_4:46003707-46003726 | Msa1328320:intron | 15.0% |
| !!! | AATTAAATTTTGAGTGAAAT+AGG | - | chr8_4:46004255-46004274 | None:intergenic | 15.0% |
| !! | TAAATCACTTATTCATTAAT+TGG | - | chr8_4:46004843-46004862 | None:intergenic | 15.0% |
| !! | AAATGAAATGATTATTGTAG+CGG | - | chr8_4:45999968-45999987 | None:intergenic | 20.0% |
| !!! | AAAGAACAAGATTTTAGATT+TGG | - | chr8_4:46000550-46000569 | None:intergenic | 20.0% |
| !! | CGAAGAATTTAGTATATATT+TGG | + | chr8_4:46001000-46001019 | Msa1328320:intron | 20.0% |
| !!! | TTTTAGCTTCAATAAAATCA+CGG | - | chr8_4:46001189-46001208 | None:intergenic | 20.0% |
| !!! | TTGTTTTTGAAGTTGATTTT+TGG | + | chr8_4:46001319-46001338 | Msa1328320:intron | 20.0% |
| !! | AATTTAATTCAATGACAACA+AGG | + | chr8_4:46001583-46001602 | Msa1328320:CDS | 20.0% |
| !! | TGTCAGTATAATTACAATAT+TGG | - | chr8_4:46002463-46002482 | None:intergenic | 20.0% |
| !!! | TAATCTTTTGTGTAAAATTC+AGG | + | chr8_4:46002634-46002653 | Msa1328320:intron | 20.0% |
| !!! | TATTTTGGTTTTCATATTGT+AGG | + | chr8_4:46003096-46003115 | Msa1328320:intron | 20.0% |
| !! | GGAAATAAAGATAGAAATTA+AGG | - | chr8_4:46003529-46003548 | None:intergenic | 20.0% |
| !!! | ACTTTTGGTATAATTATGTT+TGG | + | chr8_4:46003941-46003960 | Msa1328320:intron | 20.0% |
| !!! | AAGTTATTTTGACTTTACTT+CGG | - | chr8_4:46003996-46004015 | None:intergenic | 20.0% |
| !!! | GTTTTCCATTTTTTACTTTT+AGG | + | chr8_4:46004288-46004307 | Msa1328320:intron | 20.0% |
| !! | TTGATCCTAAAAGTAAAAAA+TGG | - | chr8_4:46004296-46004315 | None:intergenic | 20.0% |
| !! | AATAAATATGGATTTGTGTT+AGG | - | chr8_4:46004427-46004446 | None:intergenic | 20.0% |
| !! | ATTAAATTATATTGCACTGA+AGG | + | chr8_4:46004493-46004512 | Msa1328320:intron | 20.0% |
| !!! | AAGGAGCAATATTTTTTTTT+TGG | + | chr8_4:46004512-46004531 | Msa1328320:intron | 20.0% |
| !!! | TGGATATTTTTTTTGTACAA+TGG | + | chr8_4:46004873-46004892 | Msa1328320:three_prime_UTR | 20.0% |
| !!! | TGAAAAATCACATGTATTTT+TGG | + | chr8_4:46004974-46004993 | Msa1328320:three_prime_UTR | 20.0% |
| ! | AATATTATTAAGGGTGATGT+TGG | - | chr8_4:45999863-45999882 | None:intergenic | 25.0% |
| ! | AATGAAATGATTATTGTAGC+GGG | - | chr8_4:45999967-45999986 | None:intergenic | 25.0% |
| !! | AAGAAAAGAGCTACTTTAAT+AGG | + | chr8_4:46000427-46000446 | Msa1328320:intron | 25.0% |
| !!! | GTTTTGTTTATTGTTGAATG+TGG | + | chr8_4:46000659-46000678 | Msa1328320:intron | 25.0% |
| !! | AAATGTAGCTTTTATCTATG+TGG | + | chr8_4:46001208-46001227 | Msa1328320:intron | 25.0% |
| !!! | TGTGTTATTGTTTTAGACAT+TGG | + | chr8_4:46001359-46001378 | Msa1328320:intron | 25.0% |
| !! | AATAGGGTCATTCAAATTTT+CGG | - | chr8_4:46001502-46001521 | None:intergenic | 25.0% |
| ! | AATAATTACAGTGGGAATAA+TGG | + | chr8_4:46001675-46001694 | Msa1328320:CDS | 25.0% |
| ! | ATAATTACAGTGGGAATAAT+GGG | + | chr8_4:46001676-46001695 | Msa1328320:CDS | 25.0% |
| !! | AGTTTAGATATTTTCTTCAC+TGG | - | chr8_4:46001804-46001823 | None:intergenic | 25.0% |
| !!! | CTATTTTAAACTATGAAGCA+CGG | - | chr8_4:46001955-46001974 | None:intergenic | 25.0% |
| ! | TCTAACATATTTGTGAGAAT+TGG | + | chr8_4:46002169-46002188 | Msa1328320:CDS | 25.0% |
| ! | TCATCATTAAGTTTATTTGG+CGG | - | chr8_4:46002963-46002982 | None:intergenic | 25.0% |
| ! | TTTAAAAAAACCGAACCAAA+TGG | - | chr8_4:46003017-46003036 | None:intergenic | 25.0% |
| ! | ATTGACCTATTACAATTTCA+GGG | - | chr8_4:46003818-46003837 | None:intergenic | 25.0% |
| ! | TATGTTTGGTAAAAAAACCT+AGG | + | chr8_4:46003955-46003974 | Msa1328320:intron | 25.0% |
| !! | TTGTGTGTGATAATTTTGTT+GGG | - | chr8_4:46004022-46004041 | None:intergenic | 25.0% |
| !! | ATTGTGTGTGATAATTTTGT+TGG | - | chr8_4:46004023-46004042 | None:intergenic | 25.0% |
| ! | TTGCTAATTCGTAAAATTCA+AGG | + | chr8_4:46004184-46004203 | Msa1328320:intron | 25.0% |
| ! | TAATTCGTAAAATTCAAGGA+TGG | + | chr8_4:46004188-46004207 | Msa1328320:intron | 25.0% |
| !!! | TTTTTGGTTTAAATAAGGTG+AGG | + | chr8_4:46004528-46004547 | Msa1328320:intron | 25.0% |
| !!! | TTTTGGTTTAAATAAGGTGA+GGG | + | chr8_4:46004529-46004548 | Msa1328320:intron | 25.0% |
| ! | GATTATTTACAAGCTTCAAT+TGG | + | chr8_4:46004599-46004618 | Msa1328320:CDS | 25.0% |
| !! | GTATTTACTAGATTTTGCAA+AGG | + | chr8_4:46004667-46004686 | Msa1328320:CDS | 25.0% |
| !! | TTCTTATTTCATCAGGTAAT+TGG | - | chr8_4:46004724-46004743 | None:intergenic | 25.0% |
| ! | AACCTGAAACTAAAATCATA+AGG | - | chr8_4:46004811-46004830 | None:intergenic | 25.0% |
| !!! | TTTTTCAGAAATGTGTCATA+GGG | - | chr8_4:46004961-46004980 | None:intergenic | 25.0% |
| !!! | ATTTTTCAGAAATGTGTCAT+AGG | - | chr8_4:46004962-46004981 | None:intergenic | 25.0% |
| ! | CTGAAACACTTTTCTTTTCT+TGG | + | chr8_4:45999737-45999756 | Msa1328320:five_prime_UTR | 30.0% |
| ! | AACCTAGCATTTTTCTTTTC+TGG | + | chr8_4:45999916-45999935 | Msa1328320:intron | 30.0% |
| ! | ACCTAGCATTTTTCTTTTCT+GGG | + | chr8_4:45999917-45999936 | Msa1328320:intron | 30.0% |
| !! | CATTGTTTTCTGAGAAAAAG+TGG | + | chr8_4:46000154-46000173 | Msa1328320:five_prime_UTR | 30.0% |
| ATTTCTATGTTGTTGGAAAG+TGG | + | chr8_4:46000302-46000321 | Msa1328320:intron | 30.0% | |
| TACTTTAATAGGTACAAGCA+TGG | + | chr8_4:46000438-46000457 | Msa1328320:intron | 30.0% | |
| ATAGTAATTATGAAGCCTCA+TGG | + | chr8_4:46000489-46000508 | Msa1328320:intron | 30.0% | |
| !!! | TAGTGATGTTTTGAAAGCTT+TGG | + | chr8_4:46000832-46000851 | Msa1328320:intron | 30.0% |
| ! | AATTACTTCTCATGTGGTTT+TGG | - | chr8_4:46001527-46001546 | None:intergenic | 30.0% |
| ACACTGTCAATAATTACAGT+GGG | + | chr8_4:46001667-46001686 | Msa1328320:CDS | 30.0% | |
| TTCTCATCTATACAAGAAGA+AGG | + | chr8_4:46001726-46001745 | Msa1328320:CDS | 30.0% | |
| ATCTATACAAGAAGAAGGAA+GGG | + | chr8_4:46001731-46001750 | Msa1328320:CDS | 30.0% | |
| TTGAGTGGAGATTTCTTTAA+AGG | - | chr8_4:46001834-46001853 | None:intergenic | 30.0% | |
| AGGTAATTACACTTATGTGT+CGG | + | chr8_4:46001895-46001914 | Msa1328320:intron | 30.0% | |
| GAGATTATCAGAACATGAAA+GGG | + | chr8_4:46002054-46002073 | Msa1328320:CDS | 30.0% | |
| !! | AGATCTTCTGAAACTCTATT+TGG | - | chr8_4:46002136-46002155 | None:intergenic | 30.0% |
| TACATCCAAGGAAAAATTTG+TGG | + | chr8_4:46002192-46002211 | Msa1328320:CDS | 30.0% | |
| ! | TGATTCCACAAATTTTTCCT+TGG | - | chr8_4:46002200-46002219 | None:intergenic | 30.0% |
| GATTCTGAACAGATATCATA+AGG | - | chr8_4:46002289-46002308 | None:intergenic | 30.0% | |
| !! | AAACATTGCATTTGTTGTTC+TGG | - | chr8_4:46002377-46002396 | None:intergenic | 30.0% |
| TAAAATTCAGGTACCTACTT+GGG | + | chr8_4:46002646-46002665 | Msa1328320:intron | 30.0% | |
| ! | AGAATGCAAGTTTTTCTTGA+TGG | - | chr8_4:46002704-46002723 | None:intergenic | 30.0% |
| ATCAAGAAAAACTTGCATTC+TGG | + | chr8_4:46002703-46002722 | Msa1328320:CDS | 30.0% | |
| ATTAATGCTACAACCATTTC+CGG | - | chr8_4:46003151-46003170 | None:intergenic | 30.0% | |
| GAGAACAAATACATATTCAG+AGG | - | chr8_4:46003272-46003291 | None:intergenic | 30.0% | |
| TTACAAACTTAAGGTGATAG+GGG | - | chr8_4:46003381-46003400 | None:intergenic | 30.0% | |
| CTTACAAACTTAAGGTGATA+GGG | - | chr8_4:46003382-46003401 | None:intergenic | 30.0% | |
| ACTTACAAACTTAAGGTGAT+AGG | - | chr8_4:46003383-46003402 | None:intergenic | 30.0% | |
| ATTGTGGACTTACAAACTTA+AGG | - | chr8_4:46003390-46003409 | None:intergenic | 30.0% | |
| CAAAAGAAAGGACAAAATTG+TGG | - | chr8_4:46003406-46003425 | None:intergenic | 30.0% | |
| ! | GTTAATTGCAACATGCTTTT+AGG | - | chr8_4:46003501-46003520 | None:intergenic | 30.0% |
| !!! | TCATCATTTTTTGCAGCTTT+TGG | - | chr8_4:46003566-46003585 | None:intergenic | 30.0% |
| ! | GAAAGTGCAAATGTTACTAA+GGG | - | chr8_4:46003629-46003648 | None:intergenic | 30.0% |
| TAAAGTTGAGAAACATACTG+CGG | - | chr8_4:46003672-46003691 | None:intergenic | 30.0% | |
| !!! | AGCACAGTACTCTTTTTTTT+TGG | + | chr8_4:46003738-46003757 | Msa1328320:intron | 30.0% |
| TTTGTCCCTGAAATTGTAAT+AGG | + | chr8_4:46003810-46003829 | Msa1328320:intron | 30.0% | |
| GATTGACCTATTACAATTTC+AGG | - | chr8_4:46003819-46003838 | None:intergenic | 30.0% | |
| ACATAACATTGTCTAACAGA+AGG | - | chr8_4:46003850-46003869 | None:intergenic | 30.0% | |
| ! | CAATGGACGAAATTAACTTT+TGG | + | chr8_4:46003926-46003945 | Msa1328320:intron | 30.0% |
| GGAAATAAAAAGTAACTCCT+AGG | - | chr8_4:46003975-46003994 | None:intergenic | 30.0% | |
| TGCTACATCTTCATTTAATG+TGG | + | chr8_4:46004086-46004105 | Msa1328320:intron | 30.0% | |
| AGTTTAGCTATTAGACAACA+TGG | - | chr8_4:46004116-46004135 | None:intergenic | 30.0% | |
| ! | AACCTAACTTCCTAAACTTT+TGG | - | chr8_4:46004383-46004402 | None:intergenic | 30.0% |
| TAGGAAGTTAGGTTAATGAA+TGG | + | chr8_4:46004389-46004408 | Msa1328320:intron | 30.0% | |
| CCACATGCAGAAAATAAATA+TGG | - | chr8_4:46004439-46004458 | None:intergenic | 30.0% | |
| !! | CCATATTTATTTTCTGCATG+TGG | + | chr8_4:46004436-46004455 | Msa1328320:intron | 30.0% |
| AAATACCAATCCAACAACTT+GGG | - | chr8_4:46004653-46004672 | None:intergenic | 30.0% | |
| TAAATACCAATCCAACAACT+TGG | - | chr8_4:46004654-46004673 | None:intergenic | 30.0% | |
| AAAGGACCTTGATTCTTTAT+TGG | + | chr8_4:46004685-46004704 | Msa1328320:CDS | 30.0% | |
| AAAGTGAGTCTCTTTCAAAA+TGG | + | chr8_4:46004774-46004793 | Msa1328320:CDS | 30.0% | |
| !!! | AGCCTTATGATTTTAGTTTC+AGG | + | chr8_4:46004806-46004825 | Msa1328320:three_prime_UTR | 30.0% |
| AAGTGATTTATTAGTGTGTG+TGG | + | chr8_4:46004853-46004872 | Msa1328320:three_prime_UTR | 30.0% | |
| ACCCAGAAAAGAAAAATGCT+AGG | - | chr8_4:45999921-45999940 | None:intergenic | 35.0% | |
| GGGAAAACTGAATGTAAAAC+GGG | - | chr8_4:45999947-45999966 | None:intergenic | 35.0% | |
| CGGGAAAACTGAATGTAAAA+CGG | - | chr8_4:45999948-45999967 | None:intergenic | 35.0% | |
| CTCATGGTTAACTGACAAAA+GGG | + | chr8_4:46000505-46000524 | Msa1328320:intron | 35.0% | |
| TATTGTTGAATGTGGAAAGC+AGG | + | chr8_4:46000667-46000686 | Msa1328320:intron | 35.0% | |
| !!! | GTTTTGAAAGCTTTGGTTTC+AGG | + | chr8_4:46000839-46000858 | Msa1328320:intron | 35.0% |
| ! | TTCAGGTAGATAAGTTGAAG+AGG | + | chr8_4:46000856-46000875 | Msa1328320:intron | 35.0% |
| !! | AAGAGCATTTACAAGACCTT+TGG | + | chr8_4:46000917-46000936 | Msa1328320:CDS | 35.0% |
| ! | AGAGCATTTACAAGACCTTT+GGG | + | chr8_4:46000918-46000937 | Msa1328320:CDS | 35.0% |
| CTAACATATGGAGGAAGATA+AGG | - | chr8_4:46000963-46000982 | None:intergenic | 35.0% | |
| AAGAGAGAGAGACTAACATA+TGG | - | chr8_4:46000975-46000994 | None:intergenic | 35.0% | |
| TGAGTTTGACAAAACCAAAG+TGG | + | chr8_4:46001161-46001180 | Msa1328320:intron | 35.0% | |
| CTCATTGTCAGATGCATATT+TGG | - | chr8_4:46001256-46001275 | None:intergenic | 35.0% | |
| CAAGTTGTGAATTTCAGACA+AGG | + | chr8_4:46001435-46001454 | Msa1328320:CDS | 35.0% | |
| !!! | TCATGTGGTTTTGGTCAATA+GGG | - | chr8_4:46001518-46001537 | None:intergenic | 35.0% |
| ! | GCTTTGAATTACTTCTCATG+TGG | - | chr8_4:46001533-46001552 | None:intergenic | 35.0% |
| CTGTAATTATTGACAGTGTC+AGG | - | chr8_4:46001666-46001685 | None:intergenic | 35.0% | |
| GACACTGTCAATAATTACAG+TGG | + | chr8_4:46001666-46001685 | Msa1328320:CDS | 35.0% | |
| CATCTATACAAGAAGAAGGA+AGG | + | chr8_4:46001730-46001749 | Msa1328320:CDS | 35.0% | |
| TCTATACAAGAAGAAGGAAG+GGG | + | chr8_4:46001732-46001751 | Msa1328320:CDS | 35.0% | |
| CTGCAACTTTAATTGATCCA+TGG | - | chr8_4:46001877-46001896 | None:intergenic | 35.0% | |
| CATGGATCAATTAAAGTTGC+AGG | + | chr8_4:46001875-46001894 | Msa1328320:CDS | 35.0% | |
| GGTAATTACACTTATGTGTC+GGG | + | chr8_4:46001896-46001915 | Msa1328320:intron | 35.0% | |
| GTAATTACACTTATGTGTCG+GGG | + | chr8_4:46001897-46001916 | Msa1328320:intron | 35.0% | |
| GGAGATTATCAGAACATGAA+AGG | + | chr8_4:46002053-46002072 | Msa1328320:CDS | 35.0% | |
| ATTATCTGCTGGTGAATTTG+AGG | - | chr8_4:46002089-46002108 | None:intergenic | 35.0% | |
| TCTGACACTTTATTATCTGC+TGG | - | chr8_4:46002100-46002119 | None:intergenic | 35.0% | |
| TCAAAAACACCTTCAACTTC+TGG | + | chr8_4:46002217-46002236 | Msa1328320:CDS | 35.0% | |
| CAAAAACACCTTCAACTTCT+GGG | + | chr8_4:46002218-46002237 | Msa1328320:CDS | 35.0% | |
| AAATAAGACCCAGAAGTTGA+AGG | - | chr8_4:46002229-46002248 | None:intergenic | 35.0% | |
| TTATTTCAGCCAATGTAGCA+AGG | + | chr8_4:46002243-46002262 | Msa1328320:CDS | 35.0% | |
| ! | GATCTTTTTCCTTGCTACAT+TGG | - | chr8_4:46002255-46002274 | None:intergenic | 35.0% |
| GAATCCAAAACAAGAGAAGT+TGG | + | chr8_4:46002304-46002323 | Msa1328320:CDS | 35.0% | |
| TTGAATATAACCAGACGTGT+CGG | + | chr8_4:46002525-46002544 | Msa1328320:intron | 35.0% | |
| CTTTAGATTGAAGATGTGTC+TGG | - | chr8_4:46002560-46002579 | None:intergenic | 35.0% | |
| TCGTGTTAGTTACTAACTGT+TGG | + | chr8_4:46002582-46002601 | Msa1328320:intron | 35.0% | |
| GTAAAATTCAGGTACCTACT+TGG | + | chr8_4:46002645-46002664 | Msa1328320:intron | 35.0% | |
| ACTTGCTTCTTTGAACTTGA+AGG | + | chr8_4:46002671-46002690 | Msa1328320:CDS | 35.0% | |
| CTTGCTTCTTTGAACTTGAA+GGG | + | chr8_4:46002672-46002691 | Msa1328320:CDS | 35.0% | |
| GGTAAATCATTGTGACAGAA+AGG | - | chr8_4:46002767-46002786 | None:intergenic | 35.0% | |
| CACACCTATAATTACAATGC+CGG | + | chr8_4:46002786-46002805 | Msa1328320:intron | 35.0% | |
| TAGTCCGGCATTGTAATTAT+AGG | - | chr8_4:46002793-46002812 | None:intergenic | 35.0% | |
| ATAGACCAAACTCTTTAGTC+CGG | - | chr8_4:46002808-46002827 | None:intergenic | 35.0% | |
| TTACAGTTCAATGTCTGGTT+CGG | - | chr8_4:46002879-46002898 | None:intergenic | 35.0% | |
| ACATTGAACTGTAAGTCCTT+TGG | + | chr8_4:46002885-46002904 | Msa1328320:intron | 35.0% | |
| ACGGTTGAACTATTATCCAA+AGG | - | chr8_4:46002904-46002923 | None:intergenic | 35.0% | |
| !!! | GTTTGATAGTAGTTTTGTCC+CGG | - | chr8_4:46002941-46002960 | None:intergenic | 35.0% |
| AGGCAGATTCAAAGTTCAAT+CGG | + | chr8_4:46002986-46003005 | Msa1328320:intron | 35.0% | |
| !!! | GGTTCGGTTTTTTTAAACAC+CGG | + | chr8_4:46003020-46003039 | Msa1328320:intron | 35.0% |
| CTCTTGACTGCAAGAATATT+TGG | - | chr8_4:46003062-46003081 | None:intergenic | 35.0% | |
| TTGTAGGCATACTTAGAACA+TGG | + | chr8_4:46003112-46003131 | Msa1328320:intron | 35.0% | |
| ATACTTAGAACATGGCATAC+CGG | + | chr8_4:46003120-46003139 | Msa1328320:CDS | 35.0% | |
| GGTTGTAGCATTAATGCAAA+AGG | + | chr8_4:46003156-46003175 | Msa1328320:CDS | 35.0% | |
| TTTCAGGCAACAATAGTAGT+AGG | + | chr8_4:46003307-46003326 | Msa1328320:intron | 35.0% | |
| ! | GTGAAAGCAAGAAGCATATT+TGG | + | chr8_4:46003587-46003606 | Msa1328320:CDS | 35.0% |
| ! | GGAAAGTGCAAATGTTACTA+AGG | - | chr8_4:46003630-46003649 | None:intergenic | 35.0% |
| AAAGTTGAGAAACATACTGC+GGG | - | chr8_4:46003671-46003690 | None:intergenic | 35.0% | |
| ! | CAATTTTGTCACTAGAGATG+TGG | + | chr8_4:46004039-46004058 | Msa1328320:intron | 35.0% |
| TTGTCACGCATCAATCAAAA+TGG | - | chr8_4:46004150-46004169 | None:intergenic | 35.0% | |
| !! | GATGGATTTGATTTGACTAG+TGG | + | chr8_4:46004206-46004225 | Msa1328320:intron | 35.0% |
| TGCCAAAAGTTTAGGAAGTT+AGG | + | chr8_4:46004378-46004397 | Msa1328320:intron | 35.0% | |
| GATACTAATTCCCAAGTTGT+TGG | + | chr8_4:46004640-46004659 | Msa1328320:CDS | 35.0% | |
| TAATTCCCAAGTTGTTGGAT+TGG | + | chr8_4:46004645-46004664 | Msa1328320:CDS | 35.0% | |
| ACCTTGATTCTTTATTGGAC+TGG | + | chr8_4:46004690-46004709 | Msa1328320:CDS | 35.0% | |
| TCCAGTCCAATAAAGAATCA+AGG | - | chr8_4:46004694-46004713 | None:intergenic | 35.0% | |
| ! | GCTTGGTTTCTTATTTCATC+AGG | - | chr8_4:46004731-46004750 | None:intergenic | 35.0% |
| AGTTAAATGCCTTGAAGGAA+GGG | + | chr8_4:46004751-46004770 | Msa1328320:CDS | 35.0% | |
| ! | TTGGAAGTGTACTTCGAATA+TGG | + | chr8_4:46004993-46005012 | Msa1328320:three_prime_UTR | 35.0% |
| ! | TCAACTCTGTTTTGTGGTAC+TGG | + | chr8_4:45999696-45999715 | Msa1328320:five_prime_UTR | 40.0% |
| AAGACTGAGAGAGTAGAAGA+AGG | - | chr8_4:45999790-45999809 | None:intergenic | 40.0% | |
| ! | CCTTTTGTCAGTTAACCATG+AGG | - | chr8_4:46000507-46000526 | None:intergenic | 40.0% |
| CCTCATGGTTAACTGACAAA+AGG | + | chr8_4:46000504-46000523 | Msa1328320:intron | 40.0% | |
| GGGAGCAAAGGAATGAAAAA+TGG | + | chr8_4:46000707-46000726 | Msa1328320:CDS | 40.0% | |
| ACATATGGAGGAAGATAAGG+CGG | - | chr8_4:46000960-46000979 | None:intergenic | 40.0% | |
| AGAGAGAGACTAACATATGG+AGG | - | chr8_4:46000972-46000991 | None:intergenic | 40.0% | |
| ACAGTGAGTTTGACGAAATC+AGG | + | chr8_4:46001027-46001046 | Msa1328320:intron | 40.0% | |
| AGCGTGCATGTTTGAATTGA+CGG | - | chr8_4:46001127-46001146 | None:intergenic | 40.0% | |
| !! | ATAAAATCACGGTGCCACTT+TGG | - | chr8_4:46001178-46001197 | None:intergenic | 40.0% |
| ATTTGGATTCGCGACGAATT+TGG | - | chr8_4:46001239-46001258 | None:intergenic | 40.0% | |
| TGTTGGAAGAAGAAGTGGTT+AGG | + | chr8_4:46001403-46001422 | Msa1328320:CDS | 40.0% | |
| !!! | CTCATGTGGTTTTGGTCAAT+AGG | - | chr8_4:46001519-46001538 | None:intergenic | 40.0% |
| ! | TGAGCTGATTCATGTTTGAG+TGG | - | chr8_4:46001849-46001868 | None:intergenic | 40.0% |
| !!! | TTTGTTTTGGTTGCCTTAGC+TGG | + | chr8_4:46002027-46002046 | Msa1328320:intron | 40.0% |
| GATAATCTCCATTCCAGCTA+AGG | - | chr8_4:46002043-46002062 | None:intergenic | 40.0% | |
| TGTGAGAATTGGTACATCCA+AGG | + | chr8_4:46002180-46002199 | Msa1328320:CDS | 40.0% | |
| !! | TGGACCAACTTCTCTTGTTT+TGG | - | chr8_4:46002311-46002330 | None:intergenic | 40.0% |
| TGTTCTGGTGAGATCAACAT+TGG | - | chr8_4:46002362-46002381 | None:intergenic | 40.0% | |
| CGATGACTTACTTCAATCTG+TGG | - | chr8_4:46002405-46002424 | None:intergenic | 40.0% | |
| TCTCTTTGCTAGTGTTTCAC+AGG | - | chr8_4:46002440-46002459 | None:intergenic | 40.0% | |
| AAGAAGCAAGTTTCCCAAGT+AGG | - | chr8_4:46002662-46002681 | None:intergenic | 40.0% | |
| CGGCATTGTAATTATAGGTG+TGG | - | chr8_4:46002788-46002807 | None:intergenic | 40.0% | |
| AGGACTTACAGTTCAATGTC+TGG | - | chr8_4:46002884-46002903 | None:intergenic | 40.0% | |
| !! | ACCGTTTTAAACTTCCGAAC+CGG | + | chr8_4:46002919-46002938 | Msa1328320:intron | 40.0% |
| !!! | ATAGTAGTTTTGTCCCGGTT+CGG | - | chr8_4:46002936-46002955 | None:intergenic | 40.0% |
| GTTCAATCGGTTGAACCATT+TGG | + | chr8_4:46002999-46003018 | Msa1328320:intron | 40.0% | |
| ATCGGTTGAACCATTTGGTT+CGG | + | chr8_4:46003004-46003023 | Msa1328320:intron | 40.0% | |
| TGGCAAGCTAAGATTTCATC+CGG | - | chr8_4:46003042-46003061 | None:intergenic | 40.0% | |
| CTTCTGACAATGCATGTTTC+AGG | + | chr8_4:46003291-46003310 | Msa1328320:intron | 40.0% | |
| ! | CTTTTGGACATGTCTGTTGA+TGG | - | chr8_4:46003550-46003569 | None:intergenic | 40.0% |
| ! | AGCAAGAAGCATATTTGGAC+TGG | + | chr8_4:46003592-46003611 | Msa1328320:CDS | 40.0% |
| ! | GAAGCATATTTGGACTGGAA+TGG | + | chr8_4:46003597-46003616 | Msa1328320:CDS | 40.0% |
| GTAACATTTGCACTTTCCTG+TGG | + | chr8_4:46003632-46003651 | Msa1328320:CDS | 40.0% | |
| TAATTTCGTCCATTGAGACG+TGG | - | chr8_4:46003921-46003940 | None:intergenic | 40.0% | |
| ! | CCTAAACTTTTGGCAGAGTT+TGG | - | chr8_4:46004373-46004392 | None:intergenic | 40.0% |
| CCAAACTCTGCCAAAAGTTT+AGG | + | chr8_4:46004370-46004389 | Msa1328320:intron | 40.0% | |
| ! | CTTCAAGGCATTTAACTGCT+TGG | - | chr8_4:46004748-46004767 | None:intergenic | 40.0% |
| CAAGCAGTTAAATGCCTTGA+AGG | + | chr8_4:46004746-46004765 | Msa1328320:CDS | 40.0% | |
| CAGTTAAATGCCTTGAAGGA+AGG | + | chr8_4:46004750-46004769 | Msa1328320:CDS | 40.0% | |
| !!! | CTCTGTTTTGTGGTACTGGT+AGG | + | chr8_4:45999700-45999719 | Msa1328320:five_prime_UTR | 45.0% |
| GAGGAAAAAGACGAGGTTGT+TGG | - | chr8_4:45999768-45999787 | None:intergenic | 45.0% | |
| GAAGAAGGAGGAAAAAGACG+AGG | - | chr8_4:45999775-45999794 | None:intergenic | 45.0% | |
| ACTGAGAGAGTAGAAGAAGG+AGG | - | chr8_4:45999787-45999806 | None:intergenic | 45.0% | |
| ATGTGGAAAGCAGGAGAAGA+TGG | + | chr8_4:46000676-46000695 | Msa1328320:intron | 45.0% | |
| ! | GACATTGGAACTTCTAGCTG+AGG | + | chr8_4:46001374-46001393 | Msa1328320:intron | 45.0% |
| ! | ATTGGAACTTCTAGCTGAGG+TGG | + | chr8_4:46001377-46001396 | Msa1328320:CDS | 45.0% |
| CTTCTGGCAAGAGAATTCTG+TGG | - | chr8_4:46001615-46001634 | None:intergenic | 45.0% | |
| !! | CTTTCTGCTAGAAGCACTTC+TGG | - | chr8_4:46001631-46001650 | None:intergenic | 45.0% |
| TGAATCAGCTCAGAAGTCCA+TGG | + | chr8_4:46001857-46001876 | Msa1328320:CDS | 45.0% | |
| TTTGGTTGCCTTAGCTGGAA+TGG | + | chr8_4:46002032-46002051 | Msa1328320:intron | 45.0% | |
| CAATGCCGGACTAAAGAGTT+TGG | + | chr8_4:46002800-46002819 | Msa1328320:intron | 45.0% | |
| !! | CCCGGTTCGGAAGTTTAAAA+CGG | - | chr8_4:46002923-46002942 | None:intergenic | 45.0% |
| !! | CCGTTTTAAACTTCCGAACC+GGG | + | chr8_4:46002920-46002939 | Msa1328320:intron | 45.0% |
| ACAACCATTTCCGGACTTTC+CGG | - | chr8_4:46003142-46003161 | None:intergenic | 45.0% | |
| CAGGCAACAATAGTAGTAGG+AGG | + | chr8_4:46003310-46003329 | Msa1328320:intron | 45.0% | |
| TTGCACTTTCCTGTGGAAGT+TGG | + | chr8_4:46003639-46003658 | Msa1328320:CDS | 45.0% | |
| ACTCACTTTCCCTTCCTTCA+AGG | - | chr8_4:46004763-46004782 | None:intergenic | 45.0% | |
| !! | CATATTTATTAATATTATTA+AGG | - | chr8_4:45999873-45999892 | None:intergenic | 5.0% |
| GGAAAGCAGGAGAAGATGGA+AGG | + | chr8_4:46000680-46000699 | Msa1328320:intron | 50.0% | |
| AAGCAGGAGAAGATGGAAGG+AGG | + | chr8_4:46000683-46000702 | Msa1328320:intron | 50.0% | |
| AGGAGAAGATGGAAGGAGGA+GGG | + | chr8_4:46000687-46000706 | Msa1328320:intron | 50.0% | |
| AGACGAGGCAAAGATCCCAA+AGG | - | chr8_4:46000936-46000955 | None:intergenic | 50.0% | |
| ! | GGCAGTGTTGGAAGAAGAAG+TGG | + | chr8_4:46001398-46001417 | Msa1328320:CDS | 50.0% |
| CTGGCAAGAGAATTCTGTGG+TGG | - | chr8_4:46001612-46001631 | None:intergenic | 50.0% | |
| CACTGGACACGCCTAATCTA+AGG | + | chr8_4:46001924-46001943 | Msa1328320:intron | 50.0% | |
| GCACGGACACTCCTTAGATT+AGG | - | chr8_4:46001938-46001957 | None:intergenic | 50.0% | |
| TGACACTGACACGCAGACAT+CGG | + | chr8_4:46002478-46002497 | Msa1328320:intron | 50.0% | |
| ! | ATAACCAGACGTGTCGGTGT+TGG | + | chr8_4:46002531-46002550 | Msa1328320:intron | 50.0% |
| ACATGGCATACCGGAAAGTC+CGG | + | chr8_4:46003129-46003148 | Msa1328320:CDS | 50.0% | |
| CATACCGGAAAGTCCGGAAA+TGG | + | chr8_4:46003135-46003154 | Msa1328320:CDS | 50.0% | |
| ATTGAGACGTGGCAGTGATG+TGG | - | chr8_4:46003910-46003929 | None:intergenic | 50.0% | |
| ACATCACTGCCACGTCTCAA+TGG | + | chr8_4:46003909-46003928 | Msa1328320:intron | 50.0% | |
| ! | CTAGAGATGTGGTAGCGATG+TGG | + | chr8_4:46004050-46004069 | Msa1328320:intron | 50.0% |
| CAGGAGAAGATGGAAGGAGG+AGG | + | chr8_4:46000686-46000705 | Msa1328320:intron | 55.0% | |
| ATGGAAGGAGGAGGGAGCAA+AGG | + | chr8_4:46000695-46000714 | Msa1328320:CDS | 55.0% | |
| GGAAGATAAGGCGGAAGACG+AGG | - | chr8_4:46000951-46000970 | None:intergenic | 55.0% | |
| TCTAGCTGAGGTGGCAGTGT+TGG | + | chr8_4:46001386-46001405 | Msa1328320:CDS | 55.0% | |
| TTATGTGTCGGGGTCGACAC+TGG | + | chr8_4:46001907-46001926 | Msa1328320:intron | 55.0% | |
| GGGTGAAGACCAACTTCCAC+AGG | - | chr8_4:46003651-46003670 | None:intergenic | 55.0% | |
| GCAGTGATGTGGAGTTCACG+TGG | - | chr8_4:46003899-46003918 | None:intergenic | 55.0% | |
| GTAGCGATGTGGAGTCTGCA+CGG | + | chr8_4:46004061-46004080 | Msa1328320:intron | 55.0% | |
| GTGTCCAACACCGACACGTC+TGG | - | chr8_4:46002538-46002557 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 45999695 | 46005082 | 45999695 | ID=Msa1328320;Name=Msa1328320 |
| chr8_4 | mRNA | 45999695 | 46005082 | 45999695 | ID=Msa1328320-mRNA-1;Parent=Msa1328320;Name=Msa1328320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=244|1|1|1|0.8|0.81|11|277|583 |
| chr8_4 | exon | 45999695 | 45999891 | 45999695 | ID=Msa1328320-mRNA-1:exon:13016;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46000138 | 46000223 | 46000138 | ID=Msa1328320-mRNA-1:exon:13017;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46000689 | 46000772 | 46000689 | ID=Msa1328320-mRNA-1:exon:13018;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46000861 | 46000977 | 46000861 | ID=Msa1328320-mRNA-1:exon:13019;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46001375 | 46001896 | 46001375 | ID=Msa1328320-mRNA-1:exon:13020;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46002046 | 46002413 | 46002046 | ID=Msa1328320-mRNA-1:exon:13021;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46002656 | 46002755 | 46002656 | ID=Msa1328320-mRNA-1:exon:13022;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46003118 | 46003177 | 46003118 | ID=Msa1328320-mRNA-1:exon:13023;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46003313 | 46003396 | 46003313 | ID=Msa1328320-mRNA-1:exon:13024;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46003557 | 46003673 | 46003557 | ID=Msa1328320-mRNA-1:exon:13025;Parent=Msa1328320-mRNA-1 |
| chr8_4 | exon | 46004545 | 46005082 | 46004545 | ID=Msa1328320-mRNA-1:exon:13026;Parent=Msa1328320-mRNA-1 |
| chr8_4 | five_prime_UTR | 45999695 | 45999891 | 45999695 | ID=Msa1328320-mRNA-1:five_prime_utr;Parent=Msa1328320-mRNA-1 |
| chr8_4 | five_prime_UTR | 46000138 | 46000184 | 46000138 | ID=Msa1328320-mRNA-1:five_prime_utr;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46000185 | 46000223 | 46000185 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46000689 | 46000772 | 46000689 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46000861 | 46000977 | 46000861 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46001375 | 46001896 | 46001375 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46002046 | 46002413 | 46002046 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46002656 | 46002755 | 46002656 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46003118 | 46003177 | 46003118 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46003313 | 46003396 | 46003313 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46003557 | 46003673 | 46003557 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | CDS | 46004545 | 46004805 | 46004545 | ID=Msa1328320-mRNA-1:cds;Parent=Msa1328320-mRNA-1 |
| chr8_4 | three_prime_UTR | 46004806 | 46005082 | 46004806 | ID=Msa1328320-mRNA-1:three_prime_utr;Parent=Msa1328320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
