Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418610 | sp|Q9FGS0|CP31B_ARATH | 48.780 | 164 | 79 | 3 | 107 | 268 | 111 | 271 | 5.93e-43 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418610 | A0A2K3P6P0 | 56.716 | 268 | 77 | 7 | 20 | 284 | 10 | 241 | 1.38e-77 | 245 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1418610 | Msa1418620 | 0.988951 | 4.477172e-176 | -8.615850e-47 |
| Msa1258930 | Msa1418610 | 0.859585 | 3.735052e-63 | -8.615850e-47 |
| Msa1208620 | Msa1418610 | 0.859866 | 3.074717e-63 | -8.615850e-47 |
| Msa1208740 | Msa1418610 | 0.853620 | 2.118238e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418610 | MtrunA17_Chr4g0058141 | 90.385 | 104 | 10 | 0 | 149 | 252 | 1 | 104 | 3.75e-66 | 201 |
| Msa1418610 | MtrunA17_Chr4g0058151 | 45.196 | 281 | 105 | 8 | 29 | 268 | 8 | 280 | 1.26e-59 | 191 |
| Msa1418610 | MtrunA17_Chr3g0116631 | 50.602 | 166 | 76 | 4 | 107 | 268 | 107 | 270 | 1.12e-45 | 155 |
| Msa1418610 | MtrunA17_Chr3g0087481 | 35.294 | 170 | 99 | 4 | 110 | 269 | 61 | 229 | 1.37e-20 | 88.2 |
| Msa1418610 | MtrunA17_Chr1g0177101 | 29.348 | 184 | 116 | 5 | 93 | 267 | 92 | 270 | 6.20e-19 | 85.1 |
| Msa1418610 | MtrunA17_Chr7g0267571 | 30.286 | 175 | 112 | 5 | 102 | 267 | 102 | 275 | 2.28e-16 | 77.8 |
| Msa1418610 | MtrunA17_Chr1g0181111 | 35.602 | 191 | 103 | 5 | 96 | 267 | 70 | 259 | 3.85e-16 | 76.6 |
| Msa1418610 | MtrunA17_Chr1g0168601 | 32.759 | 116 | 72 | 2 | 150 | 265 | 105 | 214 | 4.41e-12 | 64.3 |
| Msa1418610 | MtrunA17_Chr3g0120721 | 26.220 | 164 | 108 | 5 | 103 | 263 | 12 | 165 | 5.33e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1418610 | AT5G50250.1 | 48.780 | 164 | 79 | 3 | 107 | 268 | 111 | 271 | 6.03e-44 | 151 |
| Msa1418610 | AT4G24770.1 | 48.485 | 165 | 80 | 3 | 106 | 268 | 147 | 308 | 2.54e-41 | 145 |
| Msa1418610 | AT4G24770.2 | 48.485 | 165 | 80 | 3 | 106 | 268 | 147 | 308 | 2.54e-41 | 145 |
| Msa1418610 | AT2G37220.1 | 40.107 | 187 | 80 | 5 | 106 | 267 | 88 | 267 | 2.59e-26 | 105 |
| Msa1418610 | AT3G52150.2 | 33.945 | 218 | 119 | 9 | 73 | 269 | 34 | 247 | 5.07e-20 | 87.4 |
| Msa1418610 | AT3G52150.1 | 33.945 | 218 | 119 | 9 | 73 | 269 | 34 | 247 | 5.07e-20 | 87.4 |
| Msa1418610 | AT3G52380.1 | 30.168 | 179 | 101 | 5 | 105 | 267 | 112 | 282 | 1.51e-19 | 87.4 |
| Msa1418610 | AT2G35410.1 | 32.948 | 173 | 107 | 5 | 104 | 269 | 90 | 260 | 4.11e-18 | 82.8 |
| Msa1418610 | AT1G60000.1 | 31.875 | 160 | 102 | 4 | 110 | 267 | 86 | 240 | 4.57e-12 | 65.1 |
Find 62 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATAGCATTTGAAATAAT+AGG | 0.207293 | tig0024623:-24651 | None:intergenic |
| TCAAATGCGCGTGGCCGTTT+TGG | 0.211966 | tig0024623:-25439 | None:intergenic |
| TGAGTAACATAGACACTAAA+AGG | 0.317271 | tig0024623:-25466 | None:intergenic |
| ATGGCGGGTTCTTCTCCTTC+TGG | 0.342108 | tig0024623:-24748 | None:intergenic |
| TTCTTCTCTTCTCACATTTG+CGG | 0.355015 | tig0024623:+24770 | Msa1418610:CDS |
| TTGGTGTGCAAGAGTGAATT+AGG | 0.356166 | tig0024623:-24618 | None:intergenic |
| AATAATAGGGAATGTGGTTT+TGG | 0.357319 | tig0024623:-24637 | None:intergenic |
| TAATAGCATTTGAAATAATA+GGG | 0.362798 | tig0024623:-24650 | None:intergenic |
| CTAGCAATGTCTTGTGGATA+AGG | 0.388661 | tig0024623:-24468 | None:intergenic |
| TGGACACAATACGAAATGTT+TGG | 0.388770 | tig0024623:+25225 | Msa1418610:CDS |
| AATGTCATTGCTGCTCTTCA+CGG | 0.407509 | tig0024623:+25640 | Msa1418610:CDS |
| CATCATATGATAATTCTTCA+AGG | 0.413977 | tig0024623:+24700 | Msa1418610:CDS |
| AAATTTCTTGACTGTTAGTA+AGG | 0.416600 | tig0024623:+25387 | Msa1418610:CDS |
| TCAGGTCGATCACAGGGTTA+TGG | 0.424167 | tig0024623:+25583 | Msa1418610:CDS |
| GATTTCAGGTAATTTATACT+TGG | 0.431344 | tig0024623:+25205 | Msa1418610:intron |
| TCTCTTCTCACATTTGCGGT+TGG | 0.448348 | tig0024623:+24774 | Msa1418610:CDS |
| GAAGAATTATCATATGATGA+AGG | 0.452268 | tig0024623:-24696 | None:intergenic |
| CATTGCTGCTCTTCACGGTC+AGG | 0.452683 | tig0024623:+25645 | Msa1418610:CDS |
| TTAATCTGTAACAAAGTCTC+AGG | 0.469763 | tig0024623:+25565 | Msa1418610:CDS |
| GAAAGGAACACCACAACACT+AGG | 0.478587 | tig0024623:-24521 | None:intergenic |
| AAGATTTGAAGATTTACGTT+GGG | 0.481104 | tig0024623:+24817 | Msa1418610:CDS |
| ATTATTCAGCAAACATGGTA+AGG | 0.486096 | tig0024623:+25528 | Msa1418610:CDS |
| ACATTTGCGGTTGGTGATGT+TGG | 0.499859 | tig0024623:+24783 | Msa1418610:CDS |
| GAGAAGGATGAGAAGGAGAA+AGG | 0.504406 | tig0024623:-24538 | None:intergenic |
| AAGAATTATCATATGATGAA+GGG | 0.504905 | tig0024623:-24695 | None:intergenic |
| AACTTCTTCAACGGTACTCA+TGG | 0.505528 | tig0024623:-25256 | None:intergenic |
| ATGTTGAGAGAAGGATGAGA+AGG | 0.505906 | tig0024623:-24545 | None:intergenic |
| CACTACCTGATCTCCCAAAA+CGG | 0.511369 | tig0024623:+25425 | Msa1418610:CDS |
| ATTTGAAATAATAGGGAATG+TGG | 0.513634 | tig0024623:-24643 | None:intergenic |
| CAAAGTCTCAGGTCGATCAC+AGG | 0.513736 | tig0024623:+25576 | Msa1418610:CDS |
| ATCATGTCTATCACAATGAC+AGG | 0.526571 | tig0024623:+24576 | Msa1418610:CDS |
| GACTCAAGATACCGATGTTG+AGG | 0.546964 | tig0024623:+24845 | Msa1418610:CDS |
| CGCTCTCTCTCACCGCCAGA+AGG | 0.551040 | tig0024623:+24733 | Msa1418610:CDS |
| TAACTCAACAACTCCCATGC+TGG | 0.551304 | tig0024623:-26085 | None:intergenic |
| GAACACCACAACACTAGGGT+TGG | 0.551757 | tig0024623:-24516 | None:intergenic |
| AGCCTTCTCAACTTCTTCAA+CGG | 0.556305 | tig0024623:-25265 | None:intergenic |
| TTTGTGTGACAGGAATTAGC+TGG | 0.556926 | tig0024623:+25364 | Msa1418610:intron |
| GAAGATTTGAAGATTTACGT+TGG | 0.564060 | tig0024623:+24816 | Msa1418610:CDS |
| AAGGCTATGAAGAAGTTCAA+TGG | 0.566594 | tig0024623:+25282 | Msa1418610:CDS |
| GTAATATACAAATGAGCGAA+GGG | 0.572899 | tig0024623:-26177 | None:intergenic |
| AGTAATATACAAATGAGCGA+AGG | 0.575850 | tig0024623:-26178 | None:intergenic |
| AATTGAATTGATTAAACACG+TGG | 0.578559 | tig0024623:-24419 | None:intergenic |
| AAAGGGGCATACACCAGCAT+GGG | 0.579969 | tig0024623:+26072 | Msa1418610:CDS |
| CTAATACTAGCAATGTCTTG+TGG | 0.581735 | tig0024623:-24474 | None:intergenic |
| GAGCAATTATTCAGCAAACA+TGG | 0.587655 | tig0024623:+25523 | Msa1418610:CDS |
| TACCGTTGAAGAAGTTGAGA+AGG | 0.595905 | tig0024623:+25263 | Msa1418610:CDS |
| TCTGGCGGTGAGAGAGAGCG+AGG | 0.599566 | tig0024623:-24730 | None:intergenic |
| TGTTGAGAGTAATGAACACT+TGG | 0.600502 | tig0024623:+25501 | Msa1418610:CDS |
| TGTGAGAAGAGAAGAATGGC+GGG | 0.607125 | tig0024623:-24763 | None:intergenic |
| GCGGGTTCTTCTCCTTCTGG+CGG | 0.609161 | tig0024623:-24745 | None:intergenic |
| AAAGTCTCAGGTCGATCACA+GGG | 0.610446 | tig0024623:+25577 | Msa1418610:CDS |
| GAAAGGGGCATACACCAGCA+TGG | 0.612791 | tig0024623:+26071 | Msa1418610:intron |
| CAAATGTGAGAAGAGAAGAA+TGG | 0.634541 | tig0024623:-24767 | None:intergenic |
| CAAATCCAACCCTAGTGTTG+TGG | 0.661373 | tig0024623:+24511 | Msa1418610:CDS |
| CTGGCGGTGAGAGAGAGCGA+GGG | 0.661739 | tig0024623:-24729 | None:intergenic |
| TATAGCTGAATGTTGAGAGA+AGG | 0.662316 | tig0024623:-24554 | None:intergenic |
| AAAGGAACACCACAACACTA+GGG | 0.662871 | tig0024623:-24520 | None:intergenic |
| TCTATGTTACTCAGTTGCCA+CGG | 0.664591 | tig0024623:+25476 | Msa1418610:CDS |
| ATGTGAGAAGAGAAGAATGG+CGG | 0.670632 | tig0024623:-24764 | None:intergenic |
| AAAGGAGAATCAAATGCGCG+TGG | 0.672402 | tig0024623:-25448 | None:intergenic |
| TCATTACTCTCAACACTCCG+TGG | 0.683276 | tig0024623:-25493 | None:intergenic |
| TGGGACTGTAGTGCACGCTG+AGG | 0.722004 | tig0024623:+24893 | Msa1418610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAATAAAAAAAGTTA+AGG | - | tig0024623:24927-24946 | None:intergenic | 10.0% |
| !! | TAATGAAATAAAAAAAGTTA+AGG | - | tig0024623:24927-24946 | None:intergenic | 10.0% |
| !!! | TAATAGCATTTGAAATAATA+GGG | - | tig0024623:24653-24672 | None:intergenic | 15.0% |
| !!! | TTAATAGCATTTGAAATAAT+AGG | - | tig0024623:24654-24673 | None:intergenic | 15.0% |
| !!! | AGATTATGTGTAATATATTT+TGG | + | tig0024623:24950-24969 | Msa1418610:intron | 15.0% |
| !!! | TTAACTTTTTTCATTTTCAA+TGG | - | tig0024623:25136-25155 | None:intergenic | 15.0% |
| !! | ATTAATTTCTTACTTATCAT+TGG | + | tig0024623:25717-25736 | Msa1418610:intron | 15.0% |
| !! | TTATTGTAAGGAATTAAAAA+AGG | + | tig0024623:25846-25865 | Msa1418610:intron | 15.0% |
| !! | TATTGTAAGGAATTAAAAAA+GGG | + | tig0024623:25847-25866 | Msa1418610:intron | 15.0% |
| !!! | AAGACAAATTTTCTTTTAAA+AGG | - | tig0024623:25918-25937 | None:intergenic | 15.0% |
| !!! | TTTTTTATATTAATGCAGAA+AGG | + | tig0024623:26054-26073 | Msa1418610:intron | 15.0% |
| !!! | TTTTTATATTAATGCAGAAA+GGG | + | tig0024623:26055-26074 | Msa1418610:intron | 15.0% |
| !!! | TAATAGCATTTGAAATAATA+GGG | - | tig0024623:24653-24672 | None:intergenic | 15.0% |
| !!! | TTAATAGCATTTGAAATAAT+AGG | - | tig0024623:24654-24673 | None:intergenic | 15.0% |
| !!! | AGATTATGTGTAATATATTT+TGG | + | tig0024623:24950-24969 | Msa1418610:intron | 15.0% |
| !!! | TTAACTTTTTTCATTTTCAA+TGG | - | tig0024623:25136-25155 | None:intergenic | 15.0% |
| !! | ATTAATTTCTTACTTATCAT+TGG | + | tig0024623:25717-25736 | Msa1418610:intron | 15.0% |
| !! | TTATTGTAAGGAATTAAAAA+AGG | + | tig0024623:25846-25865 | Msa1418610:intron | 15.0% |
| !! | TATTGTAAGGAATTAAAAAA+GGG | + | tig0024623:25847-25866 | Msa1418610:intron | 15.0% |
| !!! | AAGACAAATTTTCTTTTAAA+AGG | - | tig0024623:25918-25937 | None:intergenic | 15.0% |
| !!! | TTTTTTATATTAATGCAGAA+AGG | + | tig0024623:26054-26073 | Msa1418610:intron | 15.0% |
| !!! | TTTTTATATTAATGCAGAAA+GGG | + | tig0024623:26055-26074 | Msa1418610:intron | 15.0% |
| !! | AAGAATTATCATATGATGAA+GGG | - | tig0024623:24698-24717 | None:intergenic | 20.0% |
| !!! | TAGACTTAACCATTTTATTA+GGG | - | tig0024623:25078-25097 | None:intergenic | 20.0% |
| !!! | ATAGACTTAACCATTTTATT+AGG | - | tig0024623:25079-25098 | None:intergenic | 20.0% |
| !!! | TACCTGAAATCATTTTATTA+GGG | - | tig0024623:25196-25215 | None:intergenic | 20.0% |
| !!! | TTACCTGAAATCATTTTATT+AGG | - | tig0024623:25197-25216 | None:intergenic | 20.0% |
| !! | TACACTACAAAAATATAAAC+AGG | - | tig0024623:25321-25340 | None:intergenic | 20.0% |
| !!! | TTTTATATTAATGCAGAAAG+GGG | + | tig0024623:26056-26075 | Msa1418610:intron | 20.0% |
| !! | AAGAATTATCATATGATGAA+GGG | - | tig0024623:24698-24717 | None:intergenic | 20.0% |
| !!! | TAGACTTAACCATTTTATTA+GGG | - | tig0024623:25078-25097 | None:intergenic | 20.0% |
| !!! | ATAGACTTAACCATTTTATT+AGG | - | tig0024623:25079-25098 | None:intergenic | 20.0% |
| !!! | TACCTGAAATCATTTTATTA+GGG | - | tig0024623:25196-25215 | None:intergenic | 20.0% |
| !!! | TTACCTGAAATCATTTTATT+AGG | - | tig0024623:25197-25216 | None:intergenic | 20.0% |
| !! | TACACTACAAAAATATAAAC+AGG | - | tig0024623:25321-25340 | None:intergenic | 20.0% |
| !!! | TTTTATATTAATGCAGAAAG+GGG | + | tig0024623:26056-26075 | Msa1418610:intron | 20.0% |
| !! | ATTTGAAATAATAGGGAATG+TGG | - | tig0024623:24646-24665 | None:intergenic | 25.0% |
| ! | GAAGAATTATCATATGATGA+AGG | - | tig0024623:24699-24718 | None:intergenic | 25.0% |
| ! | CATCATATGATAATTCTTCA+AGG | + | tig0024623:24700-24719 | Msa1418610:CDS | 25.0% |
| ! | AAGATTTGAAGATTTACGTT+GGG | + | tig0024623:24817-24836 | Msa1418610:CDS | 25.0% |
| !!! | AGGAATTGAAAACACTTTTT+GGG | + | tig0024623:24865-24884 | Msa1418610:CDS | 25.0% |
| ! | ATATGCATTCCCTAATAAAA+TGG | + | tig0024623:25066-25085 | Msa1418610:intron | 25.0% |
| ! | ATGGTCAAATTTATTTGTCA+TGG | - | tig0024623:25117-25136 | None:intergenic | 25.0% |
| ! | TTCCCTAATAAAATGATTTC+AGG | + | tig0024623:25191-25210 | Msa1418610:intron | 25.0% |
| !! | GATTTCAGGTAATTTATACT+TGG | + | tig0024623:25205-25224 | Msa1418610:intron | 25.0% |
| !! | TTTTTGTAGTGTAGTTGTTT+AGG | + | tig0024623:25328-25347 | Msa1418610:intron | 25.0% |
| ! | AAATTTCTTGACTGTTAGTA+AGG | + | tig0024623:25387-25406 | Msa1418610:CDS | 25.0% |
| !! | ATTGGTAACATAACATGTAT+TGG | + | tig0024623:25735-25754 | Msa1418610:intron | 25.0% |
| !!! | TTTTTTGAGAATAACGATGT+TGG | + | tig0024623:25810-25829 | Msa1418610:intron | 25.0% |
| !!! | CAACACGAATGTTTTTTTTT+TGG | + | tig0024623:25940-25959 | Msa1418610:intron | 25.0% |
| !! | ATTTGAAATAATAGGGAATG+TGG | - | tig0024623:24646-24665 | None:intergenic | 25.0% |
| ! | GAAGAATTATCATATGATGA+AGG | - | tig0024623:24699-24718 | None:intergenic | 25.0% |
| ! | CATCATATGATAATTCTTCA+AGG | + | tig0024623:24700-24719 | Msa1418610:CDS | 25.0% |
| ! | AAGATTTGAAGATTTACGTT+GGG | + | tig0024623:24817-24836 | Msa1418610:CDS | 25.0% |
| !!! | AGGAATTGAAAACACTTTTT+GGG | + | tig0024623:24865-24884 | Msa1418610:CDS | 25.0% |
| ! | ATATGCATTCCCTAATAAAA+TGG | + | tig0024623:25066-25085 | Msa1418610:intron | 25.0% |
| ! | ATGGTCAAATTTATTTGTCA+TGG | - | tig0024623:25117-25136 | None:intergenic | 25.0% |
| ! | TTCCCTAATAAAATGATTTC+AGG | + | tig0024623:25191-25210 | Msa1418610:intron | 25.0% |
| !! | GATTTCAGGTAATTTATACT+TGG | + | tig0024623:25205-25224 | Msa1418610:intron | 25.0% |
| !! | TTTTTGTAGTGTAGTTGTTT+AGG | + | tig0024623:25328-25347 | Msa1418610:intron | 25.0% |
| ! | AAATTTCTTGACTGTTAGTA+AGG | + | tig0024623:25387-25406 | Msa1418610:CDS | 25.0% |
| !! | ATTGGTAACATAACATGTAT+TGG | + | tig0024623:25735-25754 | Msa1418610:intron | 25.0% |
| !!! | TTTTTTGAGAATAACGATGT+TGG | + | tig0024623:25810-25829 | Msa1418610:intron | 25.0% |
| !!! | CAACACGAATGTTTTTTTTT+TGG | + | tig0024623:25940-25959 | Msa1418610:intron | 25.0% |
| ! | AATAATAGGGAATGTGGTTT+TGG | - | tig0024623:24640-24659 | None:intergenic | 30.0% |
| GAAGATTTGAAGATTTACGT+TGG | + | tig0024623:24816-24835 | Msa1418610:CDS | 30.0% | |
| ! | TGTTTTCAATTCCTCAACAT+CGG | - | tig0024623:24859-24878 | None:intergenic | 30.0% |
| ! | GAGGAATTGAAAACACTTTT+TGG | + | tig0024623:24864-24883 | Msa1418610:CDS | 30.0% |
| ! | CTTTTGCTTATAGTTTAGTC+AGG | - | tig0024623:24999-25018 | None:intergenic | 30.0% |
| TGAGTAACATAGACACTAAA+AGG | - | tig0024623:25469-25488 | None:intergenic | 30.0% | |
| ATTATTCAGCAAACATGGTA+AGG | + | tig0024623:25528-25547 | Msa1418610:CDS | 30.0% | |
| TTAATCTGTAACAAAGTCTC+AGG | + | tig0024623:25565-25584 | Msa1418610:CDS | 30.0% | |
| ATAGCTAGAGACTTATTGTA+AGG | + | tig0024623:25834-25853 | Msa1418610:intron | 30.0% | |
| GTAATATACAAATGAGCGAA+GGG | - | tig0024623:26180-26199 | None:intergenic | 30.0% | |
| AGTAATATACAAATGAGCGA+AGG | - | tig0024623:26181-26200 | None:intergenic | 30.0% | |
| ! | AATAATAGGGAATGTGGTTT+TGG | - | tig0024623:24640-24659 | None:intergenic | 30.0% |
| GAAGATTTGAAGATTTACGT+TGG | + | tig0024623:24816-24835 | Msa1418610:CDS | 30.0% | |
| ! | TGTTTTCAATTCCTCAACAT+CGG | - | tig0024623:24859-24878 | None:intergenic | 30.0% |
| ! | GAGGAATTGAAAACACTTTT+TGG | + | tig0024623:24864-24883 | Msa1418610:CDS | 30.0% |
| ! | CTTTTGCTTATAGTTTAGTC+AGG | - | tig0024623:24999-25018 | None:intergenic | 30.0% |
| TGAGTAACATAGACACTAAA+AGG | - | tig0024623:25469-25488 | None:intergenic | 30.0% | |
| ATTATTCAGCAAACATGGTA+AGG | + | tig0024623:25528-25547 | Msa1418610:CDS | 30.0% | |
| TTAATCTGTAACAAAGTCTC+AGG | + | tig0024623:25565-25584 | Msa1418610:CDS | 30.0% | |
| ATAGCTAGAGACTTATTGTA+AGG | + | tig0024623:25834-25853 | Msa1418610:intron | 30.0% | |
| GTAATATACAAATGAGCGAA+GGG | - | tig0024623:26180-26199 | None:intergenic | 30.0% | |
| AGTAATATACAAATGAGCGA+AGG | - | tig0024623:26181-26200 | None:intergenic | 30.0% | |
| CTAATACTAGCAATGTCTTG+TGG | - | tig0024623:24477-24496 | None:intergenic | 35.0% | |
| TATAGCTGAATGTTGAGAGA+AGG | - | tig0024623:24557-24576 | None:intergenic | 35.0% | |
| ATCATGTCTATCACAATGAC+AGG | + | tig0024623:24576-24595 | Msa1418610:CDS | 35.0% | |
| CAAATGTGAGAAGAGAAGAA+TGG | - | tig0024623:24770-24789 | None:intergenic | 35.0% | |
| TTCTTCTCTTCTCACATTTG+CGG | + | tig0024623:24770-24789 | Msa1418610:CDS | 35.0% | |
| !! | ATTGAAAACACTTTTTGGGC+AGG | + | tig0024623:24869-24888 | Msa1418610:CDS | 35.0% |
| ! | ACGCAGTACAAAATGTTTTC+AGG | + | tig0024623:25164-25183 | Msa1418610:intron | 35.0% |
| TGGACACAATACGAAATGTT+TGG | + | tig0024623:25225-25244 | Msa1418610:CDS | 35.0% | |
| AAGGCTATGAAGAAGTTCAA+TGG | + | tig0024623:25282-25301 | Msa1418610:CDS | 35.0% | |
| TAATTCATCCTTTGTGTGAC+AGG | + | tig0024623:25354-25373 | Msa1418610:intron | 35.0% | |
| TGTTGAGAGTAATGAACACT+TGG | + | tig0024623:25501-25520 | Msa1418610:CDS | 35.0% | |
| GAGCAATTATTCAGCAAACA+TGG | + | tig0024623:25523-25542 | Msa1418610:CDS | 35.0% | |
| TGTTGTTAGCATGACTCTTA+TGG | + | tig0024623:25976-25995 | Msa1418610:intron | 35.0% | |
| CTAATACTAGCAATGTCTTG+TGG | - | tig0024623:24477-24496 | None:intergenic | 35.0% | |
| TATAGCTGAATGTTGAGAGA+AGG | - | tig0024623:24557-24576 | None:intergenic | 35.0% | |
| ATCATGTCTATCACAATGAC+AGG | + | tig0024623:24576-24595 | Msa1418610:CDS | 35.0% | |
| CAAATGTGAGAAGAGAAGAA+TGG | - | tig0024623:24770-24789 | None:intergenic | 35.0% | |
| TTCTTCTCTTCTCACATTTG+CGG | + | tig0024623:24770-24789 | Msa1418610:CDS | 35.0% | |
| !! | ATTGAAAACACTTTTTGGGC+AGG | + | tig0024623:24869-24888 | Msa1418610:CDS | 35.0% |
| ! | ACGCAGTACAAAATGTTTTC+AGG | + | tig0024623:25164-25183 | Msa1418610:intron | 35.0% |
| TGGACACAATACGAAATGTT+TGG | + | tig0024623:25225-25244 | Msa1418610:CDS | 35.0% | |
| AAGGCTATGAAGAAGTTCAA+TGG | + | tig0024623:25282-25301 | Msa1418610:CDS | 35.0% | |
| TAATTCATCCTTTGTGTGAC+AGG | + | tig0024623:25354-25373 | Msa1418610:intron | 35.0% | |
| TGTTGAGAGTAATGAACACT+TGG | + | tig0024623:25501-25520 | Msa1418610:CDS | 35.0% | |
| GAGCAATTATTCAGCAAACA+TGG | + | tig0024623:25523-25542 | Msa1418610:CDS | 35.0% | |
| TGTTGTTAGCATGACTCTTA+TGG | + | tig0024623:25976-25995 | Msa1418610:intron | 35.0% | |
| CTAGCAATGTCTTGTGGATA+AGG | - | tig0024623:24471-24490 | None:intergenic | 40.0% | |
| AAAGGAACACCACAACACTA+GGG | - | tig0024623:24523-24542 | None:intergenic | 40.0% | |
| ATGTTGAGAGAAGGATGAGA+AGG | - | tig0024623:24548-24567 | None:intergenic | 40.0% | |
| TTGGTGTGCAAGAGTGAATT+AGG | - | tig0024623:24621-24640 | None:intergenic | 40.0% | |
| ATGTGAGAAGAGAAGAATGG+CGG | - | tig0024623:24767-24786 | None:intergenic | 40.0% | |
| AACTTCTTCAACGGTACTCA+TGG | - | tig0024623:25259-25278 | None:intergenic | 40.0% | |
| TACCGTTGAAGAAGTTGAGA+AGG | + | tig0024623:25263-25282 | Msa1418610:CDS | 40.0% | |
| AGCCTTCTCAACTTCTTCAA+CGG | - | tig0024623:25268-25287 | None:intergenic | 40.0% | |
| AGCTAATTCCTGTCACACAA+AGG | - | tig0024623:25365-25384 | None:intergenic | 40.0% | |
| TTTGTGTGACAGGAATTAGC+TGG | + | tig0024623:25364-25383 | Msa1418610:intron | 40.0% | |
| TCTATGTTACTCAGTTGCCA+CGG | + | tig0024623:25476-25495 | Msa1418610:CDS | 40.0% | |
| AATGTCATTGCTGCTCTTCA+CGG | + | tig0024623:25640-25659 | Msa1418610:CDS | 40.0% | |
| CTTCACGGTCAGGTAAATAT+TGG | + | tig0024623:25655-25674 | Msa1418610:intron | 40.0% | |
| CTAGCAATGTCTTGTGGATA+AGG | - | tig0024623:24471-24490 | None:intergenic | 40.0% | |
| AAAGGAACACCACAACACTA+GGG | - | tig0024623:24523-24542 | None:intergenic | 40.0% | |
| ATGTTGAGAGAAGGATGAGA+AGG | - | tig0024623:24548-24567 | None:intergenic | 40.0% | |
| TTGGTGTGCAAGAGTGAATT+AGG | - | tig0024623:24621-24640 | None:intergenic | 40.0% | |
| ATGTGAGAAGAGAAGAATGG+CGG | - | tig0024623:24767-24786 | None:intergenic | 40.0% | |
| AACTTCTTCAACGGTACTCA+TGG | - | tig0024623:25259-25278 | None:intergenic | 40.0% | |
| TACCGTTGAAGAAGTTGAGA+AGG | + | tig0024623:25263-25282 | Msa1418610:CDS | 40.0% | |
| AGCCTTCTCAACTTCTTCAA+CGG | - | tig0024623:25268-25287 | None:intergenic | 40.0% | |
| AGCTAATTCCTGTCACACAA+AGG | - | tig0024623:25365-25384 | None:intergenic | 40.0% | |
| TTTGTGTGACAGGAATTAGC+TGG | + | tig0024623:25364-25383 | Msa1418610:intron | 40.0% | |
| TCTATGTTACTCAGTTGCCA+CGG | + | tig0024623:25476-25495 | Msa1418610:CDS | 40.0% | |
| AATGTCATTGCTGCTCTTCA+CGG | + | tig0024623:25640-25659 | Msa1418610:CDS | 40.0% | |
| CTTCACGGTCAGGTAAATAT+TGG | + | tig0024623:25655-25674 | Msa1418610:intron | 40.0% | |
| CAAATCCAACCCTAGTGTTG+TGG | + | tig0024623:24511-24530 | Msa1418610:CDS | 45.0% | |
| GAAAGGAACACCACAACACT+AGG | - | tig0024623:24524-24543 | None:intergenic | 45.0% | |
| GAGAAGGATGAGAAGGAGAA+AGG | - | tig0024623:24541-24560 | None:intergenic | 45.0% | |
| !! | GGGTTTTGTAGCTGCTTGAA+AGG | - | tig0024623:24678-24697 | None:intergenic | 45.0% |
| TGTGAGAAGAGAAGAATGGC+GGG | - | tig0024623:24766-24785 | None:intergenic | 45.0% | |
| TCTCTTCTCACATTTGCGGT+TGG | + | tig0024623:24774-24793 | Msa1418610:CDS | 45.0% | |
| !! | ACATTTGCGGTTGGTGATGT+TGG | + | tig0024623:24783-24802 | Msa1418610:CDS | 45.0% |
| GACTCAAGATACCGATGTTG+AGG | + | tig0024623:24845-24864 | Msa1418610:CDS | 45.0% | |
| !! | AAAACACTTTTTGGGCAGGC+TGG | + | tig0024623:24873-24892 | Msa1418610:CDS | 45.0% |
| !! | AAACACTTTTTGGGCAGGCT+GGG | + | tig0024623:24874-24893 | Msa1418610:CDS | 45.0% |
| CACTACCTGATCTCCCAAAA+CGG | + | tig0024623:25425-25444 | Msa1418610:CDS | 45.0% | |
| AAAGGAGAATCAAATGCGCG+TGG | - | tig0024623:25451-25470 | None:intergenic | 45.0% | |
| TCATTACTCTCAACACTCCG+TGG | - | tig0024623:25496-25515 | None:intergenic | 45.0% | |
| AAAGTCTCAGGTCGATCACA+GGG | + | tig0024623:25577-25596 | Msa1418610:CDS | 45.0% | |
| TAACTCAACAACTCCCATGC+TGG | - | tig0024623:26088-26107 | None:intergenic | 45.0% | |
| CAAATCCAACCCTAGTGTTG+TGG | + | tig0024623:24511-24530 | Msa1418610:CDS | 45.0% | |
| GAAAGGAACACCACAACACT+AGG | - | tig0024623:24524-24543 | None:intergenic | 45.0% | |
| GAGAAGGATGAGAAGGAGAA+AGG | - | tig0024623:24541-24560 | None:intergenic | 45.0% | |
| !! | GGGTTTTGTAGCTGCTTGAA+AGG | - | tig0024623:24678-24697 | None:intergenic | 45.0% |
| TGTGAGAAGAGAAGAATGGC+GGG | - | tig0024623:24766-24785 | None:intergenic | 45.0% | |
| TCTCTTCTCACATTTGCGGT+TGG | + | tig0024623:24774-24793 | Msa1418610:CDS | 45.0% | |
| !! | ACATTTGCGGTTGGTGATGT+TGG | + | tig0024623:24783-24802 | Msa1418610:CDS | 45.0% |
| GACTCAAGATACCGATGTTG+AGG | + | tig0024623:24845-24864 | Msa1418610:CDS | 45.0% | |
| !! | AAAACACTTTTTGGGCAGGC+TGG | + | tig0024623:24873-24892 | Msa1418610:CDS | 45.0% |
| !! | AAACACTTTTTGGGCAGGCT+GGG | + | tig0024623:24874-24893 | Msa1418610:CDS | 45.0% |
| CACTACCTGATCTCCCAAAA+CGG | + | tig0024623:25425-25444 | Msa1418610:CDS | 45.0% | |
| AAAGGAGAATCAAATGCGCG+TGG | - | tig0024623:25451-25470 | None:intergenic | 45.0% | |
| TCATTACTCTCAACACTCCG+TGG | - | tig0024623:25496-25515 | None:intergenic | 45.0% | |
| AAAGTCTCAGGTCGATCACA+GGG | + | tig0024623:25577-25596 | Msa1418610:CDS | 45.0% | |
| TAACTCAACAACTCCCATGC+TGG | - | tig0024623:26088-26107 | None:intergenic | 45.0% | |
| GAACACCACAACACTAGGGT+TGG | - | tig0024623:24519-24538 | None:intergenic | 50.0% | |
| CAAAGTCTCAGGTCGATCAC+AGG | + | tig0024623:25576-25595 | Msa1418610:CDS | 50.0% | |
| TCAGGTCGATCACAGGGTTA+TGG | + | tig0024623:25583-25602 | Msa1418610:CDS | 50.0% | |
| ! | AAAGGGGCATACACCAGCAT+GGG | + | tig0024623:26072-26091 | Msa1418610:CDS | 50.0% |
| GAACACCACAACACTAGGGT+TGG | - | tig0024623:24519-24538 | None:intergenic | 50.0% | |
| CAAAGTCTCAGGTCGATCAC+AGG | + | tig0024623:25576-25595 | Msa1418610:CDS | 50.0% | |
| TCAGGTCGATCACAGGGTTA+TGG | + | tig0024623:25583-25602 | Msa1418610:CDS | 50.0% | |
| ! | AAAGGGGCATACACCAGCAT+GGG | + | tig0024623:26072-26091 | Msa1418610:CDS | 50.0% |
| !! | ATGGCGGGTTCTTCTCCTTC+TGG | - | tig0024623:24751-24770 | None:intergenic | 55.0% |
| !! | CAAATGCGCGTGGCCGTTTT+GGG | - | tig0024623:25441-25460 | None:intergenic | 55.0% |
| ! | TCAAATGCGCGTGGCCGTTT+TGG | - | tig0024623:25442-25461 | None:intergenic | 55.0% |
| CATTGCTGCTCTTCACGGTC+AGG | + | tig0024623:25645-25664 | Msa1418610:CDS | 55.0% | |
| ! | GAAAGGGGCATACACCAGCA+TGG | + | tig0024623:26071-26090 | Msa1418610:intron | 55.0% |
| !! | ATGGCGGGTTCTTCTCCTTC+TGG | - | tig0024623:24751-24770 | None:intergenic | 55.0% |
| !! | CAAATGCGCGTGGCCGTTTT+GGG | - | tig0024623:25441-25460 | None:intergenic | 55.0% |
| ! | TCAAATGCGCGTGGCCGTTT+TGG | - | tig0024623:25442-25461 | None:intergenic | 55.0% |
| CATTGCTGCTCTTCACGGTC+AGG | + | tig0024623:25645-25664 | Msa1418610:CDS | 55.0% | |
| ! | GAAAGGGGCATACACCAGCA+TGG | + | tig0024623:26071-26090 | Msa1418610:intron | 55.0% |
| GCGGGTTCTTCTCCTTCTGG+CGG | - | tig0024623:24748-24767 | None:intergenic | 60.0% | |
| TGGGACTGTAGTGCACGCTG+AGG | + | tig0024623:24893-24912 | Msa1418610:CDS | 60.0% | |
| !!! | CGTGGCCGTTTTGGGAGATC+AGG | - | tig0024623:25433-25452 | None:intergenic | 60.0% |
| GCGGGTTCTTCTCCTTCTGG+CGG | - | tig0024623:24748-24767 | None:intergenic | 60.0% | |
| TGGGACTGTAGTGCACGCTG+AGG | + | tig0024623:24893-24912 | Msa1418610:CDS | 60.0% | |
| !!! | CGTGGCCGTTTTGGGAGATC+AGG | - | tig0024623:25433-25452 | None:intergenic | 60.0% |
| CTGGCGGTGAGAGAGAGCGA+GGG | - | tig0024623:24732-24751 | None:intergenic | 65.0% | |
| TCTGGCGGTGAGAGAGAGCG+AGG | - | tig0024623:24733-24752 | None:intergenic | 65.0% | |
| CGCTCTCTCTCACCGCCAGA+AGG | + | tig0024623:24733-24752 | Msa1418610:CDS | 65.0% | |
| CTGGCGGTGAGAGAGAGCGA+GGG | - | tig0024623:24732-24751 | None:intergenic | 65.0% | |
| TCTGGCGGTGAGAGAGAGCG+AGG | - | tig0024623:24733-24752 | None:intergenic | 65.0% | |
| CGCTCTCTCTCACCGCCAGA+AGG | + | tig0024623:24733-24752 | Msa1418610:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024623 | gene | 24422 | 26240 | 24422 | ID=Msa1418610;Name=Msa1418610 |
| tig0024623 | mRNA | 24422 | 26240 | 24422 | ID=Msa1418610-mRNA-1;Parent=Msa1418610;Name=Msa1418610-mRNA-1;_AED=0.38;_eAED=0.38;_QI=76|1|1|1|1|1|4|118|284 |
| tig0024623 | exon | 24422 | 24914 | 24422 | ID=Msa1418610-mRNA-1:exon:456;Parent=Msa1418610-mRNA-1 |
| tig0024623 | exon | 25213 | 25308 | 25213 | ID=Msa1418610-mRNA-1:exon:457;Parent=Msa1418610-mRNA-1 |
| tig0024623 | exon | 25376 | 25666 | 25376 | ID=Msa1418610-mRNA-1:exon:458;Parent=Msa1418610-mRNA-1 |
| tig0024623 | exon | 26072 | 26240 | 26072 | ID=Msa1418610-mRNA-1:exon:459;Parent=Msa1418610-mRNA-1 |
| tig0024623 | five_prime_UTR | 24422 | 24497 | 24422 | ID=Msa1418610-mRNA-1:five_prime_utr;Parent=Msa1418610-mRNA-1 |
| tig0024623 | CDS | 24498 | 24914 | 24498 | ID=Msa1418610-mRNA-1:cds;Parent=Msa1418610-mRNA-1 |
| tig0024623 | CDS | 25213 | 25308 | 25213 | ID=Msa1418610-mRNA-1:cds;Parent=Msa1418610-mRNA-1 |
| tig0024623 | CDS | 25376 | 25666 | 25376 | ID=Msa1418610-mRNA-1:cds;Parent=Msa1418610-mRNA-1 |
| tig0024623 | CDS | 26072 | 26122 | 26072 | ID=Msa1418610-mRNA-1:cds;Parent=Msa1418610-mRNA-1 |
| tig0024623 | three_prime_UTR | 26123 | 26240 | 26123 | ID=Msa1418610-mRNA-1:three_prime_utr;Parent=Msa1418610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
