Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208740 | KEH31744.1 | 90.385 | 104 | 10 | 0 | 91 | 194 | 1 | 104 | 5.49e-63 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208740 | sp|Q9FGS0|CP31B_ARATH | 48.765 | 162 | 78 | 3 | 52 | 211 | 114 | 272 | 1.59e-42 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1208620 | Msa1208740 | 0.931094 | 6.274862e-94 | -8.615850e-47 |
| Msa1208740 | Msa1258930 | 0.937081 | 6.173269e-98 | -8.615850e-47 |
| Msa1208740 | Msa1418610 | 0.853620 | 2.118238e-61 | -8.615850e-47 |
| Msa1208740 | Msa1418620 | 0.859510 | 3.936249e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208740 | MtrunA17_Chr4g0058141 | 90.385 | 104 | 10 | 0 | 91 | 194 | 1 | 104 | 5.05e-67 | 201 |
| Msa1208740 | MtrunA17_Chr4g0058151 | 54.938 | 162 | 68 | 4 | 51 | 210 | 122 | 280 | 6.99e-48 | 159 |
| Msa1208740 | MtrunA17_Chr3g0116631 | 50.307 | 163 | 75 | 4 | 52 | 210 | 110 | 270 | 1.04e-44 | 151 |
| Msa1208740 | MtrunA17_Chr3g0087481 | 35.465 | 172 | 100 | 4 | 50 | 211 | 59 | 229 | 5.86e-21 | 87.8 |
| Msa1208740 | MtrunA17_Chr1g0177101 | 30.539 | 167 | 102 | 5 | 52 | 209 | 109 | 270 | 1.19e-18 | 82.8 |
| Msa1208740 | MtrunA17_Chr7g0267571 | 30.539 | 167 | 106 | 5 | 52 | 209 | 110 | 275 | 3.05e-16 | 76.3 |
| Msa1208740 | MtrunA17_Chr1g0181111 | 35.227 | 176 | 95 | 4 | 52 | 209 | 85 | 259 | 1.82e-15 | 73.6 |
| Msa1208740 | MtrunA17_Chr1g0168601 | 32.759 | 116 | 72 | 2 | 92 | 207 | 105 | 214 | 2.23e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1208740 | AT5G50250.1 | 48.765 | 162 | 78 | 3 | 52 | 211 | 114 | 272 | 1.61e-43 | 148 |
| Msa1208740 | AT4G24770.1 | 48.148 | 162 | 79 | 3 | 52 | 211 | 151 | 309 | 1.08e-40 | 142 |
| Msa1208740 | AT4G24770.2 | 48.148 | 162 | 79 | 3 | 52 | 211 | 151 | 309 | 1.08e-40 | 142 |
| Msa1208740 | AT2G37220.1 | 39.130 | 184 | 80 | 4 | 51 | 209 | 91 | 267 | 2.07e-25 | 100 |
| Msa1208740 | AT3G52150.2 | 34.483 | 203 | 113 | 8 | 21 | 211 | 53 | 247 | 7.55e-20 | 85.5 |
| Msa1208740 | AT3G52150.1 | 34.483 | 203 | 113 | 8 | 21 | 211 | 53 | 247 | 7.55e-20 | 85.5 |
| Msa1208740 | AT3G52380.1 | 29.885 | 174 | 98 | 5 | 52 | 209 | 117 | 282 | 4.86e-19 | 84.3 |
| Msa1208740 | AT2G35410.1 | 32.934 | 167 | 103 | 5 | 52 | 211 | 96 | 260 | 2.06e-18 | 82.4 |
| Msa1208740 | AT1G60000.1 | 31.875 | 160 | 102 | 4 | 52 | 209 | 86 | 240 | 1.85e-12 | 65.1 |
Find 61 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAATAGCATTTGAAATAAT+AGG | 0.207293 | 8_1:+67000481 | None:intergenic |
| TCAAATGCGCGTGGCCGTTT+TGG | 0.211966 | 8_1:+66999701 | None:intergenic |
| TGAGTAACATAGACACTAAA+AGG | 0.317271 | 8_1:+66999674 | None:intergenic |
| ATGGCGGGTTCTTCTCCTTC+TGG | 0.342108 | 8_1:+67000384 | None:intergenic |
| TTCTTCTCTTCTCACATTTG+CGG | 0.355015 | 8_1:-67000362 | Msa1208740:CDS |
| TTGGTGTGCAAGAGTGAATT+AGG | 0.356166 | 8_1:+67000514 | None:intergenic |
| AATAATAGGGAATGTGGTTT+TGG | 0.357319 | 8_1:+67000495 | None:intergenic |
| TAATAGCATTTGAAATAATA+GGG | 0.362798 | 8_1:+67000482 | None:intergenic |
| CTAGCATTGTCTTGTGGATA+AGG | 0.388661 | 8_1:+67000664 | None:intergenic |
| TGGACACAATACGAAATGTT+TGG | 0.388770 | 8_1:-66999915 | Msa1208740:CDS |
| AATGTCATTGCTGCTCTTCA+CGG | 0.407509 | 8_1:-66999500 | Msa1208740:CDS |
| CATCATATGATAATTCTTCA+AGG | 0.413977 | 8_1:-67000432 | Msa1208740:CDS |
| AAATTTCTTGACTGTTAGTA+AGG | 0.416600 | 8_1:-66999753 | Msa1208740:CDS |
| TCAGGTCGATCACAGGGTTA+TGG | 0.424167 | 8_1:-66999557 | Msa1208740:CDS |
| GATTTCAGGTAATTTATACT+TGG | 0.431344 | 8_1:-66999935 | Msa1208740:intron |
| TGATATACAAATTGAGCAAA+AGG | 0.441910 | 8_1:+66998961 | None:intergenic |
| TCTCTTCTCACATTTGCGGT+TGG | 0.448348 | 8_1:-67000358 | Msa1208740:CDS |
| GAAGAATTATCATATGATGA+AGG | 0.452268 | 8_1:+67000436 | None:intergenic |
| CATTGCTGCTCTTCACGGTC+AGG | 0.452683 | 8_1:-66999495 | Msa1208740:intron |
| TTCTTCTGAAGATTTACGTT+GGG | 0.466529 | 8_1:-67000323 | Msa1208740:CDS |
| TTAATCTGTAACAAAGTCTC+AGG | 0.469763 | 8_1:-66999575 | Msa1208740:CDS |
| GAAAGGAACACCACAACACT+AGG | 0.478587 | 8_1:+67000611 | None:intergenic |
| ATTATTCAGCAAACATGGTA+AGG | 0.486096 | 8_1:-66999612 | Msa1208740:CDS |
| ACATTTGCGGTTGGTGATGT+TGG | 0.499859 | 8_1:-67000349 | Msa1208740:CDS |
| GAGAAGGATGAGAAGGAGAA+AGG | 0.504406 | 8_1:+67000594 | None:intergenic |
| AAGAATTATCATATGATGAA+GGG | 0.504905 | 8_1:+67000437 | None:intergenic |
| AACTTCTTCAACGGTACTCA+TGG | 0.505528 | 8_1:+66999884 | None:intergenic |
| ATGTTGAGAGAAGGATGAGA+AGG | 0.505906 | 8_1:+67000587 | None:intergenic |
| CACTACCTGATCTCCCAAAA+CGG | 0.511369 | 8_1:-66999715 | Msa1208740:CDS |
| ATTTGAAATAATAGGGAATG+TGG | 0.513634 | 8_1:+67000489 | None:intergenic |
| CAAAGTCTCAGGTCGATCAC+AGG | 0.513736 | 8_1:-66999564 | Msa1208740:CDS |
| ATCATGTCTATCACAATGAC+AGG | 0.526571 | 8_1:-67000556 | Msa1208740:five_prime_UTR |
| GACTCAAGATACCGATGTTG+AGG | 0.546964 | 8_1:-67000295 | Msa1208740:CDS |
| CGCTCTCTCTCACCGCCAGA+AGG | 0.551040 | 8_1:-67000399 | Msa1208740:CDS |
| CTAATACTAGCATTGTCTTG+TGG | 0.551172 | 8_1:+67000658 | None:intergenic |
| TAACTCAACAACTCCCATGC+TGG | 0.551304 | 8_1:+66999053 | None:intergenic |
| ATTCTTCTGAAGATTTACGT+TGG | 0.551307 | 8_1:-67000324 | Msa1208740:CDS |
| GAACACCACAACACTAGGGT+TGG | 0.551757 | 8_1:+67000616 | None:intergenic |
| AGCCTTCTCAACTTCTTCAA+CGG | 0.556305 | 8_1:+66999875 | None:intergenic |
| TTTGTGTGACAGGAATTAGC+TGG | 0.556926 | 8_1:-66999776 | Msa1208740:intron |
| AAGGCTATGAAGAAGTTCAA+TGG | 0.566594 | 8_1:-66999858 | Msa1208740:CDS |
| AATTGAATTGATTAAACACG+TGG | 0.578559 | 8_1:+67000713 | None:intergenic |
| AAAGGGGCATACACCAGCAT+GGG | 0.579969 | 8_1:-66999066 | Msa1208740:CDS |
| GAGCAATTATTCAGCAAACA+TGG | 0.587655 | 8_1:-66999617 | Msa1208740:CDS |
| TACCGTTGAAGAAGTTGAGA+AGG | 0.595905 | 8_1:-66999877 | Msa1208740:CDS |
| TCTGGCGGTGAGAGAGAGCG+AGG | 0.599566 | 8_1:+67000402 | None:intergenic |
| TGTTGAGAGTAATGAACACT+TGG | 0.600502 | 8_1:-66999639 | Msa1208740:CDS |
| TGTGAGAAGAGAAGAATGGC+GGG | 0.607125 | 8_1:+67000369 | None:intergenic |
| GCGGGTTCTTCTCCTTCTGG+CGG | 0.609161 | 8_1:+67000387 | None:intergenic |
| AAAGTCTCAGGTCGATCACA+GGG | 0.610446 | 8_1:-66999563 | Msa1208740:CDS |
| GAAAGGGGCATACACCAGCA+TGG | 0.612791 | 8_1:-66999067 | Msa1208740:CDS |
| CAAATGTGAGAAGAGAAGAA+TGG | 0.634541 | 8_1:+67000365 | None:intergenic |
| CAAATCCAACCCTAGTGTTG+TGG | 0.661373 | 8_1:-67000621 | Msa1208740:five_prime_UTR |
| CTGGCGGTGAGAGAGAGCGA+GGG | 0.661739 | 8_1:+67000403 | None:intergenic |
| TATAGCTGAATGTTGAGAGA+AGG | 0.662316 | 8_1:+67000578 | None:intergenic |
| AAAGGAACACCACAACACTA+GGG | 0.662871 | 8_1:+67000612 | None:intergenic |
| TCTATGTTACTCAGTTGCCA+CGG | 0.664591 | 8_1:-66999664 | Msa1208740:CDS |
| ATGTGAGAAGAGAAGAATGG+CGG | 0.670632 | 8_1:+67000368 | None:intergenic |
| AAAGGAGAATCAAATGCGCG+TGG | 0.672402 | 8_1:+66999692 | None:intergenic |
| TCATTACTCTCAACACTCCG+TGG | 0.683276 | 8_1:+66999647 | None:intergenic |
| TGGGACTGTAGTGCATGCTG+AGG | 0.704678 | 8_1:-67000247 | Msa1208740:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAAATAAAAAAAGTTA+AGG | + | chr8_1:66999417-66999436 | None:intergenic | 10.0% |
| !! | TAATGAAATAAAAAAAGTTA+AGG | + | chr8_1:66999417-66999436 | None:intergenic | 10.0% |
| !!! | TAATAGCATTTGAAATAATA+GGG | + | chr8_1:66999151-66999170 | None:intergenic | 15.0% |
| !!! | TTAATAGCATTTGAAATAAT+AGG | + | chr8_1:66999152-66999171 | None:intergenic | 15.0% |
| !!! | AGATTATGTGTAATATATTT+TGG | - | chr8_1:66999440-66999459 | Msa1208740:intron | 15.0% |
| !!! | TTAACTTTTTTCATTTTCAA+TGG | + | chr8_1:66999626-66999645 | None:intergenic | 15.0% |
| !! | ATTAATTTCTTACTTATCAT+TGG | - | chr8_1:67000207-67000226 | Msa1208740:intron | 15.0% |
| !!! | AAGACAAATTTTCTTTTAAA+AGG | + | chr8_1:67000408-67000427 | None:intergenic | 15.0% |
| !!! | TTTTTTATATTAATGCAGAA+AGG | - | chr8_1:67000546-67000565 | Msa1208740:five_prime_UTR | 15.0% |
| !!! | TTTTTATATTAATGCAGAAA+GGG | - | chr8_1:67000547-67000566 | Msa1208740:five_prime_UTR | 15.0% |
| !!! | TAATAGCATTTGAAATAATA+GGG | + | chr8_1:66999151-66999170 | None:intergenic | 15.0% |
| !!! | TTAATAGCATTTGAAATAAT+AGG | + | chr8_1:66999152-66999171 | None:intergenic | 15.0% |
| !!! | AGATTATGTGTAATATATTT+TGG | - | chr8_1:66999440-66999459 | Msa1208740:intron | 15.0% |
| !!! | TTAACTTTTTTCATTTTCAA+TGG | + | chr8_1:66999626-66999645 | None:intergenic | 15.0% |
| !! | ATTAATTTCTTACTTATCAT+TGG | - | chr8_1:67000207-67000226 | Msa1208740:intron | 15.0% |
| !!! | AAGACAAATTTTCTTTTAAA+AGG | + | chr8_1:67000408-67000427 | None:intergenic | 15.0% |
| !!! | TTTTTTATATTAATGCAGAA+AGG | - | chr8_1:67000546-67000565 | Msa1208740:five_prime_UTR | 15.0% |
| !!! | TTTTTATATTAATGCAGAAA+GGG | - | chr8_1:67000547-67000566 | Msa1208740:five_prime_UTR | 15.0% |
| !! | AAGAATTATCATATGATGAA+GGG | + | chr8_1:66999196-66999215 | None:intergenic | 20.0% |
| !!! | TAGACTTAACCATTTTATTA+GGG | + | chr8_1:66999568-66999587 | None:intergenic | 20.0% |
| !!! | ATAGACTTAACCATTTTATT+AGG | + | chr8_1:66999569-66999588 | None:intergenic | 20.0% |
| !!! | TACCTGAAATCATTTTATTA+GGG | + | chr8_1:66999686-66999705 | None:intergenic | 20.0% |
| !!! | TTACCTGAAATCATTTTATT+AGG | + | chr8_1:66999687-66999706 | None:intergenic | 20.0% |
| !! | TACACTACAAAAATATAAAC+AGG | + | chr8_1:66999811-66999830 | None:intergenic | 20.0% |
| !! | TTGTTGTAAGGAATTAAAAA+AGG | - | chr8_1:67000336-67000355 | Msa1208740:CDS | 20.0% |
| !! | TGTTGTAAGGAATTAAAAAA+GGG | - | chr8_1:67000337-67000356 | Msa1208740:CDS | 20.0% |
| !!! | TTTTATATTAATGCAGAAAG+GGG | - | chr8_1:67000548-67000567 | Msa1208740:five_prime_UTR | 20.0% |
| !! | AAGAATTATCATATGATGAA+GGG | + | chr8_1:66999196-66999215 | None:intergenic | 20.0% |
| !!! | TAGACTTAACCATTTTATTA+GGG | + | chr8_1:66999568-66999587 | None:intergenic | 20.0% |
| !!! | ATAGACTTAACCATTTTATT+AGG | + | chr8_1:66999569-66999588 | None:intergenic | 20.0% |
| !!! | TACCTGAAATCATTTTATTA+GGG | + | chr8_1:66999686-66999705 | None:intergenic | 20.0% |
| !!! | TTACCTGAAATCATTTTATT+AGG | + | chr8_1:66999687-66999706 | None:intergenic | 20.0% |
| !! | TACACTACAAAAATATAAAC+AGG | + | chr8_1:66999811-66999830 | None:intergenic | 20.0% |
| !! | TTGTTGTAAGGAATTAAAAA+AGG | - | chr8_1:67000336-67000355 | Msa1208740:CDS | 20.0% |
| !! | TGTTGTAAGGAATTAAAAAA+GGG | - | chr8_1:67000337-67000356 | Msa1208740:CDS | 20.0% |
| !!! | TTTTATATTAATGCAGAAAG+GGG | - | chr8_1:67000548-67000567 | Msa1208740:five_prime_UTR | 20.0% |
| !! | ATTTGAAATAATAGGGAATG+TGG | + | chr8_1:66999144-66999163 | None:intergenic | 25.0% |
| ! | GAAGAATTATCATATGATGA+AGG | + | chr8_1:66999197-66999216 | None:intergenic | 25.0% |
| ! | CATCATATGATAATTCTTCA+AGG | - | chr8_1:66999198-66999217 | Msa1208740:intron | 25.0% |
| !!! | AGGAATTGAAAACACTTTTT+GGG | - | chr8_1:66999355-66999374 | Msa1208740:intron | 25.0% |
| ! | ATATGCATTCCCTAATAAAA+TGG | - | chr8_1:66999556-66999575 | Msa1208740:CDS | 25.0% |
| ! | ATGGTCAAATTTATTTGTCA+TGG | + | chr8_1:66999607-66999626 | None:intergenic | 25.0% |
| ! | TTCCCTAATAAAATGATTTC+AGG | - | chr8_1:66999681-66999700 | Msa1208740:CDS | 25.0% |
| !! | GATTTCAGGTAATTTATACT+TGG | - | chr8_1:66999695-66999714 | Msa1208740:CDS | 25.0% |
| !! | TTTTTGTAGTGTAGTTGTTT+AGG | - | chr8_1:66999818-66999837 | Msa1208740:intron | 25.0% |
| ! | AAATTTCTTGACTGTTAGTA+AGG | - | chr8_1:66999877-66999896 | Msa1208740:CDS | 25.0% |
| !! | ATTGGTAACATAACATGTAT+TGG | - | chr8_1:67000225-67000244 | Msa1208740:intron | 25.0% |
| !!! | TTTTTTGAGAATAACGATGT+TGG | - | chr8_1:67000300-67000319 | Msa1208740:CDS | 25.0% |
| ! | TAGTACTAGTATTACCATAA+GGG | + | chr8_1:67000485-67000504 | None:intergenic | 25.0% |
| ! | TGATATACAAATTGAGCAAA+AGG | + | chr8_1:67000672-67000691 | None:intergenic | 25.0% |
| !! | ATTTGAAATAATAGGGAATG+TGG | + | chr8_1:66999144-66999163 | None:intergenic | 25.0% |
| ! | GAAGAATTATCATATGATGA+AGG | + | chr8_1:66999197-66999216 | None:intergenic | 25.0% |
| ! | CATCATATGATAATTCTTCA+AGG | - | chr8_1:66999198-66999217 | Msa1208740:intron | 25.0% |
| !!! | AGGAATTGAAAACACTTTTT+GGG | - | chr8_1:66999355-66999374 | Msa1208740:intron | 25.0% |
| ! | ATATGCATTCCCTAATAAAA+TGG | - | chr8_1:66999556-66999575 | Msa1208740:CDS | 25.0% |
| ! | ATGGTCAAATTTATTTGTCA+TGG | + | chr8_1:66999607-66999626 | None:intergenic | 25.0% |
| ! | TTCCCTAATAAAATGATTTC+AGG | - | chr8_1:66999681-66999700 | Msa1208740:CDS | 25.0% |
| !! | GATTTCAGGTAATTTATACT+TGG | - | chr8_1:66999695-66999714 | Msa1208740:CDS | 25.0% |
| !! | TTTTTGTAGTGTAGTTGTTT+AGG | - | chr8_1:66999818-66999837 | Msa1208740:intron | 25.0% |
| ! | AAATTTCTTGACTGTTAGTA+AGG | - | chr8_1:66999877-66999896 | Msa1208740:CDS | 25.0% |
| !! | ATTGGTAACATAACATGTAT+TGG | - | chr8_1:67000225-67000244 | Msa1208740:intron | 25.0% |
| !!! | TTTTTTGAGAATAACGATGT+TGG | - | chr8_1:67000300-67000319 | Msa1208740:CDS | 25.0% |
| ! | TAGTACTAGTATTACCATAA+GGG | + | chr8_1:67000485-67000504 | None:intergenic | 25.0% |
| ! | TGATATACAAATTGAGCAAA+AGG | + | chr8_1:67000672-67000691 | None:intergenic | 25.0% |
| ! | AATAATAGGGAATGTGGTTT+TGG | + | chr8_1:66999138-66999157 | None:intergenic | 30.0% |
| ! | ATTCTTCTGAAGATTTACGT+TGG | - | chr8_1:66999306-66999325 | Msa1208740:intron | 30.0% |
| ! | TTCTTCTGAAGATTTACGTT+GGG | - | chr8_1:66999307-66999326 | Msa1208740:intron | 30.0% |
| ! | TGTTTTCAATTCCTCAACAT+CGG | + | chr8_1:66999349-66999368 | None:intergenic | 30.0% |
| ! | GAGGAATTGAAAACACTTTT+TGG | - | chr8_1:66999354-66999373 | Msa1208740:intron | 30.0% |
| ! | CTTTTGCTTATAGTTTAGTC+AGG | + | chr8_1:66999489-66999508 | None:intergenic | 30.0% |
| TGAGTAACATAGACACTAAA+AGG | + | chr8_1:66999959-66999978 | None:intergenic | 30.0% | |
| ATTATTCAGCAAACATGGTA+AGG | - | chr8_1:67000018-67000037 | Msa1208740:intron | 30.0% | |
| TTAATCTGTAACAAAGTCTC+AGG | - | chr8_1:67000055-67000074 | Msa1208740:intron | 30.0% | |
| GTAGTACTAGTATTACCATA+AGG | + | chr8_1:67000486-67000505 | None:intergenic | 30.0% | |
| ! | AATAATAGGGAATGTGGTTT+TGG | + | chr8_1:66999138-66999157 | None:intergenic | 30.0% |
| ! | ATTCTTCTGAAGATTTACGT+TGG | - | chr8_1:66999306-66999325 | Msa1208740:intron | 30.0% |
| ! | TTCTTCTGAAGATTTACGTT+GGG | - | chr8_1:66999307-66999326 | Msa1208740:intron | 30.0% |
| ! | TGTTTTCAATTCCTCAACAT+CGG | + | chr8_1:66999349-66999368 | None:intergenic | 30.0% |
| ! | GAGGAATTGAAAACACTTTT+TGG | - | chr8_1:66999354-66999373 | Msa1208740:intron | 30.0% |
| ! | CTTTTGCTTATAGTTTAGTC+AGG | + | chr8_1:66999489-66999508 | None:intergenic | 30.0% |
| TGAGTAACATAGACACTAAA+AGG | + | chr8_1:66999959-66999978 | None:intergenic | 30.0% | |
| ATTATTCAGCAAACATGGTA+AGG | - | chr8_1:67000018-67000037 | Msa1208740:intron | 30.0% | |
| TTAATCTGTAACAAAGTCTC+AGG | - | chr8_1:67000055-67000074 | Msa1208740:intron | 30.0% | |
| GTAGTACTAGTATTACCATA+AGG | + | chr8_1:67000486-67000505 | None:intergenic | 30.0% | |
| CTAATACTAGCATTGTCTTG+TGG | + | chr8_1:66998975-66998994 | None:intergenic | 35.0% | |
| TATAGCTGAATGTTGAGAGA+AGG | + | chr8_1:66999055-66999074 | None:intergenic | 35.0% | |
| ATCATGTCTATCACAATGAC+AGG | - | chr8_1:66999074-66999093 | Msa1208740:intron | 35.0% | |
| CAAATGTGAGAAGAGAAGAA+TGG | + | chr8_1:66999268-66999287 | None:intergenic | 35.0% | |
| TTCTTCTCTTCTCACATTTG+CGG | - | chr8_1:66999268-66999287 | Msa1208740:intron | 35.0% | |
| !! | ATTGAAAACACTTTTTGGGC+AGG | - | chr8_1:66999359-66999378 | Msa1208740:intron | 35.0% |
| ! | ACGCAGTACAAAATGTTTTC+AGG | - | chr8_1:66999654-66999673 | Msa1208740:CDS | 35.0% |
| TGGACACAATACGAAATGTT+TGG | - | chr8_1:66999715-66999734 | Msa1208740:CDS | 35.0% | |
| AAGGCTATGAAGAAGTTCAA+TGG | - | chr8_1:66999772-66999791 | Msa1208740:intron | 35.0% | |
| TAATTCATCCTTTGTGTGAC+AGG | - | chr8_1:66999844-66999863 | Msa1208740:intron | 35.0% | |
| TGTTGAGAGTAATGAACACT+TGG | - | chr8_1:66999991-67000010 | Msa1208740:intron | 35.0% | |
| GAGCAATTATTCAGCAAACA+TGG | - | chr8_1:67000013-67000032 | Msa1208740:intron | 35.0% | |
| !! | ATAGCTAGAGACTTGTTGTA+AGG | - | chr8_1:67000324-67000343 | Msa1208740:CDS | 35.0% |
| CTAATACTAGCATTGTCTTG+TGG | + | chr8_1:66998975-66998994 | None:intergenic | 35.0% | |
| TATAGCTGAATGTTGAGAGA+AGG | + | chr8_1:66999055-66999074 | None:intergenic | 35.0% | |
| ATCATGTCTATCACAATGAC+AGG | - | chr8_1:66999074-66999093 | Msa1208740:intron | 35.0% | |
| CAAATGTGAGAAGAGAAGAA+TGG | + | chr8_1:66999268-66999287 | None:intergenic | 35.0% | |
| TTCTTCTCTTCTCACATTTG+CGG | - | chr8_1:66999268-66999287 | Msa1208740:intron | 35.0% | |
| !! | ATTGAAAACACTTTTTGGGC+AGG | - | chr8_1:66999359-66999378 | Msa1208740:intron | 35.0% |
| ! | ACGCAGTACAAAATGTTTTC+AGG | - | chr8_1:66999654-66999673 | Msa1208740:CDS | 35.0% |
| TGGACACAATACGAAATGTT+TGG | - | chr8_1:66999715-66999734 | Msa1208740:CDS | 35.0% | |
| AAGGCTATGAAGAAGTTCAA+TGG | - | chr8_1:66999772-66999791 | Msa1208740:intron | 35.0% | |
| TAATTCATCCTTTGTGTGAC+AGG | - | chr8_1:66999844-66999863 | Msa1208740:intron | 35.0% | |
| TGTTGAGAGTAATGAACACT+TGG | - | chr8_1:66999991-67000010 | Msa1208740:intron | 35.0% | |
| GAGCAATTATTCAGCAAACA+TGG | - | chr8_1:67000013-67000032 | Msa1208740:intron | 35.0% | |
| !! | ATAGCTAGAGACTTGTTGTA+AGG | - | chr8_1:67000324-67000343 | Msa1208740:CDS | 35.0% |
| CTAGCATTGTCTTGTGGATA+AGG | + | chr8_1:66998969-66998988 | None:intergenic | 40.0% | |
| AAAGGAACACCACAACACTA+GGG | + | chr8_1:66999021-66999040 | None:intergenic | 40.0% | |
| ATGTTGAGAGAAGGATGAGA+AGG | + | chr8_1:66999046-66999065 | None:intergenic | 40.0% | |
| TTGGTGTGCAAGAGTGAATT+AGG | + | chr8_1:66999119-66999138 | None:intergenic | 40.0% | |
| ATGTGAGAAGAGAAGAATGG+CGG | + | chr8_1:66999265-66999284 | None:intergenic | 40.0% | |
| AACTTCTTCAACGGTACTCA+TGG | + | chr8_1:66999749-66999768 | None:intergenic | 40.0% | |
| TACCGTTGAAGAAGTTGAGA+AGG | - | chr8_1:66999753-66999772 | Msa1208740:CDS | 40.0% | |
| AGCCTTCTCAACTTCTTCAA+CGG | + | chr8_1:66999758-66999777 | None:intergenic | 40.0% | |
| AGCTAATTCCTGTCACACAA+AGG | + | chr8_1:66999855-66999874 | None:intergenic | 40.0% | |
| TTTGTGTGACAGGAATTAGC+TGG | - | chr8_1:66999854-66999873 | Msa1208740:CDS | 40.0% | |
| TCTATGTTACTCAGTTGCCA+CGG | - | chr8_1:66999966-66999985 | Msa1208740:intron | 40.0% | |
| AATGTCATTGCTGCTCTTCA+CGG | - | chr8_1:67000130-67000149 | Msa1208740:intron | 40.0% | |
| CTTCACGGTCAGGTAAATAT+TGG | - | chr8_1:67000145-67000164 | Msa1208740:intron | 40.0% | |
| TGTTGTTAGCATGACCCTTA+TGG | - | chr8_1:67000468-67000487 | Msa1208740:CDS | 40.0% | |
| CTAGCATTGTCTTGTGGATA+AGG | + | chr8_1:66998969-66998988 | None:intergenic | 40.0% | |
| AAAGGAACACCACAACACTA+GGG | + | chr8_1:66999021-66999040 | None:intergenic | 40.0% | |
| ATGTTGAGAGAAGGATGAGA+AGG | + | chr8_1:66999046-66999065 | None:intergenic | 40.0% | |
| TTGGTGTGCAAGAGTGAATT+AGG | + | chr8_1:66999119-66999138 | None:intergenic | 40.0% | |
| ATGTGAGAAGAGAAGAATGG+CGG | + | chr8_1:66999265-66999284 | None:intergenic | 40.0% | |
| AACTTCTTCAACGGTACTCA+TGG | + | chr8_1:66999749-66999768 | None:intergenic | 40.0% | |
| TACCGTTGAAGAAGTTGAGA+AGG | - | chr8_1:66999753-66999772 | Msa1208740:CDS | 40.0% | |
| AGCCTTCTCAACTTCTTCAA+CGG | + | chr8_1:66999758-66999777 | None:intergenic | 40.0% | |
| AGCTAATTCCTGTCACACAA+AGG | + | chr8_1:66999855-66999874 | None:intergenic | 40.0% | |
| TTTGTGTGACAGGAATTAGC+TGG | - | chr8_1:66999854-66999873 | Msa1208740:CDS | 40.0% | |
| TCTATGTTACTCAGTTGCCA+CGG | - | chr8_1:66999966-66999985 | Msa1208740:intron | 40.0% | |
| AATGTCATTGCTGCTCTTCA+CGG | - | chr8_1:67000130-67000149 | Msa1208740:intron | 40.0% | |
| CTTCACGGTCAGGTAAATAT+TGG | - | chr8_1:67000145-67000164 | Msa1208740:intron | 40.0% | |
| TGTTGTTAGCATGACCCTTA+TGG | - | chr8_1:67000468-67000487 | Msa1208740:CDS | 40.0% | |
| CAAATCCAACCCTAGTGTTG+TGG | - | chr8_1:66999009-66999028 | Msa1208740:three_prime_UTR | 45.0% | |
| GAAAGGAACACCACAACACT+AGG | + | chr8_1:66999022-66999041 | None:intergenic | 45.0% | |
| GAGAAGGATGAGAAGGAGAA+AGG | + | chr8_1:66999039-66999058 | None:intergenic | 45.0% | |
| !! | GGGTTTTGTAGCTGCTTGAA+AGG | + | chr8_1:66999176-66999195 | None:intergenic | 45.0% |
| TGTGAGAAGAGAAGAATGGC+GGG | + | chr8_1:66999264-66999283 | None:intergenic | 45.0% | |
| TCTCTTCTCACATTTGCGGT+TGG | - | chr8_1:66999272-66999291 | Msa1208740:intron | 45.0% | |
| !! | ACATTTGCGGTTGGTGATGT+TGG | - | chr8_1:66999281-66999300 | Msa1208740:intron | 45.0% |
| GACTCAAGATACCGATGTTG+AGG | - | chr8_1:66999335-66999354 | Msa1208740:intron | 45.0% | |
| !! | AAAACACTTTTTGGGCAGGC+TGG | - | chr8_1:66999363-66999382 | Msa1208740:intron | 45.0% |
| !! | AAACACTTTTTGGGCAGGCT+GGG | - | chr8_1:66999364-66999383 | Msa1208740:intron | 45.0% |
| CACTACCTGATCTCCCAAAA+CGG | - | chr8_1:66999915-66999934 | Msa1208740:CDS | 45.0% | |
| AAAGGAGAATCAAATGCGCG+TGG | + | chr8_1:66999941-66999960 | None:intergenic | 45.0% | |
| TCATTACTCTCAACACTCCG+TGG | + | chr8_1:66999986-67000005 | None:intergenic | 45.0% | |
| AAAGTCTCAGGTCGATCACA+GGG | - | chr8_1:67000067-67000086 | Msa1208740:intron | 45.0% | |
| TAACTCAACAACTCCCATGC+TGG | + | chr8_1:67000580-67000599 | None:intergenic | 45.0% | |
| CAAATCCAACCCTAGTGTTG+TGG | - | chr8_1:66999009-66999028 | Msa1208740:three_prime_UTR | 45.0% | |
| GAAAGGAACACCACAACACT+AGG | + | chr8_1:66999022-66999041 | None:intergenic | 45.0% | |
| GAGAAGGATGAGAAGGAGAA+AGG | + | chr8_1:66999039-66999058 | None:intergenic | 45.0% | |
| !! | GGGTTTTGTAGCTGCTTGAA+AGG | + | chr8_1:66999176-66999195 | None:intergenic | 45.0% |
| TGTGAGAAGAGAAGAATGGC+GGG | + | chr8_1:66999264-66999283 | None:intergenic | 45.0% | |
| TCTCTTCTCACATTTGCGGT+TGG | - | chr8_1:66999272-66999291 | Msa1208740:intron | 45.0% | |
| !! | ACATTTGCGGTTGGTGATGT+TGG | - | chr8_1:66999281-66999300 | Msa1208740:intron | 45.0% |
| GACTCAAGATACCGATGTTG+AGG | - | chr8_1:66999335-66999354 | Msa1208740:intron | 45.0% | |
| !! | AAAACACTTTTTGGGCAGGC+TGG | - | chr8_1:66999363-66999382 | Msa1208740:intron | 45.0% |
| !! | AAACACTTTTTGGGCAGGCT+GGG | - | chr8_1:66999364-66999383 | Msa1208740:intron | 45.0% |
| CACTACCTGATCTCCCAAAA+CGG | - | chr8_1:66999915-66999934 | Msa1208740:CDS | 45.0% | |
| AAAGGAGAATCAAATGCGCG+TGG | + | chr8_1:66999941-66999960 | None:intergenic | 45.0% | |
| TCATTACTCTCAACACTCCG+TGG | + | chr8_1:66999986-67000005 | None:intergenic | 45.0% | |
| AAAGTCTCAGGTCGATCACA+GGG | - | chr8_1:67000067-67000086 | Msa1208740:intron | 45.0% | |
| TAACTCAACAACTCCCATGC+TGG | + | chr8_1:67000580-67000599 | None:intergenic | 45.0% | |
| GAACACCACAACACTAGGGT+TGG | + | chr8_1:66999017-66999036 | None:intergenic | 50.0% | |
| CAAAGTCTCAGGTCGATCAC+AGG | - | chr8_1:67000066-67000085 | Msa1208740:intron | 50.0% | |
| TCAGGTCGATCACAGGGTTA+TGG | - | chr8_1:67000073-67000092 | Msa1208740:intron | 50.0% | |
| ! | AAAGGGGCATACACCAGCAT+GGG | - | chr8_1:67000564-67000583 | Msa1208740:five_prime_UTR | 50.0% |
| GAACACCACAACACTAGGGT+TGG | + | chr8_1:66999017-66999036 | None:intergenic | 50.0% | |
| CAAAGTCTCAGGTCGATCAC+AGG | - | chr8_1:67000066-67000085 | Msa1208740:intron | 50.0% | |
| TCAGGTCGATCACAGGGTTA+TGG | - | chr8_1:67000073-67000092 | Msa1208740:intron | 50.0% | |
| ! | AAAGGGGCATACACCAGCAT+GGG | - | chr8_1:67000564-67000583 | Msa1208740:five_prime_UTR | 50.0% |
| !! | ATGGCGGGTTCTTCTCCTTC+TGG | + | chr8_1:66999249-66999268 | None:intergenic | 55.0% |
| TGGGACTGTAGTGCATGCTG+AGG | - | chr8_1:66999383-66999402 | Msa1208740:intron | 55.0% | |
| !! | CAAATGCGCGTGGCCGTTTT+GGG | + | chr8_1:66999931-66999950 | None:intergenic | 55.0% |
| ! | TCAAATGCGCGTGGCCGTTT+TGG | + | chr8_1:66999932-66999951 | None:intergenic | 55.0% |
| CATTGCTGCTCTTCACGGTC+AGG | - | chr8_1:67000135-67000154 | Msa1208740:intron | 55.0% | |
| ! | GAAAGGGGCATACACCAGCA+TGG | - | chr8_1:67000563-67000582 | Msa1208740:five_prime_UTR | 55.0% |
| !! | ATGGCGGGTTCTTCTCCTTC+TGG | + | chr8_1:66999249-66999268 | None:intergenic | 55.0% |
| TGGGACTGTAGTGCATGCTG+AGG | - | chr8_1:66999383-66999402 | Msa1208740:intron | 55.0% | |
| !! | CAAATGCGCGTGGCCGTTTT+GGG | + | chr8_1:66999931-66999950 | None:intergenic | 55.0% |
| ! | TCAAATGCGCGTGGCCGTTT+TGG | + | chr8_1:66999932-66999951 | None:intergenic | 55.0% |
| CATTGCTGCTCTTCACGGTC+AGG | - | chr8_1:67000135-67000154 | Msa1208740:intron | 55.0% | |
| ! | GAAAGGGGCATACACCAGCA+TGG | - | chr8_1:67000563-67000582 | Msa1208740:five_prime_UTR | 55.0% |
| GCGGGTTCTTCTCCTTCTGG+CGG | + | chr8_1:66999246-66999265 | None:intergenic | 60.0% | |
| !!! | CGTGGCCGTTTTGGGAGATC+AGG | + | chr8_1:66999923-66999942 | None:intergenic | 60.0% |
| GCGGGTTCTTCTCCTTCTGG+CGG | + | chr8_1:66999246-66999265 | None:intergenic | 60.0% | |
| !!! | CGTGGCCGTTTTGGGAGATC+AGG | + | chr8_1:66999923-66999942 | None:intergenic | 60.0% |
| CTGGCGGTGAGAGAGAGCGA+GGG | + | chr8_1:66999230-66999249 | None:intergenic | 65.0% | |
| TCTGGCGGTGAGAGAGAGCG+AGG | + | chr8_1:66999231-66999250 | None:intergenic | 65.0% | |
| CGCTCTCTCTCACCGCCAGA+AGG | - | chr8_1:66999231-66999250 | Msa1208740:intron | 65.0% | |
| CTGGCGGTGAGAGAGAGCGA+GGG | + | chr8_1:66999230-66999249 | None:intergenic | 65.0% | |
| TCTGGCGGTGAGAGAGAGCG+AGG | + | chr8_1:66999231-66999250 | None:intergenic | 65.0% | |
| CGCTCTCTCTCACCGCCAGA+AGG | - | chr8_1:66999231-66999250 | Msa1208740:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 66998920 | 67000732 | 66998920 | ID=Msa1208740;Name=Msa1208740 |
| chr8_1 | mRNA | 66998920 | 67000732 | 66998920 | ID=Msa1208740-mRNA-1;Parent=Msa1208740;Name=Msa1208740-mRNA-1;_AED=0.32;_eAED=0.32;_QI=242|1|1|1|1|1|4|118|226 |
| chr8_1 | exon | 66998920 | 66999088 | 66998920 | ID=Msa1208740-mRNA-1:exon:22102;Parent=Msa1208740-mRNA-1 |
| chr8_1 | exon | 66999496 | 66999786 | 66999496 | ID=Msa1208740-mRNA-1:exon:22101;Parent=Msa1208740-mRNA-1 |
| chr8_1 | exon | 66999854 | 66999949 | 66999854 | ID=Msa1208740-mRNA-1:exon:22100;Parent=Msa1208740-mRNA-1 |
| chr8_1 | exon | 67000248 | 67000732 | 67000248 | ID=Msa1208740-mRNA-1:exon:22099;Parent=Msa1208740-mRNA-1 |
| chr8_1 | five_prime_UTR | 67000491 | 67000732 | 67000491 | ID=Msa1208740-mRNA-1:five_prime_utr;Parent=Msa1208740-mRNA-1 |
| chr8_1 | CDS | 67000248 | 67000490 | 67000248 | ID=Msa1208740-mRNA-1:cds;Parent=Msa1208740-mRNA-1 |
| chr8_1 | CDS | 66999854 | 66999949 | 66999854 | ID=Msa1208740-mRNA-1:cds;Parent=Msa1208740-mRNA-1 |
| chr8_1 | CDS | 66999496 | 66999786 | 66999496 | ID=Msa1208740-mRNA-1:cds;Parent=Msa1208740-mRNA-1 |
| chr8_1 | CDS | 66999038 | 66999088 | 66999038 | ID=Msa1208740-mRNA-1:cds;Parent=Msa1208740-mRNA-1 |
| chr8_1 | three_prime_UTR | 66998920 | 66999037 | 66998920 | ID=Msa1208740-mRNA-1:three_prime_utr;Parent=Msa1208740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
