Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418620 | sp|Q9FGS0|CP31B_ARATH | 48.780 | 164 | 79 | 3 | 107 | 268 | 111 | 271 | 5.93e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418620 | A0A2K3P6P0 | 56.716 | 268 | 77 | 7 | 20 | 284 | 10 | 241 | 1.38e-77 | 245 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1418610 | Msa1418620 | 0.988951 | 4.477172e-176 | -8.615850e-47 |
| Msa0633750 | Msa1418620 | 0.804769 | 1.842187e-49 | -8.615850e-47 |
| Msa1258930 | Msa1418620 | 0.860229 | 2.389016e-63 | -8.615850e-47 |
| Msa1208620 | Msa1418620 | 0.857757 | 1.313366e-62 | -8.615850e-47 |
| Msa1208740 | Msa1418620 | 0.859510 | 3.936249e-63 | -8.615850e-47 |
| Msa0593710 | Msa1418620 | 0.806382 | 8.450977e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418620 | MtrunA17_Chr4g0058141 | 90.385 | 104 | 10 | 0 | 149 | 252 | 1 | 104 | 3.75e-66 | 201 |
| Msa1418620 | MtrunA17_Chr4g0058151 | 45.196 | 281 | 105 | 8 | 29 | 268 | 8 | 280 | 1.26e-59 | 191 |
| Msa1418620 | MtrunA17_Chr3g0116631 | 50.602 | 166 | 76 | 4 | 107 | 268 | 107 | 270 | 1.12e-45 | 155 |
| Msa1418620 | MtrunA17_Chr3g0087481 | 35.294 | 170 | 99 | 4 | 110 | 269 | 61 | 229 | 1.37e-20 | 88.2 |
| Msa1418620 | MtrunA17_Chr1g0177101 | 29.348 | 184 | 116 | 5 | 93 | 267 | 92 | 270 | 6.20e-19 | 85.1 |
| Msa1418620 | MtrunA17_Chr7g0267571 | 30.286 | 175 | 112 | 5 | 102 | 267 | 102 | 275 | 2.28e-16 | 77.8 |
| Msa1418620 | MtrunA17_Chr1g0181111 | 35.602 | 191 | 103 | 5 | 96 | 267 | 70 | 259 | 3.85e-16 | 76.6 |
| Msa1418620 | MtrunA17_Chr1g0168601 | 32.759 | 116 | 72 | 2 | 150 | 265 | 105 | 214 | 4.41e-12 | 64.3 |
| Msa1418620 | MtrunA17_Chr3g0120721 | 26.220 | 164 | 108 | 5 | 103 | 263 | 12 | 165 | 5.33e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418620 | AT5G50250.1 | 48.780 | 164 | 79 | 3 | 107 | 268 | 111 | 271 | 6.03e-44 | 151 |
| Msa1418620 | AT4G24770.1 | 48.485 | 165 | 80 | 3 | 106 | 268 | 147 | 308 | 2.54e-41 | 145 |
| Msa1418620 | AT4G24770.2 | 48.485 | 165 | 80 | 3 | 106 | 268 | 147 | 308 | 2.54e-41 | 145 |
| Msa1418620 | AT2G37220.1 | 40.107 | 187 | 80 | 5 | 106 | 267 | 88 | 267 | 2.59e-26 | 105 |
| Msa1418620 | AT3G52150.2 | 33.945 | 218 | 119 | 9 | 73 | 269 | 34 | 247 | 5.07e-20 | 87.4 |
| Msa1418620 | AT3G52150.1 | 33.945 | 218 | 119 | 9 | 73 | 269 | 34 | 247 | 5.07e-20 | 87.4 |
| Msa1418620 | AT3G52380.1 | 30.168 | 179 | 101 | 5 | 105 | 267 | 112 | 282 | 1.51e-19 | 87.4 |
| Msa1418620 | AT2G35410.1 | 32.948 | 173 | 107 | 5 | 104 | 269 | 90 | 260 | 4.11e-18 | 82.8 |
| Msa1418620 | AT1G60000.1 | 31.875 | 160 | 102 | 4 | 110 | 267 | 86 | 240 | 4.57e-12 | 65.1 |
Find 62 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATAGCATTTGAAATAAT+AGG | 0.207293 | tig0024623:-29597 | Msa1418630:three_prime_UTR |
| TCAAATGCGCGTGGCCGTTT+TGG | 0.211966 | tig0024623:-30385 | None:intergenic |
| TGAGTAACATAGACACTAAA+AGG | 0.317271 | tig0024623:-30412 | None:intergenic |
| ATGGCGGGTTCTTCTCCTTC+TGG | 0.342108 | tig0024623:-29694 | Msa1418630:CDS |
| TTCTTCTCTTCTCACATTTG+CGG | 0.355015 | tig0024623:+29716 | Msa1418620:CDS |
| TTGGTGTGCAAGAGTGAATT+AGG | 0.356166 | tig0024623:-29564 | Msa1418630:three_prime_UTR |
| AATAATAGGGAATGTGGTTT+TGG | 0.357319 | tig0024623:-29583 | Msa1418630:three_prime_UTR |
| TAATAGCATTTGAAATAATA+GGG | 0.362798 | tig0024623:-29596 | Msa1418630:three_prime_UTR |
| CTAGCAATGTCTTGTGGATA+AGG | 0.388661 | tig0024623:-29414 | None:intergenic |
| TGGACACAATACGAAATGTT+TGG | 0.388770 | tig0024623:+30171 | Msa1418620:CDS |
| AATGTCATTGCTGCTCTTCA+CGG | 0.407509 | tig0024623:+30586 | Msa1418620:CDS |
| CATCATATGATAATTCTTCA+AGG | 0.413977 | tig0024623:+29646 | Msa1418620:CDS |
| AAATTTCTTGACTGTTAGTA+AGG | 0.416600 | tig0024623:+30333 | Msa1418620:CDS |
| TCAGGTCGATCACAGGGTTA+TGG | 0.424167 | tig0024623:+30529 | Msa1418620:CDS |
| GATTTCAGGTAATTTATACT+TGG | 0.431344 | tig0024623:+30151 | Msa1418620:intron |
| TCTCTTCTCACATTTGCGGT+TGG | 0.448348 | tig0024623:+29720 | Msa1418620:CDS |
| GAAGAATTATCATATGATGA+AGG | 0.452268 | tig0024623:-29642 | Msa1418630:three_prime_UTR |
| CATTGCTGCTCTTCACGGTC+AGG | 0.452683 | tig0024623:+30591 | Msa1418620:CDS |
| TTAATCTGTAACAAAGTCTC+AGG | 0.469763 | tig0024623:+30511 | Msa1418620:CDS |
| GAAAGGAACACCACAACACT+AGG | 0.478587 | tig0024623:-29467 | None:intergenic |
| AAGATTTGAAGATTTACGTT+GGG | 0.481104 | tig0024623:+29763 | Msa1418620:CDS |
| ATTATTCAGCAAACATGGTA+AGG | 0.486096 | tig0024623:+30474 | Msa1418620:CDS |
| ACATTTGCGGTTGGTGATGT+TGG | 0.499859 | tig0024623:+29729 | Msa1418620:CDS |
| GAGAAGGATGAGAAGGAGAA+AGG | 0.504406 | tig0024623:-29484 | None:intergenic |
| AAGAATTATCATATGATGAA+GGG | 0.504905 | tig0024623:-29641 | Msa1418630:three_prime_UTR |
| AACTTCTTCAACGGTACTCA+TGG | 0.505528 | tig0024623:-30202 | None:intergenic |
| ATGTTGAGAGAAGGATGAGA+AGG | 0.505906 | tig0024623:-29491 | None:intergenic |
| CACTACCTGATCTCCCAAAA+CGG | 0.511369 | tig0024623:+30371 | Msa1418620:CDS |
| ATTTGAAATAATAGGGAATG+TGG | 0.513634 | tig0024623:-29589 | Msa1418630:three_prime_UTR |
| CAAAGTCTCAGGTCGATCAC+AGG | 0.513736 | tig0024623:+30522 | Msa1418620:CDS |
| ATCATGTCTATCACAATGAC+AGG | 0.526571 | tig0024623:+29522 | Msa1418620:CDS |
| GACTCAAGATACCGATGTTG+AGG | 0.546964 | tig0024623:+29791 | Msa1418620:CDS |
| CGCTCTCTCTCACCGCCAGA+AGG | 0.551040 | tig0024623:+29679 | Msa1418620:CDS |
| TAACTCAACAACTCCCATGC+TGG | 0.551304 | tig0024623:-31030 | None:intergenic |
| GAACACCACAACACTAGGGT+TGG | 0.551757 | tig0024623:-29462 | None:intergenic |
| AGCCTTCTCAACTTCTTCAA+CGG | 0.556305 | tig0024623:-30211 | None:intergenic |
| TTTGTGTGACAGGAATTAGC+TGG | 0.556926 | tig0024623:+30310 | Msa1418620:intron |
| GAAGATTTGAAGATTTACGT+TGG | 0.564060 | tig0024623:+29762 | Msa1418620:CDS |
| AAGGCTATGAAGAAGTTCAA+TGG | 0.566594 | tig0024623:+30228 | Msa1418620:CDS |
| GTAATATACAAATGAGCGAA+GGG | 0.572899 | tig0024623:-31122 | None:intergenic |
| AGTAATATACAAATGAGCGA+AGG | 0.575850 | tig0024623:-31123 | None:intergenic |
| AATTGAATTGATTAAACACG+TGG | 0.578559 | tig0024623:-29365 | None:intergenic |
| AAAGGGGCATACACCAGCAT+GGG | 0.579969 | tig0024623:+31017 | Msa1418620:CDS |
| CTAATACTAGCAATGTCTTG+TGG | 0.581735 | tig0024623:-29420 | None:intergenic |
| GAGCAATTATTCAGCAAACA+TGG | 0.587655 | tig0024623:+30469 | Msa1418620:CDS |
| TACCGTTGAAGAAGTTGAGA+AGG | 0.595905 | tig0024623:+30209 | Msa1418620:CDS |
| TCTGGCGGTGAGAGAGAGCG+AGG | 0.599566 | tig0024623:-29676 | Msa1418630:CDS |
| TGTTGAGAGTAATGAACACT+TGG | 0.600502 | tig0024623:+30447 | Msa1418620:CDS |
| TGTGAGAAGAGAAGAATGGC+GGG | 0.607125 | tig0024623:-29709 | Msa1418630:exon |
| GCGGGTTCTTCTCCTTCTGG+CGG | 0.609161 | tig0024623:-29691 | Msa1418630:CDS |
| AAAGTCTCAGGTCGATCACA+GGG | 0.610446 | tig0024623:+30523 | Msa1418620:CDS |
| GAAAGGGGCATACACCAGCA+TGG | 0.612791 | tig0024623:+31016 | Msa1418620:intron |
| CAAATGTGAGAAGAGAAGAA+TGG | 0.634541 | tig0024623:-29713 | Msa1418630:exon |
| CAAATCCAACCCTAGTGTTG+TGG | 0.661373 | tig0024623:+29457 | Msa1418620:CDS |
| CTGGCGGTGAGAGAGAGCGA+GGG | 0.661739 | tig0024623:-29675 | Msa1418630:CDS |
| TATAGCTGAATGTTGAGAGA+AGG | 0.662316 | tig0024623:-29500 | None:intergenic |
| AAAGGAACACCACAACACTA+GGG | 0.662871 | tig0024623:-29466 | None:intergenic |
| TCTATGTTACTCAGTTGCCA+CGG | 0.664591 | tig0024623:+30422 | Msa1418620:CDS |
| ATGTGAGAAGAGAAGAATGG+CGG | 0.670632 | tig0024623:-29710 | Msa1418630:exon |
| AAAGGAGAATCAAATGCGCG+TGG | 0.672402 | tig0024623:-30394 | None:intergenic |
| TCATTACTCTCAACACTCCG+TGG | 0.683276 | tig0024623:-30439 | None:intergenic |
| TGGGACTGTAGTGCACGCTG+AGG | 0.722004 | tig0024623:+29839 | Msa1418620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAATAAAAAAAGTTA+AGG | - | tig0024623:29873-29892 | Msa1418630:intron | 10.0% |
| !! | TAATGAAATAAAAAAAGTTA+AGG | - | tig0024623:29873-29892 | Msa1418630:intron | 10.0% |
| !!! | TAATAGCATTTGAAATAATA+GGG | - | tig0024623:29599-29618 | Msa1418630:three_prime_UTR | 15.0% |
| !!! | TTAATAGCATTTGAAATAAT+AGG | - | tig0024623:29600-29619 | Msa1418630:three_prime_UTR | 15.0% |
| !!! | AGATTATGTGTAATATATTT+TGG | + | tig0024623:29896-29915 | Msa1418620:intron | 15.0% |
| !!! | TTAACTTTTTTCATTTTCAA+TGG | - | tig0024623:30082-30101 | None:intergenic | 15.0% |
| !! | ATTAATTTCTTACTTATCAT+TGG | + | tig0024623:30663-30682 | Msa1418620:intron | 15.0% |
| !! | TTATTGTAAGGAATTAAAAA+AGG | + | tig0024623:30791-30810 | Msa1418620:intron | 15.0% |
| !! | TATTGTAAGGAATTAAAAAA+GGG | + | tig0024623:30792-30811 | Msa1418620:intron | 15.0% |
| !!! | AAGACAAATTTTCTTTTAAA+AGG | - | tig0024623:30863-30882 | None:intergenic | 15.0% |
| !!! | TTTTTTATATTAATGCAGAA+AGG | + | tig0024623:30999-31018 | Msa1418620:intron | 15.0% |
| !!! | TTTTTATATTAATGCAGAAA+GGG | + | tig0024623:31000-31019 | Msa1418620:intron | 15.0% |
| !!! | TAATAGCATTTGAAATAATA+GGG | - | tig0024623:29599-29618 | Msa1418630:three_prime_UTR | 15.0% |
| !!! | TTAATAGCATTTGAAATAAT+AGG | - | tig0024623:29600-29619 | Msa1418630:three_prime_UTR | 15.0% |
| !!! | AGATTATGTGTAATATATTT+TGG | + | tig0024623:29896-29915 | Msa1418620:intron | 15.0% |
| !!! | TTAACTTTTTTCATTTTCAA+TGG | - | tig0024623:30082-30101 | None:intergenic | 15.0% |
| !! | ATTAATTTCTTACTTATCAT+TGG | + | tig0024623:30663-30682 | Msa1418620:intron | 15.0% |
| !! | TTATTGTAAGGAATTAAAAA+AGG | + | tig0024623:30791-30810 | Msa1418620:intron | 15.0% |
| !! | TATTGTAAGGAATTAAAAAA+GGG | + | tig0024623:30792-30811 | Msa1418620:intron | 15.0% |
| !!! | AAGACAAATTTTCTTTTAAA+AGG | - | tig0024623:30863-30882 | None:intergenic | 15.0% |
| !!! | TTTTTTATATTAATGCAGAA+AGG | + | tig0024623:30999-31018 | Msa1418620:intron | 15.0% |
| !!! | TTTTTATATTAATGCAGAAA+GGG | + | tig0024623:31000-31019 | Msa1418620:intron | 15.0% |
| !! | AAGAATTATCATATGATGAA+GGG | - | tig0024623:29644-29663 | Msa1418630:exon | 20.0% |
| !!! | TAGACTTAACCATTTTATTA+GGG | - | tig0024623:30024-30043 | None:intergenic | 20.0% |
| !!! | ATAGACTTAACCATTTTATT+AGG | - | tig0024623:30025-30044 | None:intergenic | 20.0% |
| !!! | TACCTGAAATCATTTTATTA+GGG | - | tig0024623:30142-30161 | None:intergenic | 20.0% |
| !!! | TTACCTGAAATCATTTTATT+AGG | - | tig0024623:30143-30162 | None:intergenic | 20.0% |
| !! | TACACTACAAAAATATAAAC+AGG | - | tig0024623:30267-30286 | None:intergenic | 20.0% |
| !!! | AACACGAATGTTTTTTTTTT+TGG | + | tig0024623:30886-30905 | Msa1418620:intron | 20.0% |
| !!! | TTTTATATTAATGCAGAAAG+GGG | + | tig0024623:31001-31020 | Msa1418620:intron | 20.0% |
| !! | AAGAATTATCATATGATGAA+GGG | - | tig0024623:29644-29663 | Msa1418630:exon | 20.0% |
| !!! | TAGACTTAACCATTTTATTA+GGG | - | tig0024623:30024-30043 | None:intergenic | 20.0% |
| !!! | ATAGACTTAACCATTTTATT+AGG | - | tig0024623:30025-30044 | None:intergenic | 20.0% |
| !!! | TACCTGAAATCATTTTATTA+GGG | - | tig0024623:30142-30161 | None:intergenic | 20.0% |
| !!! | TTACCTGAAATCATTTTATT+AGG | - | tig0024623:30143-30162 | None:intergenic | 20.0% |
| !! | TACACTACAAAAATATAAAC+AGG | - | tig0024623:30267-30286 | None:intergenic | 20.0% |
| !!! | AACACGAATGTTTTTTTTTT+TGG | + | tig0024623:30886-30905 | Msa1418620:intron | 20.0% |
| !!! | TTTTATATTAATGCAGAAAG+GGG | + | tig0024623:31001-31020 | Msa1418620:intron | 20.0% |
| !! | ATTTGAAATAATAGGGAATG+TGG | - | tig0024623:29592-29611 | Msa1418630:three_prime_UTR | 25.0% |
| ! | GAAGAATTATCATATGATGA+AGG | - | tig0024623:29645-29664 | Msa1418630:exon | 25.0% |
| ! | CATCATATGATAATTCTTCA+AGG | + | tig0024623:29646-29665 | Msa1418620:CDS | 25.0% |
| ! | AAGATTTGAAGATTTACGTT+GGG | + | tig0024623:29763-29782 | Msa1418620:CDS | 25.0% |
| !!! | AGGAATTGAAAACACTTTTT+GGG | + | tig0024623:29811-29830 | Msa1418620:CDS | 25.0% |
| ! | ATATGCATTCCCTAATAAAA+TGG | + | tig0024623:30012-30031 | Msa1418620:intron | 25.0% |
| ! | ATGGTCAAATTTATTTGTCA+TGG | - | tig0024623:30063-30082 | None:intergenic | 25.0% |
| ! | TTCCCTAATAAAATGATTTC+AGG | + | tig0024623:30137-30156 | Msa1418620:intron | 25.0% |
| !! | GATTTCAGGTAATTTATACT+TGG | + | tig0024623:30151-30170 | Msa1418620:intron | 25.0% |
| !! | TTTTTGTAGTGTAGTTGTTT+AGG | + | tig0024623:30274-30293 | Msa1418620:intron | 25.0% |
| ! | AAATTTCTTGACTGTTAGTA+AGG | + | tig0024623:30333-30352 | Msa1418620:CDS | 25.0% |
| !! | ATTGGTAACATAACATGTAT+TGG | + | tig0024623:30681-30700 | Msa1418620:intron | 25.0% |
| !! | ATTTGAAATAATAGGGAATG+TGG | - | tig0024623:29592-29611 | Msa1418630:three_prime_UTR | 25.0% |
| ! | GAAGAATTATCATATGATGA+AGG | - | tig0024623:29645-29664 | Msa1418630:exon | 25.0% |
| ! | CATCATATGATAATTCTTCA+AGG | + | tig0024623:29646-29665 | Msa1418620:CDS | 25.0% |
| ! | AAGATTTGAAGATTTACGTT+GGG | + | tig0024623:29763-29782 | Msa1418620:CDS | 25.0% |
| !!! | AGGAATTGAAAACACTTTTT+GGG | + | tig0024623:29811-29830 | Msa1418620:CDS | 25.0% |
| ! | ATATGCATTCCCTAATAAAA+TGG | + | tig0024623:30012-30031 | Msa1418620:intron | 25.0% |
| ! | ATGGTCAAATTTATTTGTCA+TGG | - | tig0024623:30063-30082 | None:intergenic | 25.0% |
| ! | TTCCCTAATAAAATGATTTC+AGG | + | tig0024623:30137-30156 | Msa1418620:intron | 25.0% |
| !! | GATTTCAGGTAATTTATACT+TGG | + | tig0024623:30151-30170 | Msa1418620:intron | 25.0% |
| !! | TTTTTGTAGTGTAGTTGTTT+AGG | + | tig0024623:30274-30293 | Msa1418620:intron | 25.0% |
| ! | AAATTTCTTGACTGTTAGTA+AGG | + | tig0024623:30333-30352 | Msa1418620:CDS | 25.0% |
| !! | ATTGGTAACATAACATGTAT+TGG | + | tig0024623:30681-30700 | Msa1418620:intron | 25.0% |
| ! | AATAATAGGGAATGTGGTTT+TGG | - | tig0024623:29586-29605 | Msa1418630:three_prime_UTR | 30.0% |
| GAAGATTTGAAGATTTACGT+TGG | + | tig0024623:29762-29781 | Msa1418620:CDS | 30.0% | |
| ! | TGTTTTCAATTCCTCAACAT+CGG | - | tig0024623:29805-29824 | Msa1418630:intron | 30.0% |
| ! | GAGGAATTGAAAACACTTTT+TGG | + | tig0024623:29810-29829 | Msa1418620:CDS | 30.0% |
| ! | CTTTTGCTTATAGTTTAGTC+AGG | - | tig0024623:29945-29964 | None:intergenic | 30.0% |
| TGAGTAACATAGACACTAAA+AGG | - | tig0024623:30415-30434 | None:intergenic | 30.0% | |
| ATTATTCAGCAAACATGGTA+AGG | + | tig0024623:30474-30493 | Msa1418620:CDS | 30.0% | |
| TTAATCTGTAACAAAGTCTC+AGG | + | tig0024623:30511-30530 | Msa1418620:CDS | 30.0% | |
| !! | CTTTTTGAGAATAACGATGT+TGG | + | tig0024623:30755-30774 | Msa1418620:intron | 30.0% |
| ATAGCTAGAGACTTATTGTA+AGG | + | tig0024623:30779-30798 | Msa1418620:intron | 30.0% | |
| GTAATATACAAATGAGCGAA+GGG | - | tig0024623:31125-31144 | None:intergenic | 30.0% | |
| AGTAATATACAAATGAGCGA+AGG | - | tig0024623:31126-31145 | None:intergenic | 30.0% | |
| ! | AATAATAGGGAATGTGGTTT+TGG | - | tig0024623:29586-29605 | Msa1418630:three_prime_UTR | 30.0% |
| GAAGATTTGAAGATTTACGT+TGG | + | tig0024623:29762-29781 | Msa1418620:CDS | 30.0% | |
| ! | TGTTTTCAATTCCTCAACAT+CGG | - | tig0024623:29805-29824 | Msa1418630:intron | 30.0% |
| ! | GAGGAATTGAAAACACTTTT+TGG | + | tig0024623:29810-29829 | Msa1418620:CDS | 30.0% |
| ! | CTTTTGCTTATAGTTTAGTC+AGG | - | tig0024623:29945-29964 | None:intergenic | 30.0% |
| TGAGTAACATAGACACTAAA+AGG | - | tig0024623:30415-30434 | None:intergenic | 30.0% | |
| ATTATTCAGCAAACATGGTA+AGG | + | tig0024623:30474-30493 | Msa1418620:CDS | 30.0% | |
| TTAATCTGTAACAAAGTCTC+AGG | + | tig0024623:30511-30530 | Msa1418620:CDS | 30.0% | |
| !! | CTTTTTGAGAATAACGATGT+TGG | + | tig0024623:30755-30774 | Msa1418620:intron | 30.0% |
| ATAGCTAGAGACTTATTGTA+AGG | + | tig0024623:30779-30798 | Msa1418620:intron | 30.0% | |
| GTAATATACAAATGAGCGAA+GGG | - | tig0024623:31125-31144 | None:intergenic | 30.0% | |
| AGTAATATACAAATGAGCGA+AGG | - | tig0024623:31126-31145 | None:intergenic | 30.0% | |
| CTAATACTAGCAATGTCTTG+TGG | - | tig0024623:29423-29442 | None:intergenic | 35.0% | |
| TATAGCTGAATGTTGAGAGA+AGG | - | tig0024623:29503-29522 | None:intergenic | 35.0% | |
| ATCATGTCTATCACAATGAC+AGG | + | tig0024623:29522-29541 | Msa1418620:CDS | 35.0% | |
| CAAATGTGAGAAGAGAAGAA+TGG | - | tig0024623:29716-29735 | Msa1418630:exon | 35.0% | |
| TTCTTCTCTTCTCACATTTG+CGG | + | tig0024623:29716-29735 | Msa1418620:CDS | 35.0% | |
| !! | ATTGAAAACACTTTTTGGGC+AGG | + | tig0024623:29815-29834 | Msa1418620:CDS | 35.0% |
| ! | ACGCAGTACAAAATGTTTTC+AGG | + | tig0024623:30110-30129 | Msa1418620:intron | 35.0% |
| TGGACACAATACGAAATGTT+TGG | + | tig0024623:30171-30190 | Msa1418620:CDS | 35.0% | |
| AAGGCTATGAAGAAGTTCAA+TGG | + | tig0024623:30228-30247 | Msa1418620:CDS | 35.0% | |
| TAATTCATCCTTTGTGTGAC+AGG | + | tig0024623:30300-30319 | Msa1418620:intron | 35.0% | |
| TGTTGAGAGTAATGAACACT+TGG | + | tig0024623:30447-30466 | Msa1418620:CDS | 35.0% | |
| GAGCAATTATTCAGCAAACA+TGG | + | tig0024623:30469-30488 | Msa1418620:CDS | 35.0% | |
| TGTTGTTAGCATGACTCTTA+TGG | + | tig0024623:30922-30941 | Msa1418620:intron | 35.0% | |
| CTAATACTAGCAATGTCTTG+TGG | - | tig0024623:29423-29442 | None:intergenic | 35.0% | |
| TATAGCTGAATGTTGAGAGA+AGG | - | tig0024623:29503-29522 | None:intergenic | 35.0% | |
| ATCATGTCTATCACAATGAC+AGG | + | tig0024623:29522-29541 | Msa1418620:CDS | 35.0% | |
| CAAATGTGAGAAGAGAAGAA+TGG | - | tig0024623:29716-29735 | Msa1418630:exon | 35.0% | |
| TTCTTCTCTTCTCACATTTG+CGG | + | tig0024623:29716-29735 | Msa1418620:CDS | 35.0% | |
| !! | ATTGAAAACACTTTTTGGGC+AGG | + | tig0024623:29815-29834 | Msa1418620:CDS | 35.0% |
| ! | ACGCAGTACAAAATGTTTTC+AGG | + | tig0024623:30110-30129 | Msa1418620:intron | 35.0% |
| TGGACACAATACGAAATGTT+TGG | + | tig0024623:30171-30190 | Msa1418620:CDS | 35.0% | |
| AAGGCTATGAAGAAGTTCAA+TGG | + | tig0024623:30228-30247 | Msa1418620:CDS | 35.0% | |
| TAATTCATCCTTTGTGTGAC+AGG | + | tig0024623:30300-30319 | Msa1418620:intron | 35.0% | |
| TGTTGAGAGTAATGAACACT+TGG | + | tig0024623:30447-30466 | Msa1418620:CDS | 35.0% | |
| GAGCAATTATTCAGCAAACA+TGG | + | tig0024623:30469-30488 | Msa1418620:CDS | 35.0% | |
| TGTTGTTAGCATGACTCTTA+TGG | + | tig0024623:30922-30941 | Msa1418620:intron | 35.0% | |
| CTAGCAATGTCTTGTGGATA+AGG | - | tig0024623:29417-29436 | None:intergenic | 40.0% | |
| AAAGGAACACCACAACACTA+GGG | - | tig0024623:29469-29488 | None:intergenic | 40.0% | |
| ATGTTGAGAGAAGGATGAGA+AGG | - | tig0024623:29494-29513 | None:intergenic | 40.0% | |
| TTGGTGTGCAAGAGTGAATT+AGG | - | tig0024623:29567-29586 | Msa1418630:three_prime_UTR | 40.0% | |
| ATGTGAGAAGAGAAGAATGG+CGG | - | tig0024623:29713-29732 | Msa1418630:exon | 40.0% | |
| AACTTCTTCAACGGTACTCA+TGG | - | tig0024623:30205-30224 | None:intergenic | 40.0% | |
| TACCGTTGAAGAAGTTGAGA+AGG | + | tig0024623:30209-30228 | Msa1418620:CDS | 40.0% | |
| AGCCTTCTCAACTTCTTCAA+CGG | - | tig0024623:30214-30233 | None:intergenic | 40.0% | |
| AGCTAATTCCTGTCACACAA+AGG | - | tig0024623:30311-30330 | None:intergenic | 40.0% | |
| TTTGTGTGACAGGAATTAGC+TGG | + | tig0024623:30310-30329 | Msa1418620:intron | 40.0% | |
| TCTATGTTACTCAGTTGCCA+CGG | + | tig0024623:30422-30441 | Msa1418620:CDS | 40.0% | |
| AATGTCATTGCTGCTCTTCA+CGG | + | tig0024623:30586-30605 | Msa1418620:CDS | 40.0% | |
| CTTCACGGTCAGGTAAATAT+TGG | + | tig0024623:30601-30620 | Msa1418620:intron | 40.0% | |
| CTAGCAATGTCTTGTGGATA+AGG | - | tig0024623:29417-29436 | None:intergenic | 40.0% | |
| AAAGGAACACCACAACACTA+GGG | - | tig0024623:29469-29488 | None:intergenic | 40.0% | |
| ATGTTGAGAGAAGGATGAGA+AGG | - | tig0024623:29494-29513 | None:intergenic | 40.0% | |
| TTGGTGTGCAAGAGTGAATT+AGG | - | tig0024623:29567-29586 | Msa1418630:three_prime_UTR | 40.0% | |
| ATGTGAGAAGAGAAGAATGG+CGG | - | tig0024623:29713-29732 | Msa1418630:exon | 40.0% | |
| AACTTCTTCAACGGTACTCA+TGG | - | tig0024623:30205-30224 | None:intergenic | 40.0% | |
| TACCGTTGAAGAAGTTGAGA+AGG | + | tig0024623:30209-30228 | Msa1418620:CDS | 40.0% | |
| AGCCTTCTCAACTTCTTCAA+CGG | - | tig0024623:30214-30233 | None:intergenic | 40.0% | |
| AGCTAATTCCTGTCACACAA+AGG | - | tig0024623:30311-30330 | None:intergenic | 40.0% | |
| TTTGTGTGACAGGAATTAGC+TGG | + | tig0024623:30310-30329 | Msa1418620:intron | 40.0% | |
| TCTATGTTACTCAGTTGCCA+CGG | + | tig0024623:30422-30441 | Msa1418620:CDS | 40.0% | |
| AATGTCATTGCTGCTCTTCA+CGG | + | tig0024623:30586-30605 | Msa1418620:CDS | 40.0% | |
| CTTCACGGTCAGGTAAATAT+TGG | + | tig0024623:30601-30620 | Msa1418620:intron | 40.0% | |
| CAAATCCAACCCTAGTGTTG+TGG | + | tig0024623:29457-29476 | Msa1418620:CDS | 45.0% | |
| GAAAGGAACACCACAACACT+AGG | - | tig0024623:29470-29489 | None:intergenic | 45.0% | |
| GAGAAGGATGAGAAGGAGAA+AGG | - | tig0024623:29487-29506 | None:intergenic | 45.0% | |
| !! | GGGTTTTGTAGCTGCTTGAA+AGG | - | tig0024623:29624-29643 | Msa1418630:three_prime_UTR | 45.0% |
| TGTGAGAAGAGAAGAATGGC+GGG | - | tig0024623:29712-29731 | Msa1418630:exon | 45.0% | |
| TCTCTTCTCACATTTGCGGT+TGG | + | tig0024623:29720-29739 | Msa1418620:CDS | 45.0% | |
| !! | ACATTTGCGGTTGGTGATGT+TGG | + | tig0024623:29729-29748 | Msa1418620:CDS | 45.0% |
| GACTCAAGATACCGATGTTG+AGG | + | tig0024623:29791-29810 | Msa1418620:CDS | 45.0% | |
| !! | AAAACACTTTTTGGGCAGGC+TGG | + | tig0024623:29819-29838 | Msa1418620:CDS | 45.0% |
| !! | AAACACTTTTTGGGCAGGCT+GGG | + | tig0024623:29820-29839 | Msa1418620:CDS | 45.0% |
| CACTACCTGATCTCCCAAAA+CGG | + | tig0024623:30371-30390 | Msa1418620:CDS | 45.0% | |
| AAAGGAGAATCAAATGCGCG+TGG | - | tig0024623:30397-30416 | None:intergenic | 45.0% | |
| TCATTACTCTCAACACTCCG+TGG | - | tig0024623:30442-30461 | None:intergenic | 45.0% | |
| AAAGTCTCAGGTCGATCACA+GGG | + | tig0024623:30523-30542 | Msa1418620:CDS | 45.0% | |
| TAACTCAACAACTCCCATGC+TGG | - | tig0024623:31033-31052 | None:intergenic | 45.0% | |
| CAAATCCAACCCTAGTGTTG+TGG | + | tig0024623:29457-29476 | Msa1418620:CDS | 45.0% | |
| GAAAGGAACACCACAACACT+AGG | - | tig0024623:29470-29489 | None:intergenic | 45.0% | |
| GAGAAGGATGAGAAGGAGAA+AGG | - | tig0024623:29487-29506 | None:intergenic | 45.0% | |
| !! | GGGTTTTGTAGCTGCTTGAA+AGG | - | tig0024623:29624-29643 | Msa1418630:three_prime_UTR | 45.0% |
| TGTGAGAAGAGAAGAATGGC+GGG | - | tig0024623:29712-29731 | Msa1418630:exon | 45.0% | |
| TCTCTTCTCACATTTGCGGT+TGG | + | tig0024623:29720-29739 | Msa1418620:CDS | 45.0% | |
| !! | ACATTTGCGGTTGGTGATGT+TGG | + | tig0024623:29729-29748 | Msa1418620:CDS | 45.0% |
| GACTCAAGATACCGATGTTG+AGG | + | tig0024623:29791-29810 | Msa1418620:CDS | 45.0% | |
| !! | AAAACACTTTTTGGGCAGGC+TGG | + | tig0024623:29819-29838 | Msa1418620:CDS | 45.0% |
| !! | AAACACTTTTTGGGCAGGCT+GGG | + | tig0024623:29820-29839 | Msa1418620:CDS | 45.0% |
| CACTACCTGATCTCCCAAAA+CGG | + | tig0024623:30371-30390 | Msa1418620:CDS | 45.0% | |
| AAAGGAGAATCAAATGCGCG+TGG | - | tig0024623:30397-30416 | None:intergenic | 45.0% | |
| TCATTACTCTCAACACTCCG+TGG | - | tig0024623:30442-30461 | None:intergenic | 45.0% | |
| AAAGTCTCAGGTCGATCACA+GGG | + | tig0024623:30523-30542 | Msa1418620:CDS | 45.0% | |
| TAACTCAACAACTCCCATGC+TGG | - | tig0024623:31033-31052 | None:intergenic | 45.0% | |
| GAACACCACAACACTAGGGT+TGG | - | tig0024623:29465-29484 | None:intergenic | 50.0% | |
| CAAAGTCTCAGGTCGATCAC+AGG | + | tig0024623:30522-30541 | Msa1418620:CDS | 50.0% | |
| TCAGGTCGATCACAGGGTTA+TGG | + | tig0024623:30529-30548 | Msa1418620:CDS | 50.0% | |
| ! | AAAGGGGCATACACCAGCAT+GGG | + | tig0024623:31017-31036 | Msa1418620:CDS | 50.0% |
| GAACACCACAACACTAGGGT+TGG | - | tig0024623:29465-29484 | None:intergenic | 50.0% | |
| CAAAGTCTCAGGTCGATCAC+AGG | + | tig0024623:30522-30541 | Msa1418620:CDS | 50.0% | |
| TCAGGTCGATCACAGGGTTA+TGG | + | tig0024623:30529-30548 | Msa1418620:CDS | 50.0% | |
| ! | AAAGGGGCATACACCAGCAT+GGG | + | tig0024623:31017-31036 | Msa1418620:CDS | 50.0% |
| !! | ATGGCGGGTTCTTCTCCTTC+TGG | - | tig0024623:29697-29716 | Msa1418630:CDS | 55.0% |
| !! | CAAATGCGCGTGGCCGTTTT+GGG | - | tig0024623:30387-30406 | None:intergenic | 55.0% |
| ! | TCAAATGCGCGTGGCCGTTT+TGG | - | tig0024623:30388-30407 | None:intergenic | 55.0% |
| CATTGCTGCTCTTCACGGTC+AGG | + | tig0024623:30591-30610 | Msa1418620:CDS | 55.0% | |
| ! | GAAAGGGGCATACACCAGCA+TGG | + | tig0024623:31016-31035 | Msa1418620:intron | 55.0% |
| !! | ATGGCGGGTTCTTCTCCTTC+TGG | - | tig0024623:29697-29716 | Msa1418630:CDS | 55.0% |
| !! | CAAATGCGCGTGGCCGTTTT+GGG | - | tig0024623:30387-30406 | None:intergenic | 55.0% |
| ! | TCAAATGCGCGTGGCCGTTT+TGG | - | tig0024623:30388-30407 | None:intergenic | 55.0% |
| CATTGCTGCTCTTCACGGTC+AGG | + | tig0024623:30591-30610 | Msa1418620:CDS | 55.0% | |
| ! | GAAAGGGGCATACACCAGCA+TGG | + | tig0024623:31016-31035 | Msa1418620:intron | 55.0% |
| GCGGGTTCTTCTCCTTCTGG+CGG | - | tig0024623:29694-29713 | Msa1418630:CDS | 60.0% | |
| TGGGACTGTAGTGCACGCTG+AGG | + | tig0024623:29839-29858 | Msa1418620:CDS | 60.0% | |
| !!! | CGTGGCCGTTTTGGGAGATC+AGG | - | tig0024623:30379-30398 | None:intergenic | 60.0% |
| GCGGGTTCTTCTCCTTCTGG+CGG | - | tig0024623:29694-29713 | Msa1418630:CDS | 60.0% | |
| TGGGACTGTAGTGCACGCTG+AGG | + | tig0024623:29839-29858 | Msa1418620:CDS | 60.0% | |
| !!! | CGTGGCCGTTTTGGGAGATC+AGG | - | tig0024623:30379-30398 | None:intergenic | 60.0% |
| CTGGCGGTGAGAGAGAGCGA+GGG | - | tig0024623:29678-29697 | Msa1418630:CDS | 65.0% | |
| TCTGGCGGTGAGAGAGAGCG+AGG | - | tig0024623:29679-29698 | Msa1418630:CDS | 65.0% | |
| CGCTCTCTCTCACCGCCAGA+AGG | + | tig0024623:29679-29698 | Msa1418620:CDS | 65.0% | |
| CTGGCGGTGAGAGAGAGCGA+GGG | - | tig0024623:29678-29697 | Msa1418630:CDS | 65.0% | |
| TCTGGCGGTGAGAGAGAGCG+AGG | - | tig0024623:29679-29698 | Msa1418630:CDS | 65.0% | |
| CGCTCTCTCTCACCGCCAGA+AGG | + | tig0024623:29679-29698 | Msa1418620:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024623 | gene | 29368 | 31185 | 29368 | ID=Msa1418620;Name=Msa1418620 |
| tig0024623 | mRNA | 29368 | 31185 | 29368 | ID=Msa1418620-mRNA-1;Parent=Msa1418620;Name=Msa1418620-mRNA-1;_AED=0.38;_eAED=0.38;_QI=76|1|1|1|1|1|4|118|284 |
| tig0024623 | exon | 29368 | 29860 | 29368 | ID=Msa1418620-mRNA-1:exon:460;Parent=Msa1418620-mRNA-1 |
| tig0024623 | exon | 30159 | 30254 | 30159 | ID=Msa1418620-mRNA-1:exon:461;Parent=Msa1418620-mRNA-1 |
| tig0024623 | exon | 30322 | 30612 | 30322 | ID=Msa1418620-mRNA-1:exon:462;Parent=Msa1418620-mRNA-1 |
| tig0024623 | exon | 31017 | 31185 | 31017 | ID=Msa1418620-mRNA-1:exon:463;Parent=Msa1418620-mRNA-1 |
| tig0024623 | five_prime_UTR | 29368 | 29443 | 29368 | ID=Msa1418620-mRNA-1:five_prime_utr;Parent=Msa1418620-mRNA-1 |
| tig0024623 | CDS | 29444 | 29860 | 29444 | ID=Msa1418620-mRNA-1:cds;Parent=Msa1418620-mRNA-1 |
| tig0024623 | CDS | 30159 | 30254 | 30159 | ID=Msa1418620-mRNA-1:cds;Parent=Msa1418620-mRNA-1 |
| tig0024623 | CDS | 30322 | 30612 | 30322 | ID=Msa1418620-mRNA-1:cds;Parent=Msa1418620-mRNA-1 |
| tig0024623 | CDS | 31017 | 31067 | 31017 | ID=Msa1418620-mRNA-1:cds;Parent=Msa1418620-mRNA-1 |
| tig0024623 | three_prime_UTR | 31068 | 31185 | 31068 | ID=Msa1418620-mRNA-1:three_prime_utr;Parent=Msa1418620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
