AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1210210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210210 MtrunA17_Chr4g0059471 71.587 271 14 3 1 208 1 271 4.83e-134 377
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210210 AT5G50110.1 46.124 258 74 4 14 208 37 292 3.91e-69 213
Msa1210210 AT5G50110.2 45.192 208 51 4 64 208 1 208 2.02e-49 160

Find 106 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATGAATTTGGTCTTTC+TGG 0.146446 8_1:-68992147 None:intergenic
AACTGTTTCTAGGGGTATTT+TGG 0.152923 8_1:+68991867 Msa1210210:five_prime_UTR
ATCATACTACTCGTATAATT+AGG 0.186329 8_1:+68997524 Msa1210210:three_prime_UTR
TGAAAACGCCATCAAGAAAA+TGG 0.236105 8_1:+68995588 Msa1210210:CDS
GACAGAGAGTTGTATATTTC+CGG 0.248885 8_1:-68992075 None:intergenic
GTCTACCGTTGGTTCGTGTT+GGG 0.257709 8_1:+68993806 Msa1210210:CDS
AGTGACAATTAACTGTTTCT+AGG 0.265399 8_1:+68991857 None:intergenic
TTTACTTGTTATTATTATCT+TGG 0.274054 8_1:+68997355 Msa1210210:three_prime_UTR
TATGATTTACTTTGAGCCTT+TGG 0.299360 8_1:+68997183 Msa1210210:three_prime_UTR
CCTGTGATTTATTATTATTA+AGG 0.311287 8_1:+68997461 Msa1210210:three_prime_UTR
GGTCTTTCTGGCGAGAGGTT+AGG 0.317501 8_1:-68992135 None:intergenic
GGAACTGGTGCAGGTCTTCC+TGG 0.323742 8_1:+68992418 Msa1210210:CDS
ACGAGGGAACCATTCTTTCT+TGG 0.344725 8_1:+68991891 Msa1210210:five_prime_UTR
TCATACTACTCGTATAATTA+GGG 0.360734 8_1:+68997525 Msa1210210:three_prime_UTR
TCTTACAATGGTTCTTTAGT+TGG 0.360950 8_1:-68996755 None:intergenic
TATAGGACCAAAAGGACTTT+TGG 0.361833 8_1:+68997150 Msa1210210:three_prime_UTR
GTAATCACCAAAAGTCCTTT+TGG 0.369666 8_1:-68997157 None:intergenic
GTCTTTCTGGCGAGAGGTTA+GGG 0.371857 8_1:-68992134 None:intergenic
CTGTGATTTATTATTATTAA+GGG 0.380875 8_1:+68997462 Msa1210210:three_prime_UTR
TTTGAGCACTGATATGATCT+TGG 0.381044 8_1:-68997686 None:intergenic
AGTTGGTGTCCCAGGAAAAC+GGG 0.388602 8_1:-68996738 None:intergenic
ACAGCAGTACGCTGACCATA+TGG 0.393838 8_1:-68996677 None:intergenic
GAGAGGTTAGGGTTACGAAA+TGG 0.402321 8_1:-68992123 None:intergenic
TGTCTACCGTTGGTTCGTGT+TGG 0.406933 8_1:+68993805 Msa1210210:CDS
CCTATCCTTCACTCAGGCTT+AGG 0.414730 8_1:-68997718 None:intergenic
AGAGGTTAGGGTTACGAAAT+GGG 0.416350 8_1:-68992122 None:intergenic
TCCTATATGAGCAGAAAATC+AGG 0.418245 8_1:-68996884 None:intergenic
CTCATATCATATCTTTCAGT+TGG 0.424558 8_1:+68997569 Msa1210210:three_prime_UTR
TGTCAACGTAGAGATGAATT+TGG 0.424734 8_1:-68992156 None:intergenic
CATTCGTGATTGTCAATATG+TGG 0.427334 8_1:+68997597 Msa1210210:three_prime_UTR
ACGTTGACACACTTCTTCAA+TGG 0.428268 8_1:+68992170 Msa1210210:CDS
TAAAGAAGTGAATGAAGTTA+TGG 0.428995 8_1:+68992294 Msa1210210:CDS
AAGATGGATGCTCACTCTAT+TGG 0.433034 8_1:+68996774 Msa1210210:exon
GAAAACGGGGATATTTCATT+GGG 0.441381 8_1:-68996724 None:intergenic
CGCGGTGGGTTGAAGTGAAA+TGG 0.442952 8_1:+68991994 Msa1210210:exon
GTGACAATTAACTGTTTCTA+GGG 0.443306 8_1:+68991858 Msa1210210:five_prime_UTR
GGAAAACGGGGATATTTCAT+TGG 0.445243 8_1:-68996725 None:intergenic
GATAATTGCCATCACACATA+TGG 0.451791 8_1:-68997294 None:intergenic
TACCTCAGGATCGTGACCTT+TGG 0.461899 8_1:-68993845 None:intergenic
GTGGAATCGCAAAGCCCATA+TGG 0.466111 8_1:+68996662 Msa1210210:intron
TTCTTATATATAGGACCAAA+AGG 0.468496 8_1:+68997142 Msa1210210:three_prime_UTR
AACAAGTAAACAAAGATAGA+AGG 0.470691 8_1:-68997342 None:intergenic
CCTAAGCCTGAGTGAAGGAT+AGG 0.473791 8_1:+68997718 Msa1210210:three_prime_UTR
GGTTCTTTAGTTGGTGTCCC+AGG 0.475939 8_1:-68996746 None:intergenic
TAGTTGGTGTCCCAGGAAAA+CGG 0.477831 8_1:-68996739 None:intergenic
TTGTATATTTCCGGTGCGTA+AGG 0.488531 8_1:-68992066 None:intergenic
TCTACCGTTGGTTCGTGTTG+GGG 0.489555 8_1:+68993807 Msa1210210:CDS
AAACTCGTTGATGTAGGAAC+TGG 0.493161 8_1:+68992403 Msa1210210:CDS
CTGATATAATTATCGCTCAA+TGG 0.494805 8_1:-68992352 None:intergenic
TTGATTTGTTCTCAACTCCC+TGG 0.495831 8_1:+68997414 Msa1210210:three_prime_UTR
AGCTGAGTATTGTCTACCGT+TGG 0.498156 8_1:+68993795 Msa1210210:intron
GGTCGCTCGTGCACATCATA+CGG 0.501619 8_1:-68996863 None:intergenic
GAAGCAAAATCCACTACAAA+CGG 0.502222 8_1:+68991925 Msa1210210:five_prime_UTR
AACGAGTTTAATCTTATCGA+TGG 0.503072 8_1:-68992389 None:intergenic
GAAAACGCCATCAAGAAAAT+GGG 0.504470 8_1:+68995589 Msa1210210:CDS
GAGGTTAGGGTTACGAAATG+GGG 0.509056 8_1:-68992121 None:intergenic
CAAGATATGCATAATCAGCC+AGG 0.515323 8_1:-68997432 None:intergenic
AAGATTAAACTCGTTGATGT+AGG 0.520131 8_1:+68992397 Msa1210210:CDS
CAACAGTAGTTGAGTGCAGC+GGG 0.521542 8_1:+68991957 Msa1210210:five_prime_UTR
TAGACTGACTTTGAAACTCA+TGG 0.526077 8_1:+68997488 Msa1210210:three_prime_UTR
CTACCGTTGGTTCGTGTTGG+GGG 0.530014 8_1:+68993808 Msa1210210:CDS
ATTCGTGATTGTCAATATGT+GGG 0.532915 8_1:+68997598 Msa1210210:three_prime_UTR
ACTAAAGAACCATTGTAAGA+TGG 0.535093 8_1:+68996758 Msa1210210:exon
CGGGGATATTTCATTGGGGT+GGG 0.541919 8_1:-68996719 None:intergenic
TTGAACCATTGTCTGAGAGA+AGG 0.544739 8_1:+68996838 Msa1210210:three_prime_UTR
TCATTATTGCAAGTATGCTC+AGG 0.550979 8_1:+68995616 Msa1210210:CDS
ACGGGGATATTTCATTGGGG+TGG 0.555509 8_1:-68996720 None:intergenic
GCAATGGCTAAAACTACTCC+AGG 0.556751 8_1:-68992436 None:intergenic
CGGGTCCTTCTCTCAGACAA+TGG 0.557952 8_1:-68996843 None:intergenic
CTTTGCCCTATCCTTCACTC+AGG 0.558638 8_1:-68997724 None:intergenic
TACTGCTGTCATATGTCTGA+AGG 0.559673 8_1:+68996691 Msa1210210:CDS
CAGCAGTACGCTGACCATAT+GGG 0.560427 8_1:-68996676 None:intergenic
CACACTTCTTCAATGGAACA+AGG 0.562214 8_1:+68992177 Msa1210210:CDS
CCTTAATAATAATAAATCAC+AGG 0.562249 8_1:-68997461 None:intergenic
TCTACAAACACCTTACGCAC+CGG 0.562620 8_1:+68992056 Msa1210210:CDS
TATGATCTTGGCTTTCAACA+TGG 0.562656 8_1:-68997674 None:intergenic
GTCGCTCGTGCACATCATAC+GGG 0.588578 8_1:-68996862 None:intergenic
AGGTTCATCAATGTCTCCAA+AGG 0.589384 8_1:-68997199 None:intergenic
ATAACGTGAAAGCGCGCGGT+GGG 0.589452 8_1:+68991980 Msa1210210:five_prime_UTR
GGAGACATTGATGAACCTGA+AGG 0.594216 8_1:+68997204 Msa1210210:three_prime_UTR
CTAAGCCTGAGTGAAGGATA+GGG 0.594321 8_1:+68997719 Msa1210210:three_prime_UTR
CACTTGACCTGGTCTAGCAA+TGG 0.594471 8_1:-68992452 None:intergenic
CACATATTGACAATCACGAA+TGG 0.598174 8_1:-68997596 None:intergenic
AATTTGGTCTTTCTGGCGAG+AGG 0.598274 8_1:-68992140 None:intergenic
GGAATGTTTATTGCTGCCAA+AGG 0.598992 8_1:+68993829 Msa1210210:CDS
ATAGGATTGGGTCAGAAGAA+CGG 0.611975 8_1:-68996807 None:intergenic
GTGTTGCTAGCCGTTTGTAG+TGG 0.624500 8_1:-68991935 None:intergenic
CAATGGAGGCAAAATTGCGA+GGG 0.627212 8_1:-68992335 None:intergenic
GTTGATGTAGGAACTGGTGC+AGG 0.629428 8_1:+68992409 Msa1210210:CDS
AATCTCATGTGACAATGACA+AGG 0.631485 8_1:+68997236 Msa1210210:three_prime_UTR
GATAACGTGAAAGCGCGCGG+TGG 0.639703 8_1:+68991979 Msa1210210:five_prime_UTR
AGTTATGGAAAGACACATTG+AGG 0.642256 8_1:+68992309 Msa1210210:CDS
TCAATGGAGGCAAAATTGCG+AGG 0.642917 8_1:-68992336 None:intergenic
ATATAATTATCGCTCAATGG+AGG 0.646223 8_1:-68992349 None:intergenic
TGCCAAAGGTCACGATCCTG+AGG 0.646495 8_1:+68993843 Msa1210210:CDS
AGGTTAGGGTTACGAAATGG+GGG 0.648178 8_1:-68992120 None:intergenic
AAGATATGCATAATCAGCCA+GGG 0.655520 8_1:-68997431 None:intergenic
ATCTCATGTGACAATGACAA+GGG 0.658652 8_1:+68997237 Msa1210210:three_prime_UTR
TATGATATGAGAGTAAACGT+TGG 0.663209 8_1:-68997557 None:intergenic
AAGAGCCTAAGCCTGAGTGA+AGG 0.665069 8_1:+68997713 Msa1210210:three_prime_UTR
GTTGGTGTCCCAGGAAAACG+GGG 0.669785 8_1:-68996737 None:intergenic
GTACGTTGCCATATGTGTGA+TGG 0.670690 8_1:+68997286 Msa1210210:three_prime_UTR
TGACAATTAACTGTTTCTAG+GGG 0.671633 8_1:+68991859 Msa1210210:five_prime_UTR
AGTGAGCATCCATCTTACAA+TGG 0.672140 8_1:-68996767 None:intergenic
ACAACAGTAGTTGAGTGCAG+CGG 0.682302 8_1:+68991956 Msa1210210:five_prime_UTR
AAAACGGGGATATTTCATTG+GGG 0.753527 8_1:-68996723 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATAGTTTTTTATTCA+GGG - chr8_1:68994216-68994235 None:intergenic 10.0%
!!! TTAAATATAGTTTTTTATTC+AGG - chr8_1:68994217-68994236 None:intergenic 10.0%
!! AATAAATAAACAATAATAAG+AGG - chr8_1:68995083-68995102 None:intergenic 10.0%
!!! TTTTTTTTATATATATGACA+AGG - chr8_1:68997045-68997064 None:intergenic 10.0%
!!! TAAAGTACTATTAAATTATC+AGG - chr8_1:68993345-68993364 None:intergenic 15.0%
!!! ATCTTGAATATTTGATAATA+CGG - chr8_1:68993427-68993446 None:intergenic 15.0%
!! AATATTTAGAAAAGAGAAAA+CGG + chr8_1:68994171-68994190 Msa1210210:intron 15.0%
!!! AAATATAGTTTTTTATTCAG+GGG - chr8_1:68994215-68994234 None:intergenic 15.0%
!!! ATAACTGATTTTTAAATTAC+TGG - chr8_1:68994334-68994353 None:intergenic 15.0%
!!! GTTTTTTCAATTGAAAATTA+AGG + chr8_1:68994520-68994539 Msa1210210:intron 15.0%
!! TTATTCTTCAATACATATTA+TGG + chr8_1:68995098-68995117 Msa1210210:intron 15.0%
!!! TTATCCATGTTTTTAAAAAT+TGG - chr8_1:68995246-68995265 None:intergenic 15.0%
!!! TTTTTAAAAACATGGATAAA+AGG + chr8_1:68995247-68995266 Msa1210210:intron 15.0%
!! AATGTATTTGGTTAAAAAAT+TGG - chr8_1:68996311-68996330 None:intergenic 15.0%
!! AATAGAAATAATCAACATAA+GGG - chr8_1:68996550-68996569 None:intergenic 15.0%
!!! TCAAACTTTTTCTTATATAT+AGG + chr8_1:68997133-68997152 Msa1210210:three_prime_UTR 15.0%
!!! TTTACTTGTTATTATTATCT+TGG + chr8_1:68997355-68997374 Msa1210210:three_prime_UTR 15.0%
!! CTGTGATTTATTATTATTAA+GGG + chr8_1:68997462-68997481 Msa1210210:three_prime_UTR 15.0%
!!! TAAATTTTGATGTGTGATTT+AGG + chr8_1:68992534-68992553 Msa1210210:intron 20.0%
!! AGTTTATGAAAACAGTTTAT+AGG - chr8_1:68992712-68992731 None:intergenic 20.0%
!! AAATTAAATTGGTCATAATG+TGG - chr8_1:68993558-68993577 None:intergenic 20.0%
!!! TTCAAATAAGATTTAAGACT+GGG - chr8_1:68994030-68994049 None:intergenic 20.0%
!!! ATTCAAATAAGATTTAAGAC+TGG - chr8_1:68994031-68994050 None:intergenic 20.0%
!!! TTTTCAATTGAAAATTAAGG+AGG + chr8_1:68994523-68994542 Msa1210210:intron 20.0%
!! CAGTAATATATTGTTGAAAA+GGG - chr8_1:68994897-68994916 None:intergenic 20.0%
!!! TAGTAACACAATATTTTTGT+TGG - chr8_1:68995004-68995023 None:intergenic 20.0%
!!! ATGTCCAATTTTTAAAAACA+TGG + chr8_1:68995239-68995258 Msa1210210:intron 20.0%
!! TTACACACAAAATTAATAGA+TGG - chr8_1:68995538-68995557 None:intergenic 20.0%
!!! AATTTTGTGTGTAATAAACT+CGG + chr8_1:68995544-68995563 Msa1210210:intron 20.0%
!!! TTTTAGGAATAAAACAAACT+TGG - chr8_1:68995691-68995710 None:intergenic 20.0%
!!! AAGTTTGTTTTATTCCTAAA+AGG + chr8_1:68995690-68995709 Msa1210210:intron 20.0%
!! TATTAAAATCCTATATTTGC+AGG - chr8_1:68995761-68995780 None:intergenic 20.0%
!! ATATTCAAAAATCTGTATGT+TGG - chr8_1:68995840-68995859 None:intergenic 20.0%
!!! ATAGAAGATAACTTTTTGTT+AGG + chr8_1:68996084-68996103 Msa1210210:intron 20.0%
!!! AATTTGCTGTTTTATTTCAT+AGG + chr8_1:68996124-68996143 Msa1210210:intron 20.0%
!! ATTATGAGTTTCTTTACTTA+AGG - chr8_1:68996164-68996183 None:intergenic 20.0%
!! TTATACAATACAATGGATAT+AGG - chr8_1:68996187-68996206 None:intergenic 20.0%
!! AATTTCGTTATACAATACAA+TGG - chr8_1:68996194-68996213 None:intergenic 20.0%
!! TCAACAAAAGTTAATGTATT+TGG - chr8_1:68996323-68996342 None:intergenic 20.0%
!! AATATAATCAAAAGTCAAAC+AGG - chr8_1:68996485-68996504 None:intergenic 20.0%
!!! TTTTTAGGAATAGTTAATTC+TGG + chr8_1:68996519-68996538 Msa1210210:intron 20.0%
!! GAATAGAAATAATCAACATA+AGG - chr8_1:68996551-68996570 None:intergenic 20.0%
!! CCTTAATAATAATAAATCAC+AGG - chr8_1:68997464-68997483 None:intergenic 20.0%
!! CCTGTGATTTATTATTATTA+AGG + chr8_1:68997461-68997480 Msa1210210:three_prime_UTR 20.0%
! TAAAGAAGTGAATGAAGTTA+TGG + chr8_1:68992294-68992313 Msa1210210:CDS 25.0%
! AATAACACTTTGGTTACAAA+AGG - chr8_1:68992503-68992522 None:intergenic 25.0%
!! ACAATTTATTTGCAGCTTTT+AGG + chr8_1:68992602-68992621 Msa1210210:intron 25.0%
!! TTATTTTCATAAGTTCTCCA+GGG - chr8_1:68992737-68992756 None:intergenic 25.0%
!! CAGATTGACTTTATTCTATT+TGG - chr8_1:68992860-68992879 None:intergenic 25.0%
! ATCGATAAACTAATCAAAAC+TGG + chr8_1:68993020-68993039 Msa1210210:intron 25.0%
! ATTCAATGTGTTTCTTGAAA+TGG + chr8_1:68993207-68993226 Msa1210210:intron 25.0%
!! TAAATACTTAACTTGATCCT+TGG + chr8_1:68993373-68993392 Msa1210210:intron 25.0%
!! TTGAATATTTGATAATACGG+AGG - chr8_1:68993424-68993443 None:intergenic 25.0%
!!! TGCAATTTTAAGTATCATTG+TGG - chr8_1:68993451-68993470 None:intergenic 25.0%
! GGACTAGAATGAAATTAAAT+TGG - chr8_1:68993569-68993588 None:intergenic 25.0%
! AAATTAGTCCTTTGAATTGT+AGG - chr8_1:68993694-68993713 None:intergenic 25.0%
!! AAGTGTTATTATGGAAGTAA+AGG - chr8_1:68993728-68993747 None:intergenic 25.0%
!! AATAACCACAAGTGTTATTA+TGG - chr8_1:68993737-68993756 None:intergenic 25.0%
!!! TTGTGGTTATTTTCTTACTA+TGG + chr8_1:68993746-68993765 Msa1210210:intron 25.0%
! TTTACTATTTAGTGATGCTT+CGG + chr8_1:68993923-68993942 Msa1210210:intron 25.0%
! TTTATTAACCACAAGAATTG+TGG + chr8_1:68993985-68994004 Msa1210210:intron 25.0%
! TTATTAACCACAAGAATTGT+GGG + chr8_1:68993986-68994005 Msa1210210:intron 25.0%
! ATATGAAAATTAGATCAGAC+TGG + chr8_1:68994239-68994258 Msa1210210:intron 25.0%
!! TCAACAGAGAAATTGTATTT+TGG - chr8_1:68994436-68994455 None:intergenic 25.0%
! TTCAATTGAAAAAACAAGAG+AGG - chr8_1:68994515-68994534 None:intergenic 25.0%
! TTCAATTGAAAAAACAAGAG+AGG - chr8_1:68994515-68994534 None:intergenic 25.0%
!!! ATTCTCTCTTTCAAGTTTTA+AGG + chr8_1:68994618-68994637 Msa1210210:intron 25.0%
!!! TTCTCTCTTTCAAGTTTTAA+GGG + chr8_1:68994619-68994638 Msa1210210:intron 25.0%
! AACAAGTTAACAACTTTAAG+TGG - chr8_1:68994789-68994808 None:intergenic 25.0%
! CCAGTAATATATTGTTGAAA+AGG - chr8_1:68994898-68994917 None:intergenic 25.0%
!! CCTTTTCAACAATATATTAC+TGG + chr8_1:68994895-68994914 Msa1210210:intron 25.0%
! AATCAGACCGATATTATTAA+GGG + chr8_1:68994961-68994980 Msa1210210:intron 25.0%
! TTTGTTGGTCATATTTATGT+GGG - chr8_1:68994989-68995008 None:intergenic 25.0%
!! TTTTGTTGGTCATATTTATG+TGG - chr8_1:68994990-68995009 None:intergenic 25.0%
!! CATATTATGGTTCTTTTAAG+TGG + chr8_1:68995111-68995130 Msa1210210:intron 25.0%
! AAATTGGACATGAAATTATC+CGG - chr8_1:68995230-68995249 None:intergenic 25.0%
!!! CATGAAGTTTTATATTGACA+CGG - chr8_1:68995364-68995383 None:intergenic 25.0%
! CACACTATCATTTAATGATT+TGG + chr8_1:68995421-68995440 Msa1210210:intron 25.0%
!! ACTATCATTTAATGATTTGG+TGG + chr8_1:68995424-68995443 Msa1210210:intron 25.0%
! ATATAGCAAGAGTTAAGTTA+CGG - chr8_1:68995657-68995676 None:intergenic 25.0%
!!! ATAGCATTTTGATTCCTTTT+AGG - chr8_1:68995707-68995726 None:intergenic 25.0%
!! AATATATATTTTCAGTGACG+TGG + chr8_1:68995777-68995796 Msa1210210:intron 25.0%
!!! TTTTTTACTCAAAAAATGCG+AGG + chr8_1:68995962-68995981 Msa1210210:intron 25.0%
!! TTTTTACTCAAAAAATGCGA+GGG + chr8_1:68995963-68995982 Msa1210210:intron 25.0%
!!! ACTGATAGTTTTAGTTGAAA+TGG + chr8_1:68996047-68996066 Msa1210210:intron 25.0%
! TTGTATAACGAAATTCTAGT+TGG + chr8_1:68996199-68996218 Msa1210210:intron 25.0%
!! CCTATTTACAAGAGAAATTT+TGG - chr8_1:68996346-68996365 None:intergenic 25.0%
! CCAAAATTTCTCTTGTAAAT+AGG + chr8_1:68996343-68996362 Msa1210210:intron 25.0%
! ATAGTGAAATTTAGTCACTT+AGG - chr8_1:68996433-68996452 None:intergenic 25.0%
! TCTGTTTATTGTTTCATCAT+CGG + chr8_1:68996590-68996609 Msa1210210:intron 25.0%
! TCAAAAAAAGTGATAGGATT+GGG - chr8_1:68996822-68996841 None:intergenic 25.0%
! TTCAAAAAAAGTGATAGGAT+TGG - chr8_1:68996823-68996842 None:intergenic 25.0%
! AATGGTTCAAAAAAAGTGAT+AGG - chr8_1:68996828-68996847 None:intergenic 25.0%
!!! AGTGTTGTTTTTTGAATAGT+AGG + chr8_1:68996937-68996956 Msa1210210:three_prime_UTR 25.0%
!!! GTGTTGTTTTTTGAATAGTA+GGG + chr8_1:68996938-68996957 Msa1210210:three_prime_UTR 25.0%
!!! TGTTGTTTTTTGAATAGTAG+GGG + chr8_1:68996939-68996958 Msa1210210:three_prime_UTR 25.0%
! TTCTTATATATAGGACCAAA+AGG + chr8_1:68997142-68997161 Msa1210210:three_prime_UTR 25.0%
!!! AGCTTTTAAAACATACTTCT+AGG - chr8_1:68997319-68997338 None:intergenic 25.0%
!!! TAGAAGTATGTTTTAAAAGC+TGG + chr8_1:68997318-68997337 Msa1210210:three_prime_UTR 25.0%
! AACAAGTAAACAAAGATAGA+AGG - chr8_1:68997345-68997364 None:intergenic 25.0%
! ATCATACTACTCGTATAATT+AGG + chr8_1:68997524-68997543 Msa1210210:three_prime_UTR 25.0%
! TCATACTACTCGTATAATTA+GGG + chr8_1:68997525-68997544 Msa1210210:three_prime_UTR 25.0%
!! GTGACAATTAACTGTTTCTA+GGG + chr8_1:68991858-68991877 Msa1210210:five_prime_UTR 30.0%
!! TGACAATTAACTGTTTCTAG+GGG + chr8_1:68991859-68991878 Msa1210210:five_prime_UTR 30.0%
! TTTTTCACTCCAAGAAAGAA+TGG - chr8_1:68991903-68991922 None:intergenic 30.0%
!! TCAATAACTTGCAGTTTTCT+CGG + chr8_1:68992026-68992045 Msa1210210:CDS 30.0%
ATATAATTATCGCTCAATGG+AGG - chr8_1:68992352-68992371 None:intergenic 30.0%
CTGATATAATTATCGCTCAA+TGG - chr8_1:68992355-68992374 None:intergenic 30.0%
AACGAGTTTAATCTTATCGA+TGG - chr8_1:68992392-68992411 None:intergenic 30.0%
AAGATTAAACTCGTTGATGT+AGG + chr8_1:68992397-68992416 Msa1210210:CDS 30.0%
TAAATGAAATTCACTTGACC+TGG - chr8_1:68992466-68992485 None:intergenic 30.0%
AGCACTTATGTATACAAACA+GGG - chr8_1:68992560-68992579 None:intergenic 30.0%
AAGCACTTATGTATACAAAC+AGG - chr8_1:68992561-68992580 None:intergenic 30.0%
!! CTTATTTTCATAAGTTCTCC+AGG - chr8_1:68992738-68992757 None:intergenic 30.0%
TGACTTTATTCTATTTGGAC+TGG - chr8_1:68992855-68992874 None:intergenic 30.0%
AACAAACATAAGCACTTATG+AGG - chr8_1:68992994-68993013 None:intergenic 30.0%
TGTGTTTCTTGAAATGGTAA+TGG + chr8_1:68993213-68993232 Msa1210210:intron 30.0%
GTGTTTCTTGAAATGGTAAT+GGG + chr8_1:68993214-68993233 Msa1210210:intron 30.0%
ACGAGAATATTAGGTACTAT+TGG + chr8_1:68993313-68993332 Msa1210210:intron 30.0%
CGAGAATATTAGGTACTATT+GGG + chr8_1:68993314-68993333 Msa1210210:intron 30.0%
GAGAATATTAGGTACTATTG+GGG + chr8_1:68993315-68993334 Msa1210210:intron 30.0%
TAATACCACAATCAAACAGA+GGG - chr8_1:68993493-68993512 None:intergenic 30.0%
TTAATACCACAATCAAACAG+AGG - chr8_1:68993494-68993513 None:intergenic 30.0%
TCCTATTGTTGGAATTTGAA+GGG - chr8_1:68993590-68993609 None:intergenic 30.0%
ATCCTATTGTTGGAATTTGA+AGG - chr8_1:68993591-68993610 None:intergenic 30.0%
AATCAAATGCATCCTATTGT+TGG - chr8_1:68993601-68993620 None:intergenic 30.0%
GATTAAAACCTTGAAATTCG+AGG + chr8_1:68993617-68993636 Msa1210210:intron 30.0%
! TCTGGAATATCGATAATTTG+AGG + chr8_1:68993651-68993670 Msa1210210:intron 30.0%
CTGGAATATCGATAATTTGA+GGG + chr8_1:68993652-68993671 Msa1210210:intron 30.0%
TACTTCCATAATAACACTTG+TGG + chr8_1:68993729-68993748 Msa1210210:intron 30.0%
!! TGTTGATTCTTATCTTATGC+TGG + chr8_1:68993898-68993917 Msa1210210:intron 30.0%
TAGAAAAGAGAAAACGGAAT+AGG + chr8_1:68994177-68994196 Msa1210210:intron 30.0%
AAACTGTGAACCATTTCATT+GGG + chr8_1:68994278-68994297 Msa1210210:intron 30.0%
GCTTTAACTAGTCATTAAAC+AGG - chr8_1:68994404-68994423 None:intergenic 30.0%
GTATTGAACCATGGTTATTA+AGG + chr8_1:68994456-68994475 Msa1210210:intron 30.0%
!!! TCTCTCTTTCAAGTTTTAAG+GGG + chr8_1:68994620-68994639 Msa1210210:intron 30.0%
!!! AGTTGTTTGTTTTCTAGCTA+AGG + chr8_1:68994659-68994678 Msa1210210:intron 30.0%
! AAGGTGCAATTTTCAATTGA+AGG + chr8_1:68994678-68994697 Msa1210210:intron 30.0%
AACAACTTTAAGTGGAACAA+TGG - chr8_1:68994781-68994800 None:intergenic 30.0%
GAATCAGACCGATATTATTA+AGG + chr8_1:68994960-68994979 Msa1210210:intron 30.0%
ATCAGACCGATATTATTAAG+GGG + chr8_1:68994962-68994981 Msa1210210:intron 30.0%
GTTATAATTGTGTGTGTTAG+CGG - chr8_1:68995194-68995213 None:intergenic 30.0%
!! TTGGGTGTGTATTTTATTTG+AGG - chr8_1:68995307-68995326 None:intergenic 30.0%
GTTCACAATTTCAAATCTGT+GGG - chr8_1:68995516-68995535 None:intergenic 30.0%
TATAGCAAGAGTTAAGTTAC+GGG - chr8_1:68995656-68995675 None:intergenic 30.0%
ATTTGTGTTCCTGCAAATAT+AGG + chr8_1:68995749-68995768 Msa1210210:intron 30.0%
AACCTTGAAAACTGATGTTA+CGG - chr8_1:68995881-68995900 None:intergenic 30.0%
TCCTATTTACAAGAGACATT+TGG + chr8_1:68996260-68996279 Msa1210210:intron 30.0%
CCTATTTACAAGAGACATTT+GGG + chr8_1:68996261-68996280 Msa1210210:intron 30.0%
TCAACAAAAATGGATGTATC+TGG + chr8_1:68996284-68996303 Msa1210210:intron 30.0%
ATTTCTCTTGTAAATAGGAC+CGG + chr8_1:68996348-68996367 Msa1210210:intron 30.0%
AGGGAGTAATTCCTAATTAA+AGG + chr8_1:68996371-68996390 Msa1210210:intron 30.0%
TGCTAGAACTTCCTTTAATT+AGG - chr8_1:68996385-68996404 None:intergenic 30.0%
GCGTAAGAAATGTGTATTTA+CGG - chr8_1:68996409-68996428 None:intergenic 30.0%
AATCAAAAGTCAAACAGGTA+GGG - chr8_1:68996480-68996499 None:intergenic 30.0%
TAATCAAAAGTCAAACAGGT+AGG - chr8_1:68996481-68996500 None:intergenic 30.0%
TTGATTATATTTGTCTTCCC+TGG + chr8_1:68996494-68996513 Msa1210210:intron 30.0%
AACTATTCCTAAAAATGCCA+GGG - chr8_1:68996514-68996533 None:intergenic 30.0%
TAACTATTCCTAAAAATGCC+AGG - chr8_1:68996515-68996534 None:intergenic 30.0%
AGAAATGAAACACAAACTCT+TGG - chr8_1:68996573-68996592 None:intergenic 30.0%
TCTTACAATGGTTCTTTAGT+TGG - chr8_1:68996758-68996777 None:intergenic 30.0%
ACTAAAGAACCATTGTAAGA+TGG + chr8_1:68996758-68996777 Msa1210210:exon 30.0%
TATGATTTACTTTGAGCCTT+TGG + chr8_1:68997183-68997202 Msa1210210:three_prime_UTR 30.0%
TATGATATGAGAGTAAACGT+TGG - chr8_1:68997560-68997579 None:intergenic 30.0%
CTCATATCATATCTTTCAGT+TGG + chr8_1:68997569-68997588 Msa1210210:three_prime_UTR 30.0%
ATTCGTGATTGTCAATATGT+GGG + chr8_1:68997598-68997617 Msa1210210:three_prime_UTR 30.0%
!!! AACTGTTTCTAGGGGTATTT+TGG + chr8_1:68991867-68991886 Msa1210210:five_prime_UTR 35.0%
GAAGCAAAATCCACTACAAA+CGG + chr8_1:68991925-68991944 Msa1210210:five_prime_UTR 35.0%
GACAGAGAGTTGTATATTTC+CGG - chr8_1:68992078-68992097 None:intergenic 35.0%
! AGAGATGAATTTGGTCTTTC+TGG - chr8_1:68992150-68992169 None:intergenic 35.0%
TGTCAACGTAGAGATGAATT+TGG - chr8_1:68992159-68992178 None:intergenic 35.0%
AGTTATGGAAAGACACATTG+AGG + chr8_1:68992309-68992328 Msa1210210:CDS 35.0%
AACACTTTGGTTACAAAAGG+CGG - chr8_1:68992500-68992519 None:intergenic 35.0%
! ACCAAAGTGTTATTGTCAGA+TGG + chr8_1:68992509-68992528 Msa1210210:intron 35.0%
TCCATCTGACAATAACACTT+TGG - chr8_1:68992513-68992532 None:intergenic 35.0%
! CTGTTTTCATAAACTATCCC+TGG + chr8_1:68992717-68992736 Msa1210210:intron 35.0%
TGGTCCTTAATGCAATAGAT+TGG + chr8_1:68993040-68993059 Msa1210210:intron 35.0%
GGTCCTTAATGCAATAGATT+GGG + chr8_1:68993041-68993060 Msa1210210:intron 35.0%
CATCCCAATCTATTGCATTA+AGG - chr8_1:68993047-68993066 None:intergenic 35.0%
TCTTACAATTTGAACGTTGG+AGG - chr8_1:68993136-68993155 None:intergenic 35.0%
TCCAACGTTCAAATTGTAAG+AGG + chr8_1:68993135-68993154 Msa1210210:intron 35.0%
TCCTCTTACAATTTGAACGT+TGG - chr8_1:68993139-68993158 None:intergenic 35.0%
ACTTGATCCTTGGAATTGTA+AGG + chr8_1:68993383-68993402 Msa1210210:intron 35.0%
GATACAACCTTACAATTCCA+AGG - chr8_1:68993393-68993412 None:intergenic 35.0%
TCCCTTCAAATTCCAACAAT+AGG + chr8_1:68993586-68993605 Msa1210210:intron 35.0%
CAAATTACCCACAATTCTTG+TGG - chr8_1:68993996-68994015 None:intergenic 35.0%
! CTAGTGATTTTCTCAGTGTA+AGG - chr8_1:68994068-68994087 None:intergenic 35.0%
ATTCTTGTAGACAGTATGCA+AGG + chr8_1:68994143-68994162 Msa1210210:intron 35.0%
CAAACTGTGAACCATTTCAT+TGG + chr8_1:68994277-68994296 Msa1210210:intron 35.0%
AGAGAAGTTAGACACTTAGA+CGG - chr8_1:68994309-68994328 None:intergenic 35.0%
! GCAAACTGTCTTGATTTTAG+TGG + chr8_1:68994372-68994391 Msa1210210:intron 35.0%
TTGAACCATGGTTATTAAGG+AGG + chr8_1:68994459-68994478 Msa1210210:intron 35.0%
TGAATCCTCCTTAATAACCA+TGG - chr8_1:68994467-68994486 None:intergenic 35.0%
TTCAATTGAAGGAACAAGCA+AGG + chr8_1:68994689-68994708 Msa1210210:intron 35.0%
GATGATTTGACTCTTATCGA+TGG + chr8_1:68994732-68994751 Msa1210210:intron 35.0%
!!! TGAATTCATGTGTCGACTTT+TGG + chr8_1:68994920-68994939 Msa1210210:intron 35.0%
! TTTGGAATGAATCCCACATA+TGG + chr8_1:68994938-68994957 Msa1210210:intron 35.0%
TCAGACCGATATTATTAAGG+GGG + chr8_1:68994963-68994982 Msa1210210:intron 35.0%
CACACACAATTATAACCTAC+TGG + chr8_1:68995198-68995217 Msa1210210:intron 35.0%
TGCTTTCCTATACTTAGGTT+GGG - chr8_1:68995325-68995344 None:intergenic 35.0%
TTGACACGGAAGTTATTTGT+GGG - chr8_1:68995350-68995369 None:intergenic 35.0%
ATTGACACGGAAGTTATTTG+TGG - chr8_1:68995351-68995370 None:intergenic 35.0%
GGTTCACAATTTCAAATCTG+TGG - chr8_1:68995517-68995536 None:intergenic 35.0%
TGTGTGTAATAAACTCGGAT+AGG + chr8_1:68995549-68995568 Msa1210210:intron 35.0%
TGAAAACGCCATCAAGAAAA+TGG + chr8_1:68995588-68995607 Msa1210210:CDS 35.0%
GAAAACGCCATCAAGAAAAT+GGG + chr8_1:68995589-68995608 Msa1210210:CDS 35.0%
TCATTATTGCAAGTATGCTC+AGG + chr8_1:68995616-68995635 Msa1210210:CDS 35.0%
GTTAGAAGAACTATCTGACT+GGG - chr8_1:68995818-68995837 None:intergenic 35.0%
ATTCGAACTAAGAGAATGAG+GGG - chr8_1:68995915-68995934 None:intergenic 35.0%
CATTCGAACTAAGAGAATGA+GGG - chr8_1:68995916-68995935 None:intergenic 35.0%
TCATTCGAACTAAGAGAATG+AGG - chr8_1:68995917-68995936 None:intergenic 35.0%
TTCTCTTAGTTCGAATGATC+TGG + chr8_1:68995919-68995938 Msa1210210:intron 35.0%
TAGTATGTACCTTGATCGAA+AGG - chr8_1:68996016-68996035 None:intergenic 35.0%
TATCTTCTATCATTCAGCCT+CGG - chr8_1:68996074-68996093 None:intergenic 35.0%
ATGTCTCTTGTAAATAGGAC+CGG - chr8_1:68996259-68996278 None:intergenic 35.0%
CCCAAATGTCTCTTGTAAAT+AGG - chr8_1:68996264-68996283 None:intergenic 35.0%
GACATTTGGGTCAACAAAAA+TGG + chr8_1:68996274-68996293 Msa1210210:intron 35.0%
TAATTAGGAATTACTCCCTC+CGG - chr8_1:68996370-68996389 None:intergenic 35.0%
GTTTATTGTTTCATCATCGG+TGG + chr8_1:68996593-68996612 Msa1210210:intron 35.0%
AAAACGGGGATATTTCATTG+GGG - chr8_1:68996726-68996745 None:intergenic 35.0%
GAAAACGGGGATATTTCATT+GGG - chr8_1:68996727-68996746 None:intergenic 35.0%
! ACCTGATTTTCTGCTCATAT+AGG + chr8_1:68996883-68996902 Msa1210210:three_prime_UTR 35.0%
TCCTATATGAGCAGAAAATC+AGG - chr8_1:68996887-68996906 None:intergenic 35.0%
!!! TCTCGTCTAAGTTTTGAAGT+AGG - chr8_1:68997095-68997114 None:intergenic 35.0%
! TATAGGACCAAAAGGACTTT+TGG + chr8_1:68997150-68997169 Msa1210210:three_prime_UTR 35.0%
! GTAATCACCAAAAGTCCTTT+TGG - chr8_1:68997160-68997179 None:intergenic 35.0%
AATCTCATGTGACAATGACA+AGG + chr8_1:68997236-68997255 Msa1210210:three_prime_UTR 35.0%
ATCTCATGTGACAATGACAA+GGG + chr8_1:68997237-68997256 Msa1210210:three_prime_UTR 35.0%
GATAATTGCCATCACACATA+TGG - chr8_1:68997297-68997316 None:intergenic 35.0%
AAGATATGCATAATCAGCCA+GGG - chr8_1:68997434-68997453 None:intergenic 35.0%
!! TAGACTGACTTTGAAACTCA+TGG + chr8_1:68997488-68997507 Msa1210210:three_prime_UTR 35.0%
CACATATTGACAATCACGAA+TGG - chr8_1:68997599-68997618 None:intergenic 35.0%
CATTCGTGATTGTCAATATG+TGG + chr8_1:68997597-68997616 Msa1210210:three_prime_UTR 35.0%
! TATGATCTTGGCTTTCAACA+TGG - chr8_1:68997677-68997696 None:intergenic 35.0%
!! TTTGAGCACTGATATGATCT+TGG - chr8_1:68997689-68997708 None:intergenic 35.0%
!! ATAACTTGCAGTTTTCTCGG+TGG + chr8_1:68992029-68992048 Msa1210210:CDS 40.0%
TTGTATATTTCCGGTGCGTA+AGG - chr8_1:68992069-68992088 None:intergenic 40.0%
AGAGGTTAGGGTTACGAAAT+GGG - chr8_1:68992125-68992144 None:intergenic 40.0%
ACGTTGACACACTTCTTCAA+TGG + chr8_1:68992170-68992189 Msa1210210:CDS 40.0%
CACACTTCTTCAATGGAACA+AGG + chr8_1:68992177-68992196 Msa1210210:CDS 40.0%
AAACTCGTTGATGTAGGAAC+TGG + chr8_1:68992403-68992422 Msa1210210:CDS 40.0%
AGATTGGGATGTAACACTGA+TGG + chr8_1:68993056-68993075 Msa1210210:intron 40.0%
TGATGGAGTCTATGAACAAG+CGG + chr8_1:68993073-68993092 Msa1210210:intron 40.0%
AATTGTAAGAGGAAGAGCAG+AGG + chr8_1:68993146-68993165 Msa1210210:intron 40.0%
AATTTGACATAGCAGTAGCC+AGG + chr8_1:68993278-68993297 Msa1210210:intron 40.0%
ATTTGACATAGCAGTAGCCA+GGG + chr8_1:68993279-68993298 Msa1210210:intron 40.0%
GTTGCAGAGACGAGAATATT+AGG + chr8_1:68993304-68993323 Msa1210210:intron 40.0%
TTTGTCCCTCTGTTTGATTG+TGG + chr8_1:68993485-68993504 Msa1210210:intron 40.0%
GTGGTATTAAAATGCATCGC+TGG + chr8_1:68993504-68993523 Msa1210210:intron 40.0%
ACATGGTACCTCGAATTTCA+AGG - chr8_1:68993628-68993647 None:intergenic 40.0%
! TGAAATTCGAGGTACCATGT+TGG + chr8_1:68993628-68993647 Msa1210210:intron 40.0%
ATCGATATTCCAGACCAACA+TGG - chr8_1:68993645-68993664 None:intergenic 40.0%
GACACAGTCCTACAATTCAA+AGG + chr8_1:68993683-68993702 Msa1210210:intron 40.0%
GGAATGTTTATTGCTGCCAA+AGG + chr8_1:68993829-68993848 Msa1210210:CDS 40.0%
TAGCATCTGTTACATACCTC+AGG - chr8_1:68993862-68993881 None:intergenic 40.0%
ACTATTTAGTGATGCTTCGG+TGG + chr8_1:68993926-68993945 Msa1210210:intron 40.0%
! AATCACTAGCTTCTCCTGTT+CGG + chr8_1:68994079-68994098 Msa1210210:intron 40.0%
TGCAATTTGTCTGTGTTTCC+CGG - chr8_1:68994113-68994132 None:intergenic 40.0%
AAGACAGTTTGCAACCAGTA+CGG - chr8_1:68994364-68994383 None:intergenic 40.0%
!! CTGTCTTGATTTTAGTGGAG+TGG + chr8_1:68994377-68994396 Msa1210210:intron 40.0%
!! CTCTGTTGAGTATTGAACCA+TGG + chr8_1:68994447-68994466 Msa1210210:intron 40.0%
GCAAGGAAACGAGAGAAAAA+AGG + chr8_1:68994706-68994725 Msa1210210:intron 40.0%
ATCGGTCTGATTCCATATGT+GGG - chr8_1:68994953-68994972 None:intergenic 40.0%
TATCGGTCTGATTCCATATG+TGG - chr8_1:68994954-68994973 None:intergenic 40.0%
!! TATAACCTACTGGCTTCATC+CGG + chr8_1:68995208-68995227 Msa1210210:intron 40.0%
TACACACCCAACCTAAGTAT+AGG + chr8_1:68995316-68995335 Msa1210210:intron 40.0%
CTGCTTTCCTATACTTAGGT+TGG - chr8_1:68995326-68995345 None:intergenic 40.0%
TTTGCAGTTTGCGATGATAG+TGG - chr8_1:68995396-68995415 None:intergenic 40.0%
! TGATGCACCCATTTTCTTGA+TGG - chr8_1:68995599-68995618 None:intergenic 40.0%
GGTTAGAAGAACTATCTGAC+TGG - chr8_1:68995819-68995838 None:intergenic 40.0%
! AGCCGTAACATCAGTTTTCA+AGG + chr8_1:68995876-68995895 Msa1210210:intron 40.0%
GAGGGTAAACTGTAAAAGTC+AGG + chr8_1:68995981-68996000 Msa1210210:intron 40.0%
!!! GTTTTAGTTGAAATGGACCG+AGG + chr8_1:68996054-68996073 Msa1210210:intron 40.0%
TCACTAACAATTACTCCCTC+CGG + chr8_1:68996237-68996256 Msa1210210:intron 40.0%
! TTGTCTTCCCTGGCATTTTT+AGG + chr8_1:68996504-68996523 Msa1210210:intron 40.0%
TACTGCTGTCATATGTCTGA+AGG + chr8_1:68996691-68996710 Msa1210210:CDS 40.0%
GGAAAACGGGGATATTTCAT+TGG - chr8_1:68996728-68996747 None:intergenic 40.0%
! ATGAAATATCCCCGTTTTCC+TGG + chr8_1:68996728-68996747 Msa1210210:CDS 40.0%
! TGAAATATCCCCGTTTTCCT+GGG + chr8_1:68996729-68996748 Msa1210210:CDS 40.0%
AGTGAGCATCCATCTTACAA+TGG - chr8_1:68996770-68996789 None:intergenic 40.0%
AAGATGGATGCTCACTCTAT+TGG + chr8_1:68996774-68996793 Msa1210210:exon 40.0%
ATAGGATTGGGTCAGAAGAA+CGG - chr8_1:68996810-68996829 None:intergenic 40.0%
AGGTTCATCAATGTCTCCAA+AGG - chr8_1:68997202-68997221 None:intergenic 40.0%
! GAGATTTTTGCATTGCCTTC+AGG - chr8_1:68997222-68997241 None:intergenic 40.0%
!! TTGATTTGTTCTCAACTCCC+TGG + chr8_1:68997414-68997433 Msa1210210:three_prime_UTR 40.0%
CAAGATATGCATAATCAGCC+AGG - chr8_1:68997435-68997454 None:intergenic 40.0%
!!! TCTAGGGGTATTTTGGTACG+AGG + chr8_1:68991874-68991893 Msa1210210:five_prime_UTR 45.0%
!!! CTAGGGGTATTTTGGTACGA+GGG + chr8_1:68991875-68991894 Msa1210210:five_prime_UTR 45.0%
ACGAGGGAACCATTCTTTCT+TGG + chr8_1:68991891-68991910 Msa1210210:five_prime_UTR 45.0%
ACAACAGTAGTTGAGTGCAG+CGG + chr8_1:68991956-68991975 Msa1210210:five_prime_UTR 45.0%
TCTACAAACACCTTACGCAC+CGG + chr8_1:68992056-68992075 Msa1210210:CDS 45.0%
AGGTTAGGGTTACGAAATGG+GGG - chr8_1:68992123-68992142 None:intergenic 45.0%
GAGGTTAGGGTTACGAAATG+GGG - chr8_1:68992124-68992143 None:intergenic 45.0%
GAGAGGTTAGGGTTACGAAA+TGG - chr8_1:68992126-68992145 None:intergenic 45.0%
! AATTTGGTCTTTCTGGCGAG+AGG - chr8_1:68992143-68992162 None:intergenic 45.0%
CAATGGAGGCAAAATTGCGA+GGG - chr8_1:68992338-68992357 None:intergenic 45.0%
TCAATGGAGGCAAAATTGCG+AGG - chr8_1:68992339-68992358 None:intergenic 45.0%
GCAATGGCTAAAACTACTCC+AGG - chr8_1:68992439-68992458 None:intergenic 45.0%
!! GTTTTAGCCATTGCTAGACC+AGG + chr8_1:68992445-68992464 Msa1210210:CDS 45.0%
GAGCACGTTGTGGATGTTAT+CGG + chr8_1:68993108-68993127 Msa1210210:intron 45.0%
AACGGTAGACAATACTCAGC+TGG - chr8_1:68993796-68993815 None:intergenic 45.0%
! AGCTGAGTATTGTCTACCGT+TGG + chr8_1:68993795-68993814 Msa1210210:intron 45.0%
CTCCTGTTCGGTAAATAGAC+CGG + chr8_1:68994091-68994110 Msa1210210:intron 45.0%
TCCTGTTCGGTAAATAGACC+GGG + chr8_1:68994092-68994111 Msa1210210:intron 45.0%
!! TCAGACTGGATTAGTCTGAC+TGG + chr8_1:68994253-68994272 Msa1210210:intron 45.0%
CTGTGAACCATTTCATTGGG+TGG + chr8_1:68994281-68994300 Msa1210210:intron 45.0%
CAGTTATTGAACCACCGTAC+TGG + chr8_1:68994347-68994366 Msa1210210:intron 45.0%
GTGGGCCCCCTTAATAATAT+CGG - chr8_1:68994971-68994990 None:intergenic 45.0%
ATTATCCGGATGAAGCCAGT+AGG - chr8_1:68995216-68995235 None:intergenic 45.0%
GGGTCTGCTTTCCTATACTT+AGG - chr8_1:68995330-68995349 None:intergenic 45.0%
AACTAAGAGAATGAGGGGAG+GGG - chr8_1:68995910-68995929 None:intergenic 45.0%
GAACTAAGAGAATGAGGGGA+GGG - chr8_1:68995911-68995930 None:intergenic 45.0%
CTAGCTGTACCTTTCGATCA+AGG + chr8_1:68996004-68996023 Msa1210210:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG - chr8_1:68996352-68996371 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG - chr8_1:68996351-68996370 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG + chr8_1:68996351-68996370 Msa1210210:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG + chr8_1:68996352-68996371 Msa1210210:intron 45.0%
CCACTGAACATGCAACATCA+AGG - chr8_1:68996646-68996665 None:intergenic 45.0%
CCTTGATGTTGCATGTTCAG+TGG + chr8_1:68996643-68996662 Msa1210210:intron 45.0%
! TAGTTGGTGTCCCAGGAAAA+CGG - chr8_1:68996742-68996761 None:intergenic 45.0%
GGAGACATTGATGAACCTGA+AGG + chr8_1:68997204-68997223 Msa1210210:three_prime_UTR 45.0%
GTACGTTGCCATATGTGTGA+TGG + chr8_1:68997286-68997305 Msa1210210:three_prime_UTR 45.0%
CTAAGCCTGAGTGAAGGATA+GGG + chr8_1:68997719-68997738 Msa1210210:three_prime_UTR 45.0%
!! TATATATAAAAAAAAAAAGT+TGG + chr8_1:68997050-68997069 Msa1210210:three_prime_UTR 5.0%
!! ATATATAAAAAAAAAAAGTT+GGG + chr8_1:68997051-68997070 Msa1210210:three_prime_UTR 5.0%
! GTGTTGCTAGCCGTTTGTAG+TGG - chr8_1:68991938-68991957 None:intergenic 50.0%
CAACAGTAGTTGAGTGCAGC+GGG + chr8_1:68991957-68991976 Msa1210210:five_prime_UTR 50.0%
GAAATGGGGGAGATTGGATG+TGG - chr8_1:68992110-68992129 None:intergenic 50.0%
GGTTACGAAATGGGGGAGAT+TGG - chr8_1:68992116-68992135 None:intergenic 50.0%
! GTCTTTCTGGCGAGAGGTTA+GGG - chr8_1:68992137-68992156 None:intergenic 50.0%
GTTGATGTAGGAACTGGTGC+AGG + chr8_1:68992409-68992428 Msa1210210:CDS 50.0%
CACTTGACCTGGTCTAGCAA+TGG - chr8_1:68992455-68992474 None:intergenic 50.0%
! GAACAAGCGGTGCGTTTTCT+TGG + chr8_1:68993086-68993105 Msa1210210:intron 50.0%
! CGTTTTCTTGGAGCACGTTG+TGG + chr8_1:68993098-68993117 Msa1210210:intron 50.0%
!! CTTGAAATGGTAATGGGCGC+AGG + chr8_1:68993220-68993239 Msa1210210:intron 50.0%
! TTCGAGGTACCATGTTGGTC+TGG + chr8_1:68993633-68993652 Msa1210210:intron 50.0%
!! TGTCTACCGTTGGTTCGTGT+TGG + chr8_1:68993805-68993824 Msa1210210:CDS 50.0%
!! GTCTACCGTTGGTTCGTGTT+GGG + chr8_1:68993806-68993825 Msa1210210:CDS 50.0%
!! TCTACCGTTGGTTCGTGTTG+GGG + chr8_1:68993807-68993826 Msa1210210:CDS 50.0%
ATTCCCCCAACACGAACCAA+CGG - chr8_1:68993814-68993833 None:intergenic 50.0%
TACCTCAGGATCGTGACCTT+TGG - chr8_1:68993848-68993867 None:intergenic 50.0%
TCCCGGTCTATTTACCGAAC+AGG - chr8_1:68994096-68994115 None:intergenic 50.0%
ACAGTTTGCAACCAGTACGG+TGG - chr8_1:68994361-68994380 None:intergenic 50.0%
CGAACTAAGAGAATGAGGGG+AGG - chr8_1:68995912-68995931 None:intergenic 50.0%
GTGGAATCGCAAAGCCCATA+TGG + chr8_1:68996662-68996681 Msa1210210:intron 50.0%
CAGCAGTACGCTGACCATAT+GGG - chr8_1:68996679-68996698 None:intergenic 50.0%
ACAGCAGTACGCTGACCATA+TGG - chr8_1:68996680-68996699 None:intergenic 50.0%
CGGGGATATTTCATTGGGGT+GGG - chr8_1:68996722-68996741 None:intergenic 50.0%
ACGGGGATATTTCATTGGGG+TGG - chr8_1:68996723-68996742 None:intergenic 50.0%
! AGTTGGTGTCCCAGGAAAAC+GGG - chr8_1:68996741-68996760 None:intergenic 50.0%
! GGTTCTTTAGTTGGTGTCCC+AGG - chr8_1:68996749-68996768 None:intergenic 50.0%
AAGAGCCTAAGCCTGAGTGA+AGG + chr8_1:68997713-68997732 Msa1210210:three_prime_UTR 50.0%
CCTATCCTTCACTCAGGCTT+AGG - chr8_1:68997721-68997740 None:intergenic 50.0%
CCTAAGCCTGAGTGAAGGAT+AGG + chr8_1:68997718-68997737 Msa1210210:three_prime_UTR 50.0%
CTTTGCCCTATCCTTCACTC+AGG - chr8_1:68997727-68997746 None:intergenic 50.0%
! ATAACGTGAAAGCGCGCGGT+GGG + chr8_1:68991980-68991999 Msa1210210:five_prime_UTR 55.0%
!! CGCGGTGGGTTGAAGTGAAA+TGG + chr8_1:68991994-68992013 Msa1210210:exon 55.0%
! GGTCTTTCTGGCGAGAGGTT+AGG - chr8_1:68992138-68992157 None:intergenic 55.0%
AATGGGCGCAGGACAGAGTT+TGG + chr8_1:68993231-68993250 Msa1210210:intron 55.0%
ATGGGCGCAGGACAGAGTTT+GGG + chr8_1:68993232-68993251 Msa1210210:intron 55.0%
!! CTACCGTTGGTTCGTGTTGG+GGG + chr8_1:68993808-68993827 Msa1210210:CDS 55.0%
TGCCAAAGGTCACGATCCTG+AGG + chr8_1:68993843-68993862 Msa1210210:CDS 55.0%
GACGGCACCACCCAATGAAA+TGG - chr8_1:68994291-68994310 None:intergenic 55.0%
! GTTGGTGTCCCAGGAAAACG+GGG - chr8_1:68996740-68996759 None:intergenic 55.0%
GTCGCTCGTGCACATCATAC+GGG - chr8_1:68996865-68996884 None:intergenic 55.0%
GGTCGCTCGTGCACATCATA+CGG - chr8_1:68996866-68996885 None:intergenic 55.0%
! CGGGATAACGTGAAAGCGCG+CGG + chr8_1:68991976-68991995 Msa1210210:five_prime_UTR 60.0%
! GATAACGTGAAAGCGCGCGG+TGG + chr8_1:68991979-68991998 Msa1210210:five_prime_UTR 60.0%
GGAACTGGTGCAGGTCTTCC+TGG + chr8_1:68992418-68992437 Msa1210210:CDS 60.0%
TGGGCGCAGGACAGAGTTTG+GGG + chr8_1:68993233-68993252 Msa1210210:intron 60.0%
TCTCGTCTCTGCAACTGCCC+TGG - chr8_1:68993299-68993318 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 68991858 68997757 68991858 ID=Msa1210210;Name=Msa1210210
chr8_1 mRNA 68991858 68997757 68991858 ID=Msa1210210-mRNA-1;Parent=Msa1210210;Name=Msa1210210-mRNA-1;_AED=0.10;_eAED=0.10;_QI=155|0.75|1|1|1|1|5|982|208
chr8_1 exon 68991858 68992198 68991858 ID=Msa1210210-mRNA-1:exon:23074;Parent=Msa1210210-mRNA-1
chr8_1 exon 68992274 68992466 68992274 ID=Msa1210210-mRNA-1:exon:23075;Parent=Msa1210210-mRNA-1
chr8_1 exon 68993797 68993864 68993797 ID=Msa1210210-mRNA-1:exon:23076;Parent=Msa1210210-mRNA-1
chr8_1 exon 68995571 68995637 68995571 ID=Msa1210210-mRNA-1:exon:23077;Parent=Msa1210210-mRNA-1
chr8_1 exon 68996663 68997757 68996663 ID=Msa1210210-mRNA-1:exon:23078;Parent=Msa1210210-mRNA-1
chr8_1 five_prime_UTR 68991858 68992012 68991858 ID=Msa1210210-mRNA-1:five_prime_utr;Parent=Msa1210210-mRNA-1
chr8_1 CDS 68992013 68992198 68992013 ID=Msa1210210-mRNA-1:cds;Parent=Msa1210210-mRNA-1
chr8_1 CDS 68992274 68992466 68992274 ID=Msa1210210-mRNA-1:cds;Parent=Msa1210210-mRNA-1
chr8_1 CDS 68993797 68993864 68993797 ID=Msa1210210-mRNA-1:cds;Parent=Msa1210210-mRNA-1
chr8_1 CDS 68995571 68995637 68995571 ID=Msa1210210-mRNA-1:cds;Parent=Msa1210210-mRNA-1
chr8_1 CDS 68996663 68996775 68996663 ID=Msa1210210-mRNA-1:cds;Parent=Msa1210210-mRNA-1
chr8_1 three_prime_UTR 68996776 68997757 68996776 ID=Msa1210210-mRNA-1:three_prime_utr;Parent=Msa1210210-mRNA-1
Gene Sequence

>Msa1210210

ATGGTACTACTTTTCAATAACTTGCAGTTTTCTCGGTGGACTTTCTACAAACACCTTACGCACCGGAAATATACAACTCTCTGTCAGCGCAATTCCACATCCAATCTCCCCCATTTCGTAACCCTAACCTCTCGCCAGAAAGACCAAATTCATCTCTACGTTGACACACTTCTTCAATGGAACAAGCGCATGAATCTAACTGCAGTTAAAGAAGTGAATGAAGTTATGGAAAGACACATTGAGGACTCCCTCGCAATTTTGCCTCCATTGAGCGATAATTATATCAGTCATTGCAGCAATTCCATCGATAAGATTAAACTCGTTGATGTAGGAACTGGTGCAGGTCTTCCTGGAGTAGTTTTAGCCATTGCTAGACCAGCTGAGTATTGTCTACCGTTGGTTCGTGTTGGGGGAATGTTTATTGCTGCCAAAGGTCACGATCCTGAGGATGAAGTTAAGAAAGCTGAAAACGCCATCAAGAAAATGGGTGCATCATTATTGCAAGTATGCTCAGTGGAATCGCAAAGCCCATATGGTCAGCGTACTGCTGTCATATGTCTGAAGGATCGTCCCACCCCAATGAAATATCCCCGTTTTCCTGGGACACCAACTAAAGAACCATTGTAA
Protein sequence

>Msa1210210

MVLLFNNLQFSRWTFYKHLTHRKYTTLCQRNSTSNLPHFVTLTSRQKDQIHLYVDTLLQWNKRMNLTAVKEVNEVMERHIEDSLAILPPLSDNYISHCSNSIDKIKLVDVGTGAGLPGVVLAIARPAEYCLPLVRVGGMFIAAKGHDPEDEVKKAENAIKKMGASLLQVCSVESQSPYGQRTAVICLKDRPTPMKYPRFPGTPTKEPL*