AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0621870


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621870 MtrunA17_Chr4g0071071 95.652 322 14 0 1 322 28 349 0.0 617
Msa0621870 MtrunA17_Chr2g0299421 72.325 271 70 3 57 322 1 271 8.94e-142 401
Msa0621870 MtrunA17_Chr4g0071091 66.154 260 87 1 57 315 1 260 2.95e-132 377
Msa0621870 MtrunA17_Chr2g0299401 67.045 264 82 3 64 322 4 267 3.77e-126 361
Msa0621870 MtrunA17_Chr2g0299461 57.468 308 77 3 69 322 8 315 2.63e-119 346
Msa0621870 MtrunA17_Chr1g0151361 62.745 255 92 2 68 321 7 259 7.09e-113 328
Msa0621870 MtrunA17_Chr2g0299391 61.417 254 96 2 69 320 15 268 6.70e-108 316
Msa0621870 MtrunA17_Chr1g0151381 45.070 142 58 2 173 313 5 127 3.58e-26 101
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0621870 AT3G47590.1 60.219 274 107 2 43 316 34 305 1.03e-120 349
Msa0621870 AT1G29840.1 54.693 309 129 4 10 316 9 308 6.94e-119 345
Msa0621870 AT3G47560.1 63.035 257 94 1 65 321 6 261 1.53e-117 340
Msa0621870 AT3G47560.4 59.140 279 113 1 43 321 20 297 2.20e-117 341
Msa0621870 AT3G47560.3 57.447 282 95 1 65 321 6 287 1.79e-113 330
Msa0621870 AT5G11910.1 60.474 253 99 1 62 313 15 267 2.85e-111 325
Msa0621870 AT3G47560.5 57.042 284 94 2 65 321 6 288 2.96e-111 325
Msa0621870 AT5G11910.4 60.474 253 99 1 62 313 33 285 3.06e-111 326
Msa0621870 AT3G47560.2 52.427 309 95 2 65 321 6 314 2.15e-107 316
Msa0621870 AT2G19550.1 61.508 252 89 5 70 316 5 253 4.49e-105 310
Msa0621870 AT3G47590.2 58.564 181 74 1 43 223 34 213 3.45e-75 231
Msa0621870 AT5G11910.3 60.959 146 57 0 62 207 33 178 1.08e-60 192
Msa0621870 AT5G11910.2 60.959 146 57 0 62 207 15 160 1.13e-60 191

Find 89 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAATCGTTGTTTCTGAATA+TGG 0.102039 4_2:+74152449 Msa0621870:exon
CTGATTCTTCTTCTGGTTAC+TGG 0.132186 4_2:-74152594 None:intergenic
CTGTATTAGTTACAAGTTTA+AGG 0.132500 4_2:-74157364 None:intergenic
TGCAAGGGTAAGTGAATAAT+TGG 0.233596 4_2:+74152422 Msa0621870:five_prime_UTR
GGTGCTTCTGATTCTTCTTC+TGG 0.236849 4_2:-74152601 None:intergenic
CTTCATGCATATTTGTATTT+AGG 0.242010 4_2:-74156038 None:intergenic
AAGTTCATACAATTAATTAA+AGG 0.263972 4_2:-74157254 None:intergenic
TATGATGTACCGTGTTATTT+TGG 0.266060 4_2:+74157089 Msa0621870:three_prime_UTR
GTGGGTATATTGCAAGATTC+TGG 0.270892 4_2:+74152812 Msa0621870:CDS
TCGCCAAACGGTTTGATTCT+AGG 0.277406 4_2:-74154506 None:intergenic
TTGTTTAAGGTCGATTAAAA+AGG 0.307143 4_2:-74152267 None:intergenic
ATAACACGGTACATCATATC+AGG 0.319431 4_2:-74157084 None:intergenic
TCTGGTTACTGGTTTGTGAT+TGG 0.324929 4_2:-74152583 None:intergenic
CTGGTTACTGGTTTGTGATT+GGG 0.331559 4_2:-74152582 None:intergenic
AAGCTTTGTTGAGTAATAGA+TGG 0.333006 4_2:-74157288 None:intergenic
AAGAAACCATACACCAAGAT+AGG 0.333809 4_2:+74156930 Msa0621870:CDS
AGGTTATATGGAAAGAATTA+AGG 0.342347 4_2:+74155334 Msa0621870:CDS
AAATCGTTGTTTCTGAATAT+GGG 0.349623 4_2:+74152450 Msa0621870:exon
GCGCCTTGGAAAAGGTTATA+TGG 0.368501 4_2:+74155322 Msa0621870:CDS
TGTGACTCTGGAAAGTTTGC+TGG 0.387742 4_2:+74156011 Msa0621870:CDS
CGTTTGGCGACTGCAATTGT+TGG 0.419231 4_2:+74154519 Msa0621870:CDS
GTGAGTGGTTTGGTAAAATC+TGG 0.429615 4_2:-74156829 None:intergenic
GGTGAACCTTGCTGCTGCAT+TGG 0.431520 4_2:+74152975 Msa0621870:CDS
AGTGATGGTTCGTTTCAGTA+TGG 0.432436 4_2:+74154435 Msa0621870:CDS
GATGGTGCACACCACCAGTA+TGG 0.438952 4_2:+74157130 Msa0621870:three_prime_UTR
AGTATCCCTATCTTGGTGTA+TGG 0.442733 4_2:-74156936 None:intergenic
TCAGACACCGTTATATCTGT+TGG 0.445284 4_2:+74156788 Msa0621870:CDS
TTTCCTAGAATCAAACCGTT+TGG 0.448265 4_2:+74154503 Msa0621870:CDS
CGTTTCAGTATGGCAACTAC+TGG 0.448611 4_2:+74154445 Msa0621870:CDS
ATTGCAAGATTCTGGAACTA+AGG 0.452028 4_2:+74152820 Msa0621870:CDS
AAAGCAGTCGTCAATCTCTC+TGG 0.452378 4_2:+74155269 Msa0621870:CDS
AAGCTCAAAGAGTGGGAACT+AGG 0.453158 4_2:-74157177 None:intergenic
AAATTGAATGACTGATCAAT+TGG 0.456670 4_2:+74152297 Msa0621870:five_prime_UTR
AGAGAGACATGTTGAAGTTG+AGG 0.459065 4_2:-74152623 None:intergenic
ATTGAAGAGCGCCTTGGAAA+AGG 0.461660 4_2:+74155314 Msa0621870:CDS
CACTCACTACATATCATAGA+AGG 0.462333 4_2:+74156845 Msa0621870:CDS
TTCTAGGAAATGTTGAGTTA+CGG 0.463130 4_2:-74154490 None:intergenic
TTCATTGACGTGAAGAGGCC+AGG 0.465444 4_2:+74155365 Msa0621870:CDS
GTTTGGCGACTGCAATTGTT+GGG 0.465715 4_2:+74154520 Msa0621870:CDS
GAGAGACATGTTGAAGTTGA+GGG 0.475518 4_2:-74152622 None:intergenic
ATGCAGCAGCAAGGTTCACC+AGG 0.479335 4_2:-74152972 None:intergenic
TTACCTAAGTATCCCTATCT+TGG 0.483862 4_2:-74156943 None:intergenic
TTCCGACTACCGTGTGACTC+TGG 0.484923 4_2:+74155999 Msa0621870:CDS
ATGGAAAGAATTAAGGAGGA+TGG 0.490882 4_2:+74155341 Msa0621870:CDS
GATGATGAATTTGATAATAG+TGG 0.496054 4_2:-74152504 None:intergenic
ACTGATCAATTGGTTGGTCT+TGG 0.498258 4_2:+74152307 Msa0621870:five_prime_UTR
ACACCAAGATAGGGATACTT+AGG 0.498887 4_2:+74156940 Msa0621870:CDS
GCAATTGTTGGGCACAGTAA+AGG 0.505246 4_2:+74154531 Msa0621870:CDS
AACGGCAGAACAATATTGTT+CGG 0.509171 4_2:+74157050 Msa0621870:three_prime_UTR
CTAACGAAGCTAGCTCATCT+TGG 0.510470 4_2:-74156892 None:intergenic
CAACTACTGGAGAGAGGCTG+AGG 0.515668 4_2:+74154458 Msa0621870:CDS
GACAGGGTCCTTACAGTTCA+CGG 0.517524 4_2:+74156761 Msa0621870:intron
TGCATTCTTTATCAATCTGA+AGG 0.518096 4_2:-74156065 None:intergenic
TGCATCTCCAACAGATATAA+CGG 0.525489 4_2:-74156795 None:intergenic
CATTATTGATTATGAGCTGA+TGG 0.525637 4_2:+74157112 Msa0621870:three_prime_UTR
CTGAAGAACCGTGAACTGTA+AGG 0.530377 4_2:-74156769 None:intergenic
CAACAATTGCAGTCGCCAAA+CGG 0.531049 4_2:-74154518 None:intergenic
TCATCTTGGTGATTAGTGTA+GGG 0.532866 4_2:-74156878 None:intergenic
AGCTTTGTTGAGTAATAGAT+GGG 0.534458 4_2:-74157287 None:intergenic
CTCATCTTGGTGATTAGTGT+AGG 0.538424 4_2:-74156879 None:intergenic
GGTCTTGGTGAGATATTCGC+TGG 0.543294 4_2:+74152322 Msa0621870:five_prime_UTR
AGAAACCATACACCAAGATA+GGG 0.545738 4_2:+74156931 Msa0621870:CDS
ATGGTTTCATTGACGTGAAG+AGG 0.545822 4_2:+74155360 Msa0621870:CDS
CTCTGGACGCTATGATCTGA+AGG 0.547034 4_2:+74155286 Msa0621870:CDS
CTTCTATGATATGTAGTGAG+TGG 0.547715 4_2:-74156844 None:intergenic
TGTGCTCTCTATAATTTGCA+AGG 0.556453 4_2:+74152406 Msa0621870:five_prime_UTR
TTCATTATTTCAATATCACC+AGG 0.559428 4_2:+74152542 Msa0621870:CDS
ATGATATGTAGTGAGTGGTT+TGG 0.561435 4_2:-74156839 None:intergenic
TTCCAGAGTCACACGGTAGT+CGG 0.565937 4_2:-74156001 None:intergenic
TGGTGATATTGAAATAATGA+AGG 0.566758 4_2:-74152540 None:intergenic
GATGGAATTGAAGAGCGCCT+TGG 0.568111 4_2:+74155308 Msa0621870:CDS
TTCAGATTGATAAAGAATGC+AGG 0.571124 4_2:+74156067 Msa0621870:CDS
TGAATGACTGATCAATTGGT+TGG 0.577242 4_2:+74152301 Msa0621870:five_prime_UTR
GAGATTGTAATCTTGTGCCA+TGG 0.584009 4_2:+74152842 Msa0621870:CDS
TGAGTGGTTTGGTAAAATCT+GGG 0.584588 4_2:-74156828 None:intergenic
TAAACTTGTAACTAATACAG+TGG 0.588472 4_2:+74157367 Msa0621870:three_prime_UTR
GGACGCTATGATCTGAAGGA+TGG 0.595304 4_2:+74155290 Msa0621870:CDS
TAACACGGTACATCATATCA+GGG 0.595994 4_2:-74157083 None:intergenic
GTCATAATACCCAATAAGCA+TGG 0.602475 4_2:+74152779 Msa0621870:CDS
TTATATGGAAAGAATTAAGG+AGG 0.617189 4_2:+74155337 Msa0621870:CDS
AAACTTGTAACTAATACAGT+GGG 0.636851 4_2:+74157368 Msa0621870:three_prime_UTR
GTGCTCTCTATAATTTGCAA+GGG 0.645308 4_2:+74152407 Msa0621870:five_prime_UTR
GTATGGCAACTACTGGAGAG+AGG 0.653608 4_2:+74154452 Msa0621870:CDS
TCTTGATGTAGGTGGTGGTG+TGG 0.654415 4_2:+74155214 Msa0621870:intron
TCAATAATGCCAAAATAACA+CGG 0.678115 4_2:-74157098 None:intergenic
TGCAGCAGCAAGGTTCACCA+GGG 0.686910 4_2:-74152971 None:intergenic
GCAAACTTTCCAGAGTCACA+CGG 0.699981 4_2:-74156008 None:intergenic
GAGAGCTGCTATATATCACG+AGG 0.701468 4_2:-74152351 None:intergenic
AACACGGTACATCATATCAG+GGG 0.705482 4_2:-74157082 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAACAGTTTAAATT+TGG - chr4_2:74153116-74153135 None:intergenic 10.0%
!!! TAATATCTTTTTTATACTAA+AGG - chr4_2:74154276-74154295 None:intergenic 10.0%
!! TGAATAATTAAACTATTATT+AGG + chr4_2:74155181-74155200 Msa0621870:intron 10.0%
!!! TATTAATTTAATCTCAATTT+TGG + chr4_2:74156642-74156661 Msa0621870:intron 10.0%
!!! CAATTTATTTTGTTTGTTTA+AGG - chr4_2:74152283-74152302 None:intergenic 15.0%
!! AGATATTATAACATATAAGT+TGG + chr4_2:74154288-74154307 Msa0621870:intron 15.0%
!! GATATTATAACATATAAGTT+GGG + chr4_2:74154289-74154308 Msa0621870:intron 15.0%
!! TACTAAATATAATGCAATAA+TGG - chr4_2:74154683-74154702 None:intergenic 15.0%
!!! ATGTTCTTTTTATTTGTAAT+TGG + chr4_2:74155081-74155100 Msa0621870:intron 15.0%
!!! TGTTCTTTTTATTTGTAATT+GGG + chr4_2:74155082-74155101 Msa0621870:intron 15.0%
!!! ATGGTCTAAAATTTAAAATT+TGG + chr4_2:74155553-74155572 Msa0621870:intron 15.0%
!!! TGGTCTAAAATTTAAAATTT+GGG + chr4_2:74155554-74155573 Msa0621870:intron 15.0%
!! AATGTAATTTGACAAAATTA+GGG - chr4_2:74155618-74155637 None:intergenic 15.0%
!! TTTAAACTCTACATAAATAA+AGG + chr4_2:74156242-74156261 Msa0621870:intron 15.0%
!! TTTGAACAAATAAAAATCAT+TGG - chr4_2:74156270-74156289 None:intergenic 15.0%
!! TACATTCATAAAATTGAATA+AGG + chr4_2:74156531-74156550 Msa0621870:intron 15.0%
!! AAGTTCATACAATTAATTAA+AGG - chr4_2:74157257-74157276 None:intergenic 15.0%
!!! ATAAAAGAAACAAACTTTTG+AGG - chr4_2:74152876-74152895 None:intergenic 20.0%
!!! AAAACATAATGGATGAAATT+GGG - chr4_2:74152930-74152949 None:intergenic 20.0%
!! ATACCAATGTTATATAACAT+TGG + chr4_2:74153527-74153546 Msa0621870:intron 20.0%
!! ATACCAATGTTATATAACAT+TGG - chr4_2:74153527-74153546 None:intergenic 20.0%
!! ATTATGACATGTTTATTGTT+TGG - chr4_2:74153875-74153894 None:intergenic 20.0%
!!! GATATTTAAAGATTGCATTT+TGG + chr4_2:74154618-74154637 Msa0621870:intron 20.0%
!!! ATTTCAATATTGACTAAGTT+AGG - chr4_2:74154837-74154856 None:intergenic 20.0%
!! TTAGTCAATATTGAAATAGA+AGG + chr4_2:74154840-74154859 Msa0621870:intron 20.0%
!! TTACTATTATTCAAACATAC+AGG + chr4_2:74154951-74154970 Msa0621870:intron 20.0%
!!! GTTCTTTTTATTTGTAATTG+GGG + chr4_2:74155083-74155102 Msa0621870:intron 20.0%
!! GAATGTAATTTGACAAAATT+AGG - chr4_2:74155619-74155638 None:intergenic 20.0%
!! TTACATTCTATTAAATGATC+TGG + chr4_2:74155631-74155650 Msa0621870:intron 20.0%
!! TATACTTTCTCAACAAAAAA+GGG - chr4_2:74156147-74156166 None:intergenic 20.0%
!! TTCATAAAATTGAATAAGGT+TGG + chr4_2:74156535-74156554 Msa0621870:intron 20.0%
!! TCATAAAATTGAATAAGGTT+GGG + chr4_2:74156536-74156555 Msa0621870:intron 20.0%
!! TTAAAATATCAAGAGTGATT+AGG - chr4_2:74156614-74156633 None:intergenic 20.0%
!! AAATCATGTAATATATGACA+GGG + chr4_2:74156745-74156764 Msa0621870:intron 20.0%
! AAATTGAATGACTGATCAAT+TGG + chr4_2:74152297-74152316 Msa0621870:five_prime_UTR 25.0%
!!! TAAATCGTTGTTTCTGAATA+TGG + chr4_2:74152449-74152468 Msa0621870:exon 25.0%
!!! AAATCGTTGTTTCTGAATAT+GGG + chr4_2:74152450-74152469 Msa0621870:exon 25.0%
!! GATGATGAATTTGATAATAG+TGG - chr4_2:74152507-74152526 None:intergenic 25.0%
! TGGTGATATTGAAATAATGA+AGG - chr4_2:74152543-74152562 None:intergenic 25.0%
! TTCATTATTTCAATATCACC+AGG + chr4_2:74152542-74152561 Msa0621870:CDS 25.0%
!! AATTTTTCACCATGCTTATT+GGG - chr4_2:74152791-74152810 None:intergenic 25.0%
!! TAATTTTTCACCATGCTTAT+TGG - chr4_2:74152792-74152811 None:intergenic 25.0%
!!! GAAAACATAATGGATGAAAT+TGG - chr4_2:74152931-74152950 None:intergenic 25.0%
! CTGAAGATAAGAAAACATAA+TGG - chr4_2:74152941-74152960 None:intergenic 25.0%
!! CATTATGTTTTCTTATCTTC+AGG + chr4_2:74152939-74152958 Msa0621870:intron 25.0%
!! TATGTTTAAGATTTGAGACT+TGG + chr4_2:74153398-74153417 Msa0621870:intron 25.0%
!!! TGGTTGTTTTATGTTTGTTT+AGG + chr4_2:74153418-74153437 Msa0621870:intron 25.0%
! TAAAACATAAAATTGCAACC+AGG - chr4_2:74153458-74153477 None:intergenic 25.0%
!!! TGAGTAGAATTCTTTGATTT+TGG + chr4_2:74153705-74153724 Msa0621870:intron 25.0%
!! ATTGCTCTAGATTTGAAAAA+AGG + chr4_2:74154004-74154023 Msa0621870:intron 25.0%
!! TTGCTCTAGATTTGAAAAAA+GGG + chr4_2:74154005-74154024 Msa0621870:intron 25.0%
!! GATTTTGAATGAAATGCTAT+AGG + chr4_2:74154247-74154266 Msa0621870:intron 25.0%
!! ATTATAACATATAAGTTGGG+TGG + chr4_2:74154292-74154311 Msa0621870:intron 25.0%
! AAAAAATTGACACCGTAAAA+TGG - chr4_2:74154326-74154345 None:intergenic 25.0%
! GAGAAAAAACAGCTATATTA+AGG - chr4_2:74154405-74154424 None:intergenic 25.0%
!!! ATAGCTGTTTTTTCTCTTTT+AGG + chr4_2:74154409-74154428 Msa0621870:intron 25.0%
!!! TAGCTGTTTTTTCTCTTTTA+GGG + chr4_2:74154410-74154429 Msa0621870:intron 25.0%
!! AAAGATTGCATTTTGGATTT+AGG + chr4_2:74154625-74154644 Msa0621870:intron 25.0%
!!! AACAGGAAATTATTTTGACA+AGG - chr4_2:74154719-74154738 None:intergenic 25.0%
! TTGTCAAAATAATTTCCTGT+TGG + chr4_2:74154718-74154737 Msa0621870:intron 25.0%
!! AAAATAATTTCCTGTTGGTT+GGG + chr4_2:74154723-74154742 Msa0621870:intron 25.0%
! TGTTTCATCTAATATGTACT+TGG + chr4_2:74154791-74154810 Msa0621870:intron 25.0%
!! TCTAATATGTACTTGGTAAT+TGG + chr4_2:74154798-74154817 Msa0621870:intron 25.0%
! TTGAAATAGAAGGAAAATCT+AGG + chr4_2:74154850-74154869 Msa0621870:intron 25.0%
! TATAACTCTGTATTTCATGT+CGG + chr4_2:74154999-74155018 Msa0621870:intron 25.0%
! AGGTTATATGGAAAGAATTA+AGG + chr4_2:74155334-74155353 Msa0621870:CDS 25.0%
! TTATATGGAAAGAATTAAGG+AGG + chr4_2:74155337-74155356 Msa0621870:CDS 25.0%
! CTTTAACAATAAGTTAGAAG+AGG - chr4_2:74155495-74155514 None:intergenic 25.0%
! TATATGATTATTACTCTTGC+AGG + chr4_2:74155712-74155731 Msa0621870:intron 25.0%
! CTTCATGCATATTTGTATTT+AGG - chr4_2:74156041-74156060 None:intergenic 25.0%
! GTATACTTTCTCAACAAAAA+AGG - chr4_2:74156148-74156167 None:intergenic 25.0%
! GTTCTATGAAAAGTAAAAGA+AGG + chr4_2:74156328-74156347 Msa0621870:intron 25.0%
! ATTGAAAAGCTTCAGAAATT+TGG + chr4_2:74156499-74156518 Msa0621870:intron 25.0%
! TTGAAAAGCTTCAGAAATTT+GGG + chr4_2:74156500-74156519 Msa0621870:intron 25.0%
!! TTAGGCATTTTATACATGAA+GGG - chr4_2:74156596-74156615 None:intergenic 25.0%
!! ATTAGGCATTTTATACATGA+AGG - chr4_2:74156597-74156616 None:intergenic 25.0%
! CAAATCATGTAATATATGAC+AGG + chr4_2:74156744-74156763 Msa0621870:intron 25.0%
!!! TTAGTGAATCTTGCTTTTAT+AGG + chr4_2:74157018-74157037 Msa0621870:intron 25.0%
!! TTTTATAGGCAAGAAATCAA+CGG + chr4_2:74157032-74157051 Msa0621870:intron 25.0%
! TCAATAATGCCAAAATAACA+CGG - chr4_2:74157101-74157120 None:intergenic 25.0%
! CTGTATTAGTTACAAGTTTA+AGG - chr4_2:74157367-74157386 None:intergenic 25.0%
! TAAACTTGTAACTAATACAG+TGG + chr4_2:74157367-74157386 Msa0621870:three_prime_UTR 25.0%
! AAACTTGTAACTAATACAGT+GGG + chr4_2:74157368-74157387 Msa0621870:three_prime_UTR 25.0%
GAACATTAGAAAAATGAACC+TGG - chr4_2:74152563-74152582 None:intergenic 30.0%
ACAAATTATACATCATCACC+TGG - chr4_2:74152660-74152679 None:intergenic 30.0%
! CTGTTAATAACTACCTTTTC+AGG + chr4_2:74152740-74152759 Msa0621870:intron 30.0%
! CTTTTGTTCAAAACCTGAAA+AGG - chr4_2:74152756-74152775 None:intergenic 30.0%
TAAGCATGGTGAAAAATTAG+TGG + chr4_2:74152793-74152812 Msa0621870:CDS 30.0%
AAGCATGGTGAAAAATTAGT+GGG + chr4_2:74152794-74152813 Msa0621870:CDS 30.0%
GAAATTGGGTACAAATACAA+AGG - chr4_2:74152916-74152935 None:intergenic 30.0%
!! ATTTTACTCACGATTTGGAT+CGG - chr4_2:74153230-74153249 None:intergenic 30.0%
ATATAACATTGGTATCCCAA+TGG - chr4_2:74153644-74153663 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG - chr4_2:74153633-74153652 None:intergenic 30.0%
TATATAACATTGGCCAATGA+AGG + chr4_2:74153537-74153556 Msa0621870:intron 30.0%
ATATGAAGGTCTAAAGAAGA+AGG - chr4_2:74153598-74153617 None:intergenic 30.0%
TATATAACATTGGCCAATGA+AGG - chr4_2:74153537-74153556 None:intergenic 30.0%
TGGCCAATGTTATATAACAT+TGG + chr4_2:74153633-74153652 Msa0621870:intron 30.0%
TTCTACTCAATTAAGTCTGT+AGG - chr4_2:74153694-74153713 None:intergenic 30.0%
AAGCACTTGTGAAATTGTTT+GGG - chr4_2:74153822-74153841 None:intergenic 30.0%
TAAGCACTTGTGAAATTGTT+TGG - chr4_2:74153823-74153842 None:intergenic 30.0%
! ACTTATTTGAGTTCGTATAC+TGG - chr4_2:74153848-74153867 None:intergenic 30.0%
TAAAATCGCCATTAAGTTTG+TGG + chr4_2:74153910-74153929 Msa0621870:intron 30.0%
! TGCTCTAGATTTGAAAAAAG+GGG + chr4_2:74154006-74154025 Msa0621870:intron 30.0%
! TTGATTATTTTCACAAGGGT+AGG + chr4_2:74154029-74154048 Msa0621870:intron 30.0%
! CAATACATCACCAAATTTTG+TGG - chr4_2:74154062-74154081 None:intergenic 30.0%
! ACTCTCGTGTTTAGTTTAAT+AGG + chr4_2:74154119-74154138 Msa0621870:intron 30.0%
AGGTACATTGGTGAAAATAT+TGG - chr4_2:74154210-74154229 None:intergenic 30.0%
GTTAATACATGTAGGTACAT+TGG - chr4_2:74154222-74154241 None:intergenic 30.0%
ATCAAGTGGTTAATACATGT+AGG - chr4_2:74154230-74154249 None:intergenic 30.0%
GCATTTCATTCAAAATCAAG+TGG - chr4_2:74154244-74154263 None:intergenic 30.0%
TGTACTAGATTTCTGTTATC+TGG + chr4_2:74154346-74154365 Msa0621870:intron 30.0%
! TTCTAGGAAATGTTGAGTTA+CGG - chr4_2:74154493-74154512 None:intergenic 30.0%
CAAAATAATTTCCTGTTGGT+TGG + chr4_2:74154722-74154741 Msa0621870:intron 30.0%
TTAAATGATGCAGTACTAAG+AGG + chr4_2:74154764-74154783 Msa0621870:intron 30.0%
TAAATGATGCAGTACTAAGA+GGG + chr4_2:74154765-74154784 Msa0621870:intron 30.0%
! TTTCCATATAACCTTTTCCA+AGG - chr4_2:74155328-74155347 None:intergenic 30.0%
CTTATGTGTGACTAAAAGAT+AGG - chr4_2:74155394-74155413 None:intergenic 30.0%
AACAATAAGTTAGAAGAGGA+GGG - chr4_2:74155491-74155510 None:intergenic 30.0%
TAACAATAAGTTAGAAGAGG+AGG - chr4_2:74155492-74155511 None:intergenic 30.0%
GAACTATAGCTTATAGGATA+GGG - chr4_2:74155584-74155603 None:intergenic 30.0%
AGAACTATAGCTTATAGGAT+AGG - chr4_2:74155585-74155604 None:intergenic 30.0%
CAGTAAGAACTATAGCTTAT+AGG - chr4_2:74155590-74155609 None:intergenic 30.0%
!!! TAAACACTCCTACTCTTTTT+TGG + chr4_2:74155825-74155844 Msa0621870:intron 30.0%
!! CTTTAGAACCAAAAAAGAGT+AGG - chr4_2:74155836-74155855 None:intergenic 30.0%
AGTATAGTTCAGATGGTAAA+AGG - chr4_2:74155952-74155971 None:intergenic 30.0%
TGCATTCTTTATCAATCTGA+AGG - chr4_2:74156068-74156087 None:intergenic 30.0%
TTCAGATTGATAAAGAATGC+AGG + chr4_2:74156067-74156086 Msa0621870:CDS 30.0%
TATACCTGCAGAATTTATGA+AGG + chr4_2:74156163-74156182 Msa0621870:intron 30.0%
TTTAAGAGTTCCATGATTGT+TGG + chr4_2:74156306-74156325 Msa0621870:intron 30.0%
TTTCATAGAACCAACAATCA+TGG - chr4_2:74156319-74156338 None:intergenic 30.0%
CTAATGTTCGACTTCTATTA+AGG + chr4_2:74156370-74156389 Msa0621870:intron 30.0%
!!! ATTAAGGAGGTTTTAGATGT+TGG + chr4_2:74156386-74156405 Msa0621870:intron 30.0%
!!! TTAAGGAGGTTTTAGATGTT+GGG + chr4_2:74156387-74156406 Msa0621870:intron 30.0%
! CTTTTCAATAACCAGACAAA+TGG - chr4_2:74156488-74156507 None:intergenic 30.0%
TGAAAAGCTTCAGAAATTTG+GGG + chr4_2:74156501-74156520 Msa0621870:intron 30.0%
AAATTGAATAAGGTTGGGTT+TGG + chr4_2:74156541-74156560 Msa0621870:intron 30.0%
! TAGGCATTTTATACATGAAG+GGG - chr4_2:74156595-74156614 None:intergenic 30.0%
!!! TATGATGTACCGTGTTATTT+TGG + chr4_2:74157089-74157108 Msa0621870:three_prime_UTR 30.0%
! CATTATTGATTATGAGCTGA+TGG + chr4_2:74157112-74157131 Msa0621870:three_prime_UTR 30.0%
!! TTTTAGAAAGCTCAAAGAGT+GGG - chr4_2:74157187-74157206 None:intergenic 30.0%
!! TTTTTAGAAAGCTCAAAGAG+TGG - chr4_2:74157188-74157207 None:intergenic 30.0%
!! AGCTTTGTTGAGTAATAGAT+GGG - chr4_2:74157290-74157309 None:intergenic 30.0%
!! AAGCTTTGTTGAGTAATAGA+TGG - chr4_2:74157291-74157310 None:intergenic 30.0%
TGAATGACTGATCAATTGGT+TGG + chr4_2:74152301-74152320 Msa0621870:five_prime_UTR 35.0%
! TGTGCTCTCTATAATTTGCA+AGG + chr4_2:74152406-74152425 Msa0621870:five_prime_UTR 35.0%
! GTGCTCTCTATAATTTGCAA+GGG + chr4_2:74152407-74152426 Msa0621870:five_prime_UTR 35.0%
TGCAAGGGTAAGTGAATAAT+TGG + chr4_2:74152422-74152441 Msa0621870:five_prime_UTR 35.0%
GTCATAATACCCAATAAGCA+TGG + chr4_2:74152779-74152798 Msa0621870:CDS 35.0%
!! ATTGCAAGATTCTGGAACTA+AGG + chr4_2:74152820-74152839 Msa0621870:CDS 35.0%
!! TCTTTTCGCTTTGACTTTTC+TGG + chr4_2:74153015-74153034 Msa0621870:CDS 35.0%
!! GCTTTGACTTTTCTGGAAAT+GGG + chr4_2:74153022-74153041 Msa0621870:CDS 35.0%
! AGTGTTTTCGTAAGCTATCA+TGG + chr4_2:74153149-74153168 Msa0621870:intron 35.0%
TATGTTGAAGCTTTCTGACT+AGG + chr4_2:74153324-74153343 Msa0621870:intron 35.0%
AAAATTGCAACCAGGATTGA+AGG - chr4_2:74153450-74153469 None:intergenic 35.0%
CTTCTTTAGACCTTCATATG+TGG + chr4_2:74153599-74153618 Msa0621870:intron 35.0%
TTAAGTCTGTAGGATCGAAA+GGG - chr4_2:74153684-74153703 None:intergenic 35.0%
ATTAAGTCTGTAGGATCGAA+AGG - chr4_2:74153685-74153704 None:intergenic 35.0%
ATCTTGCATCAGATCAAAAC+TGG - chr4_2:74153761-74153780 None:intergenic 35.0%
GGAAATAGCTTAAGGTTGTT+TGG - chr4_2:74153790-74153809 None:intergenic 35.0%
GAGCTTATGGAAATAGCTTA+AGG - chr4_2:74153798-74153817 None:intergenic 35.0%
AAATTGTTTGGGAGAGCTTA+TGG - chr4_2:74153811-74153830 None:intergenic 35.0%
CCATTAAGTTTGTGGATACA+GGG + chr4_2:74153918-74153937 Msa0621870:intron 35.0%
!! AGGGGTTGATTATTTTCACA+AGG + chr4_2:74154024-74154043 Msa0621870:intron 35.0%
!! GGGGTTGATTATTTTCACAA+GGG + chr4_2:74154025-74154044 Msa0621870:intron 35.0%
TAATAGGAAACAACCGAATG+AGG + chr4_2:74154135-74154154 Msa0621870:intron 35.0%
! GTGGTAGTTTCTCCATTTTA+CGG + chr4_2:74154311-74154330 Msa0621870:intron 35.0%
!! TTCTCTTTTAGGGAAAGTGA+TGG + chr4_2:74154420-74154439 Msa0621870:intron 35.0%
TTTCCTAGAATCAAACCGTT+TGG + chr4_2:74154503-74154522 Msa0621870:CDS 35.0%
! CTGTCTAAAACTTGTCTTGT+TGG - chr4_2:74154599-74154618 None:intergenic 35.0%
!! GGTTATATTTTTGAGCTGCT+TGG + chr4_2:74154871-74154890 Msa0621870:intron 35.0%
TCTGTATTTCATGTCGGAAT+AGG + chr4_2:74155005-74155024 Msa0621870:intron 35.0%
GTGTATCTGTATCTTGATGT+AGG + chr4_2:74155203-74155222 Msa0621870:intron 35.0%
TATCTGTATCTTGATGTAGG+TGG + chr4_2:74155206-74155225 Msa0621870:intron 35.0%
ATGGAAAGAATTAAGGAGGA+TGG + chr4_2:74155341-74155360 Msa0621870:CDS 35.0%
TGACTAAAAGATAGGTTACC+TGG - chr4_2:74155386-74155405 None:intergenic 35.0%
TGTGAAAGAAAAACAAGCCA+TGG - chr4_2:74155534-74155553 None:intergenic 35.0%
!!! TGGCTTGTTTTTCTTTCACA+TGG + chr4_2:74155534-74155553 Msa0621870:intron 35.0%
!! AGTAGGAGTGTTTATGTTGA+CGG - chr4_2:74155819-74155838 None:intergenic 35.0%
!! TTTGGTTCTAAAGAGTCTAG+AGG + chr4_2:74155843-74155862 Msa0621870:intron 35.0%
TCTCGTAAGTATAGTTCAGA+TGG - chr4_2:74155959-74155978 None:intergenic 35.0%
AAGACCTTCATAAATTCTGC+AGG - chr4_2:74156170-74156189 None:intergenic 35.0%
ATGTTCGACTTCTATTAAGG+AGG + chr4_2:74156373-74156392 Msa0621870:intron 35.0%
! TGATTTTCCTTCCATTTGTC+TGG + chr4_2:74156474-74156493 Msa0621870:intron 35.0%
TCAATAACCAGACAAATGGA+AGG - chr4_2:74156484-74156503 None:intergenic 35.0%
TGATATCATCCACTTGACTA+GGG - chr4_2:74156674-74156693 None:intergenic 35.0%
TGCATCTCCAACAGATATAA+CGG - chr4_2:74156798-74156817 None:intergenic 35.0%
!! TGAGTGGTTTGGTAAAATCT+GGG - chr4_2:74156831-74156850 None:intergenic 35.0%
ATGATATGTAGTGAGTGGTT+TGG - chr4_2:74156842-74156861 None:intergenic 35.0%
CTTCTATGATATGTAGTGAG+TGG - chr4_2:74156847-74156866 None:intergenic 35.0%
CACTCACTACATATCATAGA+AGG + chr4_2:74156845-74156864 Msa0621870:CDS 35.0%
! TCATCTTGGTGATTAGTGTA+GGG - chr4_2:74156881-74156900 None:intergenic 35.0%
AAGAAACCATACACCAAGAT+AGG + chr4_2:74156930-74156949 Msa0621870:CDS 35.0%
AGAAACCATACACCAAGATA+GGG + chr4_2:74156931-74156950 Msa0621870:CDS 35.0%
TTACCTAAGTATCCCTATCT+TGG - chr4_2:74156946-74156965 None:intergenic 35.0%
AACGGCAGAACAATATTGTT+CGG + chr4_2:74157050-74157069 Msa0621870:three_prime_UTR 35.0%
TAACACGGTACATCATATCA+GGG - chr4_2:74157086-74157105 None:intergenic 35.0%
ATAACACGGTACATCATATC+AGG - chr4_2:74157087-74157106 None:intergenic 35.0%
! TGTCTTCTTTTTCTCCATAC+TGG - chr4_2:74157147-74157166 None:intergenic 35.0%
ATGGAGAAAAAGAAGACATG+CGG + chr4_2:74157149-74157168 Msa0621870:three_prime_UTR 35.0%
!! ACTGATCAATTGGTTGGTCT+TGG + chr4_2:74152307-74152326 Msa0621870:five_prime_UTR 40.0%
!! CTGGTTACTGGTTTGTGATT+GGG - chr4_2:74152585-74152604 None:intergenic 40.0%
!! TCTGGTTACTGGTTTGTGAT+TGG - chr4_2:74152586-74152605 None:intergenic 40.0%
! CTGATTCTTCTTCTGGTTAC+TGG - chr4_2:74152597-74152616 None:intergenic 40.0%
GAGAGACATGTTGAAGTTGA+GGG - chr4_2:74152625-74152644 None:intergenic 40.0%
AGAGAGACATGTTGAAGTTG+AGG - chr4_2:74152626-74152645 None:intergenic 40.0%
TCTCTCTCTTCAGAAAAACC+AGG + chr4_2:74152639-74152658 Msa0621870:CDS 40.0%
GTGGGTATATTGCAAGATTC+TGG + chr4_2:74152812-74152831 Msa0621870:CDS 40.0%
GAGATTGTAATCTTGTGCCA+TGG + chr4_2:74152842-74152861 Msa0621870:CDS 40.0%
TCTTCAGGAATCAAAAACCC+TGG + chr4_2:74152954-74152973 Msa0621870:intron 40.0%
!! CGCTTTGACTTTTCTGGAAA+TGG + chr4_2:74153021-74153040 Msa0621870:CDS 40.0%
! CAGGGATTTTACTCACGATT+TGG - chr4_2:74153235-74153254 None:intergenic 40.0%
! CATTTTCATGCGATTTCGCA+GGG - chr4_2:74153253-74153272 None:intergenic 40.0%
! ACATTTTCATGCGATTTCGC+AGG - chr4_2:74153254-74153273 None:intergenic 40.0%
ACATAAACCACTCAAAGCCA+GGG - chr4_2:74153309-74153328 None:intergenic 40.0%
AACATAAACCACTCAAAGCC+AGG - chr4_2:74153310-74153329 None:intergenic 40.0%
! TATGCATGTGAAGTGCTATG+CGG - chr4_2:74153567-74153586 None:intergenic 40.0%
GTATCCCAATGATACACAAG+TGG + chr4_2:74153655-74153674 Msa0621870:intron 40.0%
GACACCACTTGTGTATCATT+GGG - chr4_2:74153662-74153681 None:intergenic 40.0%
GCCATTAAGTTTGTGGATAC+AGG + chr4_2:74153917-74153936 Msa0621870:intron 40.0%
CCCTGTATCCACAAACTTAA+TGG - chr4_2:74153921-74153940 None:intergenic 40.0%
TCTCATTCATGCTCTCCATT+GGG + chr4_2:74153952-74153971 Msa0621870:intron 40.0%
GTTGCAATTCATGAACCCAA+TGG - chr4_2:74153970-74153989 None:intergenic 40.0%
TTGGAGCTAGCTATAGATGT+GGG - chr4_2:74154191-74154210 None:intergenic 40.0%
ATTGGAGCTAGCTATAGATG+TGG - chr4_2:74154192-74154211 None:intergenic 40.0%
AGTGATGGTTCGTTTCAGTA+TGG + chr4_2:74154435-74154454 Msa0621870:CDS 40.0%
TGGGCACAGTAAAGGTAAAT+TGG + chr4_2:74154539-74154558 Msa0621870:intron 40.0%
! CTAAAACTTGTCTTGTTGGC+AGG - chr4_2:74154595-74154614 None:intergenic 40.0%
TTGGCAAAAACCTGCTACAA+AGG + chr4_2:74154890-74154909 Msa0621870:intron 40.0%
AAACCTGCTACAAAGGAACT+CGG + chr4_2:74154897-74154916 Msa0621870:intron 40.0%
! CCACATAATGCAAGAGCATA+GGG - chr4_2:74155047-74155066 None:intergenic 40.0%
! TCCACATAATGCAAGAGCAT+AGG - chr4_2:74155048-74155067 None:intergenic 40.0%
TCTTGCATTATGTGGATGAC+TGG + chr4_2:74155052-74155071 Msa0621870:intron 40.0%
ATGGTTTCATTGACGTGAAG+AGG + chr4_2:74155360-74155379 Msa0621870:CDS 40.0%
AGTTTCAATTCGTCTTTGCG+TGG + chr4_2:74155412-74155431 Msa0621870:intron 40.0%
GTTTCAATTCGTCTTTGCGT+GGG + chr4_2:74155413-74155432 Msa0621870:intron 40.0%
TTTCAATTCGTCTTTGCGTG+GGG + chr4_2:74155414-74155433 Msa0621870:intron 40.0%
AAATGATCTGGCACTTGACA+TGG + chr4_2:74155643-74155662 Msa0621870:intron 40.0%
ATGTCATGTCATGACTCATG+TGG - chr4_2:74155783-74155802 None:intergenic 40.0%
!! ACACACTAAGTGTTGAGAAG+TGG + chr4_2:74155876-74155895 Msa0621870:intron 40.0%
!! CACACTAAGTGTTGAGAAGT+GGG + chr4_2:74155877-74155896 Msa0621870:intron 40.0%
!! ACACTAAGTGTTGAGAAGTG+GGG + chr4_2:74155878-74155897 Msa0621870:intron 40.0%
!!! AGGTTTTAGATGTTGGGAGA+AGG + chr4_2:74156393-74156412 Msa0621870:intron 40.0%
AAGGAATGAGGAGAAACGAA+AGG + chr4_2:74156412-74156431 Msa0621870:intron 40.0%
AGGAATGAGGAGAAACGAAA+GGG + chr4_2:74156413-74156432 Msa0621870:intron 40.0%
GAGAGAAGGGAAGAAAATGA+GGG + chr4_2:74156442-74156461 Msa0621870:intron 40.0%
AGAGAAGGGAAGAAAATGAG+GGG + chr4_2:74156443-74156462 Msa0621870:intron 40.0%
GTGATATCATCCACTTGACT+AGG - chr4_2:74156675-74156694 None:intergenic 40.0%
TCAGACACCGTTATATCTGT+TGG + chr4_2:74156788-74156807 Msa0621870:CDS 40.0%
!! GTGAGTGGTTTGGTAAAATC+TGG - chr4_2:74156832-74156851 None:intergenic 40.0%
! CTCATCTTGGTGATTAGTGT+AGG - chr4_2:74156882-74156901 None:intergenic 40.0%
! AGTATCCCTATCTTGGTGTA+TGG - chr4_2:74156939-74156958 None:intergenic 40.0%
ACACCAAGATAGGGATACTT+AGG + chr4_2:74156940-74156959 Msa0621870:CDS 40.0%
AACACGGTACATCATATCAG+GGG - chr4_2:74157085-74157104 None:intergenic 40.0%
! CTTCTTTTTCTCCATACTGG+TGG - chr4_2:74157144-74157163 None:intergenic 40.0%
TGGAGAAAAAGAAGACATGC+GGG + chr4_2:74157150-74157169 Msa0621870:three_prime_UTR 40.0%
GAGAGCTGCTATATATCACG+AGG - chr4_2:74152354-74152373 None:intergenic 45.0%
GGTGCTTCTGATTCTTCTTC+TGG - chr4_2:74152604-74152623 None:intergenic 45.0%
!! CTTTTGAGGAGCGAAAACCA+TGG - chr4_2:74152862-74152881 None:intergenic 45.0%
! CTTTTTCCAATGCAGCAGCA+AGG - chr4_2:74152984-74153003 None:intergenic 45.0%
! ACTCACGATTTGGATCGGTA+GGG - chr4_2:74153225-74153244 None:intergenic 45.0%
! TACTCACGATTTGGATCGGT+AGG - chr4_2:74153226-74153245 None:intergenic 45.0%
TAGGTACGATCCTTCAATCC+TGG + chr4_2:74153437-74153456 Msa0621870:intron 45.0%
AATGGTACACAAGTGGTGTC+CGG - chr4_2:74153504-74153523 None:intergenic 45.0%
GACACCACTTGTGTACCATT+GGG + chr4_2:74153504-74153523 Msa0621870:intron 45.0%
GTATCCCAATGGTACACAAG+TGG - chr4_2:74153511-74153530 None:intergenic 45.0%
! TGAAGGTGTGCCACATATGA+AGG - chr4_2:74153612-74153631 None:intergenic 45.0%
CATATGTGGCACACCTTCAT+TGG + chr4_2:74153613-74153632 Msa0621870:intron 45.0%
GGACACCACTTGTGTATCAT+TGG - chr4_2:74153663-74153682 None:intergenic 45.0%
GTCTCATTCATGCTCTCCAT+TGG + chr4_2:74153951-74153970 Msa0621870:intron 45.0%
AGGAGCGATGCCACAAAATT+TGG + chr4_2:74154049-74154068 Msa0621870:intron 45.0%
AGAGCATGAGCTACCTCATT+CGG - chr4_2:74154151-74154170 None:intergenic 45.0%
TCATGCTCTTGCAAGTTGCA+AGG + chr4_2:74154162-74154181 Msa0621870:intron 45.0%
CATGCTCTTGCAAGTTGCAA+GGG + chr4_2:74154163-74154182 Msa0621870:intron 45.0%
CGTTTCAGTATGGCAACTAC+TGG + chr4_2:74154445-74154464 Msa0621870:CDS 45.0%
TCGCCAAACGGTTTGATTCT+AGG - chr4_2:74154509-74154528 None:intergenic 45.0%
CAACAATTGCAGTCGCCAAA+CGG - chr4_2:74154521-74154540 None:intergenic 45.0%
GTTTGGCGACTGCAATTGTT+GGG + chr4_2:74154520-74154539 Msa0621870:CDS 45.0%
GCAATTGTTGGGCACAGTAA+AGG + chr4_2:74154531-74154550 Msa0621870:CDS 45.0%
ATCTTTACAGCCCAACCAAC+AGG - chr4_2:74154736-74154755 None:intergenic 45.0%
CCCTATGCTCTTGCATTATG+TGG + chr4_2:74155044-74155063 Msa0621870:intron 45.0%
GCATTATGTGGATGACTGGA+TGG + chr4_2:74155056-74155075 Msa0621870:intron 45.0%
CTGTATCTTGATGTAGGTGG+TGG + chr4_2:74155209-74155228 Msa0621870:intron 45.0%
AAAGCAGTCGTCAATCTCTC+TGG + chr4_2:74155269-74155288 Msa0621870:CDS 45.0%
!! ATTGAAGAGCGCCTTGGAAA+AGG + chr4_2:74155314-74155333 Msa0621870:CDS 45.0%
GCGCCTTGGAAAAGGTTATA+TGG + chr4_2:74155322-74155341 Msa0621870:CDS 45.0%
TTCAATTCGTCTTTGCGTGG+GGG + chr4_2:74155415-74155434 Msa0621870:intron 45.0%
ATGTGGCAGATCATCTATGG+TGG - chr4_2:74155766-74155785 None:intergenic 45.0%
CTCATGTGGCAGATCATCTA+TGG - chr4_2:74155769-74155788 None:intergenic 45.0%
!! CACTAAGTGTTGAGAAGTGG+GGG + chr4_2:74155879-74155898 Msa0621870:intron 45.0%
CATTTGATATGCTGTGGTGC+GGG - chr4_2:74155920-74155939 None:intergenic 45.0%
GCATTTGATATGCTGTGGTG+CGG - chr4_2:74155921-74155940 None:intergenic 45.0%
!! CAGGAGCATTTGATATGCTG+TGG - chr4_2:74155926-74155945 None:intergenic 45.0%
TTCAGATGGTAAAAGGCTGC+AGG - chr4_2:74155945-74155964 None:intergenic 45.0%
GCAAACTTTCCAGAGTCACA+CGG - chr4_2:74156011-74156030 None:intergenic 45.0%
! TGTGACTCTGGAAAGTTTGC+TGG + chr4_2:74156011-74156030 Msa0621870:CDS 45.0%
AGATGTTGGGAGAAGGAATG+AGG + chr4_2:74156400-74156419 Msa0621870:intron 45.0%
GGAATGAGGAGAAACGAAAG+GGG + chr4_2:74156414-74156433 Msa0621870:intron 45.0%
AGGAGAAACGAAAGGGGAAT+GGG + chr4_2:74156420-74156439 Msa0621870:intron 45.0%
GGAGAGAAGGGAAGAAAATG+AGG + chr4_2:74156441-74156460 Msa0621870:intron 45.0%
TGGTTTACTCCCTAGTCAAG+TGG + chr4_2:74156662-74156681 Msa0621870:intron 45.0%
CTAACGAAGCTAGCTCATCT+TGG - chr4_2:74156895-74156914 None:intergenic 45.0%
AAGCTCAAAGAGTGGGAACT+AGG - chr4_2:74157180-74157199 None:intergenic 45.0%
GGTCTTGGTGAGATATTCGC+TGG + chr4_2:74152322-74152341 Msa0621870:five_prime_UTR 50.0%
GCTGCTGCATTGGAAAAAGC+TGG + chr4_2:74152985-74153004 Msa0621870:CDS 50.0%
! CTCACGATTTGGATCGGTAG+GGG - chr4_2:74153224-74153243 None:intergenic 50.0%
TCGTGCGATTCTAACAACCC+TGG + chr4_2:74153289-74153308 Msa0621870:intron 50.0%
!! CTAACAACCCTGGCTTTGAG+TGG + chr4_2:74153299-74153318 Msa0621870:intron 50.0%
! CTTGCTATCCCCTTTCGATC+CGG + chr4_2:74153482-74153501 Msa0621870:intron 50.0%
AAGTGGTGTCCGGATCGAAA+GGG - chr4_2:74153494-74153513 None:intergenic 50.0%
GGACACCACTTGTGTACCAT+TGG + chr4_2:74153503-74153522 Msa0621870:intron 50.0%
GTATGGCAACTACTGGAGAG+AGG + chr4_2:74154452-74154471 Msa0621870:CDS 50.0%
CGTTTGGCGACTGCAATTGT+TGG + chr4_2:74154519-74154538 Msa0621870:CDS 50.0%
TGACCGAGTTCCTTTGTAGC+AGG - chr4_2:74154903-74154922 None:intergenic 50.0%
! TCTTGATGTAGGTGGTGGTG+TGG + chr4_2:74155214-74155233 Msa0621870:intron 50.0%
CTCTGGACGCTATGATCTGA+AGG + chr4_2:74155286-74155305 Msa0621870:CDS 50.0%
GGACGCTATGATCTGAAGGA+TGG + chr4_2:74155290-74155309 Msa0621870:CDS 50.0%
!! GATGGAATTGAAGAGCGCCT+TGG + chr4_2:74155308-74155327 Msa0621870:CDS 50.0%
TTCATTGACGTGAAGAGGCC+AGG + chr4_2:74155365-74155384 Msa0621870:CDS 50.0%
! GCGTGGGGGCATGTTATATT+AGG + chr4_2:74155429-74155448 Msa0621870:intron 50.0%
! GTGTATTTGCTGCGAGACCA+TGG + chr4_2:74155514-74155533 Msa0621870:intron 50.0%
! TTCTGAGTACCGTGTGACTC+TGG + chr4_2:74155738-74155757 Msa0621870:intron 50.0%
ATGGTGGTTCCAGAGTCACA+CGG - chr4_2:74155750-74155769 None:intergenic 50.0%
GTTGAGAAGTGGGGGAATTG+CGG + chr4_2:74155887-74155906 Msa0621870:intron 50.0%
TTGAGAAGTGGGGGAATTGC+GGG + chr4_2:74155888-74155907 Msa0621870:intron 50.0%
ACGAGACTAAGCACACTTGC+AGG + chr4_2:74155973-74155992 Msa0621870:intron 50.0%
TTCCAGAGTCACACGGTAGT+CGG - chr4_2:74156004-74156023 None:intergenic 50.0%
GAGGAGAAACGAAAGGGGAA+TGG + chr4_2:74156419-74156438 Msa0621870:intron 50.0%
GAAAGGGGAATGGGAGAGAA+GGG + chr4_2:74156429-74156448 Msa0621870:intron 50.0%
TGCAGCAGCAAGGTTCACCA+GGG - chr4_2:74152974-74152993 None:intergenic 55.0%
ATGCAGCAGCAAGGTTCACC+AGG - chr4_2:74152975-74152994 None:intergenic 55.0%
GGTGAACCTTGCTGCTGCAT+TGG + chr4_2:74152975-74152994 Msa0621870:CDS 55.0%
AGTGGTGTCCGGATCGAAAG+GGG - chr4_2:74153493-74153512 None:intergenic 55.0%
CAAGTGGTGTCCGGATCGAA+AGG - chr4_2:74153495-74153514 None:intergenic 55.0%
GCTATGCGGCACACCTTCAT+TGG - chr4_2:74153553-74153572 None:intergenic 55.0%
CAACTACTGGAGAGAGGCTG+AGG + chr4_2:74154458-74154477 Msa0621870:CDS 55.0%
TGATATGCTGTGGTGCGGGT+TGG - chr4_2:74155916-74155935 None:intergenic 55.0%
TTCCGACTACCGTGTGACTC+TGG + chr4_2:74155999-74156018 Msa0621870:CDS 55.0%
CGAAAGGGGAATGGGAGAGA+AGG + chr4_2:74156428-74156447 Msa0621870:intron 55.0%
GATGGTGCACACCACCAGTA+TGG + chr4_2:74157130-74157149 Msa0621870:three_prime_UTR 55.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 74152270 74157400 74152270 ID=Msa0621870;Name=Msa0621870
chr4_2 mRNA 74152270 74157400 74152270 ID=Msa0621870-mRNA-1;Parent=Msa0621870;Name=Msa0621870-mRNA-1;_AED=0.17;_eAED=0.17;_QI=198|1|1|1|0.75|0.77|9|339|322
chr4_2 exon 74152270 74152660 74152270 ID=Msa0621870-mRNA-1:exon:22304;Parent=Msa0621870-mRNA-1
chr4_2 exon 74152762 74152880 74152762 ID=Msa0621870-mRNA-1:exon:22305;Parent=Msa0621870-mRNA-1
chr4_2 exon 74152961 74153043 74152961 ID=Msa0621870-mRNA-1:exon:22306;Parent=Msa0621870-mRNA-1
chr4_2 exon 74154431 74154552 74154431 ID=Msa0621870-mRNA-1:exon:22307;Parent=Msa0621870-mRNA-1
chr4_2 exon 74155225 74155386 74155225 ID=Msa0621870-mRNA-1:exon:22308;Parent=Msa0621870-mRNA-1
chr4_2 exon 74155995 74156088 74155995 ID=Msa0621870-mRNA-1:exon:22309;Parent=Msa0621870-mRNA-1
chr4_2 exon 74156766 74156961 74156766 ID=Msa0621870-mRNA-1:exon:22310;Parent=Msa0621870-mRNA-1
chr4_2 exon 74157040 74157206 74157040 ID=Msa0621870-mRNA-1:exon:22311;Parent=Msa0621870-mRNA-1
chr4_2 exon 74157229 74157400 74157229 ID=Msa0621870-mRNA-1:exon:22312;Parent=Msa0621870-mRNA-1
chr4_2 five_prime_UTR 74152270 74152467 74152270 ID=Msa0621870-mRNA-1:five_prime_utr;Parent=Msa0621870-mRNA-1
chr4_2 CDS 74152468 74152660 74152468 ID=Msa0621870-mRNA-1:cds;Parent=Msa0621870-mRNA-1
chr4_2 CDS 74152762 74152880 74152762 ID=Msa0621870-mRNA-1:cds;Parent=Msa0621870-mRNA-1
chr4_2 CDS 74152961 74153043 74152961 ID=Msa0621870-mRNA-1:cds;Parent=Msa0621870-mRNA-1
chr4_2 CDS 74154431 74154552 74154431 ID=Msa0621870-mRNA-1:cds;Parent=Msa0621870-mRNA-1
chr4_2 CDS 74155225 74155386 74155225 ID=Msa0621870-mRNA-1:cds;Parent=Msa0621870-mRNA-1
chr4_2 CDS 74155995 74156088 74155995 ID=Msa0621870-mRNA-1:cds;Parent=Msa0621870-mRNA-1
chr4_2 CDS 74156766 74156961 74156766 ID=Msa0621870-mRNA-1:cds;Parent=Msa0621870-mRNA-1
chr4_2 three_prime_UTR 74157040 74157206 74157040 ID=Msa0621870-mRNA-1:three_prime_utr;Parent=Msa0621870-mRNA-1
chr4_2 three_prime_UTR 74157229 74157400 74157229 ID=Msa0621870-mRNA-1:three_prime_utr;Parent=Msa0621870-mRNA-1
Gene Sequence

>Msa0621870

ATGGGTATCTTTGTAGTACAAAATGCTCACTCGCTTCCACTATTATCAAATTCATCATCACTTTCTATAACTCCTTCATTATTTCAATATCACCAGGTTCATTTTTCTAATGTTCCCAATCACAAACCAGTAACCAGAAGAAGAATCAGAAGCACCCTCAACTTCAACATGTCTCTCTCTTCAGAAAAACCAGGTTTTGAACAAAAGAGAGTCATAATACCCAATAAGCATGGTGAAAAATTAGTGGGTATATTGCAAGATTCTGGAACTAAGGAGATTGTAATCTTGTGCCATGGTTTTCGCTCCTCAAAAGAATCAAAAACCCTGGTGAACCTTGCTGCTGCATTGGAAAAAGCTGGAATCAGTTCTTTTCGCTTTGACTTTTCTGGAAATGGGGAAAGTGATGGTTCGTTTCAGTATGGCAACTACTGGAGAGAGGCTGAGGATTTACATGCCGTAACTCAACATTTCCTAGAATCAAACCGTTTGGCGACTGCAATTGTTGGGCACAGTAAAGGTGGTGGTGTGGTGCTTCTATATGCTTCAAAATATCATGACATCAAAGCAGTCGTCAATCTCTCTGGACGCTATGATCTGAAGGATGGAATTGAAGAGCGCCTTGGAAAAGGTTATATGGAAAGAATTAAGGAGGATGGTTTCATTGACGTGAAGAGGCCAGGAAGTTCCGACTACCGTGTGACTCTGGAAAGTTTGCTGGATCGCCTAAATACAAATATGCATGAAGCATGCCTTCAGATTGATAAAGAATGCAGGGTCCTTACAGTTCACGGTTCTTCAGACACCGTTATATCTGTTGGAGATGCATCTAAGTTTGCCCAGATTTTACCAAACCACTCACTACATATCATAGAAGGAGCTGATCATCCCTACACTAATCACCAAGATGAGCTAGCTTCGTTAGTTGTTAACTTCATAAAAGAAACCATACACCAAGATAGGGATACTTAG

Protein sequence

>Msa0621870

MGIFVVQNAHSLPLLSNSSSLSITPSLFQYHQVHFSNVPNHKPVTRRRIRSTLNFNMSLSSEKPGFEQKRVIIPNKHGEKLVGILQDSGTKEIVILCHGFRSSKESKTLVNLAAALEKAGISSFRFDFSGNGESDGSFQYGNYWREAEDLHAVTQHFLESNRLATAIVGHSKGGGVVLLYASKYHDIKAVVNLSGRYDLKDGIEERLGKGYMERIKEDGFIDVKRPGSSDYRVTLESLLDRLNTNMHEACLQIDKECRVLTVHGSSDTVISVGDASKFAQILPNHSLHIIEGADHPYTNHQDELASLVVNFIKETIHQDRDT*