AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0664130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664130 MtrunA17_Chr4g0002121 95.775 284 11 1 14 297 17 299 0.0 533
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0664130 AT1G16080.1 72.203 295 82 0 3 297 19 313 1.65e-154 434

Find 108 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGAGTATTAGTTACTTAC+AGG 0.217913 4_4:-3160429 Msa0664130:three_prime_UTR
TGCTTATGGCAAGTGGTCTT+TGG 0.280904 4_4:-3162665 Msa0664130:CDS
TTTCTAGTACAAACCAAAAT+AGG 0.303632 4_4:+3163409 None:intergenic
GACTCTGAATCTGAAATTCT+TGG 0.306101 4_4:+3163585 None:intergenic
TTGAAGCAATATGATGTAAA+TGG 0.309823 4_4:+3160372 None:intergenic
TTTCAACTCTTTAAGCCATT+TGG 0.333255 4_4:+3160541 None:intergenic
TGGAAAAGCTTTAGAAGGTA+TGG 0.356993 4_4:-3163491 Msa0664130:CDS
CTGATGCTAGTTCTGCTATC+AGG 0.381223 4_4:+3161144 None:intergenic
ATTTGTTCTGTCATGCTTGT+TGG 0.385378 4_4:-3161919 Msa0664130:CDS
TAAGCAGCTGTCAATCCTTC+AGG 0.391739 4_4:+3162682 None:intergenic
AGAGTTGGAAAAGCTTTAGA+AGG 0.394622 4_4:-3163496 Msa0664130:CDS
GAAGGATTGACAGCTGCTTA+TGG 0.394793 4_4:-3162679 Msa0664130:CDS
TTCTGTTGGTGTTGTGGAAA+AGG 0.395942 4_4:-3161878 Msa0664130:CDS
TCACTTTCCCACGGCAGTTA+AGG 0.401542 4_4:-3161045 Msa0664130:CDS
TTTCTTGCAGCAAGTATATG+AGG 0.403444 4_4:+3160204 None:intergenic
AGGGGTTTCTGTTGGTGTTG+TGG 0.406514 4_4:-3161884 Msa0664130:CDS
GTATCAGTCTTACCATCAAT+AGG 0.407023 4_4:+3162709 None:intergenic
ATCAGCAGCAGCTAGTGAAA+AGG 0.412413 4_4:-3161126 Msa0664130:CDS
AAGTCTACACATATAGCTAA+TGG 0.412739 4_4:+3160467 None:intergenic
TATCAGTCTTACCATCAATA+GGG 0.414325 4_4:+3162710 None:intergenic
TCAGCAGCAGCTAGTGAAAA+GGG 0.417729 4_4:-3161125 Msa0664130:CDS
GAGAGTAAAGGTTTGAAAGA+TGG 0.424292 4_4:-3162778 Msa0664130:CDS
CTTGGAGAGTCCCCTATTGA+TGG 0.426493 4_4:-3162721 Msa0664130:CDS
GGTCATGTTTGCAGTTCAAA+TGG 0.443722 4_4:-3160637 Msa0664130:intron
ACGGTTCCAACATTCCATTC+TGG 0.447867 4_4:+3162806 None:intergenic
GACATGGATCCTGCTTGCCT+TGG 0.448950 4_4:+3160573 None:intergenic
AAGTGTGTGTGGGCTGATAT+TGG 0.451079 4_4:-3160252 Msa0664130:three_prime_UTR
AGAGTAAAGGTTTGAAAGAT+GGG 0.455581 4_4:-3162777 Msa0664130:CDS
CCGGCCGTCATTGTCGGCGG+TGG 0.458905 4_4:-3163520 Msa0664130:CDS
GTTGCTCCGGCCGTCATTGT+CGG 0.460579 4_4:-3163526 Msa0664130:CDS
TTGTTGGAGCGCGTCATGGA+GGG 0.466204 4_4:-3161903 Msa0664130:CDS
ACTCTGAATCTGAAATTCTT+GGG 0.469018 4_4:+3163586 None:intergenic
AGATGTTAGAGAAGCTCATA+TGG 0.474520 4_4:-3161942 Msa0664130:CDS
GGAAAAGCTTTAGAAGGTAT+GGG 0.482710 4_4:-3163490 Msa0664130:CDS
ATACCTTTCCATCTCGAAAG+AGG 0.483301 4_4:+3163355 None:intergenic
ATAGGACCTTCAAAATCAAC+GGG 0.484016 4_4:+3163427 None:intergenic
TATTTCGCAGTGTCAAAACT+TGG 0.486806 4_4:-3162739 Msa0664130:CDS
CGTCATGGAGGGGTTTCTGT+TGG 0.491161 4_4:-3161892 Msa0664130:CDS
ACATGGATCCTGCTTGCCTT+GGG 0.493651 4_4:+3160574 None:intergenic
GGCTATTGCCCAAGGCAAGC+AGG 0.503997 4_4:-3160582 Msa0664130:CDS
AGTTCAAATGGAGGAATGGT+TGG 0.513675 4_4:-3160625 Msa0664130:CDS
TGTTGGAGCGCGTCATGGAG+GGG 0.514554 4_4:-3161902 Msa0664130:CDS
CTTGTTGGAGCGCGTCATGG+AGG 0.518604 4_4:-3161904 Msa0664130:CDS
ACCTATAAAACAAGTGTGTG+TGG 0.518983 4_4:-3160263 Msa0664130:three_prime_UTR
TGTGTGGGCTGATATTGGTT+GGG 0.519870 4_4:-3160247 Msa0664130:three_prime_UTR
ATTGTCGGCGGTGGAAGAGT+TGG 0.520026 4_4:-3163511 Msa0664130:CDS
ATGCTTGTTGGAGCGCGTCA+TGG 0.522740 4_4:-3161907 Msa0664130:CDS
GACGGCCGGAGCAACTTTAG+TGG 0.529509 4_4:+3163534 None:intergenic
CTTTACCTCCTTAACTGCCG+TGG 0.529569 4_4:+3161037 None:intergenic
CTCGGGAGTACGCACACAAA+CGG 0.530423 4_4:+3161075 None:intergenic
CACCACCACTAAAGTTGCTC+CGG 0.536001 4_4:-3163539 Msa0664130:CDS
AGCTGTCAATCCTTCAGGAT+TGG 0.538382 4_4:+3162687 None:intergenic
CAATATGATGTAAATGGACA+TGG 0.539245 4_4:+3160378 None:intergenic
AAACCACTCCTCTTTCGAGA+TGG 0.539592 4_4:-3163363 Msa0664130:CDS
GTGTGTGGGCTGATATTGGT+TGG 0.541222 4_4:-3160248 Msa0664130:three_prime_UTR
GTTTCTGAAAGATTGAAAGC+TGG 0.541448 4_4:-3162640 Msa0664130:CDS
CTGCGAAATATGCCAACACT+TGG 0.541538 4_4:+3162752 None:intergenic
CATGTCCTATGCATACCAAA+TGG 0.544512 4_4:-3160556 Msa0664130:CDS
GGGAAAGTGAGCAACAGCTC+GGG 0.545271 4_4:+3161058 None:intergenic
TGGGAAAGTGAGCAACAGCT+CGG 0.549510 4_4:+3161057 None:intergenic
GAACCGTGGCTTGAGAGTAA+AGG 0.552420 4_4:-3162790 Msa0664130:CDS
AATAGGACCTTCAAAATCAA+CGG 0.556089 4_4:+3163426 None:intergenic
TTAAGCCATTTGGTATGCAT+AGG 0.559098 4_4:+3160551 None:intergenic
CGCACACAAACGGTCTTCCA+TGG 0.562813 4_4:+3161085 None:intergenic
TTCTTGCAGCAAGTATATGA+GGG 0.564452 4_4:+3160205 None:intergenic
AAGGTATAAGGATTAGCCAT+GGG 0.564526 4_4:+3160166 None:intergenic
GTTAAAGTTTGAAGAAGCCA+TGG 0.564615 4_4:-3161102 Msa0664130:CDS
TGAATACTACCTTGCAAGAG+AGG 0.565186 4_4:+3162614 None:intergenic
GCTTTAGAAGGTATGGGAGA+TGG 0.570273 4_4:-3163484 Msa0664130:CDS
TCTTCCACCGCCGACAATGA+CGG 0.573890 4_4:+3163516 None:intergenic
TTTACCTCCTTAACTGCCGT+GGG 0.574195 4_4:+3161038 None:intergenic
AGCTGGAGGCCTCTCTTGCA+AGG 0.574480 4_4:-3162623 Msa0664130:intron
ATTCAGAGTCTCTTCCGCCA+TGG 0.580472 4_4:-3163572 Msa0664130:CDS
GAAAGATGGGAACCAAGTGT+TGG 0.583229 4_4:-3162764 Msa0664130:CDS
CGCTGTTGCTGTAAGAGTGG+AGG 0.583827 4_4:+3163612 None:intergenic
CTTTCCCACGGCAGTTAAGG+AGG 0.584441 4_4:-3161042 Msa0664130:intron
TCTGAGAAGGCTATTGCCCA+AGG 0.586147 4_4:-3160590 Msa0664130:CDS
GGTGGTGACGGTAGAAGCCA+TGG 0.587494 4_4:+3163555 None:intergenic
TTGAACTCTCATGTGTCACT+AGG 0.596365 4_4:-3160500 Msa0664130:three_prime_UTR
TTGCAGTTCAAATGGAGGAA+TGG 0.597693 4_4:-3160629 Msa0664130:intron
ATCAGTCTTACCATCAATAG+GGG 0.599930 4_4:+3162711 None:intergenic
TCTGAAAGATTGAAAGCTGG+AGG 0.599953 4_4:-3162637 Msa0664130:CDS
CCACCGCCGACAATGACGGC+CGG 0.601720 4_4:+3163520 None:intergenic
AGCTGTTGCTCACTTTCCCA+CGG 0.605457 4_4:-3161054 Msa0664130:CDS
CAGCAATAGCAATGATGATG+AGG 0.606129 4_4:+3163682 None:intergenic
CATGTTTGCAGTTCAAATGG+AGG 0.608904 4_4:-3160634 Msa0664130:intron
ACTCCTCTTTCGAGATGGAA+AGG 0.612983 4_4:-3163358 Msa0664130:intron
AGCAACTTTAGTGGTGGTGA+CGG 0.613469 4_4:+3163543 None:intergenic
TGACAGCTGCTTATGGCAAG+TGG 0.617113 4_4:-3162672 Msa0664130:CDS
AAGACTGATACCAATCCTGA+AGG 0.623096 4_4:-3162697 Msa0664130:CDS
GGCCGGAGCAACTTTAGTGG+TGG 0.623121 4_4:+3163537 None:intergenic
GAAGGTATAAGGATTAGCCA+TGG 0.627990 4_4:+3160165 None:intergenic
TTTCCATCTCGAAAGAGGAG+TGG 0.628188 4_4:+3163360 None:intergenic
CTGAGAAAGAAAAGAACGAG+TGG 0.629515 4_4:-3163786 Msa0664130:five_prime_UTR
CATTTGGTATGCATAGGACA+TGG 0.629892 4_4:+3160557 None:intergenic
CCTATAAAACAAGTGTGTGT+GGG 0.629901 4_4:-3160262 Msa0664130:three_prime_UTR
AACAAGTAGTAGTACTACAA+AGG 0.631659 4_4:+3160348 None:intergenic
TGGACATGGTTATCTACATG+TGG 0.633706 4_4:+3160392 None:intergenic
GCTCCGGCCGTCATTGTCGG+CGG 0.635181 4_4:-3163523 Msa0664130:CDS
AAAGCTTACTTACTTCAAGG+TGG 0.643257 4_4:+3161851 None:intergenic
AAGCGCTGTTGCTGTAAGAG+TGG 0.643492 4_4:+3163609 None:intergenic
AGAATGGAATGTTGGAACCG+TGG 0.644899 4_4:-3162804 Msa0664130:CDS
AAACCTTTACTCTCAAGCCA+CGG 0.646640 4_4:+3162787 None:intergenic
CAGCAGCAGCTAGTGAAAAG+GGG 0.664557 4_4:-3161124 Msa0664130:CDS
AGGTATAAGGATTAGCCATG+GGG 0.695942 4_4:+3160167 None:intergenic
AAAGATCTTGTTGTGAAACG+TGG 0.716380 4_4:-3163460 Msa0664130:CDS
GGTATAAGGATTAGCCATGG+GGG 0.734429 4_4:+3160168 None:intergenic
GGTGACGGTAGAAGCCATGG+CGG 0.761423 4_4:+3163558 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATAAAAACTTATTTTAC+GGG - chr4_4:3161542-3161561 Msa0664130:intron 10.0%
!! CCATTTAAAAATTAAAAATA+TGG + chr4_4:3162613-3162632 None:intergenic 10.0%
!!! CCATATTTTTAATTTTTAAA+TGG - chr4_4:3162610-3162629 Msa0664130:intron 10.0%
!!! TATTTTTAATGACATAAAAG+AGG - chr4_4:3161145-3161164 Msa0664130:CDS 15.0%
!!! ATTTTTAATGACATAAAAGA+GGG - chr4_4:3161146-3161165 Msa0664130:CDS 15.0%
!! GTTTATAATGAATTATTAAG+CGG - chr4_4:3162411-3162430 Msa0664130:intron 15.0%
!!! GAACATATTTAATTTTAACT+TGG + chr4_4:3162702-3162721 None:intergenic 15.0%
!! ATTATGAATGTATTCTAATT+GGG + chr4_4:3163358-3163377 None:intergenic 15.0%
!! AATTATGAATGTATTCTAAT+TGG + chr4_4:3163359-3163378 None:intergenic 15.0%
!!! ACTGTACTTTATTTTGTTAT+GGG + chr4_4:3160249-3160268 None:intergenic 20.0%
!!! TACTGTACTTTATTTTGTTA+TGG + chr4_4:3160250-3160269 None:intergenic 20.0%
!! ATTAAGAAGTTTACCAAAAA+AGG + chr4_4:3160854-3160873 None:intergenic 20.0%
!!! TAGAAGAAAATTAATGGATA+TGG + chr4_4:3161849-3161868 None:intergenic 20.0%
!!! ATCATTTTAGTATTGCTATA+TGG - chr4_4:3162586-3162605 Msa0664130:intron 20.0%
!!! TCATTTTAGTATTGCTATAT+GGG - chr4_4:3162587-3162606 Msa0664130:intron 20.0%
!! ATAACATGAGAATAAATTAG+AGG - chr4_4:3163132-3163151 Msa0664130:intron 20.0%
!! TTAGTGTTTAATCAATATCT+TGG - chr4_4:3163423-3163442 Msa0664130:CDS 20.0%
!!! CTGTACTTTATTTTGTTATG+GGG + chr4_4:3160248-3160267 None:intergenic 25.0%
!! TTTCTAGTACAAACCAAAAT+AGG + chr4_4:3160675-3160694 None:intergenic 25.0%
! CTAAAGATTGTGATACTTAT+GGG + chr4_4:3160830-3160849 None:intergenic 25.0%
! GTTTGATATTTGTACAATAC+CGG - chr4_4:3161000-3161019 Msa0664130:intron 25.0%
!!! GATTTTTGAGGAACTAATTA+TGG - chr4_4:3161168-3161187 Msa0664130:intron 25.0%
!!! TAAAAACTTATTTTACGGGA+CGG - chr4_4:3161546-3161565 Msa0664130:intron 25.0%
! ATCTTTAGATGAAAATCAGA+AGG - chr4_4:3161693-3161712 Msa0664130:intron 25.0%
!!! TTCACGTTTATTTTCCAAAT+CGG + chr4_4:3161742-3161761 None:intergenic 25.0%
! CGAAGATAGAAGAAAATTAA+TGG + chr4_4:3161855-3161874 None:intergenic 25.0%
! TTTGTTACTATTTCAAGCTT+AGG + chr4_4:3161888-3161907 None:intergenic 25.0%
! AAGTTTATGAATTTCAAGCA+CGG - chr4_4:3161930-3161949 Msa0664130:CDS 25.0%
!! GCATATTAACTTTGAGAAAA+TGG + chr4_4:3162263-3162282 None:intergenic 25.0%
! ATTTGTATATATAGAGAGAG+TGG + chr4_4:3162477-3162496 None:intergenic 25.0%
! CAATCTATTTATTCAGTTGT+TGG - chr4_4:3162728-3162747 Msa0664130:CDS 25.0%
! TTATTCTCATGTTATCAGTA+TGG + chr4_4:3163127-3163146 None:intergenic 25.0%
!!! AGTTGGATTATTTTTTGGTT+AGG + chr4_4:3163309-3163328 None:intergenic 25.0%
!!! TGATGAGTTGGATTATTTTT+TGG + chr4_4:3163314-3163333 None:intergenic 25.0%
!!! AAAGAGTATTAGTTACTTAC+AGG - chr4_4:3163652-3163671 Msa0664130:exon 25.0%
! TTGAAGCAATATGATGTAAA+TGG + chr4_4:3163712-3163731 None:intergenic 25.0%
!!! ACTTTATTTTGTTATGGGGA+AGG + chr4_4:3160244-3160263 None:intergenic 30.0%
! ACTCTGAATCTGAAATTCTT+GGG + chr4_4:3160498-3160517 None:intergenic 30.0%
AATAGGACCTTCAAAATCAA+CGG + chr4_4:3160658-3160677 None:intergenic 30.0%
!! TGATTTTGAAGGTCCTATTT+TGG - chr4_4:3160659-3160678 Msa0664130:intron 30.0%
CCTAAAGAATGTGAAACTTA+TGG + chr4_4:3160770-3160789 None:intergenic 30.0%
CCATAAGTTTCACATTCTTT+AGG - chr4_4:3160767-3160786 Msa0664130:intron 30.0%
CCTAAAGATTGTGATACTTA+TGG + chr4_4:3160831-3160850 None:intergenic 30.0%
CCATAAGTATCACAATCTTT+AGG - chr4_4:3160828-3160847 Msa0664130:intron 30.0%
TATGCGTTGAAAGTTCTATA+TGG - chr4_4:3160962-3160981 Msa0664130:intron 30.0%
! ACATAAAAGAGGGATTTTTG+AGG - chr4_4:3161156-3161175 Msa0664130:intron 30.0%
AATGAGTTGTTACTATCGTT+TGG - chr4_4:3161231-3161250 Msa0664130:intron 30.0%
AGAGTAAAGGTTTGAAAGAT+GGG - chr4_4:3161304-3161323 Msa0664130:intron 30.0%
TATCAGTCTTACCATCAATA+GGG + chr4_4:3161374-3161393 None:intergenic 30.0%
GTAACCAAAACAAGAAAACT+TGG + chr4_4:3161521-3161540 None:intergenic 30.0%
!! CTCACGTGTTATTGTATTTT+TGG - chr4_4:3161609-3161628 Msa0664130:intron 30.0%
! GGATTGCTTAACAATTTTTC+TGG - chr4_4:3161630-3161649 Msa0664130:intron 30.0%
AAATCTTAGTAAGTCCGATT+TGG - chr4_4:3161725-3161744 Msa0664130:intron 30.0%
GTCATTCTATCTTCATTCAA+CGG - chr4_4:3161768-3161787 Msa0664130:intron 30.0%
! TTTTCTTCTATCTTCGATGT+TGG - chr4_4:3161859-3161878 Msa0664130:intron 30.0%
GGAAAATTCCTAAGATTAGA+GGG - chr4_4:3161951-3161970 Msa0664130:CDS 30.0%
GAAAATTCCTAAGATTAGAG+GGG - chr4_4:3161952-3161971 Msa0664130:CDS 30.0%
AATTAAACCCCTCTAATCTT+AGG + chr4_4:3161962-3161981 None:intergenic 30.0%
! AACTTTGAGAAAATGGCAAT+AGG + chr4_4:3162256-3162275 None:intergenic 30.0%
TTTGTCAATCAACATTTGCT+TGG - chr4_4:3162289-3162308 Msa0664130:intron 30.0%
! AATTGTGTCGTTAAGATAGT+TGG - chr4_4:3162351-3162370 Msa0664130:intron 30.0%
AAATTGATTACCTATGTGTC+TGG - chr4_4:3162797-3162816 Msa0664130:CDS 30.0%
AATTGATTACCTATGTGTCT+GGG - chr4_4:3162798-3162817 Msa0664130:CDS 30.0%
TCAATTTCATAGTTGCAACA+TGG + chr4_4:3162858-3162877 None:intergenic 30.0%
TCATCTGTGAAATATAAGAC+TGG + chr4_4:3163264-3163283 None:intergenic 30.0%
GTCTTATATTTCACAGATGA+TGG - chr4_4:3163264-3163283 Msa0664130:intron 30.0%
ATGAATGAAATGTGATGAGT+TGG + chr4_4:3163326-3163345 None:intergenic 30.0%
TTTCAACTCTTTAAGCCATT+TGG + chr4_4:3163543-3163562 None:intergenic 30.0%
AAGTCTACACATATAGCTAA+TGG + chr4_4:3163617-3163636 None:intergenic 30.0%
CAATATGATGTAAATGGACA+TGG + chr4_4:3163706-3163725 None:intergenic 30.0%
AACAAGTAGTAGTACTACAA+AGG + chr4_4:3163736-3163755 None:intergenic 30.0%
AAAAATGAAAACGTGGAGGA+AGG - chr4_4:3160179-3160198 Msa0664130:three_prime_UTR 35.0%
! GACTCTGAATCTGAAATTCT+TGG + chr4_4:3160499-3160518 None:intergenic 35.0%
!! AGAGTTGGAAAAGCTTTAGA+AGG - chr4_4:3160585-3160604 Msa0664130:CDS 35.0%
!! TGGAAAAGCTTTAGAAGGTA+TGG - chr4_4:3160590-3160609 Msa0664130:CDS 35.0%
!! GGAAAAGCTTTAGAAGGTAT+GGG - chr4_4:3160591-3160610 Msa0664130:CDS 35.0%
! AAAGATCTTGTTGTGAAACG+TGG - chr4_4:3160621-3160640 Msa0664130:CDS 35.0%
!!! TCAATTCCCGTTGATTTTGA+AGG - chr4_4:3160648-3160667 Msa0664130:intron 35.0%
ATAGGACCTTCAAAATCAAC+GGG + chr4_4:3160657-3160676 None:intergenic 35.0%
! TCACATTCTTTAGGCTTGTT+TGG - chr4_4:3160776-3160795 Msa0664130:intron 35.0%
TGTGATACTTATGGGACTAA+TGG + chr4_4:3160822-3160841 None:intergenic 35.0%
!!! CACAATCTTTAGGCCTTTTT+TGG - chr4_4:3160838-3160857 Msa0664130:intron 35.0%
! TTTTATACAACCACATGTGC+CGG + chr4_4:3161022-3161041 None:intergenic 35.0%
!! GTTGATGTTTCTGTCTTTTC+TGG - chr4_4:3161072-3161091 Msa0664130:CDS 35.0%
!!! GATTTGGTGTTTTTCCAGAA+TGG - chr4_4:3161261-3161280 Msa0664130:intron 35.0%
! GTTTTTCCAGAATGGAATGT+TGG - chr4_4:3161269-3161288 Msa0664130:intron 35.0%
GAGAGTAAAGGTTTGAAAGA+TGG - chr4_4:3161303-3161322 Msa0664130:intron 35.0%
TATTTCGCAGTGTCAAAACT+TGG - chr4_4:3161342-3161361 Msa0664130:intron 35.0%
ATCAGTCTTACCATCAATAG+GGG + chr4_4:3161373-3161392 None:intergenic 35.0%
GTATCAGTCTTACCATCAAT+AGG + chr4_4:3161375-3161394 None:intergenic 35.0%
! GTTTCTGAAAGATTGAAAGC+TGG - chr4_4:3161441-3161460 Msa0664130:intron 35.0%
AAACAAGAAAACTTGGCTAC+TGG + chr4_4:3161514-3161533 None:intergenic 35.0%
!! GTAGCCAAGTTTTCTTGTTT+TGG - chr4_4:3161514-3161533 Msa0664130:intron 35.0%
!!! GGACCTGTTGTTTTCTTTTT+GGG - chr4_4:3161567-3161586 Msa0664130:intron 35.0%
TCTCCCAAAAAGAAAACAAC+AGG + chr4_4:3161573-3161592 None:intergenic 35.0%
ATTCTGATTCAACTGAACTC+TGG + chr4_4:3161675-3161694 None:intergenic 35.0%
GGTTTCGATATATACAGTGA+TGG - chr4_4:3161789-3161808 Msa0664130:intron 35.0%
CGGAAAATTCCTAAGATTAG+AGG - chr4_4:3161950-3161969 Msa0664130:CDS 35.0%
AGATGTTAGAGAAGCTCATA+TGG - chr4_4:3162139-3162158 Msa0664130:intron 35.0%
ATTTGTTCTGTCATGCTTGT+TGG - chr4_4:3162162-3162181 Msa0664130:intron 35.0%
AAAGCTTACTTACTTCAAGG+TGG + chr4_4:3162233-3162252 None:intergenic 35.0%
AGGAAAGCTTACTTACTTCA+AGG + chr4_4:3162236-3162255 None:intergenic 35.0%
TGTGTCAGTGTTATCATGTA+TGG - chr4_4:3162499-3162518 Msa0664130:intron 35.0%
ATCAATTCCTGTGTGCAAAT+AGG - chr4_4:3162650-3162669 Msa0664130:CDS 35.0%
AGATATTATCCCAGACACAT+AGG + chr4_4:3162810-3162829 None:intergenic 35.0%
GTTAAAGTTTGAAGAAGCCA+TGG - chr4_4:3162979-3162998 Msa0664130:intron 35.0%
AGAGAATTTCGTTCTTTGTC+TGG - chr4_4:3163221-3163240 Msa0664130:intron 35.0%
!!! GTTTTTTGCTCTTTCTGAGA+AGG - chr4_4:3163478-3163497 Msa0664130:CDS 35.0%
TTAAGCCATTTGGTATGCAT+AGG + chr4_4:3163533-3163552 None:intergenic 35.0%
ACCTATAAAACAAGTGTGTG+TGG - chr4_4:3163818-3163837 Msa0664130:five_prime_UTR 35.0%
CCTATAAAACAAGTGTGTGT+GGG - chr4_4:3163819-3163838 Msa0664130:five_prime_UTR 35.0%
TTCTTGCAGCAAGTATATGA+GGG + chr4_4:3163879-3163898 None:intergenic 35.0%
TTTCTTGCAGCAAGTATATG+AGG + chr4_4:3163880-3163899 None:intergenic 35.0%
! AATTTTACTTCATACCCCCA+TGG - chr4_4:3163899-3163918 Msa0664130:five_prime_UTR 35.0%
CTGAGAAAGAAAAGAACGAG+TGG - chr4_4:3160295-3160314 Msa0664130:three_prime_UTR 40.0%
! CAGCAATAGCAATGATGATG+AGG + chr4_4:3160402-3160421 None:intergenic 40.0%
ATACCTTTCCATCTCGAAAG+AGG + chr4_4:3160729-3160748 None:intergenic 40.0%
! GTTGTTACTATCGTTTGGTG+TGG - chr4_4:3161236-3161255 Msa0664130:intron 40.0%
AAACCTTTACTCTCAAGCCA+CGG + chr4_4:3161297-3161316 None:intergenic 40.0%
AAGACTGATACCAATCCTGA+AGG - chr4_4:3161384-3161403 Msa0664130:intron 40.0%
TCTGAAAGATTGAAAGCTGG+AGG - chr4_4:3161444-3161463 Msa0664130:intron 40.0%
TGAATACTACCTTGCAAGAG+AGG + chr4_4:3161470-3161489 None:intergenic 40.0%
!!! CGGACCTGTTGTTTTCTTTT+TGG - chr4_4:3161566-3161585 Msa0664130:intron 40.0%
ATGCTTCCTTATCCAAAACC+TGG + chr4_4:3162110-3162129 None:intergenic 40.0%
!! TTCTGTTGGTGTTGTGGAAA+AGG - chr4_4:3162203-3162222 Msa0664130:intron 40.0%
GGATATTGCAATCAGTGAGT+TGG - chr4_4:3162372-3162391 Msa0664130:intron 40.0%
! TGCAATCAGTGAGTTGGATT+AGG - chr4_4:3162378-3162397 Msa0664130:intron 40.0%
! GCAATCAGTGAGTTGGATTA+GGG - chr4_4:3162379-3162398 Msa0664130:intron 40.0%
AGTGGCAATACATTGACAGT+AGG + chr4_4:3162459-3162478 None:intergenic 40.0%
TTGCACACAGGAATTGATGT+AGG + chr4_4:3162648-3162667 None:intergenic 40.0%
CCTAGATCATCATACGACTA+TGG + chr4_4:3163168-3163187 None:intergenic 40.0%
CCATAGTCGTATGATGATCT+AGG - chr4_4:3163165-3163184 Msa0664130:intron 40.0%
ATTTCGTTCTTTGTCTGGTG+AGG - chr4_4:3163226-3163245 Msa0664130:intron 40.0%
GGTCATGTTTGCAGTTCAAA+TGG - chr4_4:3163444-3163463 Msa0664130:CDS 40.0%
CATGTTTGCAGTTCAAATGG+AGG - chr4_4:3163447-3163466 Msa0664130:CDS 40.0%
TTGCAGTTCAAATGGAGGAA+TGG - chr4_4:3163452-3163471 Msa0664130:CDS 40.0%
AGTTCAAATGGAGGAATGGT+TGG - chr4_4:3163456-3163475 Msa0664130:CDS 40.0%
CATTTGGTATGCATAGGACA+TGG + chr4_4:3163527-3163546 None:intergenic 40.0%
CATGTCCTATGCATACCAAA+TGG - chr4_4:3163525-3163544 Msa0664130:CDS 40.0%
! TTGAACTCTCATGTGTCACT+AGG - chr4_4:3163581-3163600 Msa0664130:CDS 40.0%
TGGACATGGTTATCTACATG+TGG + chr4_4:3163692-3163711 None:intergenic 40.0%
!!! CCCACACACACTTGTTTTAT+AGG + chr4_4:3163822-3163841 None:intergenic 40.0%
! TTGGGAGATGCTATCTTTTG+TGG - chr4_4:3163852-3163871 Msa0664130:five_prime_UTR 40.0%
! AGCAACTTTAGTGGTGGTGA+CGG + chr4_4:3160541-3160560 None:intergenic 45.0%
!! GCTTTAGAAGGTATGGGAGA+TGG - chr4_4:3160597-3160616 Msa0664130:CDS 45.0%
AAACCACTCCTCTTTCGAGA+TGG - chr4_4:3160718-3160737 Msa0664130:intron 45.0%
TTTCCATCTCGAAAGAGGAG+TGG + chr4_4:3160724-3160743 None:intergenic 45.0%
ACTCCTCTTTCGAGATGGAA+AGG - chr4_4:3160723-3160742 Msa0664130:intron 45.0%
TTGTACAATACCGGCACATG+TGG - chr4_4:3161009-3161028 Msa0664130:intron 45.0%
!! ATCGTTTGGTGTGGCAGATT+TGG - chr4_4:3161245-3161264 Msa0664130:intron 45.0%
ACGGTTCCAACATTCCATTC+TGG + chr4_4:3161278-3161297 None:intergenic 45.0%
AGAATGGAATGTTGGAACCG+TGG - chr4_4:3161277-3161296 Msa0664130:intron 45.0%
GAAAGATGGGAACCAAGTGT+TGG - chr4_4:3161317-3161336 Msa0664130:intron 45.0%
CTGCGAAATATGCCAACACT+TGG + chr4_4:3161332-3161351 None:intergenic 45.0%
AGCTGTCAATCCTTCAGGAT+TGG + chr4_4:3161397-3161416 None:intergenic 45.0%
TAAGCAGCTGTCAATCCTTC+AGG + chr4_4:3161402-3161421 None:intergenic 45.0%
GAAGGATTGACAGCTGCTTA+TGG - chr4_4:3161402-3161421 Msa0664130:intron 45.0%
TGCTTATGGCAAGTGGTCTT+TGG - chr4_4:3161416-3161435 Msa0664130:intron 45.0%
!!! TGAACGCCAGGTTTTGGATA+AGG - chr4_4:3162101-3162120 Msa0664130:intron 45.0%
TCCTGTGTGCAAATAGGTTG+TGG - chr4_4:3162656-3162675 Msa0664130:CDS 45.0%
CCTGTGTGCAAATAGGTTGT+GGG - chr4_4:3162657-3162676 Msa0664130:CDS 45.0%
!! CTGATGCTAGTTCTGCTATC+AGG + chr4_4:3162940-3162959 None:intergenic 45.0%
ATCAGCAGCAGCTAGTGAAA+AGG - chr4_4:3162955-3162974 Msa0664130:intron 45.0%
TCAGCAGCAGCTAGTGAAAA+GGG - chr4_4:3162956-3162975 Msa0664130:intron 45.0%
TTTACCTCCTTAACTGCCGT+GGG + chr4_4:3163046-3163065 None:intergenic 45.0%
GATCATCATACGACTATGGC+AGG + chr4_4:3163164-3163183 None:intergenic 45.0%
!!! TTTTTGGTTAGGCTGCTACG+AGG + chr4_4:3163298-3163317 None:intergenic 45.0%
! AAGTGTGTGTGGGCTGATAT+TGG - chr4_4:3163829-3163848 Msa0664130:five_prime_UTR 45.0%
! TGTGTGGGCTGATATTGGTT+GGG - chr4_4:3163834-3163853 Msa0664130:five_prime_UTR 45.0%
!!! TTTAATTTTTATTATTTTGT+TGG - chr4_4:3161198-3161217 Msa0664130:intron 5.0%
!!! ATTAATAAAAACTTATTTTA+CGG - chr4_4:3161541-3161560 Msa0664130:intron 5.0%
! AAGCGCTGTTGCTGTAAGAG+TGG + chr4_4:3160475-3160494 None:intergenic 50.0%
ATTCAGAGTCTCTTCCGCCA+TGG - chr4_4:3160509-3160528 Msa0664130:three_prime_UTR 50.0%
CACCACCACTAAAGTTGCTC+CGG - chr4_4:3160542-3160561 Msa0664130:CDS 50.0%
GAACCGTGGCTTGAGAGTAA+AGG - chr4_4:3161291-3161310 Msa0664130:intron 50.0%
CTTGGAGAGTCCCCTATTGA+TGG - chr4_4:3161360-3161379 Msa0664130:intron 50.0%
TGACAGCTGCTTATGGCAAG+TGG - chr4_4:3161409-3161428 Msa0664130:intron 50.0%
CAAAACCTGGCGTTCAAGAC+GGG + chr4_4:3162097-3162116 None:intergenic 50.0%
CCAAAACCTGGCGTTCAAGA+CGG + chr4_4:3162098-3162117 None:intergenic 50.0%
!! AGGGGTTTCTGTTGGTGTTG+TGG - chr4_4:3162197-3162216 Msa0664130:intron 50.0%
CCCACAACCTATTTGCACAC+AGG + chr4_4:3162660-3162679 None:intergenic 50.0%
!! AGGTTGTGGGCTCTGACTTT+TGG - chr4_4:3162670-3162689 Msa0664130:CDS 50.0%
!! GGTTGTGGGCTCTGACTTTT+GGG - chr4_4:3162671-3162690 Msa0664130:CDS 50.0%
CAGCAGCAGCTAGTGAAAAG+GGG - chr4_4:3162957-3162976 Msa0664130:intron 50.0%
TGGGAAAGTGAGCAACAGCT+CGG + chr4_4:3163027-3163046 None:intergenic 50.0%
AGCTGTTGCTCACTTTCCCA+CGG - chr4_4:3163027-3163046 Msa0664130:intron 50.0%
TCACTTTCCCACGGCAGTTA+AGG - chr4_4:3163036-3163055 Msa0664130:intron 50.0%
CTTTACCTCCTTAACTGCCG+TGG + chr4_4:3163047-3163066 None:intergenic 50.0%
CGTTCTTTGTCTGGTGAGGT+AGG - chr4_4:3163230-3163249 Msa0664130:intron 50.0%
TCTTTGTCTGGTGAGGTAGG+TGG - chr4_4:3163233-3163252 Msa0664130:intron 50.0%
TCTGAGAAGGCTATTGCCCA+AGG - chr4_4:3163491-3163510 Msa0664130:CDS 50.0%
ACATGGATCCTGCTTGCCTT+GGG + chr4_4:3163510-3163529 None:intergenic 50.0%
! GTGTGTGGGCTGATATTGGT+TGG - chr4_4:3163833-3163852 Msa0664130:five_prime_UTR 50.0%
CGCTGTTGCTGTAAGAGTGG+AGG + chr4_4:3160472-3160491 None:intergenic 55.0%
TCTTCCACCGCCGACAATGA+CGG + chr4_4:3160568-3160587 None:intergenic 55.0%
ATTGTCGGCGGTGGAAGAGT+TGG - chr4_4:3160570-3160589 Msa0664130:CDS 55.0%
! CCGTCTTGAACGCCAGGTTT+TGG - chr4_4:3162095-3162114 Msa0664130:intron 55.0%
! ATGCTTGTTGGAGCGCGTCA+TGG - chr4_4:3162174-3162193 Msa0664130:intron 55.0%
TTGTTGGAGCGCGTCATGGA+GGG - chr4_4:3162178-3162197 Msa0664130:intron 55.0%
CGTCATGGAGGGGTTTCTGT+TGG - chr4_4:3162189-3162208 Msa0664130:intron 55.0%
CGCACACAAACGGTCTTCCA+TGG + chr4_4:3162999-3163018 None:intergenic 55.0%
! CTCGGGAGTACGCACACAAA+CGG + chr4_4:3163009-3163028 None:intergenic 55.0%
GGGAAAGTGAGCAACAGCTC+GGG + chr4_4:3163026-3163045 None:intergenic 55.0%
CTTTCCCACGGCAGTTAAGG+AGG - chr4_4:3163039-3163058 Msa0664130:intron 55.0%
GACATGGATCCTGCTTGCCT+TGG + chr4_4:3163511-3163530 None:intergenic 55.0%
! GGTGACGGTAGAAGCCATGG+CGG + chr4_4:3160526-3160545 None:intergenic 60.0%
!! GGTGGTGACGGTAGAAGCCA+TGG + chr4_4:3160529-3160548 None:intergenic 60.0%
GGCCGGAGCAACTTTAGTGG+TGG + chr4_4:3160547-3160566 None:intergenic 60.0%
GACGGCCGGAGCAACTTTAG+TGG + chr4_4:3160550-3160569 None:intergenic 60.0%
GTTGCTCCGGCCGTCATTGT+CGG - chr4_4:3160555-3160574 Msa0664130:CDS 60.0%
AGCTGGAGGCCTCTCTTGCA+AGG - chr4_4:3161458-3161477 Msa0664130:intron 60.0%
TCTGACCCGTCTTGAACGCC+AGG - chr4_4:3162089-3162108 Msa0664130:intron 60.0%
CTTGTTGGAGCGCGTCATGG+AGG - chr4_4:3162177-3162196 Msa0664130:intron 60.0%
TGTTGGAGCGCGTCATGGAG+GGG - chr4_4:3162179-3162198 Msa0664130:intron 60.0%
GTCTGGTGAGGTAGGTGGCT+AGG - chr4_4:3163238-3163257 Msa0664130:intron 60.0%
GGCTATTGCCCAAGGCAAGC+AGG - chr4_4:3163499-3163518 Msa0664130:CDS 60.0%
GCTCCGGCCGTCATTGTCGG+CGG - chr4_4:3160558-3160577 Msa0664130:CDS 70.0%
CCACCGCCGACAATGACGGC+CGG + chr4_4:3160564-3160583 None:intergenic 70.0%
CCGGCCGTCATTGTCGGCGG+TGG - chr4_4:3160561-3160580 Msa0664130:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 3160179 3163924 3160179 ID=Msa0664130;Name=Msa0664130
chr4_4 mRNA 3160179 3163924 3160179 ID=Msa0664130-mRNA-1;Parent=Msa0664130;Name=Msa0664130-mRNA-1;_AED=0.02;_eAED=0.02;_QI=265|1|1|1|1|1|5|353|297
chr4_4 exon 3160179 3160645 3160179 ID=Msa0664130-mRNA-1:exon:964;Parent=Msa0664130-mRNA-1
chr4_4 exon 3161043 3161174 3161043 ID=Msa0664130-mRNA-1:exon:963;Parent=Msa0664130-mRNA-1
chr4_4 exon 3161864 3161992 3161864 ID=Msa0664130-mRNA-1:exon:962;Parent=Msa0664130-mRNA-1
chr4_4 exon 3162624 3162841 3162624 ID=Msa0664130-mRNA-1:exon:961;Parent=Msa0664130-mRNA-1
chr4_4 exon 3163359 3163924 3163359 ID=Msa0664130-mRNA-1:exon:960;Parent=Msa0664130-mRNA-1
chr4_4 five_prime_UTR 3163660 3163924 3163660 ID=Msa0664130-mRNA-1:five_prime_utr;Parent=Msa0664130-mRNA-1
chr4_4 CDS 3163359 3163659 3163359 ID=Msa0664130-mRNA-1:cds;Parent=Msa0664130-mRNA-1
chr4_4 CDS 3162624 3162841 3162624 ID=Msa0664130-mRNA-1:cds;Parent=Msa0664130-mRNA-1
chr4_4 CDS 3161864 3161992 3161864 ID=Msa0664130-mRNA-1:cds;Parent=Msa0664130-mRNA-1
chr4_4 CDS 3161043 3161174 3161043 ID=Msa0664130-mRNA-1:cds;Parent=Msa0664130-mRNA-1
chr4_4 CDS 3160532 3160645 3160532 ID=Msa0664130-mRNA-1:cds;Parent=Msa0664130-mRNA-1
chr4_4 three_prime_UTR 3160179 3160531 3160179 ID=Msa0664130-mRNA-1:three_prime_utr;Parent=Msa0664130-mRNA-1
Gene Sequence

>Msa0664130

ATGTCTTTCTCTCTCTGTAGCTTTTCCTCCACTCTTACAGCAACAGCGCTTCCCAAGAATTTCAGATTCAGAGTCTCTTCCGCCATGGCTTCTACCGTCACCACCACTAAAGTTGCTCCGGCCGTCATTGTCGGCGGTGGAAGAGTTGGAAAAGCTTTAGAAGGTATGGGAGATGGTAAAGATCTTGTTGTGAAACGTGGTGATTCAATTCCCGTTGATTTTGAAGGTCCTATTTTGGTTTGTACTAGAAATGATGATCTTGATTCTGTTCTTCAAACCACTCCTCTTTCGAGATGGAAAGATTTGGTGTTTTTCCAGAATGGAATGTTGGAACCGTGGCTTGAGAGTAAAGGTTTGAAAGATGGGAACCAAGTGTTGGCATATTTCGCAGTGTCAAAACTTGGAGAGTCCCCTATTGATGGTAAGACTGATACCAATCCTGAAGGATTGACAGCTGCTTATGGCAAGTGGTCTTTGGCTGTTTCTGAAAGATTGAAAGCTGGAGGCCTCTCTTGCAAGGTTTTGGATAAGGAAGCATTTCAAAAGCAGATGTTAGAGAAGCTCATATGGATTTGTTCTGTCATGCTTGTTGGAGCGCGTCATGGAGGGGTTTCTGTTGGTGTTGTGGAAAAGGAATTCCACCTTGAATTATGTAGCCTGATAGCAGAACTAGCATCAGCAGCAGCTAGTGAAAAGGGGTTAAAGTTTGAAGAAGCCATGGAAGACCGTTTGTGTGCGTACTCCCGAGCTGTTGCTCACTTTCCCACGGCAGTTAAGGAGTTCAAATGGAGGAATGGTTGGTTTTTTGCTCTTTCTGAGAAGGCTATTGCCCAAGGCAAGCAGGATCCATGTCCTATGCATACCAAATGGCTTAAAGAGTTGAAAATTGTATAA

Protein sequence

>Msa0664130

MSFSLCSFSSTLTATALPKNFRFRVSSAMASTVTTTKVAPAVIVGGGRVGKALEGMGDGKDLVVKRGDSIPVDFEGPILVCTRNDDLDSVLQTTPLSRWKDLVFFQNGMLEPWLESKGLKDGNQVLAYFAVSKLGESPIDGKTDTNPEGLTAAYGKWSLAVSERLKAGGLSCKVLDKEAFQKQMLEKLIWICSVMLVGARHGGVSVGVVEKEFHLELCSLIAELASAAASEKGLKFEEAMEDRLCAYSRAVAHFPTAVKEFKWRNGWFFALSEKAIAQGKQDPCPMHTKWLKELKIV*