AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1210930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210930 MtrunA17_Chr4g0059471 71.587 271 14 3 1 208 1 271 4.83e-134 377
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1210930 AT5G50110.1 46.124 258 74 4 14 208 37 292 3.91e-69 213
Msa1210930 AT5G50110.2 45.192 208 51 4 64 208 1 208 2.02e-49 160

Find 106 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATGAATTTGGTCTTTC+TGG 0.146446 8_1:-70259751 None:intergenic
AACTGTTTCTAGGGGTATTT+TGG 0.152923 8_1:+70259471 Msa1210930:five_prime_UTR
ATCATACTACTCGTATAATT+AGG 0.186329 8_1:+70265128 Msa1210930:three_prime_UTR
TGAAAACGCCATCAAGAAAA+TGG 0.236105 8_1:+70263192 Msa1210930:CDS
GACAGAGAGTTGTATATTTC+CGG 0.248885 8_1:-70259679 None:intergenic
GTCTACCGTTGGTTCGTGTT+GGG 0.257709 8_1:+70261410 Msa1210930:CDS
AGTGACAATTAACTGTTTCT+AGG 0.265399 8_1:+70259461 None:intergenic
TTTACTTGTTATTATTATCT+TGG 0.274054 8_1:+70264959 Msa1210930:three_prime_UTR
TATGATTTACTTTGAGCCTT+TGG 0.299360 8_1:+70264787 Msa1210930:three_prime_UTR
CCTGTGATTTATTATTATTA+AGG 0.311287 8_1:+70265065 Msa1210930:three_prime_UTR
GGTCTTTCTGGCGAGAGGTT+AGG 0.317501 8_1:-70259739 None:intergenic
GGAACTGGTGCAGGTCTTCC+TGG 0.323742 8_1:+70260022 Msa1210930:CDS
ACGAGGGAACCATTCTTTCT+TGG 0.344725 8_1:+70259495 Msa1210930:five_prime_UTR
TCATACTACTCGTATAATTA+GGG 0.360734 8_1:+70265129 Msa1210930:three_prime_UTR
TCTTACAATGGTTCTTTAGT+TGG 0.360950 8_1:-70264359 None:intergenic
TATAGGACCAAAAGGACTTT+TGG 0.361833 8_1:+70264754 Msa1210930:three_prime_UTR
GTAATCACCAAAAGTCCTTT+TGG 0.369666 8_1:-70264761 None:intergenic
GTCTTTCTGGCGAGAGGTTA+GGG 0.371857 8_1:-70259738 None:intergenic
CTGTGATTTATTATTATTAA+GGG 0.380875 8_1:+70265066 Msa1210930:three_prime_UTR
TTTGAGCACTGATATGATCT+TGG 0.381044 8_1:-70265290 None:intergenic
AGTTGGTGTCCCAGGAAAAC+GGG 0.388602 8_1:-70264342 None:intergenic
ACAGCAGTACGCTGACCATA+TGG 0.393838 8_1:-70264281 None:intergenic
GAGAGGTTAGGGTTACGAAA+TGG 0.402321 8_1:-70259727 None:intergenic
TGTCTACCGTTGGTTCGTGT+TGG 0.406933 8_1:+70261409 Msa1210930:CDS
CCTATCCTTCACTCAGGCTT+AGG 0.414730 8_1:-70265322 None:intergenic
AGAGGTTAGGGTTACGAAAT+GGG 0.416350 8_1:-70259726 None:intergenic
TCCTATATGAGCAGAAAATC+AGG 0.418245 8_1:-70264488 None:intergenic
CTCATATCATATCTTTCAGT+TGG 0.424558 8_1:+70265173 Msa1210930:three_prime_UTR
TGTCAACGTAGAGATGAATT+TGG 0.424734 8_1:-70259760 None:intergenic
CATTCGTGATTGTCAATATG+TGG 0.427334 8_1:+70265201 Msa1210930:three_prime_UTR
ACGTTGACACACTTCTTCAA+TGG 0.428268 8_1:+70259774 Msa1210930:CDS
TAAAGAAGTGAATGAAGTTA+TGG 0.428995 8_1:+70259898 Msa1210930:CDS
AAGATGGATGCTCACTCTAT+TGG 0.433034 8_1:+70264378 Msa1210930:exon
GAAAACGGGGATATTTCATT+GGG 0.441381 8_1:-70264328 None:intergenic
CGCGGTGGGTTGAAGTGAAA+TGG 0.442952 8_1:+70259598 Msa1210930:exon
GTGACAATTAACTGTTTCTA+GGG 0.443306 8_1:+70259462 Msa1210930:five_prime_UTR
GGAAAACGGGGATATTTCAT+TGG 0.445243 8_1:-70264329 None:intergenic
GATAATTGCCATCACACATA+TGG 0.451791 8_1:-70264898 None:intergenic
TACCTCAGGATCGTGACCTT+TGG 0.461899 8_1:-70261449 None:intergenic
GTGGAATCGCAAAGCCCATA+TGG 0.466111 8_1:+70264266 Msa1210930:intron
TTCTTATATATAGGACCAAA+AGG 0.468496 8_1:+70264746 Msa1210930:three_prime_UTR
AACAAGTAAACAAAGATAGA+AGG 0.470691 8_1:-70264946 None:intergenic
CCTAAGCCTGAGTGAAGGAT+AGG 0.473791 8_1:+70265322 Msa1210930:three_prime_UTR
GGTTCTTTAGTTGGTGTCCC+AGG 0.475939 8_1:-70264350 None:intergenic
TAGTTGGTGTCCCAGGAAAA+CGG 0.477831 8_1:-70264343 None:intergenic
TTGTATATTTCCGGTGCGTA+AGG 0.488531 8_1:-70259670 None:intergenic
TCTACCGTTGGTTCGTGTTG+GGG 0.489555 8_1:+70261411 Msa1210930:CDS
AAACTCGTTGATGTAGGAAC+TGG 0.493161 8_1:+70260007 Msa1210930:CDS
CTGATATAATTATCGCTCAA+TGG 0.494805 8_1:-70259956 None:intergenic
TTGATTTGTTCTCAACTCCC+TGG 0.495831 8_1:+70265018 Msa1210930:three_prime_UTR
AGCTGAGTATTGTCTACCGT+TGG 0.498156 8_1:+70261399 Msa1210930:intron
GGTCGCTCGTGCACATCATA+CGG 0.501619 8_1:-70264467 None:intergenic
GAAGCAAAATCCACTACAAA+CGG 0.502222 8_1:+70259529 Msa1210930:five_prime_UTR
AACGAGTTTAATCTTATCGA+TGG 0.503072 8_1:-70259993 None:intergenic
GAAAACGCCATCAAGAAAAT+GGG 0.504470 8_1:+70263193 Msa1210930:CDS
GAGGTTAGGGTTACGAAATG+GGG 0.509056 8_1:-70259725 None:intergenic
CAAGATATGCATAATCAGCC+AGG 0.515323 8_1:-70265036 None:intergenic
AAGATTAAACTCGTTGATGT+AGG 0.520131 8_1:+70260001 Msa1210930:CDS
CAACAGTAGTTGAGTGCAGC+GGG 0.521542 8_1:+70259561 Msa1210930:five_prime_UTR
TAGACTGACTTTGAAACTCA+TGG 0.526077 8_1:+70265092 Msa1210930:three_prime_UTR
CTACCGTTGGTTCGTGTTGG+GGG 0.530014 8_1:+70261412 Msa1210930:CDS
ATTCGTGATTGTCAATATGT+GGG 0.532915 8_1:+70265202 Msa1210930:three_prime_UTR
ACTAAAGAACCATTGTAAGA+TGG 0.535093 8_1:+70264362 Msa1210930:exon
CGGGGATATTTCATTGGGGT+GGG 0.541919 8_1:-70264323 None:intergenic
TTGAACCATTGTCTGAGAGA+AGG 0.544739 8_1:+70264442 Msa1210930:three_prime_UTR
TCATTATTGCAAGTATGCTC+AGG 0.550979 8_1:+70263220 Msa1210930:CDS
ACGGGGATATTTCATTGGGG+TGG 0.555509 8_1:-70264324 None:intergenic
GCAATGGCTAAAACTACTCC+AGG 0.556751 8_1:-70260040 None:intergenic
CGGGTCCTTCTCTCAGACAA+TGG 0.557952 8_1:-70264447 None:intergenic
CTTTGCCCTATCCTTCACTC+AGG 0.558638 8_1:-70265328 None:intergenic
TACTGCTGTCATATGTCTGA+AGG 0.559673 8_1:+70264295 Msa1210930:CDS
CAGCAGTACGCTGACCATAT+GGG 0.560427 8_1:-70264280 None:intergenic
CACACTTCTTCAATGGAACA+AGG 0.562214 8_1:+70259781 Msa1210930:CDS
CCTTAATAATAATAAATCAC+AGG 0.562249 8_1:-70265065 None:intergenic
TCTACAAACACCTTACGCAC+CGG 0.562620 8_1:+70259660 Msa1210930:CDS
TATGATCTTGGCTTTCAACA+TGG 0.562656 8_1:-70265278 None:intergenic
GTCGCTCGTGCACATCATAC+GGG 0.588578 8_1:-70264466 None:intergenic
AGGTTCATCAATGTCTCCAA+AGG 0.589384 8_1:-70264803 None:intergenic
ATAACGTGAAAGCGCGCGGT+GGG 0.589452 8_1:+70259584 Msa1210930:five_prime_UTR
GGAGACATTGATGAACCTGA+AGG 0.594216 8_1:+70264808 Msa1210930:three_prime_UTR
CTAAGCCTGAGTGAAGGATA+GGG 0.594321 8_1:+70265323 Msa1210930:three_prime_UTR
CACTTGACCTGGTCTAGCAA+TGG 0.594471 8_1:-70260056 None:intergenic
CACATATTGACAATCACGAA+TGG 0.598174 8_1:-70265200 None:intergenic
AATTTGGTCTTTCTGGCGAG+AGG 0.598274 8_1:-70259744 None:intergenic
GGAATGTTTATTGCTGCCAA+AGG 0.598992 8_1:+70261433 Msa1210930:CDS
ATAGGATTGGGTCAGAAGAA+CGG 0.611975 8_1:-70264411 None:intergenic
GTGTTGCTAGCCGTTTGTAG+TGG 0.624500 8_1:-70259539 None:intergenic
CAATGGAGGCAAAATTGCGA+GGG 0.627212 8_1:-70259939 None:intergenic
GTTGATGTAGGAACTGGTGC+AGG 0.629428 8_1:+70260013 Msa1210930:CDS
AATCTCATGTGACAATGACA+AGG 0.631485 8_1:+70264840 Msa1210930:three_prime_UTR
GATAACGTGAAAGCGCGCGG+TGG 0.639703 8_1:+70259583 Msa1210930:five_prime_UTR
AGTTATGGAAAGACACATTG+AGG 0.642256 8_1:+70259913 Msa1210930:CDS
TCAATGGAGGCAAAATTGCG+AGG 0.642917 8_1:-70259940 None:intergenic
ATATAATTATCGCTCAATGG+AGG 0.646223 8_1:-70259953 None:intergenic
TGCCAAAGGTCACGATCCTG+AGG 0.646495 8_1:+70261447 Msa1210930:CDS
AGGTTAGGGTTACGAAATGG+GGG 0.648178 8_1:-70259724 None:intergenic
AAGATATGCATAATCAGCCA+GGG 0.655520 8_1:-70265035 None:intergenic
ATCTCATGTGACAATGACAA+GGG 0.658652 8_1:+70264841 Msa1210930:three_prime_UTR
TATGATATGAGAGTAAACGT+TGG 0.663209 8_1:-70265161 None:intergenic
AAGAGCCTAAGCCTGAGTGA+AGG 0.665069 8_1:+70265317 Msa1210930:three_prime_UTR
GTTGGTGTCCCAGGAAAACG+GGG 0.669785 8_1:-70264341 None:intergenic
GTACGTTGCCATATGTGTGA+TGG 0.670690 8_1:+70264890 Msa1210930:three_prime_UTR
TGACAATTAACTGTTTCTAG+GGG 0.671633 8_1:+70259463 Msa1210930:five_prime_UTR
AGTGAGCATCCATCTTACAA+TGG 0.672140 8_1:-70264371 None:intergenic
ACAACAGTAGTTGAGTGCAG+CGG 0.682302 8_1:+70259560 Msa1210930:five_prime_UTR
AAAACGGGGATATTTCATTG+GGG 0.753527 8_1:-70264327 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAATATAGTTTTTTATTCA+GGG - chr8_1:70261820-70261839 None:intergenic 10.0%
!!! TTAAATATAGTTTTTTATTC+AGG - chr8_1:70261821-70261840 None:intergenic 10.0%
!! AATAAATAAACAATAATAAG+AGG - chr8_1:70262687-70262706 None:intergenic 10.0%
!!! TTTTTTTTATATATATGACA+AGG - chr8_1:70264649-70264668 None:intergenic 10.0%
!!! TAAAGTACTATTAAATTATC+AGG - chr8_1:70260949-70260968 None:intergenic 15.0%
!!! ATCTTGAATATTTGATAATA+CGG - chr8_1:70261031-70261050 None:intergenic 15.0%
!! AATATTTAGAAAAGAGAAAA+CGG + chr8_1:70261775-70261794 Msa1210930:intron 15.0%
!!! AAATATAGTTTTTTATTCAG+GGG - chr8_1:70261819-70261838 None:intergenic 15.0%
!!! ATAACTGATTTTTAAATTAC+TGG - chr8_1:70261938-70261957 None:intergenic 15.0%
!!! GTTTTTTCAATTGAAAATTA+AGG + chr8_1:70262124-70262143 Msa1210930:intron 15.0%
!! TTATTCTTCAATACATATTA+TGG + chr8_1:70262702-70262721 Msa1210930:intron 15.0%
!!! TTATCCATGTTTTTAAAAAT+TGG - chr8_1:70262850-70262869 None:intergenic 15.0%
!!! TTTTTAAAAACATGGATAAA+AGG + chr8_1:70262851-70262870 Msa1210930:intron 15.0%
!! AATGTATTTGGTTAAAAAAT+TGG - chr8_1:70263915-70263934 None:intergenic 15.0%
!! AATAGAAATAATCAACATAA+GGG - chr8_1:70264154-70264173 None:intergenic 15.0%
!!! TCAAACTTTTTCTTATATAT+AGG + chr8_1:70264737-70264756 Msa1210930:three_prime_UTR 15.0%
!!! TTTACTTGTTATTATTATCT+TGG + chr8_1:70264959-70264978 Msa1210930:three_prime_UTR 15.0%
!! CTGTGATTTATTATTATTAA+GGG + chr8_1:70265066-70265085 Msa1210930:three_prime_UTR 15.0%
!!! TAAATTTTGATGTGTGATTT+AGG + chr8_1:70260138-70260157 Msa1210930:intron 20.0%
!! AGTTTATGAAAACAGTTTAT+AGG - chr8_1:70260316-70260335 None:intergenic 20.0%
!! AAATTAAATTGGTCATAATG+TGG - chr8_1:70261162-70261181 None:intergenic 20.0%
!!! TTCAAATAAGATTTAAGACT+GGG - chr8_1:70261634-70261653 None:intergenic 20.0%
!!! ATTCAAATAAGATTTAAGAC+TGG - chr8_1:70261635-70261654 None:intergenic 20.0%
!!! TTTTCAATTGAAAATTAAGG+AGG + chr8_1:70262127-70262146 Msa1210930:intron 20.0%
!! CAGTAATATATTGTTGAAAA+GGG - chr8_1:70262501-70262520 None:intergenic 20.0%
!!! TAGTAACACAATATTTTTGT+TGG - chr8_1:70262608-70262627 None:intergenic 20.0%
!!! ATGTCCAATTTTTAAAAACA+TGG + chr8_1:70262843-70262862 Msa1210930:intron 20.0%
!! TTACACACAAAATTAATAGA+TGG - chr8_1:70263142-70263161 None:intergenic 20.0%
!!! AATTTTGTGTGTAATAAACT+CGG + chr8_1:70263148-70263167 Msa1210930:intron 20.0%
!!! TTTTAGGAATAAAACAAACT+TGG - chr8_1:70263295-70263314 None:intergenic 20.0%
!!! AAGTTTGTTTTATTCCTAAA+AGG + chr8_1:70263294-70263313 Msa1210930:intron 20.0%
!! TATTAAAATCCTATATTTGC+AGG - chr8_1:70263365-70263384 None:intergenic 20.0%
!! ATATTCAAAAATCTGTATGT+TGG - chr8_1:70263444-70263463 None:intergenic 20.0%
!!! ATAGAAGATAACTTTTTGTT+AGG + chr8_1:70263688-70263707 Msa1210930:intron 20.0%
!!! AATTTGCTGTTTTATTTCAT+AGG + chr8_1:70263728-70263747 Msa1210930:intron 20.0%
!! ATTATGAGTTTCTTTACTTA+AGG - chr8_1:70263768-70263787 None:intergenic 20.0%
!! TTATACAATACAATGGATAT+AGG - chr8_1:70263791-70263810 None:intergenic 20.0%
!! AATTTCGTTATACAATACAA+TGG - chr8_1:70263798-70263817 None:intergenic 20.0%
!! TCAACAAAAGTTAATGTATT+TGG - chr8_1:70263927-70263946 None:intergenic 20.0%
!! AATATAATCAAAAGTCAAAC+AGG - chr8_1:70264089-70264108 None:intergenic 20.0%
!!! TTTTTAGGAATAGTTAATTC+TGG + chr8_1:70264123-70264142 Msa1210930:intron 20.0%
!! GAATAGAAATAATCAACATA+AGG - chr8_1:70264155-70264174 None:intergenic 20.0%
!! CCTTAATAATAATAAATCAC+AGG - chr8_1:70265068-70265087 None:intergenic 20.0%
!! CCTGTGATTTATTATTATTA+AGG + chr8_1:70265065-70265084 Msa1210930:three_prime_UTR 20.0%
! TAAAGAAGTGAATGAAGTTA+TGG + chr8_1:70259898-70259917 Msa1210930:CDS 25.0%
! AATAACACTTTGGTTACAAA+AGG - chr8_1:70260107-70260126 None:intergenic 25.0%
!! ACAATTTATTTGCAGCTTTT+AGG + chr8_1:70260206-70260225 Msa1210930:intron 25.0%
!! TTATTTTCATAAGTTCTCCA+GGG - chr8_1:70260341-70260360 None:intergenic 25.0%
!! CAGATTGACTTTATTCTATT+TGG - chr8_1:70260464-70260483 None:intergenic 25.0%
! ATCGATAAACTAATCAAAAC+TGG + chr8_1:70260624-70260643 Msa1210930:intron 25.0%
! ATTCAATGTGTTTCTTGAAA+TGG + chr8_1:70260811-70260830 Msa1210930:intron 25.0%
!! TAAATACTTAACTTGATCCT+TGG + chr8_1:70260977-70260996 Msa1210930:intron 25.0%
!! TTGAATATTTGATAATACGG+AGG - chr8_1:70261028-70261047 None:intergenic 25.0%
!!! TGCAATTTTAAGTATCATTG+TGG - chr8_1:70261055-70261074 None:intergenic 25.0%
! GGACTAGAATGAAATTAAAT+TGG - chr8_1:70261173-70261192 None:intergenic 25.0%
! AAATTAGTCCTTTGAATTGT+AGG - chr8_1:70261298-70261317 None:intergenic 25.0%
!! AAGTGTTATTATGGAAGTAA+AGG - chr8_1:70261332-70261351 None:intergenic 25.0%
!! AATAACCACAAGTGTTATTA+TGG - chr8_1:70261341-70261360 None:intergenic 25.0%
!!! TTGTGGTTATTTTCTTACTA+TGG + chr8_1:70261350-70261369 Msa1210930:intron 25.0%
! TTTACTATTTAGTGATGCTT+CGG + chr8_1:70261527-70261546 Msa1210930:intron 25.0%
! TTTATTAACCACAAGAATTG+TGG + chr8_1:70261589-70261608 Msa1210930:intron 25.0%
! TTATTAACCACAAGAATTGT+GGG + chr8_1:70261590-70261609 Msa1210930:intron 25.0%
! ATATGAAAATTAGATCAGAC+TGG + chr8_1:70261843-70261862 Msa1210930:intron 25.0%
!! TCAACAGAGAAATTGTATTT+TGG - chr8_1:70262040-70262059 None:intergenic 25.0%
! TTCAATTGAAAAAACAAGAG+AGG - chr8_1:70262119-70262138 None:intergenic 25.0%
! TTCAATTGAAAAAACAAGAG+AGG - chr8_1:70262119-70262138 None:intergenic 25.0%
!!! ATTCTCTCTTTCAAGTTTTA+AGG + chr8_1:70262222-70262241 Msa1210930:intron 25.0%
!!! TTCTCTCTTTCAAGTTTTAA+GGG + chr8_1:70262223-70262242 Msa1210930:intron 25.0%
! AACAAGTTAACAACTTTAAG+TGG - chr8_1:70262393-70262412 None:intergenic 25.0%
! CCAGTAATATATTGTTGAAA+AGG - chr8_1:70262502-70262521 None:intergenic 25.0%
!! CCTTTTCAACAATATATTAC+TGG + chr8_1:70262499-70262518 Msa1210930:intron 25.0%
! AATCAGACCGATATTATTAA+GGG + chr8_1:70262565-70262584 Msa1210930:intron 25.0%
! TTTGTTGGTCATATTTATGT+GGG - chr8_1:70262593-70262612 None:intergenic 25.0%
!! TTTTGTTGGTCATATTTATG+TGG - chr8_1:70262594-70262613 None:intergenic 25.0%
!! CATATTATGGTTCTTTTAAG+TGG + chr8_1:70262715-70262734 Msa1210930:intron 25.0%
! AAATTGGACATGAAATTATC+CGG - chr8_1:70262834-70262853 None:intergenic 25.0%
!!! CATGAAGTTTTATATTGACA+CGG - chr8_1:70262968-70262987 None:intergenic 25.0%
! CACACTATCATTTAATGATT+TGG + chr8_1:70263025-70263044 Msa1210930:intron 25.0%
!! ACTATCATTTAATGATTTGG+TGG + chr8_1:70263028-70263047 Msa1210930:intron 25.0%
! ATATAGCAAGAGTTAAGTTA+CGG - chr8_1:70263261-70263280 None:intergenic 25.0%
!!! ATAGCATTTTGATTCCTTTT+AGG - chr8_1:70263311-70263330 None:intergenic 25.0%
!! AATATATATTTTCAGTGACG+TGG + chr8_1:70263381-70263400 Msa1210930:intron 25.0%
!!! TTTTTTACTCAAAAAATGCG+AGG + chr8_1:70263566-70263585 Msa1210930:intron 25.0%
!! TTTTTACTCAAAAAATGCGA+GGG + chr8_1:70263567-70263586 Msa1210930:intron 25.0%
!!! ACTGATAGTTTTAGTTGAAA+TGG + chr8_1:70263651-70263670 Msa1210930:intron 25.0%
! TTGTATAACGAAATTCTAGT+TGG + chr8_1:70263803-70263822 Msa1210930:intron 25.0%
!! CCTATTTACAAGAGAAATTT+TGG - chr8_1:70263950-70263969 None:intergenic 25.0%
! CCAAAATTTCTCTTGTAAAT+AGG + chr8_1:70263947-70263966 Msa1210930:intron 25.0%
! ATAGTGAAATTTAGTCACTT+AGG - chr8_1:70264037-70264056 None:intergenic 25.0%
! TCTGTTTATTGTTTCATCAT+CGG + chr8_1:70264194-70264213 Msa1210930:intron 25.0%
! TCAAAAAAAGTGATAGGATT+GGG - chr8_1:70264426-70264445 None:intergenic 25.0%
! TTCAAAAAAAGTGATAGGAT+TGG - chr8_1:70264427-70264446 None:intergenic 25.0%
! AATGGTTCAAAAAAAGTGAT+AGG - chr8_1:70264432-70264451 None:intergenic 25.0%
!!! AGTGTTGTTTTTTGAATAGT+AGG + chr8_1:70264541-70264560 Msa1210930:three_prime_UTR 25.0%
!!! GTGTTGTTTTTTGAATAGTA+GGG + chr8_1:70264542-70264561 Msa1210930:three_prime_UTR 25.0%
!!! TGTTGTTTTTTGAATAGTAG+GGG + chr8_1:70264543-70264562 Msa1210930:three_prime_UTR 25.0%
! TTCTTATATATAGGACCAAA+AGG + chr8_1:70264746-70264765 Msa1210930:three_prime_UTR 25.0%
!!! AGCTTTTAAAACATACTTCT+AGG - chr8_1:70264923-70264942 None:intergenic 25.0%
!!! TAGAAGTATGTTTTAAAAGC+TGG + chr8_1:70264922-70264941 Msa1210930:three_prime_UTR 25.0%
! AACAAGTAAACAAAGATAGA+AGG - chr8_1:70264949-70264968 None:intergenic 25.0%
! ATCATACTACTCGTATAATT+AGG + chr8_1:70265128-70265147 Msa1210930:three_prime_UTR 25.0%
! TCATACTACTCGTATAATTA+GGG + chr8_1:70265129-70265148 Msa1210930:three_prime_UTR 25.0%
!! GTGACAATTAACTGTTTCTA+GGG + chr8_1:70259462-70259481 Msa1210930:five_prime_UTR 30.0%
!! TGACAATTAACTGTTTCTAG+GGG + chr8_1:70259463-70259482 Msa1210930:five_prime_UTR 30.0%
! TTTTTCACTCCAAGAAAGAA+TGG - chr8_1:70259507-70259526 None:intergenic 30.0%
!! TCAATAACTTGCAGTTTTCT+CGG + chr8_1:70259630-70259649 Msa1210930:CDS 30.0%
ATATAATTATCGCTCAATGG+AGG - chr8_1:70259956-70259975 None:intergenic 30.0%
CTGATATAATTATCGCTCAA+TGG - chr8_1:70259959-70259978 None:intergenic 30.0%
AACGAGTTTAATCTTATCGA+TGG - chr8_1:70259996-70260015 None:intergenic 30.0%
AAGATTAAACTCGTTGATGT+AGG + chr8_1:70260001-70260020 Msa1210930:CDS 30.0%
TAAATGAAATTCACTTGACC+TGG - chr8_1:70260070-70260089 None:intergenic 30.0%
AGCACTTATGTATACAAACA+GGG - chr8_1:70260164-70260183 None:intergenic 30.0%
AAGCACTTATGTATACAAAC+AGG - chr8_1:70260165-70260184 None:intergenic 30.0%
!! CTTATTTTCATAAGTTCTCC+AGG - chr8_1:70260342-70260361 None:intergenic 30.0%
TGACTTTATTCTATTTGGAC+TGG - chr8_1:70260459-70260478 None:intergenic 30.0%
AACAAACATAAGCACTTATG+AGG - chr8_1:70260598-70260617 None:intergenic 30.0%
TGTGTTTCTTGAAATGGTAA+TGG + chr8_1:70260817-70260836 Msa1210930:intron 30.0%
GTGTTTCTTGAAATGGTAAT+GGG + chr8_1:70260818-70260837 Msa1210930:intron 30.0%
ACGAGAATATTAGGTACTAT+TGG + chr8_1:70260917-70260936 Msa1210930:intron 30.0%
CGAGAATATTAGGTACTATT+GGG + chr8_1:70260918-70260937 Msa1210930:intron 30.0%
GAGAATATTAGGTACTATTG+GGG + chr8_1:70260919-70260938 Msa1210930:intron 30.0%
TAATACCACAATCAAACAGA+GGG - chr8_1:70261097-70261116 None:intergenic 30.0%
TTAATACCACAATCAAACAG+AGG - chr8_1:70261098-70261117 None:intergenic 30.0%
TCCTATTGTTGGAATTTGAA+GGG - chr8_1:70261194-70261213 None:intergenic 30.0%
ATCCTATTGTTGGAATTTGA+AGG - chr8_1:70261195-70261214 None:intergenic 30.0%
AATCAAATGCATCCTATTGT+TGG - chr8_1:70261205-70261224 None:intergenic 30.0%
GATTAAAACCTTGAAATTCG+AGG + chr8_1:70261221-70261240 Msa1210930:intron 30.0%
! TCTGGAATATCGATAATTTG+AGG + chr8_1:70261255-70261274 Msa1210930:intron 30.0%
CTGGAATATCGATAATTTGA+GGG + chr8_1:70261256-70261275 Msa1210930:intron 30.0%
TACTTCCATAATAACACTTG+TGG + chr8_1:70261333-70261352 Msa1210930:intron 30.0%
!! TGTTGATTCTTATCTTATGC+TGG + chr8_1:70261502-70261521 Msa1210930:intron 30.0%
TAGAAAAGAGAAAACGGAAT+AGG + chr8_1:70261781-70261800 Msa1210930:intron 30.0%
AAACTGTGAACCATTTCATT+GGG + chr8_1:70261882-70261901 Msa1210930:intron 30.0%
GCTTTAACTAGTCATTAAAC+AGG - chr8_1:70262008-70262027 None:intergenic 30.0%
GTATTGAACCATGGTTATTA+AGG + chr8_1:70262060-70262079 Msa1210930:intron 30.0%
!!! TCTCTCTTTCAAGTTTTAAG+GGG + chr8_1:70262224-70262243 Msa1210930:intron 30.0%
!!! AGTTGTTTGTTTTCTAGCTA+AGG + chr8_1:70262263-70262282 Msa1210930:intron 30.0%
! AAGGTGCAATTTTCAATTGA+AGG + chr8_1:70262282-70262301 Msa1210930:intron 30.0%
AACAACTTTAAGTGGAACAA+TGG - chr8_1:70262385-70262404 None:intergenic 30.0%
GAATCAGACCGATATTATTA+AGG + chr8_1:70262564-70262583 Msa1210930:intron 30.0%
ATCAGACCGATATTATTAAG+GGG + chr8_1:70262566-70262585 Msa1210930:intron 30.0%
GTTATAATTGTGTGTGTTAG+CGG - chr8_1:70262798-70262817 None:intergenic 30.0%
!! TTGGGTGTGTATTTTATTTG+AGG - chr8_1:70262911-70262930 None:intergenic 30.0%
GTTCACAATTTCAAATCTGT+GGG - chr8_1:70263120-70263139 None:intergenic 30.0%
TATAGCAAGAGTTAAGTTAC+GGG - chr8_1:70263260-70263279 None:intergenic 30.0%
ATTTGTGTTCCTGCAAATAT+AGG + chr8_1:70263353-70263372 Msa1210930:intron 30.0%
AACCTTGAAAACTGATGTTA+CGG - chr8_1:70263485-70263504 None:intergenic 30.0%
TCCTATTTACAAGAGACATT+TGG + chr8_1:70263864-70263883 Msa1210930:intron 30.0%
CCTATTTACAAGAGACATTT+GGG + chr8_1:70263865-70263884 Msa1210930:intron 30.0%
TCAACAAAAATGGATGTATC+TGG + chr8_1:70263888-70263907 Msa1210930:intron 30.0%
ATTTCTCTTGTAAATAGGAC+CGG + chr8_1:70263952-70263971 Msa1210930:intron 30.0%
AGGGAGTAATTCCTAATTAA+AGG + chr8_1:70263975-70263994 Msa1210930:intron 30.0%
TGCTAGAACTTCCTTTAATT+AGG - chr8_1:70263989-70264008 None:intergenic 30.0%
GCGTAAGAAATGTGTATTTA+CGG - chr8_1:70264013-70264032 None:intergenic 30.0%
AATCAAAAGTCAAACAGGTA+GGG - chr8_1:70264084-70264103 None:intergenic 30.0%
TAATCAAAAGTCAAACAGGT+AGG - chr8_1:70264085-70264104 None:intergenic 30.0%
TTGATTATATTTGTCTTCCC+TGG + chr8_1:70264098-70264117 Msa1210930:intron 30.0%
AACTATTCCTAAAAATGCCA+GGG - chr8_1:70264118-70264137 None:intergenic 30.0%
TAACTATTCCTAAAAATGCC+AGG - chr8_1:70264119-70264138 None:intergenic 30.0%
AGAAATGAAACACAAACTCT+TGG - chr8_1:70264177-70264196 None:intergenic 30.0%
TCTTACAATGGTTCTTTAGT+TGG - chr8_1:70264362-70264381 None:intergenic 30.0%
ACTAAAGAACCATTGTAAGA+TGG + chr8_1:70264362-70264381 Msa1210930:exon 30.0%
TATGATTTACTTTGAGCCTT+TGG + chr8_1:70264787-70264806 Msa1210930:three_prime_UTR 30.0%
TATGATATGAGAGTAAACGT+TGG - chr8_1:70265164-70265183 None:intergenic 30.0%
CTCATATCATATCTTTCAGT+TGG + chr8_1:70265173-70265192 Msa1210930:three_prime_UTR 30.0%
ATTCGTGATTGTCAATATGT+GGG + chr8_1:70265202-70265221 Msa1210930:three_prime_UTR 30.0%
!!! AACTGTTTCTAGGGGTATTT+TGG + chr8_1:70259471-70259490 Msa1210930:five_prime_UTR 35.0%
GAAGCAAAATCCACTACAAA+CGG + chr8_1:70259529-70259548 Msa1210930:five_prime_UTR 35.0%
GACAGAGAGTTGTATATTTC+CGG - chr8_1:70259682-70259701 None:intergenic 35.0%
! AGAGATGAATTTGGTCTTTC+TGG - chr8_1:70259754-70259773 None:intergenic 35.0%
TGTCAACGTAGAGATGAATT+TGG - chr8_1:70259763-70259782 None:intergenic 35.0%
AGTTATGGAAAGACACATTG+AGG + chr8_1:70259913-70259932 Msa1210930:CDS 35.0%
AACACTTTGGTTACAAAAGG+CGG - chr8_1:70260104-70260123 None:intergenic 35.0%
! ACCAAAGTGTTATTGTCAGA+TGG + chr8_1:70260113-70260132 Msa1210930:intron 35.0%
TCCATCTGACAATAACACTT+TGG - chr8_1:70260117-70260136 None:intergenic 35.0%
! CTGTTTTCATAAACTATCCC+TGG + chr8_1:70260321-70260340 Msa1210930:intron 35.0%
TGGTCCTTAATGCAATAGAT+TGG + chr8_1:70260644-70260663 Msa1210930:intron 35.0%
GGTCCTTAATGCAATAGATT+GGG + chr8_1:70260645-70260664 Msa1210930:intron 35.0%
CATCCCAATCTATTGCATTA+AGG - chr8_1:70260651-70260670 None:intergenic 35.0%
TCTTACAATTTGAACGTTGG+AGG - chr8_1:70260740-70260759 None:intergenic 35.0%
TCCAACGTTCAAATTGTAAG+AGG + chr8_1:70260739-70260758 Msa1210930:intron 35.0%
TCCTCTTACAATTTGAACGT+TGG - chr8_1:70260743-70260762 None:intergenic 35.0%
ACTTGATCCTTGGAATTGTA+AGG + chr8_1:70260987-70261006 Msa1210930:intron 35.0%
GATACAACCTTACAATTCCA+AGG - chr8_1:70260997-70261016 None:intergenic 35.0%
TCCCTTCAAATTCCAACAAT+AGG + chr8_1:70261190-70261209 Msa1210930:intron 35.0%
CAAATTACCCACAATTCTTG+TGG - chr8_1:70261600-70261619 None:intergenic 35.0%
! CTAGTGATTTTCTCAGTGTA+AGG - chr8_1:70261672-70261691 None:intergenic 35.0%
ATTCTTGTAGACAGTATGCA+AGG + chr8_1:70261747-70261766 Msa1210930:intron 35.0%
CAAACTGTGAACCATTTCAT+TGG + chr8_1:70261881-70261900 Msa1210930:intron 35.0%
AGAGAAGTTAGACACTTAGA+CGG - chr8_1:70261913-70261932 None:intergenic 35.0%
! GCAAACTGTCTTGATTTTAG+TGG + chr8_1:70261976-70261995 Msa1210930:intron 35.0%
TTGAACCATGGTTATTAAGG+AGG + chr8_1:70262063-70262082 Msa1210930:intron 35.0%
TGAATCCTCCTTAATAACCA+TGG - chr8_1:70262071-70262090 None:intergenic 35.0%
TTCAATTGAAGGAACAAGCA+AGG + chr8_1:70262293-70262312 Msa1210930:intron 35.0%
GATGATTTGACTCTTATCGA+TGG + chr8_1:70262336-70262355 Msa1210930:intron 35.0%
!!! TGAATTCATGTGTCGACTTT+TGG + chr8_1:70262524-70262543 Msa1210930:intron 35.0%
! TTTGGAATGAATCCCACATA+TGG + chr8_1:70262542-70262561 Msa1210930:intron 35.0%
TCAGACCGATATTATTAAGG+GGG + chr8_1:70262567-70262586 Msa1210930:intron 35.0%
CACACACAATTATAACCTAC+TGG + chr8_1:70262802-70262821 Msa1210930:intron 35.0%
TGCTTTCCTATACTTAGGTT+GGG - chr8_1:70262929-70262948 None:intergenic 35.0%
TTGACACGGAAGTTATTTGT+GGG - chr8_1:70262954-70262973 None:intergenic 35.0%
ATTGACACGGAAGTTATTTG+TGG - chr8_1:70262955-70262974 None:intergenic 35.0%
GGTTCACAATTTCAAATCTG+TGG - chr8_1:70263121-70263140 None:intergenic 35.0%
TGTGTGTAATAAACTCGGAT+AGG + chr8_1:70263153-70263172 Msa1210930:intron 35.0%
TGAAAACGCCATCAAGAAAA+TGG + chr8_1:70263192-70263211 Msa1210930:CDS 35.0%
GAAAACGCCATCAAGAAAAT+GGG + chr8_1:70263193-70263212 Msa1210930:CDS 35.0%
TCATTATTGCAAGTATGCTC+AGG + chr8_1:70263220-70263239 Msa1210930:CDS 35.0%
GTTAGAAGAACTATCTGACT+GGG - chr8_1:70263422-70263441 None:intergenic 35.0%
ATTCGAACTAAGAGAATGAG+GGG - chr8_1:70263519-70263538 None:intergenic 35.0%
CATTCGAACTAAGAGAATGA+GGG - chr8_1:70263520-70263539 None:intergenic 35.0%
TCATTCGAACTAAGAGAATG+AGG - chr8_1:70263521-70263540 None:intergenic 35.0%
TTCTCTTAGTTCGAATGATC+TGG + chr8_1:70263523-70263542 Msa1210930:intron 35.0%
TAGTATGTACCTTGATCGAA+AGG - chr8_1:70263620-70263639 None:intergenic 35.0%
TATCTTCTATCATTCAGCCT+CGG - chr8_1:70263678-70263697 None:intergenic 35.0%
ATGTCTCTTGTAAATAGGAC+CGG - chr8_1:70263863-70263882 None:intergenic 35.0%
CCCAAATGTCTCTTGTAAAT+AGG - chr8_1:70263868-70263887 None:intergenic 35.0%
GACATTTGGGTCAACAAAAA+TGG + chr8_1:70263878-70263897 Msa1210930:intron 35.0%
TAATTAGGAATTACTCCCTC+CGG - chr8_1:70263974-70263993 None:intergenic 35.0%
GTTTATTGTTTCATCATCGG+TGG + chr8_1:70264197-70264216 Msa1210930:intron 35.0%
AAAACGGGGATATTTCATTG+GGG - chr8_1:70264330-70264349 None:intergenic 35.0%
GAAAACGGGGATATTTCATT+GGG - chr8_1:70264331-70264350 None:intergenic 35.0%
! ACCTGATTTTCTGCTCATAT+AGG + chr8_1:70264487-70264506 Msa1210930:three_prime_UTR 35.0%
TCCTATATGAGCAGAAAATC+AGG - chr8_1:70264491-70264510 None:intergenic 35.0%
!!! TCTCGTCTAAGTTTTGAAGT+AGG - chr8_1:70264699-70264718 None:intergenic 35.0%
! TATAGGACCAAAAGGACTTT+TGG + chr8_1:70264754-70264773 Msa1210930:three_prime_UTR 35.0%
! GTAATCACCAAAAGTCCTTT+TGG - chr8_1:70264764-70264783 None:intergenic 35.0%
AATCTCATGTGACAATGACA+AGG + chr8_1:70264840-70264859 Msa1210930:three_prime_UTR 35.0%
ATCTCATGTGACAATGACAA+GGG + chr8_1:70264841-70264860 Msa1210930:three_prime_UTR 35.0%
GATAATTGCCATCACACATA+TGG - chr8_1:70264901-70264920 None:intergenic 35.0%
AAGATATGCATAATCAGCCA+GGG - chr8_1:70265038-70265057 None:intergenic 35.0%
!! TAGACTGACTTTGAAACTCA+TGG + chr8_1:70265092-70265111 Msa1210930:three_prime_UTR 35.0%
CACATATTGACAATCACGAA+TGG - chr8_1:70265203-70265222 None:intergenic 35.0%
CATTCGTGATTGTCAATATG+TGG + chr8_1:70265201-70265220 Msa1210930:three_prime_UTR 35.0%
! TATGATCTTGGCTTTCAACA+TGG - chr8_1:70265281-70265300 None:intergenic 35.0%
!! TTTGAGCACTGATATGATCT+TGG - chr8_1:70265293-70265312 None:intergenic 35.0%
!! ATAACTTGCAGTTTTCTCGG+TGG + chr8_1:70259633-70259652 Msa1210930:CDS 40.0%
TTGTATATTTCCGGTGCGTA+AGG - chr8_1:70259673-70259692 None:intergenic 40.0%
AGAGGTTAGGGTTACGAAAT+GGG - chr8_1:70259729-70259748 None:intergenic 40.0%
ACGTTGACACACTTCTTCAA+TGG + chr8_1:70259774-70259793 Msa1210930:CDS 40.0%
CACACTTCTTCAATGGAACA+AGG + chr8_1:70259781-70259800 Msa1210930:CDS 40.0%
AAACTCGTTGATGTAGGAAC+TGG + chr8_1:70260007-70260026 Msa1210930:CDS 40.0%
AGATTGGGATGTAACACTGA+TGG + chr8_1:70260660-70260679 Msa1210930:intron 40.0%
TGATGGAGTCTATGAACAAG+CGG + chr8_1:70260677-70260696 Msa1210930:intron 40.0%
AATTGTAAGAGGAAGAGCAG+AGG + chr8_1:70260750-70260769 Msa1210930:intron 40.0%
AATTTGACATAGCAGTAGCC+AGG + chr8_1:70260882-70260901 Msa1210930:intron 40.0%
ATTTGACATAGCAGTAGCCA+GGG + chr8_1:70260883-70260902 Msa1210930:intron 40.0%
GTTGCAGAGACGAGAATATT+AGG + chr8_1:70260908-70260927 Msa1210930:intron 40.0%
TTTGTCCCTCTGTTTGATTG+TGG + chr8_1:70261089-70261108 Msa1210930:intron 40.0%
GTGGTATTAAAATGCATCGC+TGG + chr8_1:70261108-70261127 Msa1210930:intron 40.0%
ACATGGTACCTCGAATTTCA+AGG - chr8_1:70261232-70261251 None:intergenic 40.0%
! TGAAATTCGAGGTACCATGT+TGG + chr8_1:70261232-70261251 Msa1210930:intron 40.0%
ATCGATATTCCAGACCAACA+TGG - chr8_1:70261249-70261268 None:intergenic 40.0%
GACACAGTCCTACAATTCAA+AGG + chr8_1:70261287-70261306 Msa1210930:intron 40.0%
GGAATGTTTATTGCTGCCAA+AGG + chr8_1:70261433-70261452 Msa1210930:CDS 40.0%
TAGCATCTGTTACATACCTC+AGG - chr8_1:70261466-70261485 None:intergenic 40.0%
ACTATTTAGTGATGCTTCGG+TGG + chr8_1:70261530-70261549 Msa1210930:intron 40.0%
! AATCACTAGCTTCTCCTGTT+CGG + chr8_1:70261683-70261702 Msa1210930:intron 40.0%
TGCAATTTGTCTGTGTTTCC+CGG - chr8_1:70261717-70261736 None:intergenic 40.0%
AAGACAGTTTGCAACCAGTA+CGG - chr8_1:70261968-70261987 None:intergenic 40.0%
!! CTGTCTTGATTTTAGTGGAG+TGG + chr8_1:70261981-70262000 Msa1210930:intron 40.0%
!! CTCTGTTGAGTATTGAACCA+TGG + chr8_1:70262051-70262070 Msa1210930:intron 40.0%
GCAAGGAAACGAGAGAAAAA+AGG + chr8_1:70262310-70262329 Msa1210930:intron 40.0%
ATCGGTCTGATTCCATATGT+GGG - chr8_1:70262557-70262576 None:intergenic 40.0%
TATCGGTCTGATTCCATATG+TGG - chr8_1:70262558-70262577 None:intergenic 40.0%
!! TATAACCTACTGGCTTCATC+CGG + chr8_1:70262812-70262831 Msa1210930:intron 40.0%
TACACACCCAACCTAAGTAT+AGG + chr8_1:70262920-70262939 Msa1210930:intron 40.0%
CTGCTTTCCTATACTTAGGT+TGG - chr8_1:70262930-70262949 None:intergenic 40.0%
TTTGCAGTTTGCGATGATAG+TGG - chr8_1:70263000-70263019 None:intergenic 40.0%
! TGATGCACCCATTTTCTTGA+TGG - chr8_1:70263203-70263222 None:intergenic 40.0%
GGTTAGAAGAACTATCTGAC+TGG - chr8_1:70263423-70263442 None:intergenic 40.0%
! AGCCGTAACATCAGTTTTCA+AGG + chr8_1:70263480-70263499 Msa1210930:intron 40.0%
GAGGGTAAACTGTAAAAGTC+AGG + chr8_1:70263585-70263604 Msa1210930:intron 40.0%
!!! GTTTTAGTTGAAATGGACCG+AGG + chr8_1:70263658-70263677 Msa1210930:intron 40.0%
TCACTAACAATTACTCCCTC+CGG + chr8_1:70263841-70263860 Msa1210930:intron 40.0%
! TTGTCTTCCCTGGCATTTTT+AGG + chr8_1:70264108-70264127 Msa1210930:intron 40.0%
TACTGCTGTCATATGTCTGA+AGG + chr8_1:70264295-70264314 Msa1210930:CDS 40.0%
GGAAAACGGGGATATTTCAT+TGG - chr8_1:70264332-70264351 None:intergenic 40.0%
! ATGAAATATCCCCGTTTTCC+TGG + chr8_1:70264332-70264351 Msa1210930:CDS 40.0%
! TGAAATATCCCCGTTTTCCT+GGG + chr8_1:70264333-70264352 Msa1210930:CDS 40.0%
AGTGAGCATCCATCTTACAA+TGG - chr8_1:70264374-70264393 None:intergenic 40.0%
AAGATGGATGCTCACTCTAT+TGG + chr8_1:70264378-70264397 Msa1210930:exon 40.0%
ATAGGATTGGGTCAGAAGAA+CGG - chr8_1:70264414-70264433 None:intergenic 40.0%
AGGTTCATCAATGTCTCCAA+AGG - chr8_1:70264806-70264825 None:intergenic 40.0%
! GAGATTTTTGCATTGCCTTC+AGG - chr8_1:70264826-70264845 None:intergenic 40.0%
!! TTGATTTGTTCTCAACTCCC+TGG + chr8_1:70265018-70265037 Msa1210930:three_prime_UTR 40.0%
CAAGATATGCATAATCAGCC+AGG - chr8_1:70265039-70265058 None:intergenic 40.0%
!!! TCTAGGGGTATTTTGGTACG+AGG + chr8_1:70259478-70259497 Msa1210930:five_prime_UTR 45.0%
!!! CTAGGGGTATTTTGGTACGA+GGG + chr8_1:70259479-70259498 Msa1210930:five_prime_UTR 45.0%
ACGAGGGAACCATTCTTTCT+TGG + chr8_1:70259495-70259514 Msa1210930:five_prime_UTR 45.0%
ACAACAGTAGTTGAGTGCAG+CGG + chr8_1:70259560-70259579 Msa1210930:five_prime_UTR 45.0%
TCTACAAACACCTTACGCAC+CGG + chr8_1:70259660-70259679 Msa1210930:CDS 45.0%
AGGTTAGGGTTACGAAATGG+GGG - chr8_1:70259727-70259746 None:intergenic 45.0%
GAGGTTAGGGTTACGAAATG+GGG - chr8_1:70259728-70259747 None:intergenic 45.0%
GAGAGGTTAGGGTTACGAAA+TGG - chr8_1:70259730-70259749 None:intergenic 45.0%
! AATTTGGTCTTTCTGGCGAG+AGG - chr8_1:70259747-70259766 None:intergenic 45.0%
CAATGGAGGCAAAATTGCGA+GGG - chr8_1:70259942-70259961 None:intergenic 45.0%
TCAATGGAGGCAAAATTGCG+AGG - chr8_1:70259943-70259962 None:intergenic 45.0%
GCAATGGCTAAAACTACTCC+AGG - chr8_1:70260043-70260062 None:intergenic 45.0%
!! GTTTTAGCCATTGCTAGACC+AGG + chr8_1:70260049-70260068 Msa1210930:CDS 45.0%
GAGCACGTTGTGGATGTTAT+CGG + chr8_1:70260712-70260731 Msa1210930:intron 45.0%
AACGGTAGACAATACTCAGC+TGG - chr8_1:70261400-70261419 None:intergenic 45.0%
! AGCTGAGTATTGTCTACCGT+TGG + chr8_1:70261399-70261418 Msa1210930:intron 45.0%
CTCCTGTTCGGTAAATAGAC+CGG + chr8_1:70261695-70261714 Msa1210930:intron 45.0%
TCCTGTTCGGTAAATAGACC+GGG + chr8_1:70261696-70261715 Msa1210930:intron 45.0%
!! TCAGACTGGATTAGTCTGAC+TGG + chr8_1:70261857-70261876 Msa1210930:intron 45.0%
CTGTGAACCATTTCATTGGG+TGG + chr8_1:70261885-70261904 Msa1210930:intron 45.0%
CAGTTATTGAACCACCGTAC+TGG + chr8_1:70261951-70261970 Msa1210930:intron 45.0%
GTGGGCCCCCTTAATAATAT+CGG - chr8_1:70262575-70262594 None:intergenic 45.0%
ATTATCCGGATGAAGCCAGT+AGG - chr8_1:70262820-70262839 None:intergenic 45.0%
GGGTCTGCTTTCCTATACTT+AGG - chr8_1:70262934-70262953 None:intergenic 45.0%
AACTAAGAGAATGAGGGGAG+GGG - chr8_1:70263514-70263533 None:intergenic 45.0%
GAACTAAGAGAATGAGGGGA+GGG - chr8_1:70263515-70263534 None:intergenic 45.0%
CTAGCTGTACCTTTCGATCA+AGG + chr8_1:70263608-70263627 Msa1210930:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG - chr8_1:70263956-70263975 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG - chr8_1:70263955-70263974 None:intergenic 45.0%
TCTCTTGTAAATAGGACCGG+AGG + chr8_1:70263955-70263974 Msa1210930:intron 45.0%
CTCTTGTAAATAGGACCGGA+GGG + chr8_1:70263956-70263975 Msa1210930:intron 45.0%
CCACTGAACATGCAACATCA+AGG - chr8_1:70264250-70264269 None:intergenic 45.0%
CCTTGATGTTGCATGTTCAG+TGG + chr8_1:70264247-70264266 Msa1210930:intron 45.0%
! TAGTTGGTGTCCCAGGAAAA+CGG - chr8_1:70264346-70264365 None:intergenic 45.0%
GGAGACATTGATGAACCTGA+AGG + chr8_1:70264808-70264827 Msa1210930:three_prime_UTR 45.0%
GTACGTTGCCATATGTGTGA+TGG + chr8_1:70264890-70264909 Msa1210930:three_prime_UTR 45.0%
CTAAGCCTGAGTGAAGGATA+GGG + chr8_1:70265323-70265342 Msa1210930:three_prime_UTR 45.0%
!! TATATATAAAAAAAAAAAGT+TGG + chr8_1:70264654-70264673 Msa1210930:three_prime_UTR 5.0%
!! ATATATAAAAAAAAAAAGTT+GGG + chr8_1:70264655-70264674 Msa1210930:three_prime_UTR 5.0%
! GTGTTGCTAGCCGTTTGTAG+TGG - chr8_1:70259542-70259561 None:intergenic 50.0%
CAACAGTAGTTGAGTGCAGC+GGG + chr8_1:70259561-70259580 Msa1210930:five_prime_UTR 50.0%
GAAATGGGGGAGATTGGATG+TGG - chr8_1:70259714-70259733 None:intergenic 50.0%
GGTTACGAAATGGGGGAGAT+TGG - chr8_1:70259720-70259739 None:intergenic 50.0%
! GTCTTTCTGGCGAGAGGTTA+GGG - chr8_1:70259741-70259760 None:intergenic 50.0%
GTTGATGTAGGAACTGGTGC+AGG + chr8_1:70260013-70260032 Msa1210930:CDS 50.0%
CACTTGACCTGGTCTAGCAA+TGG - chr8_1:70260059-70260078 None:intergenic 50.0%
! GAACAAGCGGTGCGTTTTCT+TGG + chr8_1:70260690-70260709 Msa1210930:intron 50.0%
! CGTTTTCTTGGAGCACGTTG+TGG + chr8_1:70260702-70260721 Msa1210930:intron 50.0%
!! CTTGAAATGGTAATGGGCGC+AGG + chr8_1:70260824-70260843 Msa1210930:intron 50.0%
! TTCGAGGTACCATGTTGGTC+TGG + chr8_1:70261237-70261256 Msa1210930:intron 50.0%
!! TGTCTACCGTTGGTTCGTGT+TGG + chr8_1:70261409-70261428 Msa1210930:CDS 50.0%
!! GTCTACCGTTGGTTCGTGTT+GGG + chr8_1:70261410-70261429 Msa1210930:CDS 50.0%
!! TCTACCGTTGGTTCGTGTTG+GGG + chr8_1:70261411-70261430 Msa1210930:CDS 50.0%
ATTCCCCCAACACGAACCAA+CGG - chr8_1:70261418-70261437 None:intergenic 50.0%
TACCTCAGGATCGTGACCTT+TGG - chr8_1:70261452-70261471 None:intergenic 50.0%
TCCCGGTCTATTTACCGAAC+AGG - chr8_1:70261700-70261719 None:intergenic 50.0%
ACAGTTTGCAACCAGTACGG+TGG - chr8_1:70261965-70261984 None:intergenic 50.0%
CGAACTAAGAGAATGAGGGG+AGG - chr8_1:70263516-70263535 None:intergenic 50.0%
GTGGAATCGCAAAGCCCATA+TGG + chr8_1:70264266-70264285 Msa1210930:intron 50.0%
CAGCAGTACGCTGACCATAT+GGG - chr8_1:70264283-70264302 None:intergenic 50.0%
ACAGCAGTACGCTGACCATA+TGG - chr8_1:70264284-70264303 None:intergenic 50.0%
CGGGGATATTTCATTGGGGT+GGG - chr8_1:70264326-70264345 None:intergenic 50.0%
ACGGGGATATTTCATTGGGG+TGG - chr8_1:70264327-70264346 None:intergenic 50.0%
! AGTTGGTGTCCCAGGAAAAC+GGG - chr8_1:70264345-70264364 None:intergenic 50.0%
! GGTTCTTTAGTTGGTGTCCC+AGG - chr8_1:70264353-70264372 None:intergenic 50.0%
AAGAGCCTAAGCCTGAGTGA+AGG + chr8_1:70265317-70265336 Msa1210930:three_prime_UTR 50.0%
CCTATCCTTCACTCAGGCTT+AGG - chr8_1:70265325-70265344 None:intergenic 50.0%
CCTAAGCCTGAGTGAAGGAT+AGG + chr8_1:70265322-70265341 Msa1210930:three_prime_UTR 50.0%
CTTTGCCCTATCCTTCACTC+AGG - chr8_1:70265331-70265350 None:intergenic 50.0%
! ATAACGTGAAAGCGCGCGGT+GGG + chr8_1:70259584-70259603 Msa1210930:five_prime_UTR 55.0%
!! CGCGGTGGGTTGAAGTGAAA+TGG + chr8_1:70259598-70259617 Msa1210930:exon 55.0%
! GGTCTTTCTGGCGAGAGGTT+AGG - chr8_1:70259742-70259761 None:intergenic 55.0%
AATGGGCGCAGGACAGAGTT+TGG + chr8_1:70260835-70260854 Msa1210930:intron 55.0%
ATGGGCGCAGGACAGAGTTT+GGG + chr8_1:70260836-70260855 Msa1210930:intron 55.0%
!! CTACCGTTGGTTCGTGTTGG+GGG + chr8_1:70261412-70261431 Msa1210930:CDS 55.0%
TGCCAAAGGTCACGATCCTG+AGG + chr8_1:70261447-70261466 Msa1210930:CDS 55.0%
GACGGCACCACCCAATGAAA+TGG - chr8_1:70261895-70261914 None:intergenic 55.0%
! GTTGGTGTCCCAGGAAAACG+GGG - chr8_1:70264344-70264363 None:intergenic 55.0%
GTCGCTCGTGCACATCATAC+GGG - chr8_1:70264469-70264488 None:intergenic 55.0%
GGTCGCTCGTGCACATCATA+CGG - chr8_1:70264470-70264489 None:intergenic 55.0%
! CGGGATAACGTGAAAGCGCG+CGG + chr8_1:70259580-70259599 Msa1210930:five_prime_UTR 60.0%
! GATAACGTGAAAGCGCGCGG+TGG + chr8_1:70259583-70259602 Msa1210930:five_prime_UTR 60.0%
GGAACTGGTGCAGGTCTTCC+TGG + chr8_1:70260022-70260041 Msa1210930:CDS 60.0%
TGGGCGCAGGACAGAGTTTG+GGG + chr8_1:70260837-70260856 Msa1210930:intron 60.0%
TCTCGTCTCTGCAACTGCCC+TGG - chr8_1:70260903-70260922 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 70259462 70265361 70259462 ID=Msa1210930;Name=Msa1210930
chr8_1 mRNA 70259462 70265361 70259462 ID=Msa1210930-mRNA-1;Parent=Msa1210930;Name=Msa1210930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=155|0.75|1|1|1|1|5|982|208
chr8_1 exon 70259462 70259802 70259462 ID=Msa1210930-mRNA-1:exon:23468;Parent=Msa1210930-mRNA-1
chr8_1 exon 70259878 70260070 70259878 ID=Msa1210930-mRNA-1:exon:23469;Parent=Msa1210930-mRNA-1
chr8_1 exon 70261401 70261468 70261401 ID=Msa1210930-mRNA-1:exon:23470;Parent=Msa1210930-mRNA-1
chr8_1 exon 70263175 70263241 70263175 ID=Msa1210930-mRNA-1:exon:23471;Parent=Msa1210930-mRNA-1
chr8_1 exon 70264267 70265361 70264267 ID=Msa1210930-mRNA-1:exon:23472;Parent=Msa1210930-mRNA-1
chr8_1 five_prime_UTR 70259462 70259616 70259462 ID=Msa1210930-mRNA-1:five_prime_utr;Parent=Msa1210930-mRNA-1
chr8_1 CDS 70259617 70259802 70259617 ID=Msa1210930-mRNA-1:cds;Parent=Msa1210930-mRNA-1
chr8_1 CDS 70259878 70260070 70259878 ID=Msa1210930-mRNA-1:cds;Parent=Msa1210930-mRNA-1
chr8_1 CDS 70261401 70261468 70261401 ID=Msa1210930-mRNA-1:cds;Parent=Msa1210930-mRNA-1
chr8_1 CDS 70263175 70263241 70263175 ID=Msa1210930-mRNA-1:cds;Parent=Msa1210930-mRNA-1
chr8_1 CDS 70264267 70264379 70264267 ID=Msa1210930-mRNA-1:cds;Parent=Msa1210930-mRNA-1
chr8_1 three_prime_UTR 70264380 70265361 70264380 ID=Msa1210930-mRNA-1:three_prime_utr;Parent=Msa1210930-mRNA-1
Gene Sequence

>Msa1210930

ATGGTACTACTTTTCAATAACTTGCAGTTTTCTCGGTGGACTTTCTACAAACACCTTACGCACCGGAAATATACAACTCTCTGTCAGCGCAATTCCACATCCAATCTCCCCCATTTCGTAACCCTAACCTCTCGCCAGAAAGACCAAATTCATCTCTACGTTGACACACTTCTTCAATGGAACAAGCGCATGAATCTAACTGCAGTTAAAGAAGTGAATGAAGTTATGGAAAGACACATTGAGGACTCCCTCGCAATTTTGCCTCCATTGAGCGATAATTATATCAGTCATTGCAGCAATTCCATCGATAAGATTAAACTCGTTGATGTAGGAACTGGTGCAGGTCTTCCTGGAGTAGTTTTAGCCATTGCTAGACCAGCTGAGTATTGTCTACCGTTGGTTCGTGTTGGGGGAATGTTTATTGCTGCCAAAGGTCACGATCCTGAGGATGAAGTTAAGAAAGCTGAAAACGCCATCAAGAAAATGGGTGCATCATTATTGCAAGTATGCTCAGTGGAATCGCAAAGCCCATATGGTCAGCGTACTGCTGTCATATGTCTGAAGGATCGTCCCACCCCAATGAAATATCCCCGTTTTCCTGGGACACCAACTAAAGAACCATTGTAA
Protein sequence

>Msa1210930

MVLLFNNLQFSRWTFYKHLTHRKYTTLCQRNSTSNLPHFVTLTSRQKDQIHLYVDTLLQWNKRMNLTAVKEVNEVMERHIEDSLAILPPLSDNYISHCSNSIDKIKLVDVGTGAGLPGVVLAIARPAEYCLPLVRVGGMFIAAKGHDPEDEVKKAENAIKKMGASLLQVCSVESQSPYGQRTAVICLKDRPTPMKYPRFPGTPTKEPL*