Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208620 | KEH31744.1 | 90.385 | 104 | 10 | 0 | 91 | 194 | 1 | 104 | 5.49e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208620 | sp|Q9FGS0|CP31B_ARATH | 48.765 | 162 | 78 | 3 | 52 | 211 | 114 | 272 | 1.59e-42 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208620 | A0A072UPH6 | 90.385 | 104 | 10 | 0 | 91 | 194 | 1 | 104 | 2.62e-63 | 201 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1208620 | Msa1208740 | 0.931094 | 6.274862e-94 | -8.615850e-47 |
| Msa1208620 | Msa1258930 | 0.958581 | 1.654197e-116 | -8.615850e-47 |
| Msa1208620 | Msa1418610 | 0.859866 | 3.074717e-63 | -8.615850e-47 |
| Msa1208620 | Msa1418620 | 0.857757 | 1.313366e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208620 | MtrunA17_Chr4g0058141 | 90.385 | 104 | 10 | 0 | 91 | 194 | 1 | 104 | 5.05e-67 | 201 |
| Msa1208620 | MtrunA17_Chr4g0058151 | 54.938 | 162 | 68 | 4 | 51 | 210 | 122 | 280 | 6.99e-48 | 159 |
| Msa1208620 | MtrunA17_Chr3g0116631 | 50.307 | 163 | 75 | 4 | 52 | 210 | 110 | 270 | 1.04e-44 | 151 |
| Msa1208620 | MtrunA17_Chr3g0087481 | 35.465 | 172 | 100 | 4 | 50 | 211 | 59 | 229 | 5.86e-21 | 87.8 |
| Msa1208620 | MtrunA17_Chr1g0177101 | 30.539 | 167 | 102 | 5 | 52 | 209 | 109 | 270 | 1.19e-18 | 82.8 |
| Msa1208620 | MtrunA17_Chr7g0267571 | 30.539 | 167 | 106 | 5 | 52 | 209 | 110 | 275 | 3.05e-16 | 76.3 |
| Msa1208620 | MtrunA17_Chr1g0181111 | 35.227 | 176 | 95 | 4 | 52 | 209 | 85 | 259 | 1.82e-15 | 73.6 |
| Msa1208620 | MtrunA17_Chr1g0168601 | 32.759 | 116 | 72 | 2 | 92 | 207 | 105 | 214 | 2.23e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208620 | AT5G50250.1 | 48.765 | 162 | 78 | 3 | 52 | 211 | 114 | 272 | 1.61e-43 | 148 |
| Msa1208620 | AT4G24770.1 | 48.148 | 162 | 79 | 3 | 52 | 211 | 151 | 309 | 1.08e-40 | 142 |
| Msa1208620 | AT4G24770.2 | 48.148 | 162 | 79 | 3 | 52 | 211 | 151 | 309 | 1.08e-40 | 142 |
| Msa1208620 | AT2G37220.1 | 39.130 | 184 | 80 | 4 | 51 | 209 | 91 | 267 | 2.07e-25 | 100 |
| Msa1208620 | AT3G52150.2 | 34.483 | 203 | 113 | 8 | 21 | 211 | 53 | 247 | 7.55e-20 | 85.5 |
| Msa1208620 | AT3G52150.1 | 34.483 | 203 | 113 | 8 | 21 | 211 | 53 | 247 | 7.55e-20 | 85.5 |
| Msa1208620 | AT3G52380.1 | 29.885 | 174 | 98 | 5 | 52 | 209 | 117 | 282 | 4.86e-19 | 84.3 |
| Msa1208620 | AT2G35410.1 | 32.934 | 167 | 103 | 5 | 52 | 211 | 96 | 260 | 2.06e-18 | 82.4 |
| Msa1208620 | AT1G60000.1 | 31.875 | 160 | 102 | 4 | 52 | 209 | 86 | 240 | 1.85e-12 | 65.1 |
Find 60 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATAGCATTTGAAATAAT+AGG | 0.207293 | 8_1:+66798919 | None:intergenic |
| TCAAATGCGCGTGGCCGTTT+TGG | 0.211966 | 8_1:+66798139 | None:intergenic |
| TGAGTAACATAGACACTAAA+AGG | 0.317271 | 8_1:+66798112 | None:intergenic |
| ATGGCGGGTTCTTCTCCTTC+TGG | 0.342108 | 8_1:+66798822 | None:intergenic |
| TTCTTCTCTTCTCACATTTG+CGG | 0.355015 | 8_1:-66798800 | Msa1208620:CDS |
| TTGGTGTGCAAGAGTGAATT+AGG | 0.356166 | 8_1:+66798952 | None:intergenic |
| AATAATAGGGAATGTGGTTT+TGG | 0.357319 | 8_1:+66798933 | None:intergenic |
| TAATAGCATTTGAAATAATA+GGG | 0.362798 | 8_1:+66798920 | None:intergenic |
| CTAGCATTGTCTTGTGGATA+AGG | 0.388661 | 8_1:+66799102 | None:intergenic |
| TGGACACAATACGAAATGTT+TGG | 0.388770 | 8_1:-66798353 | Msa1208620:CDS |
| AATGTCATTGCTGCTCTTCA+CGG | 0.407509 | 8_1:-66797938 | Msa1208620:CDS |
| CATCATATGATAATTCTTCA+AGG | 0.413977 | 8_1:-66798870 | Msa1208620:CDS |
| AAATTTCTTGACTGTTAGTA+AGG | 0.416600 | 8_1:-66798191 | Msa1208620:CDS |
| TCAGGTCGATCACAGGGTTA+TGG | 0.424167 | 8_1:-66797995 | Msa1208620:CDS |
| GATTTCAGGTAATTTATACT+TGG | 0.431344 | 8_1:-66798373 | Msa1208620:intron |
| TCTCTTCTCACATTTGCGGT+TGG | 0.448348 | 8_1:-66798796 | Msa1208620:CDS |
| GAAGAATTATCATATGATGA+AGG | 0.452268 | 8_1:+66798874 | None:intergenic |
| CATTGCTGCTCTTCACGGTC+AGG | 0.452683 | 8_1:-66797933 | Msa1208620:intron |
| TTCTTCTGAAGATTTACGTT+GGG | 0.466529 | 8_1:-66798761 | Msa1208620:CDS |
| TTAATCTGTAACAAAGTCTC+AGG | 0.469763 | 8_1:-66798013 | Msa1208620:CDS |
| GAAAGGAACACCACAACACT+AGG | 0.478587 | 8_1:+66799049 | None:intergenic |
| ATTATTCAGCAAACATGGTA+AGG | 0.486096 | 8_1:-66798050 | Msa1208620:CDS |
| ACATTTGCGGTTGGTGATGT+TGG | 0.499859 | 8_1:-66798787 | Msa1208620:CDS |
| GAGAAGGATGAGAAGGAGAA+AGG | 0.504406 | 8_1:+66799032 | None:intergenic |
| AAGAATTATCATATGATGAA+GGG | 0.504905 | 8_1:+66798875 | None:intergenic |
| AACTTCTTCAACGGTACTCA+TGG | 0.505528 | 8_1:+66798322 | None:intergenic |
| ATGTTGAGAGAAGGATGAGA+AGG | 0.505906 | 8_1:+66799025 | None:intergenic |
| CACTACCTGATCTCCCAAAA+CGG | 0.511369 | 8_1:-66798153 | Msa1208620:CDS |
| ATTTGAAATAATAGGGAATG+TGG | 0.513634 | 8_1:+66798927 | None:intergenic |
| CAAAGTCTCAGGTCGATCAC+AGG | 0.513736 | 8_1:-66798002 | Msa1208620:CDS |
| ATCATGTCTATCACAATGAC+AGG | 0.526571 | 8_1:-66798994 | Msa1208620:five_prime_UTR |
| GACTCAAGATACCGATGTTG+AGG | 0.546964 | 8_1:-66798733 | Msa1208620:CDS |
| CGCTCTCTCTCACCGCCAGA+AGG | 0.551040 | 8_1:-66798837 | Msa1208620:CDS |
| CTAATACTAGCATTGTCTTG+TGG | 0.551172 | 8_1:+66799096 | None:intergenic |
| TAACTCAACAACTCCCATGC+TGG | 0.551304 | 8_1:+66797520 | None:intergenic |
| ATTCTTCTGAAGATTTACGT+TGG | 0.551307 | 8_1:-66798762 | Msa1208620:CDS |
| GAACACCACAACACTAGGGT+TGG | 0.551757 | 8_1:+66799054 | None:intergenic |
| AGCCTTCTCAACTTCTTCAA+CGG | 0.556305 | 8_1:+66798313 | None:intergenic |
| TTTGTGTGACAGGAATTAGC+TGG | 0.556926 | 8_1:-66798214 | Msa1208620:intron |
| AAGGCTATGAAGAAGTTCAA+TGG | 0.566594 | 8_1:-66798296 | Msa1208620:CDS |
| AATTGAATTGATTAAACACG+TGG | 0.578559 | 8_1:+66799151 | None:intergenic |
| AAAGGGGCATACACCAGCAT+GGG | 0.579969 | 8_1:-66797533 | Msa1208620:CDS |
| GAGCAATTATTCAGCAAACA+TGG | 0.587655 | 8_1:-66798055 | Msa1208620:CDS |
| TACCGTTGAAGAAGTTGAGA+AGG | 0.595905 | 8_1:-66798315 | Msa1208620:CDS |
| TCTGGCGGTGAGAGAGAGCG+AGG | 0.599566 | 8_1:+66798840 | None:intergenic |
| TGTTGAGAGTAATGAACACT+TGG | 0.600502 | 8_1:-66798077 | Msa1208620:CDS |
| TGTGAGAAGAGAAGAATGGC+GGG | 0.607125 | 8_1:+66798807 | None:intergenic |
| GCGGGTTCTTCTCCTTCTGG+CGG | 0.609161 | 8_1:+66798825 | None:intergenic |
| AAAGTCTCAGGTCGATCACA+GGG | 0.610446 | 8_1:-66798001 | Msa1208620:CDS |
| GAAAGGGGCATACACCAGCA+TGG | 0.612791 | 8_1:-66797534 | Msa1208620:CDS |
| CAAATGTGAGAAGAGAAGAA+TGG | 0.634541 | 8_1:+66798803 | None:intergenic |
| CAAATCCAACCCTAGTGTTG+TGG | 0.661373 | 8_1:-66799059 | Msa1208620:five_prime_UTR |
| CTGGCGGTGAGAGAGAGCGA+GGG | 0.661739 | 8_1:+66798841 | None:intergenic |
| TATAGCTGAATGTTGAGAGA+AGG | 0.662316 | 8_1:+66799016 | None:intergenic |
| AAAGGAACACCACAACACTA+GGG | 0.662871 | 8_1:+66799050 | None:intergenic |
| TCTATGTTACTCAGTTGCCA+CGG | 0.664591 | 8_1:-66798102 | Msa1208620:CDS |
| ATGTGAGAAGAGAAGAATGG+CGG | 0.670632 | 8_1:+66798806 | None:intergenic |
| AAAGGAGAATCAAATGCGCG+TGG | 0.672402 | 8_1:+66798130 | None:intergenic |
| TCATTACTCTCAACACTCCG+TGG | 0.683276 | 8_1:+66798085 | None:intergenic |
| TGGGACTGTAGTGCATGCTG+AGG | 0.704678 | 8_1:-66798685 | Msa1208620:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAATAAAAAAAGTTA+AGG | + | chr8_1:66797884-66797903 | None:intergenic | 10.0% |
| !! | TAATGAAATAAAAAAAGTTA+AGG | + | chr8_1:66797884-66797903 | None:intergenic | 10.0% |
| !!! | TAATAGCATTTGAAATAATA+GGG | + | chr8_1:66797618-66797637 | None:intergenic | 15.0% |
| !!! | TTAATAGCATTTGAAATAAT+AGG | + | chr8_1:66797619-66797638 | None:intergenic | 15.0% |
| !!! | AGATTATGTGTAATATATTT+TGG | - | chr8_1:66797907-66797926 | Msa1208620:intron | 15.0% |
| !!! | TTAACTTTTTTCATTTTCAA+TGG | + | chr8_1:66798093-66798112 | None:intergenic | 15.0% |
| !! | ATTAATTTCTTACTTATCAT+TGG | - | chr8_1:66798674-66798693 | Msa1208620:intron | 15.0% |
| !! | TTATTGTAAGGAATTAAAAA+AGG | - | chr8_1:66798803-66798822 | Msa1208620:CDS | 15.0% |
| !!! | AAGACAAATTTTCTTTTAAA+AGG | + | chr8_1:66798875-66798894 | None:intergenic | 15.0% |
| !!! | TTTTTTATATTAATGCAGAA+AGG | - | chr8_1:66798984-66799003 | Msa1208620:five_prime_UTR | 15.0% |
| !!! | TTTTTATATTAATGCAGAAA+GGG | - | chr8_1:66798985-66799004 | Msa1208620:five_prime_UTR | 15.0% |
| !!! | TAATAGCATTTGAAATAATA+GGG | + | chr8_1:66797618-66797637 | None:intergenic | 15.0% |
| !!! | TTAATAGCATTTGAAATAAT+AGG | + | chr8_1:66797619-66797638 | None:intergenic | 15.0% |
| !!! | AGATTATGTGTAATATATTT+TGG | - | chr8_1:66797907-66797926 | Msa1208620:intron | 15.0% |
| !!! | TTAACTTTTTTCATTTTCAA+TGG | + | chr8_1:66798093-66798112 | None:intergenic | 15.0% |
| !! | ATTAATTTCTTACTTATCAT+TGG | - | chr8_1:66798674-66798693 | Msa1208620:intron | 15.0% |
| !! | TTATTGTAAGGAATTAAAAA+AGG | - | chr8_1:66798803-66798822 | Msa1208620:CDS | 15.0% |
| !!! | AAGACAAATTTTCTTTTAAA+AGG | + | chr8_1:66798875-66798894 | None:intergenic | 15.0% |
| !!! | TTTTTTATATTAATGCAGAA+AGG | - | chr8_1:66798984-66799003 | Msa1208620:five_prime_UTR | 15.0% |
| !!! | TTTTTATATTAATGCAGAAA+GGG | - | chr8_1:66798985-66799004 | Msa1208620:five_prime_UTR | 15.0% |
| !! | AAGAATTATCATATGATGAA+GGG | + | chr8_1:66797663-66797682 | None:intergenic | 20.0% |
| !!! | TAGACTTAACCATTTTATTA+GGG | + | chr8_1:66798035-66798054 | None:intergenic | 20.0% |
| !!! | ATAGACTTAACCATTTTATT+AGG | + | chr8_1:66798036-66798055 | None:intergenic | 20.0% |
| !!! | TACCTGAAATCATTTTATTA+GGG | + | chr8_1:66798153-66798172 | None:intergenic | 20.0% |
| !!! | TTACCTGAAATCATTTTATT+AGG | + | chr8_1:66798154-66798173 | None:intergenic | 20.0% |
| !! | TACACTACAAAAATATAAAC+AGG | + | chr8_1:66798278-66798297 | None:intergenic | 20.0% |
| !!! | TTTTATATTAATGCAGAAAG+GGG | - | chr8_1:66798986-66799005 | Msa1208620:five_prime_UTR | 20.0% |
| !! | TGATATAAAAATTGAGCAAA+AGG | + | chr8_1:66799110-66799129 | None:intergenic | 20.0% |
| !! | AAGAATTATCATATGATGAA+GGG | + | chr8_1:66797663-66797682 | None:intergenic | 20.0% |
| !!! | TAGACTTAACCATTTTATTA+GGG | + | chr8_1:66798035-66798054 | None:intergenic | 20.0% |
| !!! | ATAGACTTAACCATTTTATT+AGG | + | chr8_1:66798036-66798055 | None:intergenic | 20.0% |
| !!! | TACCTGAAATCATTTTATTA+GGG | + | chr8_1:66798153-66798172 | None:intergenic | 20.0% |
| !!! | TTACCTGAAATCATTTTATT+AGG | + | chr8_1:66798154-66798173 | None:intergenic | 20.0% |
| !! | TACACTACAAAAATATAAAC+AGG | + | chr8_1:66798278-66798297 | None:intergenic | 20.0% |
| !!! | TTTTATATTAATGCAGAAAG+GGG | - | chr8_1:66798986-66799005 | Msa1208620:five_prime_UTR | 20.0% |
| !! | TGATATAAAAATTGAGCAAA+AGG | + | chr8_1:66799110-66799129 | None:intergenic | 20.0% |
| !! | ATTTGAAATAATAGGGAATG+TGG | + | chr8_1:66797611-66797630 | None:intergenic | 25.0% |
| ! | GAAGAATTATCATATGATGA+AGG | + | chr8_1:66797664-66797683 | None:intergenic | 25.0% |
| ! | CATCATATGATAATTCTTCA+AGG | - | chr8_1:66797665-66797684 | Msa1208620:intron | 25.0% |
| !!! | AGGAATTGAAAACACTTTTT+GGG | - | chr8_1:66797822-66797841 | Msa1208620:intron | 25.0% |
| ! | ATATGCATTCCCTAATAAAA+TGG | - | chr8_1:66798023-66798042 | Msa1208620:CDS | 25.0% |
| ! | ATGGTCAAATTTATTTGTCA+TGG | + | chr8_1:66798074-66798093 | None:intergenic | 25.0% |
| ! | TTCCCTAATAAAATGATTTC+AGG | - | chr8_1:66798148-66798167 | Msa1208620:CDS | 25.0% |
| !! | GATTTCAGGTAATTTATACT+TGG | - | chr8_1:66798162-66798181 | Msa1208620:CDS | 25.0% |
| !! | TTTTTGTAGTGTAGTTGTTT+AGG | - | chr8_1:66798285-66798304 | Msa1208620:intron | 25.0% |
| ! | AAATTTCTTGACTGTTAGTA+AGG | - | chr8_1:66798344-66798363 | Msa1208620:CDS | 25.0% |
| !! | ATTGGTAACATAACATGTAT+TGG | - | chr8_1:66798692-66798711 | Msa1208620:CDS | 25.0% |
| !!! | TTTTTTGAGAATAACGATGT+TGG | - | chr8_1:66798767-66798786 | Msa1208620:CDS | 25.0% |
| ! | TGATTCAAATTTAGTAGTAC+TGG | + | chr8_1:66798937-66798956 | None:intergenic | 25.0% |
| !! | ATTTGAAATAATAGGGAATG+TGG | + | chr8_1:66797611-66797630 | None:intergenic | 25.0% |
| ! | GAAGAATTATCATATGATGA+AGG | + | chr8_1:66797664-66797683 | None:intergenic | 25.0% |
| ! | CATCATATGATAATTCTTCA+AGG | - | chr8_1:66797665-66797684 | Msa1208620:intron | 25.0% |
| !!! | AGGAATTGAAAACACTTTTT+GGG | - | chr8_1:66797822-66797841 | Msa1208620:intron | 25.0% |
| ! | ATATGCATTCCCTAATAAAA+TGG | - | chr8_1:66798023-66798042 | Msa1208620:CDS | 25.0% |
| ! | ATGGTCAAATTTATTTGTCA+TGG | + | chr8_1:66798074-66798093 | None:intergenic | 25.0% |
| ! | TTCCCTAATAAAATGATTTC+AGG | - | chr8_1:66798148-66798167 | Msa1208620:CDS | 25.0% |
| !! | GATTTCAGGTAATTTATACT+TGG | - | chr8_1:66798162-66798181 | Msa1208620:CDS | 25.0% |
| !! | TTTTTGTAGTGTAGTTGTTT+AGG | - | chr8_1:66798285-66798304 | Msa1208620:intron | 25.0% |
| ! | AAATTTCTTGACTGTTAGTA+AGG | - | chr8_1:66798344-66798363 | Msa1208620:CDS | 25.0% |
| !! | ATTGGTAACATAACATGTAT+TGG | - | chr8_1:66798692-66798711 | Msa1208620:CDS | 25.0% |
| !!! | TTTTTTGAGAATAACGATGT+TGG | - | chr8_1:66798767-66798786 | Msa1208620:CDS | 25.0% |
| ! | TGATTCAAATTTAGTAGTAC+TGG | + | chr8_1:66798937-66798956 | None:intergenic | 25.0% |
| ! | AATAATAGGGAATGTGGTTT+TGG | + | chr8_1:66797605-66797624 | None:intergenic | 30.0% |
| ! | ATTCTTCTGAAGATTTACGT+TGG | - | chr8_1:66797773-66797792 | Msa1208620:intron | 30.0% |
| ! | TTCTTCTGAAGATTTACGTT+GGG | - | chr8_1:66797774-66797793 | Msa1208620:intron | 30.0% |
| ! | TGTTTTCAATTCCTCAACAT+CGG | + | chr8_1:66797816-66797835 | None:intergenic | 30.0% |
| ! | GAGGAATTGAAAACACTTTT+TGG | - | chr8_1:66797821-66797840 | Msa1208620:intron | 30.0% |
| ! | CTTTTGCTTATAGTTTAGTC+AGG | + | chr8_1:66797956-66797975 | None:intergenic | 30.0% |
| TGAGTAACATAGACACTAAA+AGG | + | chr8_1:66798426-66798445 | None:intergenic | 30.0% | |
| ATTATTCAGCAAACATGGTA+AGG | - | chr8_1:66798485-66798504 | Msa1208620:intron | 30.0% | |
| TTAATCTGTAACAAAGTCTC+AGG | - | chr8_1:66798522-66798541 | Msa1208620:intron | 30.0% | |
| ATAGCTAGAGACTTATTGTA+AGG | - | chr8_1:66798791-66798810 | Msa1208620:CDS | 30.0% | |
| !! | TAGTACTGGTATTACCATAA+GGG | + | chr8_1:66798923-66798942 | None:intergenic | 30.0% |
| ! | AATAATAGGGAATGTGGTTT+TGG | + | chr8_1:66797605-66797624 | None:intergenic | 30.0% |
| ! | ATTCTTCTGAAGATTTACGT+TGG | - | chr8_1:66797773-66797792 | Msa1208620:intron | 30.0% |
| ! | TTCTTCTGAAGATTTACGTT+GGG | - | chr8_1:66797774-66797793 | Msa1208620:intron | 30.0% |
| ! | TGTTTTCAATTCCTCAACAT+CGG | + | chr8_1:66797816-66797835 | None:intergenic | 30.0% |
| ! | GAGGAATTGAAAACACTTTT+TGG | - | chr8_1:66797821-66797840 | Msa1208620:intron | 30.0% |
| ! | CTTTTGCTTATAGTTTAGTC+AGG | + | chr8_1:66797956-66797975 | None:intergenic | 30.0% |
| TGAGTAACATAGACACTAAA+AGG | + | chr8_1:66798426-66798445 | None:intergenic | 30.0% | |
| ATTATTCAGCAAACATGGTA+AGG | - | chr8_1:66798485-66798504 | Msa1208620:intron | 30.0% | |
| TTAATCTGTAACAAAGTCTC+AGG | - | chr8_1:66798522-66798541 | Msa1208620:intron | 30.0% | |
| ATAGCTAGAGACTTATTGTA+AGG | - | chr8_1:66798791-66798810 | Msa1208620:CDS | 30.0% | |
| !! | TAGTACTGGTATTACCATAA+GGG | + | chr8_1:66798923-66798942 | None:intergenic | 30.0% |
| CTAATACTAGCATTGTCTTG+TGG | + | chr8_1:66797442-66797461 | None:intergenic | 35.0% | |
| TATAGCTGAATGTTGAGAGA+AGG | + | chr8_1:66797522-66797541 | None:intergenic | 35.0% | |
| ATCATGTCTATCACAATGAC+AGG | - | chr8_1:66797541-66797560 | Msa1208620:intron | 35.0% | |
| CAAATGTGAGAAGAGAAGAA+TGG | + | chr8_1:66797735-66797754 | None:intergenic | 35.0% | |
| TTCTTCTCTTCTCACATTTG+CGG | - | chr8_1:66797735-66797754 | Msa1208620:intron | 35.0% | |
| !! | ATTGAAAACACTTTTTGGGC+AGG | - | chr8_1:66797826-66797845 | Msa1208620:intron | 35.0% |
| ! | ACGCAGTACAAAATGTTTTC+AGG | - | chr8_1:66798121-66798140 | Msa1208620:CDS | 35.0% |
| TGGACACAATACGAAATGTT+TGG | - | chr8_1:66798182-66798201 | Msa1208620:CDS | 35.0% | |
| AAGGCTATGAAGAAGTTCAA+TGG | - | chr8_1:66798239-66798258 | Msa1208620:intron | 35.0% | |
| TAATTCATCCTTTGTGTGAC+AGG | - | chr8_1:66798311-66798330 | Msa1208620:CDS | 35.0% | |
| TGTTGAGAGTAATGAACACT+TGG | - | chr8_1:66798458-66798477 | Msa1208620:intron | 35.0% | |
| GAGCAATTATTCAGCAAACA+TGG | - | chr8_1:66798480-66798499 | Msa1208620:intron | 35.0% | |
| !! | GTAGTACTGGTATTACCATA+AGG | + | chr8_1:66798924-66798943 | None:intergenic | 35.0% |
| CTAATACTAGCATTGTCTTG+TGG | + | chr8_1:66797442-66797461 | None:intergenic | 35.0% | |
| TATAGCTGAATGTTGAGAGA+AGG | + | chr8_1:66797522-66797541 | None:intergenic | 35.0% | |
| ATCATGTCTATCACAATGAC+AGG | - | chr8_1:66797541-66797560 | Msa1208620:intron | 35.0% | |
| CAAATGTGAGAAGAGAAGAA+TGG | + | chr8_1:66797735-66797754 | None:intergenic | 35.0% | |
| TTCTTCTCTTCTCACATTTG+CGG | - | chr8_1:66797735-66797754 | Msa1208620:intron | 35.0% | |
| !! | ATTGAAAACACTTTTTGGGC+AGG | - | chr8_1:66797826-66797845 | Msa1208620:intron | 35.0% |
| ! | ACGCAGTACAAAATGTTTTC+AGG | - | chr8_1:66798121-66798140 | Msa1208620:CDS | 35.0% |
| TGGACACAATACGAAATGTT+TGG | - | chr8_1:66798182-66798201 | Msa1208620:CDS | 35.0% | |
| AAGGCTATGAAGAAGTTCAA+TGG | - | chr8_1:66798239-66798258 | Msa1208620:intron | 35.0% | |
| TAATTCATCCTTTGTGTGAC+AGG | - | chr8_1:66798311-66798330 | Msa1208620:CDS | 35.0% | |
| TGTTGAGAGTAATGAACACT+TGG | - | chr8_1:66798458-66798477 | Msa1208620:intron | 35.0% | |
| GAGCAATTATTCAGCAAACA+TGG | - | chr8_1:66798480-66798499 | Msa1208620:intron | 35.0% | |
| !! | GTAGTACTGGTATTACCATA+AGG | + | chr8_1:66798924-66798943 | None:intergenic | 35.0% |
| CTAGCATTGTCTTGTGGATA+AGG | + | chr8_1:66797436-66797455 | None:intergenic | 40.0% | |
| AAAGGAACACCACAACACTA+GGG | + | chr8_1:66797488-66797507 | None:intergenic | 40.0% | |
| ATGTTGAGAGAAGGATGAGA+AGG | + | chr8_1:66797513-66797532 | None:intergenic | 40.0% | |
| TTGGTGTGCAAGAGTGAATT+AGG | + | chr8_1:66797586-66797605 | None:intergenic | 40.0% | |
| ATGTGAGAAGAGAAGAATGG+CGG | + | chr8_1:66797732-66797751 | None:intergenic | 40.0% | |
| AACTTCTTCAACGGTACTCA+TGG | + | chr8_1:66798216-66798235 | None:intergenic | 40.0% | |
| TACCGTTGAAGAAGTTGAGA+AGG | - | chr8_1:66798220-66798239 | Msa1208620:intron | 40.0% | |
| AGCCTTCTCAACTTCTTCAA+CGG | + | chr8_1:66798225-66798244 | None:intergenic | 40.0% | |
| AGCTAATTCCTGTCACACAA+AGG | + | chr8_1:66798322-66798341 | None:intergenic | 40.0% | |
| TTTGTGTGACAGGAATTAGC+TGG | - | chr8_1:66798321-66798340 | Msa1208620:CDS | 40.0% | |
| TCTATGTTACTCAGTTGCCA+CGG | - | chr8_1:66798433-66798452 | Msa1208620:intron | 40.0% | |
| AATGTCATTGCTGCTCTTCA+CGG | - | chr8_1:66798597-66798616 | Msa1208620:intron | 40.0% | |
| CTTCACGGTCAGGTAAATAT+TGG | - | chr8_1:66798612-66798631 | Msa1208620:intron | 40.0% | |
| TGTTGTTAGCATGACCCTTA+TGG | - | chr8_1:66798906-66798925 | Msa1208620:CDS | 40.0% | |
| CTAGCATTGTCTTGTGGATA+AGG | + | chr8_1:66797436-66797455 | None:intergenic | 40.0% | |
| AAAGGAACACCACAACACTA+GGG | + | chr8_1:66797488-66797507 | None:intergenic | 40.0% | |
| ATGTTGAGAGAAGGATGAGA+AGG | + | chr8_1:66797513-66797532 | None:intergenic | 40.0% | |
| TTGGTGTGCAAGAGTGAATT+AGG | + | chr8_1:66797586-66797605 | None:intergenic | 40.0% | |
| ATGTGAGAAGAGAAGAATGG+CGG | + | chr8_1:66797732-66797751 | None:intergenic | 40.0% | |
| AACTTCTTCAACGGTACTCA+TGG | + | chr8_1:66798216-66798235 | None:intergenic | 40.0% | |
| TACCGTTGAAGAAGTTGAGA+AGG | - | chr8_1:66798220-66798239 | Msa1208620:intron | 40.0% | |
| AGCCTTCTCAACTTCTTCAA+CGG | + | chr8_1:66798225-66798244 | None:intergenic | 40.0% | |
| AGCTAATTCCTGTCACACAA+AGG | + | chr8_1:66798322-66798341 | None:intergenic | 40.0% | |
| TTTGTGTGACAGGAATTAGC+TGG | - | chr8_1:66798321-66798340 | Msa1208620:CDS | 40.0% | |
| TCTATGTTACTCAGTTGCCA+CGG | - | chr8_1:66798433-66798452 | Msa1208620:intron | 40.0% | |
| AATGTCATTGCTGCTCTTCA+CGG | - | chr8_1:66798597-66798616 | Msa1208620:intron | 40.0% | |
| CTTCACGGTCAGGTAAATAT+TGG | - | chr8_1:66798612-66798631 | Msa1208620:intron | 40.0% | |
| TGTTGTTAGCATGACCCTTA+TGG | - | chr8_1:66798906-66798925 | Msa1208620:CDS | 40.0% | |
| CAAATCCAACCCTAGTGTTG+TGG | - | chr8_1:66797476-66797495 | Msa1208620:three_prime_UTR | 45.0% | |
| GAAAGGAACACCACAACACT+AGG | + | chr8_1:66797489-66797508 | None:intergenic | 45.0% | |
| GAGAAGGATGAGAAGGAGAA+AGG | + | chr8_1:66797506-66797525 | None:intergenic | 45.0% | |
| !! | GGGTTTTGTAGCTGCTTGAA+AGG | + | chr8_1:66797643-66797662 | None:intergenic | 45.0% |
| TGTGAGAAGAGAAGAATGGC+GGG | + | chr8_1:66797731-66797750 | None:intergenic | 45.0% | |
| TCTCTTCTCACATTTGCGGT+TGG | - | chr8_1:66797739-66797758 | Msa1208620:intron | 45.0% | |
| !! | ACATTTGCGGTTGGTGATGT+TGG | - | chr8_1:66797748-66797767 | Msa1208620:intron | 45.0% |
| GACTCAAGATACCGATGTTG+AGG | - | chr8_1:66797802-66797821 | Msa1208620:intron | 45.0% | |
| !! | AAAACACTTTTTGGGCAGGC+TGG | - | chr8_1:66797830-66797849 | Msa1208620:intron | 45.0% |
| !! | AAACACTTTTTGGGCAGGCT+GGG | - | chr8_1:66797831-66797850 | Msa1208620:intron | 45.0% |
| CACTACCTGATCTCCCAAAA+CGG | - | chr8_1:66798382-66798401 | Msa1208620:intron | 45.0% | |
| AAAGGAGAATCAAATGCGCG+TGG | + | chr8_1:66798408-66798427 | None:intergenic | 45.0% | |
| TCATTACTCTCAACACTCCG+TGG | + | chr8_1:66798453-66798472 | None:intergenic | 45.0% | |
| AAAGTCTCAGGTCGATCACA+GGG | - | chr8_1:66798534-66798553 | Msa1208620:intron | 45.0% | |
| TAACTCAACAACTCCCATGC+TGG | + | chr8_1:66799018-66799037 | None:intergenic | 45.0% | |
| CAAATCCAACCCTAGTGTTG+TGG | - | chr8_1:66797476-66797495 | Msa1208620:three_prime_UTR | 45.0% | |
| GAAAGGAACACCACAACACT+AGG | + | chr8_1:66797489-66797508 | None:intergenic | 45.0% | |
| GAGAAGGATGAGAAGGAGAA+AGG | + | chr8_1:66797506-66797525 | None:intergenic | 45.0% | |
| !! | GGGTTTTGTAGCTGCTTGAA+AGG | + | chr8_1:66797643-66797662 | None:intergenic | 45.0% |
| TGTGAGAAGAGAAGAATGGC+GGG | + | chr8_1:66797731-66797750 | None:intergenic | 45.0% | |
| TCTCTTCTCACATTTGCGGT+TGG | - | chr8_1:66797739-66797758 | Msa1208620:intron | 45.0% | |
| !! | ACATTTGCGGTTGGTGATGT+TGG | - | chr8_1:66797748-66797767 | Msa1208620:intron | 45.0% |
| GACTCAAGATACCGATGTTG+AGG | - | chr8_1:66797802-66797821 | Msa1208620:intron | 45.0% | |
| !! | AAAACACTTTTTGGGCAGGC+TGG | - | chr8_1:66797830-66797849 | Msa1208620:intron | 45.0% |
| !! | AAACACTTTTTGGGCAGGCT+GGG | - | chr8_1:66797831-66797850 | Msa1208620:intron | 45.0% |
| CACTACCTGATCTCCCAAAA+CGG | - | chr8_1:66798382-66798401 | Msa1208620:intron | 45.0% | |
| AAAGGAGAATCAAATGCGCG+TGG | + | chr8_1:66798408-66798427 | None:intergenic | 45.0% | |
| TCATTACTCTCAACACTCCG+TGG | + | chr8_1:66798453-66798472 | None:intergenic | 45.0% | |
| AAAGTCTCAGGTCGATCACA+GGG | - | chr8_1:66798534-66798553 | Msa1208620:intron | 45.0% | |
| TAACTCAACAACTCCCATGC+TGG | + | chr8_1:66799018-66799037 | None:intergenic | 45.0% | |
| GAACACCACAACACTAGGGT+TGG | + | chr8_1:66797484-66797503 | None:intergenic | 50.0% | |
| CAAAGTCTCAGGTCGATCAC+AGG | - | chr8_1:66798533-66798552 | Msa1208620:intron | 50.0% | |
| TCAGGTCGATCACAGGGTTA+TGG | - | chr8_1:66798540-66798559 | Msa1208620:intron | 50.0% | |
| ! | AAAGGGGCATACACCAGCAT+GGG | - | chr8_1:66799002-66799021 | Msa1208620:five_prime_UTR | 50.0% |
| GAACACCACAACACTAGGGT+TGG | + | chr8_1:66797484-66797503 | None:intergenic | 50.0% | |
| CAAAGTCTCAGGTCGATCAC+AGG | - | chr8_1:66798533-66798552 | Msa1208620:intron | 50.0% | |
| TCAGGTCGATCACAGGGTTA+TGG | - | chr8_1:66798540-66798559 | Msa1208620:intron | 50.0% | |
| ! | AAAGGGGCATACACCAGCAT+GGG | - | chr8_1:66799002-66799021 | Msa1208620:five_prime_UTR | 50.0% |
| !! | ATGGCGGGTTCTTCTCCTTC+TGG | + | chr8_1:66797716-66797735 | None:intergenic | 55.0% |
| TGGGACTGTAGTGCATGCTG+AGG | - | chr8_1:66797850-66797869 | Msa1208620:intron | 55.0% | |
| !! | CAAATGCGCGTGGCCGTTTT+GGG | + | chr8_1:66798398-66798417 | None:intergenic | 55.0% |
| ! | TCAAATGCGCGTGGCCGTTT+TGG | + | chr8_1:66798399-66798418 | None:intergenic | 55.0% |
| CATTGCTGCTCTTCACGGTC+AGG | - | chr8_1:66798602-66798621 | Msa1208620:intron | 55.0% | |
| ! | GAAAGGGGCATACACCAGCA+TGG | - | chr8_1:66799001-66799020 | Msa1208620:five_prime_UTR | 55.0% |
| !! | ATGGCGGGTTCTTCTCCTTC+TGG | + | chr8_1:66797716-66797735 | None:intergenic | 55.0% |
| TGGGACTGTAGTGCATGCTG+AGG | - | chr8_1:66797850-66797869 | Msa1208620:intron | 55.0% | |
| !! | CAAATGCGCGTGGCCGTTTT+GGG | + | chr8_1:66798398-66798417 | None:intergenic | 55.0% |
| ! | TCAAATGCGCGTGGCCGTTT+TGG | + | chr8_1:66798399-66798418 | None:intergenic | 55.0% |
| CATTGCTGCTCTTCACGGTC+AGG | - | chr8_1:66798602-66798621 | Msa1208620:intron | 55.0% | |
| ! | GAAAGGGGCATACACCAGCA+TGG | - | chr8_1:66799001-66799020 | Msa1208620:five_prime_UTR | 55.0% |
| GCGGGTTCTTCTCCTTCTGG+CGG | + | chr8_1:66797713-66797732 | None:intergenic | 60.0% | |
| !!! | CGTGGCCGTTTTGGGAGATC+AGG | + | chr8_1:66798390-66798409 | None:intergenic | 60.0% |
| GCGGGTTCTTCTCCTTCTGG+CGG | + | chr8_1:66797713-66797732 | None:intergenic | 60.0% | |
| !!! | CGTGGCCGTTTTGGGAGATC+AGG | + | chr8_1:66798390-66798409 | None:intergenic | 60.0% |
| CTGGCGGTGAGAGAGAGCGA+GGG | + | chr8_1:66797697-66797716 | None:intergenic | 65.0% | |
| TCTGGCGGTGAGAGAGAGCG+AGG | + | chr8_1:66797698-66797717 | None:intergenic | 65.0% | |
| CGCTCTCTCTCACCGCCAGA+AGG | - | chr8_1:66797698-66797717 | Msa1208620:intron | 65.0% | |
| CTGGCGGTGAGAGAGAGCGA+GGG | + | chr8_1:66797697-66797716 | None:intergenic | 65.0% | |
| TCTGGCGGTGAGAGAGAGCG+AGG | + | chr8_1:66797698-66797717 | None:intergenic | 65.0% | |
| CGCTCTCTCTCACCGCCAGA+AGG | - | chr8_1:66797698-66797717 | Msa1208620:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 66797387 | 66799170 | 66797387 | ID=Msa1208620;Name=Msa1208620 |
| chr8_1 | mRNA | 66797387 | 66799170 | 66797387 | ID=Msa1208620-mRNA-1;Parent=Msa1208620;Name=Msa1208620-mRNA-1;_AED=0.34;_eAED=0.34;_QI=242|1|1|1|1|1|4|118|226 |
| chr8_1 | exon | 66797387 | 66797555 | 66797387 | ID=Msa1208620-mRNA-1:exon:22035;Parent=Msa1208620-mRNA-1 |
| chr8_1 | exon | 66797934 | 66798224 | 66797934 | ID=Msa1208620-mRNA-1:exon:22034;Parent=Msa1208620-mRNA-1 |
| chr8_1 | exon | 66798292 | 66798387 | 66798292 | ID=Msa1208620-mRNA-1:exon:22033;Parent=Msa1208620-mRNA-1 |
| chr8_1 | exon | 66798686 | 66799170 | 66798686 | ID=Msa1208620-mRNA-1:exon:22032;Parent=Msa1208620-mRNA-1 |
| chr8_1 | five_prime_UTR | 66798929 | 66799170 | 66798929 | ID=Msa1208620-mRNA-1:five_prime_utr;Parent=Msa1208620-mRNA-1 |
| chr8_1 | CDS | 66798686 | 66798928 | 66798686 | ID=Msa1208620-mRNA-1:cds;Parent=Msa1208620-mRNA-1 |
| chr8_1 | CDS | 66798292 | 66798387 | 66798292 | ID=Msa1208620-mRNA-1:cds;Parent=Msa1208620-mRNA-1 |
| chr8_1 | CDS | 66797934 | 66798224 | 66797934 | ID=Msa1208620-mRNA-1:cds;Parent=Msa1208620-mRNA-1 |
| chr8_1 | CDS | 66797505 | 66797555 | 66797505 | ID=Msa1208620-mRNA-1:cds;Parent=Msa1208620-mRNA-1 |
| chr8_1 | three_prime_UTR | 66797387 | 66797504 | 66797387 | ID=Msa1208620-mRNA-1:three_prime_utr;Parent=Msa1208620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
