AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0752290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0752290 MtrunA17_Chr5g0393651 89.510 143 6 1 1 134 1 143 2.30e-78 228
Msa0752290 MtrunA17_Chr5g0408111 42.105 95 55 0 39 133 37 131 1.15e-24 91.7
Msa0752290 MtrunA17_Chr3g0099661 50.877 114 11 5 21 130 29 101 1.25e-18 80.9
Msa0752290 MtrunA17_Chr3g0100001 42.424 66 38 0 67 132 30 95 5.62e-17 70.9
Msa0752290 MtrunA17_Chr3g0100321 41.111 90 51 2 45 133 147 235 1.44e-15 71.6
Msa0752290 MtrunA17_Chr5g0402651 40.580 69 40 1 63 131 138 205 8.43e-15 69.3
Msa0752290 MtrunA17_Chr5g0402651 37.805 82 50 1 52 133 260 340 3.96e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0752290 AT2G14880.1 57.241 145 46 6 1 133 1 141 3.15e-42 137
Msa0752290 AT4G34290.1 51.429 140 51 3 6 133 10 144 9.95e-37 123
Msa0752290 AT3G03590.1 52.564 78 37 0 56 133 63 140 2.19e-25 94.0
Msa0752290 AT1G31760.1 40.594 101 59 1 33 132 8 108 6.53e-25 92.0
Msa0752290 AT2G35605.1 47.253 91 48 0 42 132 15 105 1.25e-24 91.3
Msa0752290 AT2G14880.3 55.294 85 34 3 13 95 21 103 4.35e-21 82.0
Msa0752290 AT2G14880.2 55.294 85 34 3 13 95 21 103 4.35e-21 82.0
Msa0752290 AT4G26810.2 34.000 100 61 2 33 132 1 95 1.72e-15 67.8
Msa0752290 AT4G26810.1 34.000 100 61 2 33 132 1 95 1.72e-15 67.8
Msa0752290 AT4G22360.1 37.624 101 54 3 41 133 173 272 1.80e-15 72.0
Msa0752290 AT1G49520.1 37.209 86 50 2 46 131 243 324 2.13e-13 65.9
Msa0752290 AT1G49520.1 32.895 76 50 1 56 131 101 175 2.15e-11 60.5
Msa0752290 AT3G48600.1 33.036 112 71 2 27 134 2 113 2.48e-13 63.9
Msa0752290 AT3G48600.2 33.036 112 71 2 27 134 2 113 6.37e-13 63.5
Msa0752290 AT3G19080.2 35.165 91 56 2 41 131 250 337 8.34e-13 64.3
Msa0752290 AT3G19080.2 34.211 76 49 1 56 131 115 189 1.28e-11 60.8
Msa0752290 AT3G19080.4 34.783 92 57 2 41 132 250 338 1.55e-12 63.5
Msa0752290 AT3G19080.4 33.766 77 50 1 56 132 115 190 1.98e-11 60.5
Msa0752290 AT3G19080.3 34.783 92 57 2 41 132 250 338 1.55e-12 63.5
Msa0752290 AT3G19080.3 33.766 77 50 1 56 132 115 190 1.98e-11 60.5
Msa0752290 AT3G19080.1 34.783 92 57 2 41 132 250 338 1.57e-12 63.5
Msa0752290 AT3G19080.1 33.766 77 50 1 56 132 115 190 1.99e-11 60.5

Find 69 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGCCATCTTCTTTCTTTCT+TGG 0.097589 5_2:+5872299 None:intergenic
CCCAAATGCTCTTGAGGGCT+TGG 0.201712 5_2:+5872047 None:intergenic
GTGTATGGAACTGTTATATT+TGG 0.267520 5_2:-5870926 Msa0752290:three_prime_UTR
GTGGCCTTTGCCTTCAATTA+AGG 0.272510 5_2:+5870995 None:intergenic
GCTCTTGAGGGCTTGGGTTC+GGG 0.285856 5_2:+5872054 None:intergenic
TGCTCTTGAGGGCTTGGGTT+CGG 0.309630 5_2:+5872053 None:intergenic
CCCAAGCCCTCAAGAGCATT+TGG 0.313567 5_2:-5872048 Msa0752290:CDS
GAGCATTTGGGCCCACATTA+AGG 0.313899 5_2:-5872035 Msa0752290:CDS
CTTGGAGTCCTGAGAGTTAG+AGG 0.343205 5_2:+5872241 None:intergenic
TTCCCACACCTTCTTCTTTG+CGG 0.351253 5_2:-5872210 Msa0752290:CDS
CCAAATGCTCTTGAGGGCTT+GGG 0.352861 5_2:+5872048 None:intergenic
GGCTTGGGTTCGGGAAATCT+CGG 0.358689 5_2:+5872063 None:intergenic
GTTGATATGCTTGAGATTGC+TGG 0.364505 5_2:-5871036 Msa0752290:CDS
GCCCTCACTTCCTTAATTGA+AGG 0.384410 5_2:-5871005 Msa0752290:exon
CCGACGAGGTCTTGCATCTC+GGG 0.390790 5_2:+5872091 None:intergenic
ATCATATGAAGGCCACGTTT+TGG 0.393931 5_2:-5870948 Msa0752290:three_prime_UTR
AACTAAACCTTGAGACTTAG+TGG 0.395134 5_2:+5870976 None:intergenic
CACACCTTCTTCTTTGCGGA+TGG 0.399835 5_2:-5872206 Msa0752290:CDS
TAAGGCTACTACTATGTTGC+AGG 0.405113 5_2:+5870892 None:intergenic
GCCGACGAGGTCTTGCATCT+CGG 0.410466 5_2:+5872090 None:intergenic
TTGGTTTGAATAGAATAGAA+TGG 0.425299 5_2:+5872318 None:intergenic
ACAGTTGAGCGGAGTGAGTA+AGG 0.429709 5_2:-5872392 Msa0752290:five_prime_UTR
AAACTGAAGAAGGTATTTGC+AGG 0.431242 5_2:-5871069 Msa0752290:CDS
CCAAGCCCTCAAGAGCATTT+GGG 0.438538 5_2:-5872047 Msa0752290:CDS
AAAGAAGATGGCGGTTTCAA+TGG 0.445972 5_2:-5872290 Msa0752290:exon
GCTTGGGTTCGGGAAATCTC+GGG 0.463473 5_2:+5872064 None:intergenic
CATCTCCTCCTCTAACTCTC+AGG 0.478833 5_2:-5872249 Msa0752290:CDS
TAGTACTTCAGGTACAGAAC+AGG 0.480293 5_2:-5870854 Msa0752290:three_prime_UTR
CATTAAGGAACACAATCTTC+AGG 0.486338 5_2:-5872020 Msa0752290:intron
GTCTCTCAGCCTCCACCCAC+CGG 0.498374 5_2:-5872154 Msa0752290:CDS
GCCTTCAATTAAGGAAGTGA+GGG 0.502350 5_2:+5871004 None:intergenic
GTGGGCCCAAATGCTCTTGA+GGG 0.503891 5_2:+5872042 None:intergenic
CAGTTGAGCGGAGTGAGTAA+GGG 0.515067 5_2:-5872391 Msa0752290:five_prime_UTR
AAACCAAGAAAGAAAGAAGA+TGG 0.518339 5_2:-5872302 Msa0752290:exon
CTCTAACTCTCAGGACTCCA+AGG 0.525205 5_2:-5872240 Msa0752290:CDS
TGTGGGCCCAAATGCTCTTG+AGG 0.532300 5_2:+5872041 None:intergenic
GGAGCCATCCGCAAAGAAGA+AGG 0.536269 5_2:+5872202 None:intergenic
GAAGATTGTGTTCCTTAATG+TGG 0.537334 5_2:+5872023 None:intergenic
TGGAGGCTGAGAGACGGTGG+CGG 0.544798 5_2:+5872162 None:intergenic
AGGAGATGATAATAATAGTC+CGG 0.546560 5_2:+5872264 None:intergenic
GGTGGGTGGAGGCTGAGAGA+CGG 0.548280 5_2:+5872156 None:intergenic
TGCCTTCAATTAAGGAAGTG+AGG 0.555494 5_2:+5871003 None:intergenic
AAGATTGTGTTCCTTAATGT+GGG 0.565657 5_2:+5872024 None:intergenic
CGGTGGCGGAAGTAACTGTT+CGG 0.576626 5_2:+5872176 None:intergenic
CTGTGATGAGAAACTGAAGA+AGG 0.578111 5_2:-5871079 Msa0752290:CDS
ATGGCGGTTTCAATGGCTAC+CGG 0.582248 5_2:-5872283 Msa0752290:CDS
AGTTGAGCGGAGTGAGTAAG+GGG 0.583079 5_2:-5872390 Msa0752290:five_prime_UTR
GGTGTGGGAAACGCAAACCT+TGG 0.584167 5_2:+5872223 None:intergenic
AACTGAAGAAGGTATTTGCA+GGG 0.589332 5_2:-5871068 Msa0752290:CDS
CCCACCGGAGGCAAAATTCG+CGG 0.592965 5_2:-5872139 Msa0752290:CDS
ACTTCCTTAATTGAAGGCAA+AGG 0.598604 5_2:-5870999 Msa0752290:exon
GGGTGGAGGCTGAGAGACGG+TGG 0.602966 5_2:+5872159 None:intergenic
GCAAAGGCCACTAAGTCTCA+AGG 0.608526 5_2:-5870983 Msa0752290:three_prime_UTR
AAATCTCGGGTTGGCCGACG+AGG 0.609292 5_2:+5872077 None:intergenic
GGGTTCGGGAAATCTCGGGT+TGG 0.610231 5_2:+5872068 None:intergenic
TCTCAGCCTCCACCCACCGG+AGG 0.623094 5_2:-5872151 Msa0752290:CDS
CGACGAGGTCTTGCATCTCG+GGG 0.623606 5_2:+5872092 None:intergenic
TTGAGCGGAGTGAGTAAGGG+GGG 0.626354 5_2:-5872388 Msa0752290:five_prime_UTR
CCCGAGATGCAAGACCTCGT+CGG 0.633591 5_2:-5872091 Msa0752290:CDS
CATCCGCAAAGAAGAAGGTG+TGG 0.642641 5_2:+5872207 None:intergenic
ATCCGCAAAGAAGAAGGTGT+GGG 0.644955 5_2:+5872208 None:intergenic
AGAAGGAGATAACAGTTGAG+CGG 0.660905 5_2:-5872403 None:intergenic
TGAGCGGAGTGAGTAAGGGG+GGG 0.664442 5_2:-5872387 Msa0752290:five_prime_UTR
GGAGTCCTGAGAGTTAGAGG+AGG 0.667796 5_2:+5872244 None:intergenic
GACGAGGTCTTGCATCTCGG+GGG 0.684378 5_2:+5872093 None:intergenic
GTTGAGCGGAGTGAGTAAGG+GGG 0.689094 5_2:-5872389 Msa0752290:five_prime_UTR
GCGGAAGTAACTGTTCGGAG+TGG 0.691914 5_2:+5872181 None:intergenic
CAGTTCCATACACCAAAACG+TGG 0.702843 5_2:+5870936 None:intergenic
CCAAGAAAGAAAGAAGATGG+CGG 0.709706 5_2:-5872299 Msa0752290:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAATAATAATAATTAAA+AGG + chr5_2:5872328-5872347 None:intergenic 0.0%
!! TAATTATTATTATTATTATT+AGG - chr5_2:5872330-5872349 Msa0752290:five_prime_UTR 0.0%
!! TAATAATAATAATAATTAAA+AGG + chr5_2:5872328-5872347 None:intergenic 0.0%
!! TAATTATTATTATTATTATT+AGG - chr5_2:5872330-5872349 Msa0752290:five_prime_UTR 0.0%
!!! GTGAAATTTTAATTTAAAAA+AGG + chr5_2:5871142-5871161 None:intergenic 10.0%
!!! TAAAAAACAAATAATTTGTA+CGG + chr5_2:5871170-5871189 None:intergenic 10.0%
!! ATGAATATGAATATATTATT+AGG - chr5_2:5871348-5871367 Msa0752290:intron 10.0%
!!! ATTATTATTAGGTTTTTTAT+TGG - chr5_2:5872341-5872360 Msa0752290:five_prime_UTR 10.0%
!!! GTGAAATTTTAATTTAAAAA+AGG + chr5_2:5871142-5871161 None:intergenic 10.0%
!!! TAAAAAACAAATAATTTGTA+CGG + chr5_2:5871170-5871189 None:intergenic 10.0%
!! ATGAATATGAATATATTATT+AGG - chr5_2:5871348-5871367 Msa0752290:intron 10.0%
!!! ATTATTATTAGGTTTTTTAT+TGG - chr5_2:5872341-5872360 Msa0752290:five_prime_UTR 10.0%
!! AATAATGAAAAGAATAAACA+AGG + chr5_2:5871257-5871276 None:intergenic 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG - chr5_2:5871462-5871481 Msa0752290:intron 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG - chr5_2:5871463-5871482 Msa0752290:intron 15.0%
!!! TTAGTTTTTATATCATATGA+AGG - chr5_2:5872137-5872156 Msa0752290:CDS 15.0%
!! AATAATGAAAAGAATAAACA+AGG + chr5_2:5871257-5871276 None:intergenic 15.0%
!!! TTTATTTTTAACCAACTAAA+TGG - chr5_2:5871462-5871481 Msa0752290:intron 15.0%
!!! TTATTTTTAACCAACTAAAT+GGG - chr5_2:5871463-5871482 Msa0752290:intron 15.0%
!!! TTAGTTTTTATATCATATGA+AGG - chr5_2:5872137-5872156 Msa0752290:CDS 15.0%
!! TCAAAATAAAACATGAACAA+TGG + chr5_2:5871306-5871325 None:intergenic 20.0%
!! TATATTATTAGGCACTAATT+TGG - chr5_2:5871359-5871378 Msa0752290:intron 20.0%
!! ATATTATTAGGCACTAATTT+GGG - chr5_2:5871360-5871379 Msa0752290:intron 20.0%
!! AAAAGAATGAAAACTAGATT+TGG + chr5_2:5871445-5871464 None:intergenic 20.0%
!!! TATGCAATTCTGTTTTATAA+TGG - chr5_2:5871662-5871681 Msa0752290:intron 20.0%
!! AACATGTAGTTTAGATTATA+TGG + chr5_2:5871722-5871741 None:intergenic 20.0%
!! CTAACAAAAACAAAAAACTA+AGG + chr5_2:5872225-5872244 None:intergenic 20.0%
!! TCAAAATAAAACATGAACAA+TGG + chr5_2:5871306-5871325 None:intergenic 20.0%
!! TATATTATTAGGCACTAATT+TGG - chr5_2:5871359-5871378 Msa0752290:intron 20.0%
!! ATATTATTAGGCACTAATTT+GGG - chr5_2:5871360-5871379 Msa0752290:intron 20.0%
!! AAAAGAATGAAAACTAGATT+TGG + chr5_2:5871445-5871464 None:intergenic 20.0%
!!! TATGCAATTCTGTTTTATAA+TGG - chr5_2:5871662-5871681 Msa0752290:intron 20.0%
!! AACATGTAGTTTAGATTATA+TGG + chr5_2:5871722-5871741 None:intergenic 20.0%
!! CTAACAAAAACAAAAAACTA+AGG + chr5_2:5872225-5872244 None:intergenic 20.0%
!! TTGGTTTGAATAGAATAGAA+TGG + chr5_2:5870781-5870800 None:intergenic 25.0%
!! ACAAATAATTTGTACGGTTT+GGG + chr5_2:5871164-5871183 None:intergenic 25.0%
!! AACAAATAATTTGTACGGTT+TGG + chr5_2:5871165-5871184 None:intergenic 25.0%
!!! CAAAAAGTTGATGTACAAAT+GGG + chr5_2:5871492-5871511 None:intergenic 25.0%
!!! TCAAAAAGTTGATGTACAAA+TGG + chr5_2:5871493-5871512 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG - chr5_2:5871694-5871713 Msa0752290:intron 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG - chr5_2:5872231-5872250 Msa0752290:CDS 25.0%
!! TTGGTTTGAATAGAATAGAA+TGG + chr5_2:5870781-5870800 None:intergenic 25.0%
!! ACAAATAATTTGTACGGTTT+GGG + chr5_2:5871164-5871183 None:intergenic 25.0%
!! AACAAATAATTTGTACGGTT+TGG + chr5_2:5871165-5871184 None:intergenic 25.0%
!!! CAAAAAGTTGATGTACAAAT+GGG + chr5_2:5871492-5871511 None:intergenic 25.0%
!!! TCAAAAAGTTGATGTACAAA+TGG + chr5_2:5871493-5871512 None:intergenic 25.0%
!! ATGGATTCTATTGTCAATTT+TGG - chr5_2:5871694-5871713 Msa0752290:intron 25.0%
!!! TTTGTTTTTGTTAGTACTTC+AGG - chr5_2:5872231-5872250 Msa0752290:CDS 25.0%
AAACCAAGAAAGAAAGAAGA+TGG - chr5_2:5870794-5870813 Msa0752290:three_prime_UTR 30.0%
AGGAGATGATAATAATAGTC+CGG + chr5_2:5870835-5870854 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG + chr5_2:5871075-5871094 None:intergenic 30.0%
TATCCTCAAGAAAAAGAGAA+AGG + chr5_2:5871114-5871133 None:intergenic 30.0%
!! TTTTGACTCAACAACCAATT+TGG - chr5_2:5871320-5871339 Msa0752290:intron 30.0%
CATATTCATTCAGACCAAAT+TGG + chr5_2:5871337-5871356 None:intergenic 30.0%
TTGGGAATAATCGGTTATTA+TGG - chr5_2:5871378-5871397 Msa0752290:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG - chr5_2:5871379-5871398 Msa0752290:intron 30.0%
AAATTTGTGCAATTGAAACG+CGG + chr5_2:5871627-5871646 None:intergenic 30.0%
! TTTATAATGGTTGATGCTGA+TGG - chr5_2:5871675-5871694 Msa0752290:intron 30.0%
CATTCAATTTATGGATGATG+CGG + chr5_2:5871857-5871876 None:intergenic 30.0%
TCCATAAATTGAATGTTCTC+TGG - chr5_2:5871862-5871881 Msa0752290:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG - chr5_2:5871863-5871882 Msa0752290:intron 30.0%
ATAAATACGTTCAGCAACTT+TGG - chr5_2:5871921-5871940 Msa0752290:intron 30.0%
GTGTATGGAACTGTTATATT+TGG - chr5_2:5872170-5872189 Msa0752290:CDS 30.0%
GCTTATTTATTATTCTGCTC+AGG - chr5_2:5872401-5872420 Msa0752290:five_prime_UTR 30.0%
AAACCAAGAAAGAAAGAAGA+TGG - chr5_2:5870794-5870813 Msa0752290:three_prime_UTR 30.0%
AGGAGATGATAATAATAGTC+CGG + chr5_2:5870835-5870854 None:intergenic 30.0%
AAGATTGTGTTCCTTAATGT+GGG + chr5_2:5871075-5871094 None:intergenic 30.0%
TATCCTCAAGAAAAAGAGAA+AGG + chr5_2:5871114-5871133 None:intergenic 30.0%
!! TTTTGACTCAACAACCAATT+TGG - chr5_2:5871320-5871339 Msa0752290:intron 30.0%
CATATTCATTCAGACCAAAT+TGG + chr5_2:5871337-5871356 None:intergenic 30.0%
TTGGGAATAATCGGTTATTA+TGG - chr5_2:5871378-5871397 Msa0752290:intron 30.0%
TGGGAATAATCGGTTATTAT+GGG - chr5_2:5871379-5871398 Msa0752290:intron 30.0%
AAATTTGTGCAATTGAAACG+CGG + chr5_2:5871627-5871646 None:intergenic 30.0%
! TTTATAATGGTTGATGCTGA+TGG - chr5_2:5871675-5871694 Msa0752290:intron 30.0%
CATTCAATTTATGGATGATG+CGG + chr5_2:5871857-5871876 None:intergenic 30.0%
TCCATAAATTGAATGTTCTC+TGG - chr5_2:5871862-5871881 Msa0752290:intron 30.0%
CCATAAATTGAATGTTCTCT+GGG - chr5_2:5871863-5871882 Msa0752290:intron 30.0%
ATAAATACGTTCAGCAACTT+TGG - chr5_2:5871921-5871940 Msa0752290:intron 30.0%
GTGTATGGAACTGTTATATT+TGG - chr5_2:5872170-5872189 Msa0752290:CDS 30.0%
GAAGATTGTGTTCCTTAATG+TGG + chr5_2:5871076-5871095 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG - chr5_2:5871076-5871095 Msa0752290:CDS 35.0%
! TCTCCTTTCTCTTTTTCTTG+AGG - chr5_2:5871108-5871127 Msa0752290:CDS 35.0%
TAAACTGCACAGATTCAGAA+TGG - chr5_2:5871199-5871218 Msa0752290:intron 35.0%
GGCACTAATTTGGGAATAAT+CGG - chr5_2:5871369-5871388 Msa0752290:intron 35.0%
GGGAATAATCGGTTATTATG+GGG - chr5_2:5871380-5871399 Msa0752290:intron 35.0%
GGAATAATCGGTTATTATGG+GGG - chr5_2:5871381-5871400 Msa0752290:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG - chr5_2:5871395-5871414 Msa0752290:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG - chr5_2:5871396-5871415 Msa0752290:intron 35.0%
AAATGGGATTCCCATTTAGT+TGG + chr5_2:5871476-5871495 None:intergenic 35.0%
AAAGCAGAGTTAGTACTTGA+TGG + chr5_2:5871603-5871622 None:intergenic 35.0%
CCCAGAGAACATTCAATTTA+TGG + chr5_2:5871866-5871885 None:intergenic 35.0%
TTATGAATGCAGGATAGCAT+TGG + chr5_2:5871905-5871924 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG + chr5_2:5871915-5871934 None:intergenic 35.0%
!! CAACTTTGGTAACGTTTGAT+TGG - chr5_2:5871935-5871954 Msa0752290:intron 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG + chr5_2:5871996-5872015 None:intergenic 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG - chr5_2:5872027-5872046 Msa0752290:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG - chr5_2:5872028-5872047 Msa0752290:CDS 35.0%
ACTTCCTTAATTGAAGGCAA+AGG - chr5_2:5872097-5872116 Msa0752290:CDS 35.0%
AACTAAACCTTGAGACTTAG+TGG + chr5_2:5872123-5872142 None:intergenic 35.0%
GAAGATTGTGTTCCTTAATG+TGG + chr5_2:5871076-5871095 None:intergenic 35.0%
CATTAAGGAACACAATCTTC+AGG - chr5_2:5871076-5871095 Msa0752290:CDS 35.0%
! TCTCCTTTCTCTTTTTCTTG+AGG - chr5_2:5871108-5871127 Msa0752290:CDS 35.0%
TAAACTGCACAGATTCAGAA+TGG - chr5_2:5871199-5871218 Msa0752290:intron 35.0%
GGCACTAATTTGGGAATAAT+CGG - chr5_2:5871369-5871388 Msa0752290:intron 35.0%
GGGAATAATCGGTTATTATG+GGG - chr5_2:5871380-5871399 Msa0752290:intron 35.0%
GGAATAATCGGTTATTATGG+GGG - chr5_2:5871381-5871400 Msa0752290:intron 35.0%
TTATGGGGGCTAAATTCAAT+TGG - chr5_2:5871395-5871414 Msa0752290:intron 35.0%
TATGGGGGCTAAATTCAATT+GGG - chr5_2:5871396-5871415 Msa0752290:intron 35.0%
AAATGGGATTCCCATTTAGT+TGG + chr5_2:5871476-5871495 None:intergenic 35.0%
AAAGCAGAGTTAGTACTTGA+TGG + chr5_2:5871603-5871622 None:intergenic 35.0%
CCCAGAGAACATTCAATTTA+TGG + chr5_2:5871866-5871885 None:intergenic 35.0%
TTATGAATGCAGGATAGCAT+TGG + chr5_2:5871905-5871924 None:intergenic 35.0%
CTGAACGTATTTATGAATGC+AGG + chr5_2:5871915-5871934 None:intergenic 35.0%
!! CAACTTTGGTAACGTTTGAT+TGG - chr5_2:5871935-5871954 Msa0752290:intron 35.0%
! GAATAAGCCTCTTTTTCTCA+GGG + chr5_2:5871996-5872015 None:intergenic 35.0%
!! AAACTGAAGAAGGTATTTGC+AGG - chr5_2:5872027-5872046 Msa0752290:CDS 35.0%
!! AACTGAAGAAGGTATTTGCA+GGG - chr5_2:5872028-5872047 Msa0752290:CDS 35.0%
ACTTCCTTAATTGAAGGCAA+AGG - chr5_2:5872097-5872116 Msa0752290:CDS 35.0%
AACTAAACCTTGAGACTTAG+TGG + chr5_2:5872123-5872142 None:intergenic 35.0%
CCAAGAAAGAAAGAAGATGG+CGG - chr5_2:5870797-5870816 Msa0752290:three_prime_UTR 40.0%
! AAAGAAGATGGCGGTTTCAA+TGG - chr5_2:5870806-5870825 Msa0752290:three_prime_UTR 40.0%
!!! ATCTCGGGGGAGATTTTTTT+AGG + chr5_2:5870993-5871012 None:intergenic 40.0%
ACGTAGAACAAGTGCAAACA+AGG + chr5_2:5871543-5871562 None:intergenic 40.0%
AATTAACCTGTCTGTCTGTC+TGG - chr5_2:5871577-5871596 Msa0752290:intron 40.0%
GTCTGTACAAGAGTAGTTGT+AGG + chr5_2:5871808-5871827 None:intergenic 40.0%
! GCAGGATAGCATTGGATTAA+TGG + chr5_2:5871897-5871916 None:intergenic 40.0%
TTCAGAACCCTGAGAAAAAG+AGG - chr5_2:5871986-5872005 Msa0752290:intron 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG + chr5_2:5871997-5872016 None:intergenic 40.0%
CTGTGATGAGAAACTGAAGA+AGG - chr5_2:5872017-5872036 Msa0752290:intron 40.0%
GTTGATATGCTTGAGATTGC+TGG - chr5_2:5872060-5872079 Msa0752290:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG + chr5_2:5872095-5872114 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG + chr5_2:5872096-5872115 None:intergenic 40.0%
! ATCATATGAAGGCCACGTTT+TGG - chr5_2:5872148-5872167 Msa0752290:CDS 40.0%
TAAGGCTACTACTATGTTGC+AGG + chr5_2:5872207-5872226 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG - chr5_2:5872242-5872261 Msa0752290:CDS 40.0%
CCAAGAAAGAAAGAAGATGG+CGG - chr5_2:5870797-5870816 Msa0752290:three_prime_UTR 40.0%
! AAAGAAGATGGCGGTTTCAA+TGG - chr5_2:5870806-5870825 Msa0752290:three_prime_UTR 40.0%
!!! ATCTCGGGGGAGATTTTTTT+AGG + chr5_2:5870993-5871012 None:intergenic 40.0%
ACGTAGAACAAGTGCAAACA+AGG + chr5_2:5871543-5871562 None:intergenic 40.0%
AATTAACCTGTCTGTCTGTC+TGG - chr5_2:5871577-5871596 Msa0752290:intron 40.0%
GTCTGTACAAGAGTAGTTGT+AGG + chr5_2:5871808-5871827 None:intergenic 40.0%
! GCAGGATAGCATTGGATTAA+TGG + chr5_2:5871897-5871916 None:intergenic 40.0%
TTCAGAACCCTGAGAAAAAG+AGG - chr5_2:5871986-5872005 Msa0752290:intron 40.0%
! CGAATAAGCCTCTTTTTCTC+AGG + chr5_2:5871997-5872016 None:intergenic 40.0%
CTGTGATGAGAAACTGAAGA+AGG - chr5_2:5872017-5872036 Msa0752290:intron 40.0%
GTTGATATGCTTGAGATTGC+TGG - chr5_2:5872060-5872079 Msa0752290:CDS 40.0%
GCCTTCAATTAAGGAAGTGA+GGG + chr5_2:5872095-5872114 None:intergenic 40.0%
TGCCTTCAATTAAGGAAGTG+AGG + chr5_2:5872096-5872115 None:intergenic 40.0%
! ATCATATGAAGGCCACGTTT+TGG - chr5_2:5872148-5872167 Msa0752290:CDS 40.0%
TAAGGCTACTACTATGTTGC+AGG + chr5_2:5872207-5872226 None:intergenic 40.0%
TAGTACTTCAGGTACAGAAC+AGG - chr5_2:5872242-5872261 Msa0752290:CDS 40.0%
CCGCCATCTTCTTTCTTTCT+TGG + chr5_2:5870800-5870819 None:intergenic 45.0%
TTCCCACACCTTCTTCTTTG+CGG - chr5_2:5870886-5870905 Msa0752290:three_prime_UTR 45.0%
! ATCCGCAAAGAAGAAGGTGT+GGG + chr5_2:5870891-5870910 None:intergenic 45.0%
! AATACCGCGAATTTTGCCTC+CGG + chr5_2:5870964-5870983 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG - chr5_2:5872091-5872110 Msa0752290:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG + chr5_2:5872104-5872123 None:intergenic 45.0%
CAGTTCCATACACCAAAACG+TGG + chr5_2:5872163-5872182 None:intergenic 45.0%
CCGCCATCTTCTTTCTTTCT+TGG + chr5_2:5870800-5870819 None:intergenic 45.0%
TTCCCACACCTTCTTCTTTG+CGG - chr5_2:5870886-5870905 Msa0752290:three_prime_UTR 45.0%
! ATCCGCAAAGAAGAAGGTGT+GGG + chr5_2:5870891-5870910 None:intergenic 45.0%
! AATACCGCGAATTTTGCCTC+CGG + chr5_2:5870964-5870983 None:intergenic 45.0%
GCCCTCACTTCCTTAATTGA+AGG - chr5_2:5872091-5872110 Msa0752290:CDS 45.0%
GTGGCCTTTGCCTTCAATTA+AGG + chr5_2:5872104-5872123 None:intergenic 45.0%
CAGTTCCATACACCAAAACG+TGG + chr5_2:5872163-5872182 None:intergenic 45.0%
ACAGTTGAGCGGAGTGAGTA+AGG - chr5_2:5870704-5870723 Msa0752290:three_prime_UTR 50.0%
CAGTTGAGCGGAGTGAGTAA+GGG - chr5_2:5870705-5870724 Msa0752290:three_prime_UTR 50.0%
AGTTGAGCGGAGTGAGTAAG+GGG - chr5_2:5870706-5870725 Msa0752290:three_prime_UTR 50.0%
ATGGCGGTTTCAATGGCTAC+CGG - chr5_2:5870813-5870832 Msa0752290:three_prime_UTR 50.0%
CATCTCCTCCTCTAACTCTC+AGG - chr5_2:5870847-5870866 Msa0752290:three_prime_UTR 50.0%
CTTGGAGTCCTGAGAGTTAG+AGG + chr5_2:5870858-5870877 None:intergenic 50.0%
CTCTAACTCTCAGGACTCCA+AGG - chr5_2:5870856-5870875 Msa0752290:three_prime_UTR 50.0%
CATCCGCAAAGAAGAAGGTG+TGG + chr5_2:5870892-5870911 None:intergenic 50.0%
CACACCTTCTTCTTTGCGGA+TGG - chr5_2:5870890-5870909 Msa0752290:three_prime_UTR 50.0%
CCAAATGCTCTTGAGGGCTT+GGG + chr5_2:5871051-5871070 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG - chr5_2:5871049-5871068 Msa0752290:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG - chr5_2:5871061-5871080 Msa0752290:CDS 50.0%
GGCTGCAGCAGAAAATTGTG+AGG - chr5_2:5871417-5871436 Msa0752290:intron 50.0%
GCAAAGGCCACTAAGTCTCA+AGG - chr5_2:5872113-5872132 Msa0752290:CDS 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG - chr5_2:5872155-5872174 Msa0752290:CDS 50.0%
ACAGTTGAGCGGAGTGAGTA+AGG - chr5_2:5870704-5870723 Msa0752290:three_prime_UTR 50.0%
CAGTTGAGCGGAGTGAGTAA+GGG - chr5_2:5870705-5870724 Msa0752290:three_prime_UTR 50.0%
AGTTGAGCGGAGTGAGTAAG+GGG - chr5_2:5870706-5870725 Msa0752290:three_prime_UTR 50.0%
ATGGCGGTTTCAATGGCTAC+CGG - chr5_2:5870813-5870832 Msa0752290:three_prime_UTR 50.0%
CATCTCCTCCTCTAACTCTC+AGG - chr5_2:5870847-5870866 Msa0752290:three_prime_UTR 50.0%
CTTGGAGTCCTGAGAGTTAG+AGG + chr5_2:5870858-5870877 None:intergenic 50.0%
CTCTAACTCTCAGGACTCCA+AGG - chr5_2:5870856-5870875 Msa0752290:three_prime_UTR 50.0%
CATCCGCAAAGAAGAAGGTG+TGG + chr5_2:5870892-5870911 None:intergenic 50.0%
CACACCTTCTTCTTTGCGGA+TGG - chr5_2:5870890-5870909 Msa0752290:three_prime_UTR 50.0%
CCAAATGCTCTTGAGGGCTT+GGG + chr5_2:5871051-5871070 None:intergenic 50.0%
!! CCAAGCCCTCAAGAGCATTT+GGG - chr5_2:5871049-5871068 Msa0752290:CDS 50.0%
GAGCATTTGGGCCCACATTA+AGG - chr5_2:5871061-5871080 Msa0752290:CDS 50.0%
GGCTGCAGCAGAAAATTGTG+AGG - chr5_2:5871417-5871436 Msa0752290:intron 50.0%
GCAAAGGCCACTAAGTCTCA+AGG - chr5_2:5872113-5872132 Msa0752290:CDS 50.0%
!! GAAGGCCACGTTTTGGTGTA+TGG - chr5_2:5872155-5872174 Msa0752290:CDS 50.0%
GTTGAGCGGAGTGAGTAAGG+GGG - chr5_2:5870707-5870726 Msa0752290:three_prime_UTR 55.0%
TTGAGCGGAGTGAGTAAGGG+GGG - chr5_2:5870708-5870727 Msa0752290:three_prime_UTR 55.0%
GTAAGGGGGGGATAGTGTGT+TGG - chr5_2:5870721-5870740 Msa0752290:three_prime_UTR 55.0%
GGAGTCCTGAGAGTTAGAGG+AGG + chr5_2:5870855-5870874 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG + chr5_2:5870876-5870895 None:intergenic 55.0%
GGAGCCATCCGCAAAGAAGA+AGG + chr5_2:5870897-5870916 None:intergenic 55.0%
GCGGAAGTAACTGTTCGGAG+TGG + chr5_2:5870918-5870937 None:intergenic 55.0%
!! CGGTGGCGGAAGTAACTGTT+CGG + chr5_2:5870923-5870942 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG + chr5_2:5871035-5871054 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG + chr5_2:5871036-5871055 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG + chr5_2:5871046-5871065 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG - chr5_2:5871048-5871067 Msa0752290:CDS 55.0%
CCCAAATGCTCTTGAGGGCT+TGG + chr5_2:5871052-5871071 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG + chr5_2:5871057-5871076 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG + chr5_2:5871058-5871077 None:intergenic 55.0%
TGATGGCCAGACAGACAGAC+AGG + chr5_2:5871586-5871605 None:intergenic 55.0%
GTTGAGCGGAGTGAGTAAGG+GGG - chr5_2:5870707-5870726 Msa0752290:three_prime_UTR 55.0%
TTGAGCGGAGTGAGTAAGGG+GGG - chr5_2:5870708-5870727 Msa0752290:three_prime_UTR 55.0%
GTAAGGGGGGGATAGTGTGT+TGG - chr5_2:5870721-5870740 Msa0752290:three_prime_UTR 55.0%
GGAGTCCTGAGAGTTAGAGG+AGG + chr5_2:5870855-5870874 None:intergenic 55.0%
GGTGTGGGAAACGCAAACCT+TGG + chr5_2:5870876-5870895 None:intergenic 55.0%
GGAGCCATCCGCAAAGAAGA+AGG + chr5_2:5870897-5870916 None:intergenic 55.0%
GCGGAAGTAACTGTTCGGAG+TGG + chr5_2:5870918-5870937 None:intergenic 55.0%
!! CGGTGGCGGAAGTAACTGTT+CGG + chr5_2:5870923-5870942 None:intergenic 55.0%
GCTTGGGTTCGGGAAATCTC+GGG + chr5_2:5871035-5871054 None:intergenic 55.0%
GGCTTGGGTTCGGGAAATCT+CGG + chr5_2:5871036-5871055 None:intergenic 55.0%
TGCTCTTGAGGGCTTGGGTT+CGG + chr5_2:5871046-5871065 None:intergenic 55.0%
!! CCCAAGCCCTCAAGAGCATT+TGG - chr5_2:5871048-5871067 Msa0752290:CDS 55.0%
CCCAAATGCTCTTGAGGGCT+TGG + chr5_2:5871052-5871071 None:intergenic 55.0%
GTGGGCCCAAATGCTCTTGA+GGG + chr5_2:5871057-5871076 None:intergenic 55.0%
TGTGGGCCCAAATGCTCTTG+AGG + chr5_2:5871058-5871077 None:intergenic 55.0%
TGATGGCCAGACAGACAGAC+AGG + chr5_2:5871586-5871605 None:intergenic 55.0%
TGAGCGGAGTGAGTAAGGGG+GGG - chr5_2:5870709-5870728 Msa0752290:three_prime_UTR 60.0%
! ATTTTGCCTCCGGTGGGTGG+AGG + chr5_2:5870954-5870973 None:intergenic 60.0%
! CGAATTTTGCCTCCGGTGGG+TGG + chr5_2:5870957-5870976 None:intergenic 60.0%
! CCGCGAATTTTGCCTCCGGT+GGG + chr5_2:5870960-5870979 None:intergenic 60.0%
CCCACCGGAGGCAAAATTCG+CGG - chr5_2:5870957-5870976 Msa0752290:three_prime_UTR 60.0%
! ACCGCGAATTTTGCCTCCGG+TGG + chr5_2:5870961-5870980 None:intergenic 60.0%
GACGAGGTCTTGCATCTCGG+GGG + chr5_2:5871006-5871025 None:intergenic 60.0%
CGACGAGGTCTTGCATCTCG+GGG + chr5_2:5871007-5871026 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+GGG + chr5_2:5871008-5871027 None:intergenic 60.0%
CCCGAGATGCAAGACCTCGT+CGG - chr5_2:5871005-5871024 Msa0752290:exon 60.0%
GCCGACGAGGTCTTGCATCT+CGG + chr5_2:5871009-5871028 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG + chr5_2:5871022-5871041 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG + chr5_2:5871031-5871050 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG + chr5_2:5871045-5871064 None:intergenic 60.0%
TGAGCGGAGTGAGTAAGGGG+GGG - chr5_2:5870709-5870728 Msa0752290:three_prime_UTR 60.0%
! ATTTTGCCTCCGGTGGGTGG+AGG + chr5_2:5870954-5870973 None:intergenic 60.0%
! CGAATTTTGCCTCCGGTGGG+TGG + chr5_2:5870957-5870976 None:intergenic 60.0%
! CCGCGAATTTTGCCTCCGGT+GGG + chr5_2:5870960-5870979 None:intergenic 60.0%
CCCACCGGAGGCAAAATTCG+CGG - chr5_2:5870957-5870976 Msa0752290:three_prime_UTR 60.0%
! ACCGCGAATTTTGCCTCCGG+TGG + chr5_2:5870961-5870980 None:intergenic 60.0%
GACGAGGTCTTGCATCTCGG+GGG + chr5_2:5871006-5871025 None:intergenic 60.0%
CGACGAGGTCTTGCATCTCG+GGG + chr5_2:5871007-5871026 None:intergenic 60.0%
CCGACGAGGTCTTGCATCTC+GGG + chr5_2:5871008-5871027 None:intergenic 60.0%
CCCGAGATGCAAGACCTCGT+CGG - chr5_2:5871005-5871024 Msa0752290:exon 60.0%
GCCGACGAGGTCTTGCATCT+CGG + chr5_2:5871009-5871028 None:intergenic 60.0%
!! AAATCTCGGGTTGGCCGACG+AGG + chr5_2:5871022-5871041 None:intergenic 60.0%
GGGTTCGGGAAATCTCGGGT+TGG + chr5_2:5871031-5871050 None:intergenic 60.0%
GCTCTTGAGGGCTTGGGTTC+GGG + chr5_2:5871045-5871064 None:intergenic 60.0%
TGGAGGCTGAGAGACGGTGG+CGG + chr5_2:5870937-5870956 None:intergenic 65.0%
GGTGGGTGGAGGCTGAGAGA+CGG + chr5_2:5870943-5870962 None:intergenic 65.0%
GTCTCTCAGCCTCCACCCAC+CGG - chr5_2:5870942-5870961 Msa0752290:three_prime_UTR 65.0%
TGGAGGCTGAGAGACGGTGG+CGG + chr5_2:5870937-5870956 None:intergenic 65.0%
GGTGGGTGGAGGCTGAGAGA+CGG + chr5_2:5870943-5870962 None:intergenic 65.0%
GTCTCTCAGCCTCCACCCAC+CGG - chr5_2:5870942-5870961 Msa0752290:three_prime_UTR 65.0%
GGGTGGAGGCTGAGAGACGG+TGG + chr5_2:5870940-5870959 None:intergenic 70.0%
TCTCAGCCTCCACCCACCGG+AGG - chr5_2:5870945-5870964 Msa0752290:three_prime_UTR 70.0%
GGGTGGAGGCTGAGAGACGG+TGG + chr5_2:5870940-5870959 None:intergenic 70.0%
TCTCAGCCTCCACCCACCGG+AGG - chr5_2:5870945-5870964 Msa0752290:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 5870697 5872421 5870697 ID=Msa0752290;Name=Msa0752290
chr5_2 mRNA 5870697 5872421 5870697 ID=Msa0752290-mRNA-1;Parent=Msa0752290;Name=Msa0752290-mRNA-1;_AED=0.00;_eAED=0.00;_QI=116|1|1|1|1|1|2|311|134
chr5_2 exon 5870697 5871127 5870697 ID=Msa0752290-mRNA-1:exon:2440;Parent=Msa0752290-mRNA-1
chr5_2 exon 5872021 5872421 5872021 ID=Msa0752290-mRNA-1:exon:2439;Parent=Msa0752290-mRNA-1
chr5_2 five_prime_UTR 5872306 5872421 5872306 ID=Msa0752290-mRNA-1:five_prime_utr;Parent=Msa0752290-mRNA-1
chr5_2 CDS 5872021 5872305 5872021 ID=Msa0752290-mRNA-1:cds;Parent=Msa0752290-mRNA-1
chr5_2 CDS 5871008 5871127 5871008 ID=Msa0752290-mRNA-1:cds;Parent=Msa0752290-mRNA-1
chr5_2 three_prime_UTR 5870697 5871007 5870697 ID=Msa0752290-mRNA-1:three_prime_utr;Parent=Msa0752290-mRNA-1
Gene Sequence

>Msa0752290

ATGGCGGTTTCAATGGCTACCGGACTATTATTATCATCTCCTCCTCTAACTCTCAGGACTCCAAGGTTTGCGTTTCCCACACCTTCTTCTTTGCGGATGGCTCCACTCCGAACAGTTACTTCCGCCACCGTCTCTCAGCCTCCACCCACCGGAGGCAAAATTCGCGGTATTATGAAACCTAAAAAAATCTCCCCCGAGATGCAAGACCTCGTCGGCCAACCCGAGATTTCCCGAACCCAAGCCCTCAAGAGCATTTGGGCCCACATTAAGGAACACAATCTTCAGAACCCTGAGAAAAAGAGGCTTATTCGCTGTGATGAGAAACTGAAGAAGGTATTTGCAGGGAGAGATGAAGTTGATATGCTTGAGATTGCTGGCTTGATTAGCCCTCACTTCCTTAATTGA

Protein sequence

>Msa0752290

MAVSMATGLLLSSPPLTLRTPRFAFPTPSSLRMAPLRTVTSATVSQPPPTGGKIRGIMKPKKISPEMQDLVGQPEISRTQALKSIWAHIKEHNLQNPEKKRLIRCDEKLKKVFAGRDEVDMLEIAGLISPHFLN*