AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1205550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205550 MtrunA17_Chr4g0054791 96.226 318 12 0 6 323 1 318 0.0 639
Msa1205550 MtrunA17_Chr5g0400461 61.449 345 96 9 6 323 1 335 2.24e-135 387
Msa1205550 MtrunA17_Chr6g0481091 64.516 155 52 1 11 165 6 157 3.97e-68 213
Msa1205550 MtrunA17_Chr5g0433781 61.688 154 56 1 11 164 6 156 7.14e-62 207
Msa1205550 MtrunA17_Chr2g0309891 59.375 160 61 2 6 164 1 157 1.60e-61 199
Msa1205550 MtrunA17_Chr3g0109821 52.660 188 74 4 11 196 6 180 6.88e-61 206
Msa1205550 MtrunA17_Chr5g0405211 45.000 200 98 5 11 209 8 196 3.61e-52 175
Msa1205550 MtrunA17_Chr1g0201021 55.921 152 64 1 13 164 21 169 1.55e-51 179
Msa1205550 MtrunA17_Chr1g0200561 50.307 163 75 3 9 170 17 174 5.26e-51 172
Msa1205550 MtrunA17_Chr8g0372121 49.068 161 76 3 6 165 1 156 1.29e-49 167
Msa1205550 MtrunA17_Chr5g0428991 55.346 159 66 3 11 168 25 179 2.28e-49 174
Msa1205550 MtrunA17_Chr4g0018391 49.123 171 76 4 11 180 7 167 3.30e-49 167
Msa1205550 MtrunA17_Chr4g0056541 51.613 155 69 3 11 164 7 156 3.74e-49 167
Msa1205550 MtrunA17_Chr3g0128111 51.250 160 73 3 14 172 45 200 5.91e-49 164
Msa1205550 MtrunA17_Chr3g0128151 53.374 163 71 3 11 172 22 180 6.18e-49 172
Msa1205550 MtrunA17_Chr5g0398971 43.367 196 94 5 11 201 7 190 2.30e-48 165
Msa1205550 MtrunA17_Chr8g0384721 40.336 238 121 7 6 233 1 227 3.52e-48 163
Msa1205550 MtrunA17_Chr7g0252971 45.304 181 83 4 11 181 8 182 7.58e-48 164
Msa1205550 MtrunA17_Chr2g0309331 48.214 168 79 4 6 169 2 165 1.77e-47 163
Msa1205550 MtrunA17_Chr4g0060931 47.619 168 81 3 11 176 17 179 2.11e-47 163
Msa1205550 MtrunA17_Chr4g0017921 51.613 155 68 3 11 164 8 156 2.56e-47 162
Msa1205550 MtrunA17_Chr4g0076731 51.266 158 71 3 7 164 50 201 2.64e-47 164
Msa1205550 MtrunA17_Chr3g0130101 47.561 164 83 1 7 170 3 163 3.46e-47 162
Msa1205550 MtrunA17_Chr2g0318081 45.763 177 91 2 11 187 16 187 3.70e-47 162
Msa1205550 MtrunA17_Chr3g0091921 47.929 169 81 3 10 176 15 178 3.81e-47 160
Msa1205550 MtrunA17_Chr2g0326361 46.067 178 87 4 11 183 14 187 7.02e-47 160
Msa1205550 MtrunA17_Chr2g0318101 47.879 165 72 4 11 164 15 176 7.69e-47 161
Msa1205550 MtrunA17_Chr3g0130731 48.276 174 80 4 6 175 1 168 1.85e-46 159
Msa1205550 MtrunA17_Chr8g0364791 47.500 160 81 1 11 170 6 162 5.70e-46 161
Msa1205550 MtrunA17_Chr4g0047841 53.191 141 63 2 11 151 15 152 8.84e-46 158
Msa1205550 MtrunA17_Chr4g0042561 48.795 166 74 4 11 171 9 168 1.09e-45 156
Msa1205550 MtrunA17_Chr7g0214071 50.000 154 69 3 11 164 15 160 1.86e-45 155
Msa1205550 MtrunA17_Chr8g0346001 42.857 189 91 4 11 187 15 198 4.27e-45 159
Msa1205550 MtrunA17_Chr6g0484441 43.678 174 85 4 11 181 5 168 5.02e-45 156
Msa1205550 MtrunA17_Chr5g0417791 48.521 169 76 4 11 174 3 165 5.90e-45 154
Msa1205550 MtrunA17_Chr5g0417001 40.991 222 116 6 10 219 13 231 6.06e-45 157
Msa1205550 MtrunA17_Chr8g0359921 50.920 163 71 4 11 170 14 170 7.60e-45 155
Msa1205550 MtrunA17_Chr2g0316971 55.639 133 56 2 9 141 21 150 8.02e-45 157
Msa1205550 MtrunA17_Chr7g0263931 39.111 225 126 5 11 228 11 231 1.04e-44 155
Msa1205550 MtrunA17_Chr3g0124761 45.977 174 85 3 11 181 7 174 1.09e-44 154
Msa1205550 MtrunA17_Chr1g0197361 52.288 153 68 4 13 164 10 158 1.16e-44 160
Msa1205550 MtrunA17_Chr8g0361731 45.506 178 84 5 6 174 10 183 2.05e-44 156
Msa1205550 MtrunA17_Chr6g0453451 47.853 163 78 3 11 171 20 177 3.27e-44 154
Msa1205550 MtrunA17_Chr1g0147421 45.977 174 88 4 11 183 27 195 7.12e-44 154
Msa1205550 MtrunA17_Chr1g0197351 51.553 161 69 2 11 165 42 199 9.06e-44 156
Msa1205550 MtrunA17_Chr6g0453131 47.853 163 72 3 11 164 15 173 1.02e-43 154
Msa1205550 MtrunA17_Chr3g0139331 40.845 213 119 4 11 221 11 218 1.14e-43 153
Msa1205550 MtrunA17_Chr3g0092671 50.968 155 69 5 13 165 7 156 1.50e-43 157
Msa1205550 MtrunA17_Chr6g0461661 50.735 136 64 2 11 146 18 150 2.68e-43 152
Msa1205550 MtrunA17_Chr8g0384201 45.000 160 85 1 11 170 6 162 7.05e-43 154
Msa1205550 MtrunA17_Chr7g0253011 44.643 168 88 3 11 175 17 182 3.96e-42 150
Msa1205550 MtrunA17_Chr1g0183741 38.596 228 111 6 8 217 7 223 4.19e-41 144
Msa1205550 MtrunA17_Chr4g0038751 48.684 152 71 3 13 164 17 161 6.69e-41 144
Msa1205550 MtrunA17_Chr7g0217711 49.630 135 63 2 7 141 15 144 1.23e-40 140
Msa1205550 MtrunA17_Chr3g0144271 55.303 132 55 3 11 141 23 151 1.75e-40 146
Msa1205550 MtrunA17_Chr2g0311661 36.864 236 120 8 13 226 23 251 1.80e-40 143
Msa1205550 MtrunA17_Chr5g0442771 37.559 213 110 4 7 205 14 217 6.74e-40 142
Msa1205550 MtrunA17_Chr2g0311651 39.234 209 104 6 13 199 24 231 1.02e-39 142
Msa1205550 MtrunA17_Chr7g0217721 49.630 135 63 2 7 141 15 144 1.78e-39 142
Msa1205550 MtrunA17_Chr7g0261411 48.077 156 70 4 8 161 7 153 2.32e-39 140
Msa1205550 MtrunA17_Chr2g0312321 47.093 172 76 6 5 173 5 164 4.08e-39 140
Msa1205550 MtrunA17_Chr8g0345671 52.672 131 59 3 11 140 11 139 1.54e-37 138
Msa1205550 MtrunA17_Chr2g0321741 43.017 179 83 6 31 204 12 176 2.06e-37 137
Msa1205550 MtrunA17_Chr8g0345711 45.395 152 77 4 1 148 2 151 2.44e-36 129
Msa1205550 MtrunA17_Chr8g0385991 43.750 176 82 5 11 177 14 181 8.37e-36 129
Msa1205550 MtrunA17_Chr8g0345691 45.752 153 75 5 11 162 12 157 3.93e-34 129
Msa1205550 MtrunA17_Chr3g0131911 44.720 161 78 4 11 164 14 170 3.18e-33 122
Msa1205550 MtrunA17_Chr2g0321631 42.767 159 78 6 12 161 5 159 5.70e-33 122
Msa1205550 MtrunA17_Chr4g0026141 41.772 158 84 5 10 161 4 159 6.03e-33 122
Msa1205550 MtrunA17_Chr8g0345731 42.405 158 80 4 10 164 23 172 8.76e-33 119
Msa1205550 MtrunA17_Chr7g0266701 34.746 236 115 10 11 210 4 236 5.48e-32 120
Msa1205550 MtrunA17_Chr4g0050701 46.565 131 59 3 11 141 11 130 1.18e-31 117
Msa1205550 MtrunA17_Chr3g0113001 49.074 108 49 3 66 170 18 122 7.05e-28 110
Msa1205550 MtrunA17_Chr8g0345721 39.412 170 70 5 14 152 38 205 7.66e-26 102
Msa1205550 MtrunA17_Chr8g0345701 40.690 145 67 5 11 140 7 147 5.18e-24 96.7
Msa1205550 MtrunA17_Chr8g0345741 42.500 120 66 3 22 140 2 119 6.31e-24 95.9
Msa1205550 MtrunA17_Chr3g0113031 48.454 97 43 3 78 170 5 98 9.06e-21 90.1
Msa1205550 MtrunA17_Chr7g0243371 46.914 81 42 1 61 141 12 91 1.84e-19 82.4
Msa1205550 MtrunA17_Chr8g0384351 33.889 180 94 7 11 190 10 164 2.78e-17 78.6
Msa1205550 MtrunA17_Chr3g0130321 31.818 132 79 3 11 141 7 128 3.34e-13 67.8
Msa1205550 MtrunA17_Chr7g0251651 26.943 193 119 5 7 194 14 189 1.65e-12 65.5
Msa1205550 MtrunA17_Chr1g0194791 61.702 47 17 1 13 58 48 94 2.46e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1205550 AT4G17980.2 54.667 300 121 7 6 301 1 289 7.61e-100 296
Msa1205550 AT4G17980.1 61.382 246 83 4 6 247 1 238 2.78e-98 291
Msa1205550 AT5G46590.1 52.349 298 131 5 6 301 1 289 3.03e-96 286
Msa1205550 AT5G46590.2 50.168 297 128 5 6 301 1 278 1.79e-90 271
Msa1205550 AT1G32510.1 60.086 233 73 5 6 232 1 219 7.38e-84 255
Msa1205550 AT3G17730.1 56.983 179 68 2 11 183 6 181 1.86e-66 209
Msa1205550 AT1G54330.1 65.806 155 47 2 11 165 6 154 1.72e-64 206
Msa1205550 AT1G65910.1 60.248 161 61 1 11 171 6 163 2.24e-63 212
Msa1205550 AT3G03200.1 60.625 160 59 2 6 164 1 157 1.71e-62 206
Msa1205550 AT5G17260.1 59.375 160 61 2 6 164 1 157 2.78e-62 205
Msa1205550 AT5G22290.1 51.852 162 68 4 5 166 15 166 4.51e-52 175
Msa1205550 AT3G10500.1 53.548 155 69 1 11 165 9 160 1.39e-51 179
Msa1205550 AT1G12260.2 47.000 200 91 6 11 205 7 196 5.16e-51 172
Msa1205550 AT1G71930.2 40.090 222 122 4 5 220 3 219 6.19e-51 172
Msa1205550 AT1G71930.1 40.090 222 122 4 5 220 3 219 6.19e-51 172
Msa1205550 AT2G18060.3 47.458 177 81 4 6 181 4 169 1.03e-50 172
Msa1205550 AT2G18060.1 47.458 177 81 4 6 181 4 169 1.03e-50 172
Msa1205550 AT1G12260.1 47.000 200 91 6 11 205 7 196 1.41e-50 172
Msa1205550 AT3G44290.2 51.948 154 63 4 13 166 16 158 1.44e-50 167
Msa1205550 AT5G04410.1 54.194 155 68 1 11 165 9 160 1.48e-50 176
Msa1205550 AT3G49530.2 52.866 157 70 3 11 166 13 166 2.62e-50 172
Msa1205550 AT3G10490.1 53.846 156 68 2 11 165 27 179 2.77e-50 167
Msa1205550 AT1G33060.2 52.439 164 75 1 1 164 14 174 3.08e-50 177
Msa1205550 AT1G33060.1 52.439 164 75 1 1 164 14 174 3.12e-50 177
Msa1205550 AT4G35580.1 56.774 155 62 3 11 164 9 159 4.40e-50 174
Msa1205550 AT4G35580.2 56.774 155 62 3 11 164 9 159 4.54e-50 174
Msa1205550 AT4G36160.1 52.258 155 68 3 11 164 10 159 4.60e-50 171
Msa1205550 AT4G36160.3 52.258 155 68 3 11 164 10 159 4.60e-50 171
Msa1205550 AT4G35580.3 56.774 155 62 3 11 164 9 159 4.61e-50 174
Msa1205550 AT4G36160.2 52.258 155 68 3 11 164 14 163 4.89e-50 171
Msa1205550 AT3G49530.1 52.866 157 70 3 11 166 13 166 7.82e-50 172
Msa1205550 AT5G07680.2 49.405 168 78 3 11 176 3 165 1.01e-49 168
Msa1205550 AT5G07680.1 49.405 168 78 3 11 176 17 179 1.11e-49 168
Msa1205550 AT3G44290.1 51.948 154 63 4 13 166 16 158 2.45e-49 168
Msa1205550 AT1G62700.1 52.258 155 68 3 11 164 7 156 4.70e-49 169
Msa1205550 AT1G62700.2 52.258 155 68 3 11 164 7 156 4.70e-49 169
Msa1205550 AT3G10480.2 53.548 155 69 1 11 165 27 178 6.03e-49 169
Msa1205550 AT5G66300.1 51.282 156 71 3 11 165 12 163 6.86e-49 165
Msa1205550 AT3G10480.1 53.205 156 69 2 11 165 27 179 8.34e-49 169
Msa1205550 AT3G10490.2 53.846 156 68 2 11 165 27 179 1.05e-48 169
Msa1205550 AT2G02450.2 50.968 155 70 3 10 164 50 198 2.96e-48 167
Msa1205550 AT2G02450.1 50.968 155 70 3 10 164 50 198 3.09e-48 166
Msa1205550 AT5G61430.1 46.893 177 87 3 2 176 7 178 3.89e-48 164
Msa1205550 AT4G27410.2 49.102 167 80 2 11 177 14 175 5.06e-48 163
Msa1205550 AT5G24590.2 51.899 158 74 1 9 166 11 166 8.23e-48 167
Msa1205550 AT5G09330.5 46.667 165 85 1 6 170 1 162 1.23e-47 167
Msa1205550 AT5G09330.2 46.667 165 85 1 6 170 1 162 1.23e-47 167
Msa1205550 AT5G09330.4 46.667 165 85 1 6 170 1 162 1.23e-47 167
Msa1205550 AT5G09330.3 46.667 165 85 1 6 170 1 162 1.23e-47 167
Msa1205550 AT5G09330.1 46.667 165 85 1 6 170 1 162 1.23e-47 167
Msa1205550 AT2G24430.2 48.214 168 83 3 3 170 8 171 3.00e-47 162
Msa1205550 AT2G24430.1 48.214 168 83 3 3 170 8 171 3.00e-47 162
Msa1205550 AT5G62380.2 46.111 180 86 4 9 187 5 174 5.25e-47 162
Msa1205550 AT5G62380.1 46.111 180 86 4 9 187 5 174 5.25e-47 162
Msa1205550 AT4G10350.1 50.292 171 77 5 11 177 9 175 5.98e-47 162
Msa1205550 AT5G64060.1 46.250 160 83 1 11 170 6 162 6.41e-47 162
Msa1205550 AT1G32770.1 38.132 257 130 9 11 254 16 256 1.31e-46 161
Msa1205550 AT1G79580.3 52.903 155 67 3 11 164 17 166 2.44e-46 161
Msa1205550 AT1G79580.5 52.903 155 67 3 11 164 17 166 2.44e-46 161
Msa1205550 AT1G79580.4 52.903 155 67 3 11 164 17 166 2.44e-46 161
Msa1205550 AT1G79580.2 52.903 155 67 3 11 164 17 166 2.44e-46 161
Msa1205550 AT1G79580.1 52.903 155 67 3 11 164 17 166 2.44e-46 161
Msa1205550 AT5G39610.1 47.674 172 77 4 11 177 20 183 2.62e-46 158
Msa1205550 AT3G61910.1 42.929 198 92 5 11 192 11 203 2.72e-46 160
Msa1205550 AT2G27300.1 50.327 153 65 4 11 163 14 155 3.45e-46 159
Msa1205550 AT1G52890.1 45.506 178 90 3 11 188 14 184 3.69e-46 159
Msa1205550 AT3G18400.1 47.826 161 78 3 11 171 5 159 4.19e-46 159
Msa1205550 AT3G15500.1 46.988 166 83 2 11 176 14 174 4.57e-46 159
Msa1205550 AT1G61110.1 48.538 171 72 5 11 169 16 182 5.19e-46 159
Msa1205550 AT3G15170.1 43.519 216 105 5 9 219 18 221 5.62e-46 158
Msa1205550 AT5G08790.1 40.336 238 123 6 11 242 7 231 1.88e-45 156
Msa1205550 AT1G33280.1 49.677 155 71 4 11 164 8 156 2.77e-45 156
Msa1205550 AT3G04070.2 48.503 167 75 4 11 168 10 174 2.84e-45 157
Msa1205550 AT1G69490.1 49.390 164 72 4 11 169 9 166 3.00e-45 155
Msa1205550 AT4G27410.3 46.154 182 80 3 11 177 14 192 3.54e-45 156
Msa1205550 AT2G33480.2 51.948 154 64 3 11 164 15 158 3.83e-45 155
Msa1205550 AT2G33480.1 52.903 155 63 4 11 164 15 160 5.62e-45 154
Msa1205550 AT3G29035.1 54.348 138 58 2 11 148 24 156 7.95e-45 155
Msa1205550 AT2G46770.1 43.523 193 77 6 11 182 16 197 1.10e-44 156
Msa1205550 AT3G04070.1 52.899 138 61 2 11 146 10 145 4.36e-44 155
Msa1205550 AT1G34190.1 54.745 137 59 1 8 144 13 146 5.02e-44 159
Msa1205550 AT3G10480.3 44.974 189 67 3 11 165 27 212 5.87e-44 158
Msa1205550 AT1G01720.1 48.485 165 73 4 11 170 7 164 9.49e-44 152
Msa1205550 AT3G04060.1 46.386 166 83 3 11 174 20 181 1.68e-43 152
Msa1205550 AT1G76420.1 48.765 162 79 3 11 172 22 179 1.70e-43 152
Msa1205550 AT2G43000.1 48.366 153 73 3 13 164 20 167 2.47e-43 150
Msa1205550 AT5G63790.1 43.979 191 94 4 11 196 50 232 8.33e-43 150
Msa1205550 AT1G26870.1 41.296 247 119 9 6 230 12 254 8.98e-43 152
Msa1205550 AT5G63790.2 43.979 191 94 4 11 196 60 242 1.01e-42 150
Msa1205550 AT1G34180.3 49.682 157 76 1 8 164 13 166 1.05e-42 153
Msa1205550 AT3G15510.1 45.238 168 78 4 15 171 21 185 1.60e-42 150
Msa1205550 AT5G53950.1 52.941 136 61 2 11 146 17 149 2.98e-42 150
Msa1205550 AT1G34180.1 49.682 157 76 1 8 164 13 166 5.91e-42 153
Msa1205550 AT5G39820.1 37.991 229 113 5 10 217 19 239 8.02e-42 148
Msa1205550 AT5G18270.2 46.951 164 73 4 11 168 21 176 1.07e-41 148
Msa1205550 AT5G18270.1 46.341 164 74 4 11 168 21 176 1.65e-41 147
Msa1205550 AT2G17040.1 44.737 152 77 2 13 164 8 152 5.39e-41 144
Msa1205550 AT5G13180.1 54.198 131 54 2 11 141 14 138 1.41e-40 142
Msa1205550 AT1G52880.1 48.125 160 72 4 15 165 21 178 1.61e-40 144
Msa1205550 AT1G32870.1 55.714 140 57 2 2 141 1 135 2.55e-40 148
Msa1205550 AT1G32870.2 55.714 140 57 2 2 141 1 135 2.67e-40 148
Msa1205550 AT1G77450.1 40.796 201 103 5 11 205 10 200 2.76e-40 142
Msa1205550 AT1G32870.3 55.319 141 58 2 1 141 36 171 5.22e-40 147
Msa1205550 AT3G12977.1 38.559 236 125 7 6 229 13 240 8.11e-40 141
Msa1205550 AT1G34180.4 46.154 169 76 2 8 164 13 178 1.40e-39 145
Msa1205550 AT1G34180.2 46.154 169 76 2 8 164 13 178 8.08e-39 144
Msa1205550 AT3G12910.1 38.182 220 104 6 7 198 17 232 8.80e-38 137
Msa1205550 AT1G56010.2 45.509 167 78 5 5 165 13 172 1.11e-37 137
Msa1205550 AT5G04395.1 46.154 143 66 1 11 142 28 170 3.92e-37 131
Msa1205550 AT4G28530.1 43.333 180 73 6 8 168 7 176 1.85e-35 132
Msa1205550 AT5G22380.1 36.000 200 107 6 14 194 8 205 1.92e-30 115
Msa1205550 AT5G61430.2 48.673 113 53 2 66 176 6 115 9.75e-30 114
Msa1205550 AT3G44350.2 33.645 214 124 8 8 206 2 212 2.14e-27 107
Msa1205550 AT4G01550.1 38.636 176 101 4 14 188 7 176 5.71e-27 110
Msa1205550 AT5G64530.2 43.609 133 60 4 11 143 3 120 1.61e-26 103
Msa1205550 AT1G02230.1 34.503 171 101 5 12 180 4 165 2.32e-26 107
Msa1205550 AT5G64530.1 43.609 133 60 4 11 143 3 120 3.36e-26 103
Msa1205550 AT4G10350.2 51.754 114 48 4 67 177 19 128 6.86e-26 105
Msa1205550 AT3G12977.2 50.505 99 45 2 68 165 20 115 7.10e-25 100
Msa1205550 AT4G28530.2 45.614 114 42 3 8 104 7 117 2.63e-24 101
Msa1205550 AT1G02250.1 37.126 167 95 5 12 175 4 163 2.79e-24 101
Msa1205550 AT4G01520.1 34.375 160 98 3 12 169 5 159 2.94e-24 100
Msa1205550 AT3G44350.1 37.324 142 84 4 8 146 2 141 3.40e-23 94.4
Msa1205550 AT2G33480.3 50.000 100 45 3 66 164 8 103 4.55e-23 95.5
Msa1205550 AT1G56010.1 50.485 103 41 3 68 165 8 105 4.77e-23 96.3
Msa1205550 AT4G01540.4 33.735 166 100 4 6 169 2 159 7.46e-23 98.2
Msa1205550 AT4G01540.2 25.828 302 188 9 6 302 2 272 1.01e-22 98.2
Msa1205550 AT4G01540.3 33.735 166 100 4 6 169 2 159 1.65e-22 97.4
Msa1205550 AT4G01540.1 25.828 302 188 9 6 302 2 272 1.98e-22 97.8
Msa1205550 AT3G04420.2 38.462 130 75 3 12 139 4 130 3.33e-22 94.7
Msa1205550 AT3G04420.1 38.462 130 75 3 12 139 4 130 6.39e-22 95.1
Msa1205550 AT1G01010.1 30.348 201 120 8 14 202 6 198 4.69e-19 87.8
Msa1205550 AT1G02220.1 33.835 133 74 4 12 139 4 127 7.27e-17 80.9
Msa1205550 AT3G55210.1 33.793 145 79 4 10 141 10 150 3.35e-16 77.8
Msa1205550 AT3G56530.1 32.026 153 96 4 11 161 52 198 3.64e-16 78.2
Msa1205550 AT3G10490.4 49.383 81 37 2 86 165 2 79 4.31e-16 78.6
Msa1205550 AT3G10490.3 49.383 81 37 2 86 165 2 79 4.31e-16 78.6
Msa1205550 AT5G50820.1 31.847 157 93 5 11 163 17 163 2.85e-15 73.6
Msa1205550 AT5G14000.2 32.117 137 84 3 8 142 12 141 3.87e-15 72.4
Msa1205550 AT5G14000.1 27.895 190 125 4 8 195 12 191 8.91e-15 72.4
Msa1205550 AT2G43000.2 40.659 91 50 2 75 164 2 89 1.77e-13 68.6
Msa1205550 AT2G18060.2 44.595 74 36 2 91 164 2 70 2.15e-13 69.7
Msa1205550 AT5G22290.2 46.667 75 31 3 92 166 2 67 6.53e-13 67.8

Find 67 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATGGACTATAATGGAAAT+TGG 0.146738 8_1:+61897765 Msa1205550:CDS
CTATTTGTTCTTGATCCATT+TGG 0.249925 8_1:-61896756 None:intergenic
TCAGATAATGTAAGTCAAAA+TGG 0.276555 8_1:+61897707 Msa1205550:CDS
AAACCAATCCTTCAAACTTC+TGG 0.291118 8_1:+61897409 Msa1205550:CDS
TATTTGTTCTTGATCCATTT+GGG 0.300747 8_1:-61896755 None:intergenic
GAAGAATCAAGAATCATATC+AGG 0.310654 8_1:-61897438 None:intergenic
GGGAATTTCATGGACTATAA+TGG 0.316926 8_1:+61897758 Msa1205550:CDS
TGAGGTCTCACTTCCATTGA+TGG 0.347267 8_1:-61897289 None:intergenic
ATTATATGTACCTTAAAATA+TGG 0.351863 8_1:-61896966 None:intergenic
CAAGCAAGTCACCTGAATAA+TGG 0.364530 8_1:+61897339 Msa1205550:CDS
ATTTGATTATAAACCTCATA+AGG 0.374916 8_1:-61897794 None:intergenic
GGCTTTCCAGTAGCCAGCTT+TGG 0.387525 8_1:-61896784 None:intergenic
GATCCAGAAGTTTGAAGGAT+TGG 0.396961 8_1:-61897412 None:intergenic
AAGTTCTCAAGGGAATTTCA+TGG 0.401113 8_1:+61897748 Msa1205550:CDS
AACCATTCTGAATCTCGTTT+CGG 0.411065 8_1:-61896705 None:intergenic
CTTTAGGCGATAGAACTAAC+TGG 0.414854 8_1:+61896898 Msa1205550:CDS
CATGGACTATAATGGAAATT+GGG 0.418240 8_1:+61897766 Msa1205550:CDS
TATCTTGGAAGGGCTCCTTT+AGG 0.429258 8_1:+61896882 Msa1205550:CDS
AAATTGGGATGTTCCTTATG+AGG 0.431601 8_1:+61897781 Msa1205550:CDS
TGAATCACCAAGGCAATCAT+TGG 0.432172 8_1:+61897625 Msa1205550:CDS
GAGCTACCAAAGCTGGCTAC+TGG 0.434106 8_1:+61896778 Msa1205550:CDS
ACATGGTTAAACTCGGCAAT+TGG 0.434194 8_1:-61897378 None:intergenic
TTTGCAGTTGCCTGTGATAG+TGG 0.456084 8_1:-61896847 None:intergenic
TTCCCTTGAGAACTTGAGTA+AGG 0.464374 8_1:-61897740 None:intergenic
GGGGAGATCCAGAAGTTTGA+AGG 0.472729 8_1:-61897417 None:intergenic
ACAAATAGAGCTACCAAAGC+TGG 0.483596 8_1:+61896771 Msa1205550:CDS
TATGATTCTTGATTCTTCAA+AGG 0.498256 8_1:+61897443 Msa1205550:CDS
CTAGTTCTTCATCAGTTGGA+TGG 0.505033 8_1:-61896360 None:intergenic
CCAACTGATGAAGAACTAGT+TGG 0.507449 8_1:+61896364 Msa1205550:CDS
CAGTTAGTTCTATCGCCTAA+AGG 0.507948 8_1:-61896897 None:intergenic
CCAACTAGTTCTTCATCAGT+TGG 0.511441 8_1:-61896364 None:intergenic
CGAGATCTAAAGTACCCAAA+TGG 0.514202 8_1:+61896741 Msa1205550:CDS
TACCGAAACGAGATTCAGAA+TGG 0.514497 8_1:+61896703 Msa1205550:CDS
AAATTTGAGTAGGATAAAGT+AGG 0.517258 8_1:-61897665 None:intergenic
GTTTGAAGGATTGGTTTCTG+TGG 0.524525 8_1:-61897403 None:intergenic
ATACTATCTTAAAAGAAAAG+TGG 0.531146 8_1:+61896387 Msa1205550:CDS
TCACCTTACTCAAGTTCTCA+AGG 0.532937 8_1:+61897737 Msa1205550:CDS
TTTGATCCATGGGAGTTGCC+TGG 0.534126 8_1:+61896460 Msa1205550:CDS
TGCCTTGGTGATTCACAACT+AGG 0.543287 8_1:-61897617 None:intergenic
GATTGGTTTCTGTGGAAACA+TGG 0.551810 8_1:-61897395 None:intergenic
GTTGCAACAAGTTCCATCAA+TGG 0.552945 8_1:+61897276 Msa1205550:CDS
ATATGTTCCAATGATTGCCT+TGG 0.556930 8_1:-61897632 None:intergenic
GCTGGCTACTGGAAAGCCAC+TGG 0.557528 8_1:+61896789 Msa1205550:CDS
TTCAGCATTAAAATTTGAGT+AGG 0.564818 8_1:-61897675 None:intergenic
AAGAATCAAGAATCATATCA+GGG 0.565558 8_1:-61897437 None:intergenic
CCTTAAAATATGGAGAGTCT+TGG 0.569933 8_1:-61896956 None:intergenic
AAAAGAATGAGAAGAGCAAG+AGG 0.571312 8_1:+61897253 Msa1205550:CDS
TGTAGTTCATCCACTATCAC+AGG 0.581968 8_1:+61896837 Msa1205550:CDS
GTTGGATGGAAACGAAAACC+TGG 0.593509 8_1:-61896346 None:intergenic
ACTGGATCATGCAAGAGTAT+CGG 0.596245 8_1:+61896916 Msa1205550:CDS
CACCTTACTCAAGTTCTCAA+GGG 0.598211 8_1:+61897738 Msa1205550:CDS
AGATTACCAGGCAACTCCCA+TGG 0.598328 8_1:-61896466 None:intergenic
GAATAATGGATCACAAAATG+TGG 0.600990 8_1:+61897353 Msa1205550:CDS
GTCACTTGAGAATCTCATTG+AGG 0.608676 8_1:-61897307 None:intergenic
TATCTTAAAAGAAAAGTGGA+AGG 0.610976 8_1:+61896391 Msa1205550:CDS
AGAGTCTTGGCTAAGATCAT+CGG 0.612585 8_1:-61896943 None:intergenic
AGAAACATTGCAATATAACA+TGG 0.616189 8_1:+61896306 None:intergenic
TGTGGAAACATGGTTAAACT+CGG 0.617136 8_1:-61897385 None:intergenic
GAAGGAGCATTACTGCCACC+AGG 0.622199 8_1:+61896328 Msa1205550:CDS
ACATTGCAATATAACATGGA+AGG 0.636691 8_1:+61896310 Msa1205550:CDS
AAGAGAGAAAGATTGTGTGC+CGG 0.639026 8_1:+61896814 Msa1205550:CDS
CTCCTAGTTGTGAATCACCA+AGG 0.645942 8_1:+61897615 Msa1205550:CDS
CTTGGTGATTCACAACTAGG+AGG 0.658943 8_1:-61897614 None:intergenic
AAAGAATGAGAAGAGCAAGA+GGG 0.661577 8_1:+61897254 Msa1205550:CDS
TGATAGTGGATGAACTACAC+CGG 0.698203 8_1:-61896833 None:intergenic
AGAATCAAGAATCATATCAG+GGG 0.707288 8_1:-61897436 None:intergenic
GGATGGAAACGAAAACCTGG+TGG 0.763193 8_1:-61896343 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAGTATATTTCTAATGTA+AGG + chr8_1:61896542-61896561 Msa1205550:intron 15.0%
!! ATTATATGTACCTTAAAATA+TGG - chr8_1:61896969-61896988 None:intergenic 15.0%
!!! AATAGTATATTTCTAATGTA+AGG + chr8_1:61896542-61896561 Msa1205550:intron 15.0%
!! ATTATATGTACCTTAAAATA+TGG - chr8_1:61896969-61896988 None:intergenic 15.0%
!! ATACTATCTTAAAAGAAAAG+TGG + chr8_1:61896387-61896406 Msa1205550:CDS 20.0%
!! AATTTGTAAAAATCAATCAC+TGG - chr8_1:61896442-61896461 None:intergenic 20.0%
!!! ATTTTTACAAATTTGATCCA+TGG + chr8_1:61896449-61896468 Msa1205550:CDS 20.0%
!!! TTTTTACAAATTTGATCCAT+GGG + chr8_1:61896450-61896469 Msa1205550:CDS 20.0%
!! AACTATAATATGAACAAATG+AGG + chr8_1:61897488-61897507 Msa1205550:intron 20.0%
!! ATTTGATTATAAACCTCATA+AGG - chr8_1:61897797-61897816 None:intergenic 20.0%
!! ATACTATCTTAAAAGAAAAG+TGG + chr8_1:61896387-61896406 Msa1205550:CDS 20.0%
!! AATTTGTAAAAATCAATCAC+TGG - chr8_1:61896442-61896461 None:intergenic 20.0%
!!! ATTTTTACAAATTTGATCCA+TGG + chr8_1:61896449-61896468 Msa1205550:CDS 20.0%
!!! TTTTTACAAATTTGATCCAT+GGG + chr8_1:61896450-61896469 Msa1205550:CDS 20.0%
!! AACTATAATATGAACAAATG+AGG + chr8_1:61897488-61897507 Msa1205550:intron 20.0%
!! ATTTGATTATAAACCTCATA+AGG - chr8_1:61897797-61897816 None:intergenic 20.0%
! TATCTTAAAAGAAAAGTGGA+AGG + chr8_1:61896391-61896410 Msa1205550:CDS 25.0%
! TTCTAATGTAAGGTTTGATA+TGG + chr8_1:61896552-61896571 Msa1205550:intron 25.0%
! TAAAAGATTCTATTTCACAC+AGG - chr8_1:61896602-61896621 None:intergenic 25.0%
! TTACTGCATTGTTTATGATA+AGG + chr8_1:61896630-61896649 Msa1205550:intron 25.0%
! TATTTGTTCTTGATCCATTT+GGG - chr8_1:61896758-61896777 None:intergenic 25.0%
!!! AAAACACTTGTTTTCTATCT+TGG + chr8_1:61896867-61896886 Msa1205550:CDS 25.0%
!!! TCTCATTCTTTTTGATAACT+CGG - chr8_1:61897245-61897264 None:intergenic 25.0%
! AAGAATCAAGAATCATATCA+GGG - chr8_1:61897440-61897459 None:intergenic 25.0%
! TATGATTCTTGATTCTTCAA+AGG + chr8_1:61897443-61897462 Msa1205550:CDS 25.0%
! GAGATTGAATGACTATAATT+TGG + chr8_1:61897517-61897536 Msa1205550:intron 25.0%
! AAATTTGAGTAGGATAAAGT+AGG - chr8_1:61897668-61897687 None:intergenic 25.0%
! TTCAGCATTAAAATTTGAGT+AGG - chr8_1:61897678-61897697 None:intergenic 25.0%
! TCAGATAATGTAAGTCAAAA+TGG + chr8_1:61897707-61897726 Msa1205550:CDS 25.0%
! TATCTTAAAAGAAAAGTGGA+AGG + chr8_1:61896391-61896410 Msa1205550:CDS 25.0%
! TTCTAATGTAAGGTTTGATA+TGG + chr8_1:61896552-61896571 Msa1205550:intron 25.0%
! TAAAAGATTCTATTTCACAC+AGG - chr8_1:61896602-61896621 None:intergenic 25.0%
! TTACTGCATTGTTTATGATA+AGG + chr8_1:61896630-61896649 Msa1205550:intron 25.0%
! TATTTGTTCTTGATCCATTT+GGG - chr8_1:61896758-61896777 None:intergenic 25.0%
!!! AAAACACTTGTTTTCTATCT+TGG + chr8_1:61896867-61896886 Msa1205550:CDS 25.0%
!!! TCTCATTCTTTTTGATAACT+CGG - chr8_1:61897245-61897264 None:intergenic 25.0%
! AAGAATCAAGAATCATATCA+GGG - chr8_1:61897440-61897459 None:intergenic 25.0%
! TATGATTCTTGATTCTTCAA+AGG + chr8_1:61897443-61897462 Msa1205550:CDS 25.0%
! GAGATTGAATGACTATAATT+TGG + chr8_1:61897517-61897536 Msa1205550:intron 25.0%
! AAATTTGAGTAGGATAAAGT+AGG - chr8_1:61897668-61897687 None:intergenic 25.0%
! TTCAGCATTAAAATTTGAGT+AGG - chr8_1:61897678-61897697 None:intergenic 25.0%
! TCAGATAATGTAAGTCAAAA+TGG + chr8_1:61897707-61897726 Msa1205550:CDS 25.0%
ACATTGCAATATAACATGGA+AGG + chr8_1:61896310-61896329 Msa1205550:CDS 30.0%
ATGTGAAATTGAAGATTACC+AGG - chr8_1:61896481-61896500 None:intergenic 30.0%
TTTGAGAAGCCTAATTCATT+AGG + chr8_1:61896656-61896675 Msa1205550:intron 30.0%
CATTTCACACCTAATGAATT+AGG - chr8_1:61896668-61896687 None:intergenic 30.0%
CTATTTGTTCTTGATCCATT+TGG - chr8_1:61896759-61896778 None:intergenic 30.0%
!! ACTTGTTTTCTATCTTGGAA+GGG + chr8_1:61896872-61896891 Msa1205550:CDS 30.0%
!! AAGGAGTTTGTTTTCAATGT+AGG - chr8_1:61897104-61897123 None:intergenic 30.0%
ACAAAGCTAACACATTACTA+AGG - chr8_1:61897123-61897142 None:intergenic 30.0%
GAACGTTGAAAGACTAAATT+AGG + chr8_1:61897162-61897181 Msa1205550:intron 30.0%
! CATTTTGTGATCCATTATTC+AGG - chr8_1:61897353-61897372 None:intergenic 30.0%
!! GAATAATGGATCACAAAATG+TGG + chr8_1:61897353-61897372 Msa1205550:CDS 30.0%
AGAATCAAGAATCATATCAG+GGG - chr8_1:61897439-61897458 None:intergenic 30.0%
GAAGAATCAAGAATCATATC+AGG - chr8_1:61897441-61897460 None:intergenic 30.0%
! TCATGGACTATAATGGAAAT+TGG + chr8_1:61897765-61897784 Msa1205550:CDS 30.0%
! CATGGACTATAATGGAAATT+GGG + chr8_1:61897766-61897785 Msa1205550:CDS 30.0%
ACATTGCAATATAACATGGA+AGG + chr8_1:61896310-61896329 Msa1205550:CDS 30.0%
ATGTGAAATTGAAGATTACC+AGG - chr8_1:61896481-61896500 None:intergenic 30.0%
TTTGAGAAGCCTAATTCATT+AGG + chr8_1:61896656-61896675 Msa1205550:intron 30.0%
CATTTCACACCTAATGAATT+AGG - chr8_1:61896668-61896687 None:intergenic 30.0%
CTATTTGTTCTTGATCCATT+TGG - chr8_1:61896759-61896778 None:intergenic 30.0%
!! ACTTGTTTTCTATCTTGGAA+GGG + chr8_1:61896872-61896891 Msa1205550:CDS 30.0%
!! AAGGAGTTTGTTTTCAATGT+AGG - chr8_1:61897104-61897123 None:intergenic 30.0%
ACAAAGCTAACACATTACTA+AGG - chr8_1:61897123-61897142 None:intergenic 30.0%
GAACGTTGAAAGACTAAATT+AGG + chr8_1:61897162-61897181 Msa1205550:intron 30.0%
! CATTTTGTGATCCATTATTC+AGG - chr8_1:61897353-61897372 None:intergenic 30.0%
!! GAATAATGGATCACAAAATG+TGG + chr8_1:61897353-61897372 Msa1205550:CDS 30.0%
AGAATCAAGAATCATATCAG+GGG - chr8_1:61897439-61897458 None:intergenic 30.0%
GAAGAATCAAGAATCATATC+AGG - chr8_1:61897441-61897460 None:intergenic 30.0%
! TCATGGACTATAATGGAAAT+TGG + chr8_1:61897765-61897784 Msa1205550:CDS 30.0%
! CATGGACTATAATGGAAATT+GGG + chr8_1:61897766-61897785 Msa1205550:CDS 30.0%
AACCATTCTGAATCTCGTTT+CGG - chr8_1:61896708-61896727 None:intergenic 35.0%
! AATCTTTCTCTCTTTTCCAG+TGG - chr8_1:61896808-61896827 None:intergenic 35.0%
!! CACTTGTTTTCTATCTTGGA+AGG + chr8_1:61896871-61896890 Msa1205550:CDS 35.0%
CCTTAAAATATGGAGAGTCT+TGG - chr8_1:61896959-61896978 None:intergenic 35.0%
! CCAAGACTCTCCATATTTTA+AGG + chr8_1:61896956-61896975 Msa1205550:CDS 35.0%
! GTAGCGTCTTTGTATTTTCA+CGG + chr8_1:61897003-61897022 Msa1205550:intron 35.0%
AAAAGAATGAGAAGAGCAAG+AGG + chr8_1:61897253-61897272 Msa1205550:CDS 35.0%
AAAGAATGAGAAGAGCAAGA+GGG + chr8_1:61897254-61897273 Msa1205550:CDS 35.0%
TGTGGAAACATGGTTAAACT+CGG - chr8_1:61897388-61897407 None:intergenic 35.0%
AAACCAATCCTTCAAACTTC+TGG + chr8_1:61897409-61897428 Msa1205550:CDS 35.0%
! AGTTTTACTACACCAACTGT+AGG + chr8_1:61897553-61897572 Msa1205550:intron 35.0%
CTTTAGTATACTCCTACAGT+TGG - chr8_1:61897568-61897587 None:intergenic 35.0%
ATATGTTCCAATGATTGCCT+TGG - chr8_1:61897635-61897654 None:intergenic 35.0%
AAGTTCTCAAGGGAATTTCA+TGG + chr8_1:61897748-61897767 Msa1205550:CDS 35.0%
! GGGAATTTCATGGACTATAA+TGG + chr8_1:61897758-61897777 Msa1205550:CDS 35.0%
AAATTGGGATGTTCCTTATG+AGG + chr8_1:61897781-61897800 Msa1205550:CDS 35.0%
AACCATTCTGAATCTCGTTT+CGG - chr8_1:61896708-61896727 None:intergenic 35.0%
! AATCTTTCTCTCTTTTCCAG+TGG - chr8_1:61896808-61896827 None:intergenic 35.0%
!! CACTTGTTTTCTATCTTGGA+AGG + chr8_1:61896871-61896890 Msa1205550:CDS 35.0%
CCTTAAAATATGGAGAGTCT+TGG - chr8_1:61896959-61896978 None:intergenic 35.0%
! CCAAGACTCTCCATATTTTA+AGG + chr8_1:61896956-61896975 Msa1205550:CDS 35.0%
! GTAGCGTCTTTGTATTTTCA+CGG + chr8_1:61897003-61897022 Msa1205550:intron 35.0%
AAAAGAATGAGAAGAGCAAG+AGG + chr8_1:61897253-61897272 Msa1205550:CDS 35.0%
AAAGAATGAGAAGAGCAAGA+GGG + chr8_1:61897254-61897273 Msa1205550:CDS 35.0%
TGTGGAAACATGGTTAAACT+CGG - chr8_1:61897388-61897407 None:intergenic 35.0%
AAACCAATCCTTCAAACTTC+TGG + chr8_1:61897409-61897428 Msa1205550:CDS 35.0%
! AGTTTTACTACACCAACTGT+AGG + chr8_1:61897553-61897572 Msa1205550:intron 35.0%
CTTTAGTATACTCCTACAGT+TGG - chr8_1:61897568-61897587 None:intergenic 35.0%
ATATGTTCCAATGATTGCCT+TGG - chr8_1:61897635-61897654 None:intergenic 35.0%
AAGTTCTCAAGGGAATTTCA+TGG + chr8_1:61897748-61897767 Msa1205550:CDS 35.0%
! GGGAATTTCATGGACTATAA+TGG + chr8_1:61897758-61897777 Msa1205550:CDS 35.0%
AAATTGGGATGTTCCTTATG+AGG + chr8_1:61897781-61897800 Msa1205550:CDS 35.0%
! CTAGTTCTTCATCAGTTGGA+TGG - chr8_1:61896363-61896382 None:intergenic 40.0%
! CCAACTAGTTCTTCATCAGT+TGG - chr8_1:61896367-61896386 None:intergenic 40.0%
CCAACTGATGAAGAACTAGT+TGG + chr8_1:61896364-61896383 Msa1205550:CDS 40.0%
TACCGAAACGAGATTCAGAA+TGG + chr8_1:61896703-61896722 Msa1205550:CDS 40.0%
! CGAGATCTAAAGTACCCAAA+TGG + chr8_1:61896741-61896760 Msa1205550:CDS 40.0%
ACAAATAGAGCTACCAAAGC+TGG + chr8_1:61896771-61896790 Msa1205550:CDS 40.0%
AAGAGAGAAAGATTGTGTGC+CGG + chr8_1:61896814-61896833 Msa1205550:CDS 40.0%
!! TGATAGTGGATGAACTACAC+CGG - chr8_1:61896836-61896855 None:intergenic 40.0%
TGTAGTTCATCCACTATCAC+AGG + chr8_1:61896837-61896856 Msa1205550:CDS 40.0%
!! CAGTTAGTTCTATCGCCTAA+AGG - chr8_1:61896900-61896919 None:intergenic 40.0%
CTTTAGGCGATAGAACTAAC+TGG + chr8_1:61896898-61896917 Msa1205550:CDS 40.0%
! ACTGGATCATGCAAGAGTAT+CGG + chr8_1:61896916-61896935 Msa1205550:CDS 40.0%
AGAGTCTTGGCTAAGATCAT+CGG - chr8_1:61896946-61896965 None:intergenic 40.0%
TCAATTGCAAGGCTATGATC+TGG + chr8_1:61897047-61897066 Msa1205550:intron 40.0%
! GGAGCTTTTACTTTAACGTG+CGG + chr8_1:61897068-61897087 Msa1205550:intron 40.0%
! CTTTTACTTTAACGTGCGGT+GGG + chr8_1:61897072-61897091 Msa1205550:intron 40.0%
TGCATATATGTGGTTGCTGT+AGG + chr8_1:61897203-61897222 Msa1205550:intron 40.0%
GCATATATGTGGTTGCTGTA+GGG + chr8_1:61897204-61897223 Msa1205550:intron 40.0%
GTTGCAACAAGTTCCATCAA+TGG + chr8_1:61897276-61897295 Msa1205550:CDS 40.0%
GTCACTTGAGAATCTCATTG+AGG - chr8_1:61897310-61897329 None:intergenic 40.0%
CAAGCAAGTCACCTGAATAA+TGG + chr8_1:61897339-61897358 Msa1205550:CDS 40.0%
ACATGGTTAAACTCGGCAAT+TGG - chr8_1:61897381-61897400 None:intergenic 40.0%
!! GATTGGTTTCTGTGGAAACA+TGG - chr8_1:61897398-61897417 None:intergenic 40.0%
!! GTTTGAAGGATTGGTTTCTG+TGG - chr8_1:61897406-61897425 None:intergenic 40.0%
GATCCAGAAGTTTGAAGGAT+TGG - chr8_1:61897415-61897434 None:intergenic 40.0%
TGAATCACCAAGGCAATCAT+TGG + chr8_1:61897625-61897644 Msa1205550:CDS 40.0%
TCACCTTACTCAAGTTCTCA+AGG + chr8_1:61897737-61897756 Msa1205550:CDS 40.0%
CACCTTACTCAAGTTCTCAA+GGG + chr8_1:61897738-61897757 Msa1205550:CDS 40.0%
TTCCCTTGAGAACTTGAGTA+AGG - chr8_1:61897743-61897762 None:intergenic 40.0%
! CTAGTTCTTCATCAGTTGGA+TGG - chr8_1:61896363-61896382 None:intergenic 40.0%
! CCAACTAGTTCTTCATCAGT+TGG - chr8_1:61896367-61896386 None:intergenic 40.0%
CCAACTGATGAAGAACTAGT+TGG + chr8_1:61896364-61896383 Msa1205550:CDS 40.0%
TACCGAAACGAGATTCAGAA+TGG + chr8_1:61896703-61896722 Msa1205550:CDS 40.0%
! CGAGATCTAAAGTACCCAAA+TGG + chr8_1:61896741-61896760 Msa1205550:CDS 40.0%
ACAAATAGAGCTACCAAAGC+TGG + chr8_1:61896771-61896790 Msa1205550:CDS 40.0%
AAGAGAGAAAGATTGTGTGC+CGG + chr8_1:61896814-61896833 Msa1205550:CDS 40.0%
!! TGATAGTGGATGAACTACAC+CGG - chr8_1:61896836-61896855 None:intergenic 40.0%
TGTAGTTCATCCACTATCAC+AGG + chr8_1:61896837-61896856 Msa1205550:CDS 40.0%
!! CAGTTAGTTCTATCGCCTAA+AGG - chr8_1:61896900-61896919 None:intergenic 40.0%
CTTTAGGCGATAGAACTAAC+TGG + chr8_1:61896898-61896917 Msa1205550:CDS 40.0%
! ACTGGATCATGCAAGAGTAT+CGG + chr8_1:61896916-61896935 Msa1205550:CDS 40.0%
AGAGTCTTGGCTAAGATCAT+CGG - chr8_1:61896946-61896965 None:intergenic 40.0%
TCAATTGCAAGGCTATGATC+TGG + chr8_1:61897047-61897066 Msa1205550:intron 40.0%
! GGAGCTTTTACTTTAACGTG+CGG + chr8_1:61897068-61897087 Msa1205550:intron 40.0%
! CTTTTACTTTAACGTGCGGT+GGG + chr8_1:61897072-61897091 Msa1205550:intron 40.0%
TGCATATATGTGGTTGCTGT+AGG + chr8_1:61897203-61897222 Msa1205550:intron 40.0%
GCATATATGTGGTTGCTGTA+GGG + chr8_1:61897204-61897223 Msa1205550:intron 40.0%
GTTGCAACAAGTTCCATCAA+TGG + chr8_1:61897276-61897295 Msa1205550:CDS 40.0%
GTCACTTGAGAATCTCATTG+AGG - chr8_1:61897310-61897329 None:intergenic 40.0%
CAAGCAAGTCACCTGAATAA+TGG + chr8_1:61897339-61897358 Msa1205550:CDS 40.0%
ACATGGTTAAACTCGGCAAT+TGG - chr8_1:61897381-61897400 None:intergenic 40.0%
!! GATTGGTTTCTGTGGAAACA+TGG - chr8_1:61897398-61897417 None:intergenic 40.0%
!! GTTTGAAGGATTGGTTTCTG+TGG - chr8_1:61897406-61897425 None:intergenic 40.0%
GATCCAGAAGTTTGAAGGAT+TGG - chr8_1:61897415-61897434 None:intergenic 40.0%
TGAATCACCAAGGCAATCAT+TGG + chr8_1:61897625-61897644 Msa1205550:CDS 40.0%
TCACCTTACTCAAGTTCTCA+AGG + chr8_1:61897737-61897756 Msa1205550:CDS 40.0%
CACCTTACTCAAGTTCTCAA+GGG + chr8_1:61897738-61897757 Msa1205550:CDS 40.0%
TTCCCTTGAGAACTTGAGTA+AGG - chr8_1:61897743-61897762 None:intergenic 40.0%
GTTGGATGGAAACGAAAACC+TGG - chr8_1:61896349-61896368 None:intergenic 45.0%
TTTGCAGTTGCCTGTGATAG+TGG - chr8_1:61896850-61896869 None:intergenic 45.0%
TATCTTGGAAGGGCTCCTTT+AGG + chr8_1:61896882-61896901 Msa1205550:CDS 45.0%
TTGAACGCACGTCAATTGCA+AGG + chr8_1:61897036-61897055 Msa1205550:intron 45.0%
! GCTTTTACTTTAACGTGCGG+TGG + chr8_1:61897071-61897090 Msa1205550:intron 45.0%
TATATGTGGTTGCTGTAGGG+TGG + chr8_1:61897207-61897226 Msa1205550:intron 45.0%
TGAGGTCTCACTTCCATTGA+TGG - chr8_1:61897292-61897311 None:intergenic 45.0%
! CTTGGTGATTCACAACTAGG+AGG - chr8_1:61897617-61897636 None:intergenic 45.0%
CTCCTAGTTGTGAATCACCA+AGG + chr8_1:61897615-61897634 Msa1205550:CDS 45.0%
! TGCCTTGGTGATTCACAACT+AGG - chr8_1:61897620-61897639 None:intergenic 45.0%
GTTGGATGGAAACGAAAACC+TGG - chr8_1:61896349-61896368 None:intergenic 45.0%
TTTGCAGTTGCCTGTGATAG+TGG - chr8_1:61896850-61896869 None:intergenic 45.0%
TATCTTGGAAGGGCTCCTTT+AGG + chr8_1:61896882-61896901 Msa1205550:CDS 45.0%
TTGAACGCACGTCAATTGCA+AGG + chr8_1:61897036-61897055 Msa1205550:intron 45.0%
! GCTTTTACTTTAACGTGCGG+TGG + chr8_1:61897071-61897090 Msa1205550:intron 45.0%
TATATGTGGTTGCTGTAGGG+TGG + chr8_1:61897207-61897226 Msa1205550:intron 45.0%
TGAGGTCTCACTTCCATTGA+TGG - chr8_1:61897292-61897311 None:intergenic 45.0%
! CTTGGTGATTCACAACTAGG+AGG - chr8_1:61897617-61897636 None:intergenic 45.0%
CTCCTAGTTGTGAATCACCA+AGG + chr8_1:61897615-61897634 Msa1205550:CDS 45.0%
! TGCCTTGGTGATTCACAACT+AGG - chr8_1:61897620-61897639 None:intergenic 45.0%
GGATGGAAACGAAAACCTGG+TGG - chr8_1:61896346-61896365 None:intergenic 50.0%
TTTGATCCATGGGAGTTGCC+TGG + chr8_1:61896460-61896479 Msa1205550:CDS 50.0%
AGATTACCAGGCAACTCCCA+TGG - chr8_1:61896469-61896488 None:intergenic 50.0%
GGGGAGATCCAGAAGTTTGA+AGG - chr8_1:61897420-61897439 None:intergenic 50.0%
GGATGGAAACGAAAACCTGG+TGG - chr8_1:61896346-61896365 None:intergenic 50.0%
TTTGATCCATGGGAGTTGCC+TGG + chr8_1:61896460-61896479 Msa1205550:CDS 50.0%
AGATTACCAGGCAACTCCCA+TGG - chr8_1:61896469-61896488 None:intergenic 50.0%
GGGGAGATCCAGAAGTTTGA+AGG - chr8_1:61897420-61897439 None:intergenic 50.0%
!! GAAGGAGCATTACTGCCACC+AGG + chr8_1:61896328-61896347 Msa1205550:CDS 55.0%
GAGCTACCAAAGCTGGCTAC+TGG + chr8_1:61896778-61896797 Msa1205550:CDS 55.0%
GGCTTTCCAGTAGCCAGCTT+TGG - chr8_1:61896787-61896806 None:intergenic 55.0%
TGCACGCGCGTGCATATATG+TGG + chr8_1:61897193-61897212 Msa1205550:intron 55.0%
!! GAAGGAGCATTACTGCCACC+AGG + chr8_1:61896328-61896347 Msa1205550:CDS 55.0%
GAGCTACCAAAGCTGGCTAC+TGG + chr8_1:61896778-61896797 Msa1205550:CDS 55.0%
GGCTTTCCAGTAGCCAGCTT+TGG - chr8_1:61896787-61896806 None:intergenic 55.0%
TGCACGCGCGTGCATATATG+TGG + chr8_1:61897193-61897212 Msa1205550:intron 55.0%
GCTGGCTACTGGAAAGCCAC+TGG + chr8_1:61896789-61896808 Msa1205550:CDS 60.0%
GCTGGCTACTGGAAAGCCAC+TGG + chr8_1:61896789-61896808 Msa1205550:CDS 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 61896310 61897847 61896310 ID=Msa1205550;Name=Msa1205550
chr8_1 mRNA 61896310 61897847 61896310 ID=Msa1205550-mRNA-1;Parent=Msa1205550;Name=Msa1205550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|1|0.5|1|1|1|4|0|323
chr8_1 exon 61896310 61896481 61896310 ID=Msa1205550-mRNA-1:exon:20067;Parent=Msa1205550-mRNA-1
chr8_1 exon 61896691 61896977 61896691 ID=Msa1205550-mRNA-1:exon:20068;Parent=Msa1205550-mRNA-1
chr8_1 exon 61897225 61897464 61897225 ID=Msa1205550-mRNA-1:exon:20069;Parent=Msa1205550-mRNA-1
chr8_1 exon 61897575 61897847 61897575 ID=Msa1205550-mRNA-1:exon:20070;Parent=Msa1205550-mRNA-1
chr8_1 CDS 61896310 61896481 61896310 ID=Msa1205550-mRNA-1:cds;Parent=Msa1205550-mRNA-1
chr8_1 CDS 61896691 61896977 61896691 ID=Msa1205550-mRNA-1:cds;Parent=Msa1205550-mRNA-1
chr8_1 CDS 61897225 61897464 61897225 ID=Msa1205550-mRNA-1:cds;Parent=Msa1205550-mRNA-1
chr8_1 CDS 61897575 61897847 61897575 ID=Msa1205550-mRNA-1:cds;Parent=Msa1205550-mRNA-1
Gene Sequence

>Msa1205550

ACATTGCAATATAACATGGAAGGAGCATTACTGCCACCAGGTTTTCGTTTCCATCCAACTGATGAAGAACTAGTTGGATACTATCTTAAAAGAAAAGTGGAAGGACTTGAAATTGAGCTTGATGTTATTCCAGTGATTGATTTTTACAAATTTGATCCATGGGAGTTGCCTGAGAAATCATTTCTACCGAAACGAGATTCAGAATGGTTTTTCTATTGTACGCGAGATCTAAAGTACCCAAATGGATCAAGAACAAATAGAGCTACCAAAGCTGGCTACTGGAAAGCCACTGGAAAAGAGAGAAAGATTGTGTGCCGGTGTAGTTCATCCACTATCACAGGCAACTGCAAAACACTTGTTTTCTATCTTGGAAGGGCTCCTTTAGGCGATAGAACTAACTGGATCATGCAAGAGTATCGGCTCACCGATGATCTTAGCCAAGACTCTCCATATTTTAAGGGTGGTTTAGCTTTGTGCCGAGTTATCAAAAAGAATGAGAAGAGCAAGAGGGTTGCAACAAGTTCCATCAATGGAAGTGAGACCTCAATGAGATTCTCAAGTGACGTTTCTTCTCAAGCAAGTCACCTGAATAATGGATCACAAAATGTGGCTCCAATTGCCGAGTTTAACCATGTTTCCACAGAAACCAATCCTTCAAACTTCTGGATCTCCCCTGATATGATTCTTGATTCTTCAAAGGAGTATACTAAAGTACAAGATGCACTGTTTGAATATTTTCCTCCTAGTTGTGAATCACCAAGGCAATCATTGGAACATATAACAACTTCACCTACTTTATCCTACTCAAATTTTAATGCTGAAAATGAATTTTCAGATAATGTAAGTCAAAATGGATGCATGTCACCTTACTCAAGTTCTCAAGGGAATTTCATGGACTATAATGGAAATTGGGATGTTCCTTATGAGGTTTATAATCAAATTAATTCAGTCTCATATCCTGAGCCTTTCTAA
Protein sequence

>Msa1205550

TLQYNMEGALLPPGFRFHPTDEELVGYYLKRKVEGLEIELDVIPVIDFYKFDPWELPEKSFLPKRDSEWFFYCTRDLKYPNGSRTNRATKAGYWKATGKERKIVCRCSSSTITGNCKTLVFYLGRAPLGDRTNWIMQEYRLTDDLSQDSPYFKGGLALCRVIKKNEKSKRVATSSINGSETSMRFSSDVSSQASHLNNGSQNVAPIAEFNHVSTETNPSNFWISPDMILDSSKEYTKVQDALFEYFPPSCESPRQSLEHITTSPTLSYSNFNAENEFSDNVSQNGCMSPYSSSQGNFMDYNGNWDVPYEVYNQINSVSYPEPF*