AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1299130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299130 MtrunA17_Chr4g0059471 95.203 271 13 0 1 271 1 271 0.0 544
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1299130 AT5G50110.1 65.116 258 88 1 14 271 37 292 6.86e-124 355
Msa1299130 AT5G50110.2 69.231 208 64 0 64 271 1 208 8.71e-107 308

Find 119 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGATGAATTTGGTCTTTC+TGG 0.146446 8_3:-60157670 None:intergenic
AACTGTTGCTAGGGGTATTT+TGG 0.162854 8_3:+60157390 Msa1299130:five_prime_UTR
ATCATACTACTCGTATAATT+AGG 0.186329 8_3:+60162849 Msa1299130:three_prime_UTR
TGAAAACGCCATCAAGAAAA+TGG 0.236105 8_3:+60161031 Msa1299130:CDS
GACAGAGTGTTGTATATTTC+CGG 0.248095 8_3:-60157598 None:intergenic
GTCTACCGTTGGTTCGTGTT+GGG 0.257709 8_3:+60159331 Msa1299130:CDS
TTTACTTGTTATTATTATCT+TGG 0.274054 8_3:+60162680 Msa1299130:three_prime_UTR
TATGATTTACTTTGAGCCTT+TGG 0.299360 8_3:+60162508 Msa1299130:three_prime_UTR
CCTGTGATTTATTATTATTA+AGG 0.311287 8_3:+60162786 Msa1299130:three_prime_UTR
GGTCTTTCTGGCGAGAGGTT+AGG 0.317501 8_3:-60157658 None:intergenic
GGAACTGGTGCAGGTCTTCC+TGG 0.323742 8_3:+60157943 Msa1299130:CDS
GAGCACGTTGTGGATGTTAT+CGG 0.331291 8_3:+60158633 Msa1299130:CDS
ATGGGCGCAGGACAGAGTTT+GGG 0.336255 8_3:+60158757 Msa1299130:intron
GTTGCAGAGACGAGAATATT+AGG 0.336399 8_3:+60158829 Msa1299130:CDS
ACGAGGGAACCATTCTTTCT+TGG 0.344725 8_3:+60157414 Msa1299130:five_prime_UTR
TCATACTACTCGTATAATTA+GGG 0.360734 8_3:+60162850 Msa1299130:three_prime_UTR
TCTTACAATGGTTCTTTAGT+TGG 0.360950 8_3:-60162080 None:intergenic
TATAGGACCAAAAGGACTTT+TGG 0.361833 8_3:+60162475 Msa1299130:three_prime_UTR
GTAATCACCAAAAGTCCTTT+TGG 0.369666 8_3:-60162482 None:intergenic
GTCTTTCTGGCGAGAGGTTA+GGG 0.371857 8_3:-60157657 None:intergenic
CTGTGATTTATTATTATTAA+GGG 0.380875 8_3:+60162787 Msa1299130:three_prime_UTR
TTTGAGCACTGATATGATCT+TGG 0.381044 8_3:-60163011 None:intergenic
AGTTGGTGTCCCAGGAAAAC+GGG 0.388602 8_3:-60162063 None:intergenic
ACAGCAGTACGCTGACCATA+TGG 0.393838 8_3:-60162002 None:intergenic
GAGAGGTTAGGGTTACGAAA+TGG 0.402321 8_3:-60157646 None:intergenic
TCCAACGTTCAAATTGTAAG+AGG 0.404108 8_3:+60158660 Msa1299130:CDS
TGTCTACCGTTGGTTCGTGT+TGG 0.406933 8_3:+60159330 Msa1299130:CDS
CCTATCCTTCACTCAGGCTT+AGG 0.414730 8_3:-60163043 None:intergenic
AGAGGTTAGGGTTACGAAAT+GGG 0.416350 8_3:-60157645 None:intergenic
TCCTATATGAGCAGAAAATC+AGG 0.418245 8_3:-60162209 None:intergenic
CTCATATCATATCTTTCAGT+TGG 0.424558 8_3:+60162894 Msa1299130:three_prime_UTR
TGTCAACGTAGAGATGAATT+TGG 0.424734 8_3:-60157679 None:intergenic
CATTCGTGATTGTCAATATG+TGG 0.427334 8_3:+60162922 Msa1299130:three_prime_UTR
ACGTTGACACACTTCTTCAA+TGG 0.428268 8_3:+60157693 Msa1299130:CDS
TAAAGAAGTGAATGAAGTTA+TGG 0.428995 8_3:+60157819 Msa1299130:CDS
AAGATGGATGCTCACTCTAT+TGG 0.433034 8_3:+60162099 Msa1299130:exon
GAAAACGGGGATATTTCATT+GGG 0.441381 8_3:-60162049 None:intergenic
CGCGGTGGGTTGAAGTGAAA+TGG 0.442952 8_3:+60157517 Msa1299130:exon
GGAAAACGGGGATATTTCAT+TGG 0.445243 8_3:-60162050 None:intergenic
GATAATTGCCATCACACATA+TGG 0.451791 8_3:-60162619 None:intergenic
TACCTCAGGATCGTGACCTT+TGG 0.461899 8_3:-60159370 None:intergenic
GTGGAATCGCAAAGCCCATA+TGG 0.466111 8_3:+60161987 Msa1299130:intron
TTCTTATATATAGGACCAAA+AGG 0.468496 8_3:+60162467 Msa1299130:three_prime_UTR
AACAAGTAAACAAAGATAGA+AGG 0.470691 8_3:-60162667 None:intergenic
CCTAAGCCTGAGTGAAGGAT+AGG 0.473791 8_3:+60163043 Msa1299130:three_prime_UTR
GGTTCTTTAGTTGGTGTCCC+AGG 0.475939 8_3:-60162071 None:intergenic
TAGTTGGTGTCCCAGGAAAA+CGG 0.477831 8_3:-60162064 None:intergenic
TCTTACAATTTGAACGTTGG+AGG 0.479551 8_3:-60158658 None:intergenic
TCTACCGTTGGTTCGTGTTG+GGG 0.489555 8_3:+60159332 Msa1299130:CDS
AAACTCGTTGATGTAGGAAC+TGG 0.493161 8_3:+60157928 Msa1299130:CDS
TTGTATATTTCCGGTGCGTA+AGG 0.494565 8_3:-60157589 None:intergenic
CTGATATAATTATCGCTCAA+TGG 0.494805 8_3:-60157877 None:intergenic
TTGATTTGTTCTCAACTCCC+TGG 0.495831 8_3:+60162739 Msa1299130:three_prime_UTR
AGCTGAGTATTGTCTACCGT+TGG 0.498156 8_3:+60159320 Msa1299130:intron
GGTCGCTCGTGCACATCATA+CGG 0.501619 8_3:-60162188 None:intergenic
GAAGCAAAATCCACTACAAA+CGG 0.502222 8_3:+60157448 Msa1299130:five_prime_UTR
AACGAGTTTAATCTTATCGA+TGG 0.503072 8_3:-60157914 None:intergenic
GAAAACGCCATCAAGAAAAT+GGG 0.504470 8_3:+60161032 Msa1299130:CDS
GAGGTTAGGGTTACGAAATG+GGG 0.509056 8_3:-60157644 None:intergenic
TCTCGTCTCTGCAACTGCCC+TGG 0.513302 8_3:-60158821 None:intergenic
CAAGATATGCATAATCAGCC+AGG 0.515323 8_3:-60162757 None:intergenic
AAGATTAAACTCGTTGATGT+AGG 0.520131 8_3:+60157922 Msa1299130:CDS
GTGACAATTAACTGTTGCTA+GGG 0.521376 8_3:+60157381 Msa1299130:five_prime_UTR
CAACAGTAGTTGAGTGCAGC+GGG 0.521542 8_3:+60157480 Msa1299130:five_prime_UTR
TCCTCTTACAATTTGAACGT+TGG 0.523694 8_3:-60158661 None:intergenic
AATTTGACATAGCAGTAGCC+AGG 0.525927 8_3:+60158803 Msa1299130:CDS
TAGACTGACTTTGAAACTCA+TGG 0.526077 8_3:+60162813 Msa1299130:three_prime_UTR
CTACCGTTGGTTCGTGTTGG+GGG 0.530014 8_3:+60159333 Msa1299130:CDS
ATTCGTGATTGTCAATATGT+GGG 0.532915 8_3:+60162923 Msa1299130:three_prime_UTR
ACTAAAGAACCATTGTAAGA+TGG 0.535093 8_3:+60162083 Msa1299130:exon
AGTGACAATTAACTGTTGCT+AGG 0.536079 8_3:+60157380 None:intergenic
CGGGGATATTTCATTGGGGT+GGG 0.541919 8_3:-60162044 None:intergenic
TTGAACCATTGTCTGAGAGA+AGG 0.544739 8_3:+60162163 Msa1299130:three_prime_UTR
TCATTATTGCAAGTATGCTC+AGG 0.550979 8_3:+60161059 Msa1299130:CDS
TGGGCGCAGGACAGAGTTTG+GGG 0.554614 8_3:+60158758 Msa1299130:intron
ACGGGGATATTTCATTGGGG+TGG 0.555509 8_3:-60162045 None:intergenic
GCAATGGCTAAAACTACTCC+AGG 0.556751 8_3:-60157961 None:intergenic
CGGGTCCTTCTCTCAGACAA+TGG 0.557952 8_3:-60162168 None:intergenic
CTTTGCCCTATCCTTCACTC+AGG 0.558638 8_3:-60163049 None:intergenic
TACTGCTGTCATATGTCTGA+AGG 0.559673 8_3:+60162016 Msa1299130:CDS
CAGCAGTACGCTGACCATAT+GGG 0.560427 8_3:-60162001 None:intergenic
CACACTTCTTCAATGGAACA+AGG 0.562214 8_3:+60157700 Msa1299130:CDS
CCTTAATAATAATAAATCAC+AGG 0.562249 8_3:-60162786 None:intergenic
TCTACAAACACCTTACGCAC+CGG 0.562620 8_3:+60157579 Msa1299130:CDS
TATGATCTTGGCTTTCAACA+TGG 0.562656 8_3:-60162999 None:intergenic
ATTTGACATAGCAGTAGCCA+GGG 0.567476 8_3:+60158804 Msa1299130:CDS
GTCGCTCGTGCACATCATAC+GGG 0.588578 8_3:-60162187 None:intergenic
AGGTTCATCAATGTCTCCAA+AGG 0.589384 8_3:-60162524 None:intergenic
ATAACGTGAAAGCGCGCGGT+GGG 0.589452 8_3:+60157503 Msa1299130:five_prime_UTR
GGAGACATTGATGAACCTGA+AGG 0.594216 8_3:+60162529 Msa1299130:three_prime_UTR
CTAAGCCTGAGTGAAGGATA+GGG 0.594321 8_3:+60163044 Msa1299130:three_prime_UTR
CACTTGACCTGGTCTAGCAA+TGG 0.594471 8_3:-60157977 None:intergenic
CACATATTGACAATCACGAA+TGG 0.598174 8_3:-60162921 None:intergenic
AATTTGGTCTTTCTGGCGAG+AGG 0.598274 8_3:-60157663 None:intergenic
GGAATGTTTATTGCTGCCAA+AGG 0.598992 8_3:+60159354 Msa1299130:CDS
AGATTGGGATGTAACACTGA+TGG 0.609722 8_3:+60158581 Msa1299130:intron
ATAGGATTGGGTCAGAAGAA+CGG 0.611975 8_3:-60162132 None:intergenic
GTGTTGCTAGCCGTTTGTAG+TGG 0.624500 8_3:-60157458 None:intergenic
CAATGGAGGCAAAATTGCGA+GGG 0.627212 8_3:-60157860 None:intergenic
GTTGATGTAGGAACTGGTGC+AGG 0.629428 8_3:+60157934 Msa1299130:CDS
AATCTCATGTGACAATGACA+AGG 0.631485 8_3:+60162561 Msa1299130:three_prime_UTR
GATAACGTGAAAGCGCGCGG+TGG 0.639703 8_3:+60157502 Msa1299130:five_prime_UTR
AGTTATGGAAAGACACATTG+AGG 0.642256 8_3:+60157834 Msa1299130:CDS
TCAATGGAGGCAAAATTGCG+AGG 0.642917 8_3:-60157861 None:intergenic
ATATAATTATCGCTCAATGG+AGG 0.646223 8_3:-60157874 None:intergenic
TGCCAAAGGTCACGATCCTG+AGG 0.646495 8_3:+60159368 Msa1299130:CDS
AGGTTAGGGTTACGAAATGG+GGG 0.648178 8_3:-60157643 None:intergenic
AATTGTAAGAGGAAGAGCAG+AGG 0.651779 8_3:+60158671 Msa1299130:CDS
AAGATATGCATAATCAGCCA+GGG 0.655520 8_3:-60162756 None:intergenic
TGATGGAGTCTATGAACAAG+CGG 0.655620 8_3:+60158598 Msa1299130:CDS
ATCTCATGTGACAATGACAA+GGG 0.658652 8_3:+60162562 Msa1299130:three_prime_UTR
TATGATATGAGAGTAAACGT+TGG 0.663209 8_3:-60162882 None:intergenic
AAGAGCCTAAGCCTGAGTGA+AGG 0.665069 8_3:+60163038 Msa1299130:three_prime_UTR
GTTGGTGTCCCAGGAAAACG+GGG 0.669785 8_3:-60162062 None:intergenic
GTACGTTGCCATATGTGTGA+TGG 0.670690 8_3:+60162611 Msa1299130:three_prime_UTR
AGTGAGCATCCATCTTACAA+TGG 0.672140 8_3:-60162092 None:intergenic
ACAACAGTAGTTGAGTGCAG+CGG 0.682302 8_3:+60157479 Msa1299130:five_prime_UTR
TGACAATTAACTGTTGCTAG+GGG 0.707132 8_3:+60157382 Msa1299130:five_prime_UTR
AAAACGGGGATATTTCATTG+GGG 0.753527 8_3:-60162048 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATATAGTTTTTTATTC+AGG - chr8_3:60159741-60159760 None:intergenic 10.0%
!! AATAAATAAACAATAATAAG+AGG - chr8_3:60160526-60160545 None:intergenic 10.0%
!!! TAAAGTACTATTAAATTATC+AGG - chr8_3:60158870-60158889 None:intergenic 15.0%
!!! ATCTTGAATATTTGATAATA+CGG - chr8_3:60158952-60158971 None:intergenic 15.0%
!! AATATTTAGAAAAGAGAAAA+CGG + chr8_3:60159695-60159714 Msa1299130:intron 15.0%
!!! ATAACTGATTTTTAAATTAC+TGG - chr8_3:60159858-60159877 None:intergenic 15.0%
!! TTATTCTTCAATACATATTA+TGG + chr8_3:60160541-60160560 Msa1299130:intron 15.0%
!!! TTATCCATGTTTTTAAAAAT+TGG - chr8_3:60160689-60160708 None:intergenic 15.0%
!!! TTTTTAAAAACATGGATAAA+AGG + chr8_3:60160690-60160709 Msa1299130:intron 15.0%
!! ATATTCAAAAATCTATATGT+TGG - chr8_3:60161284-60161303 None:intergenic 15.0%
!! TTCTTTACTTAAAGAAATTA+AGG - chr8_3:60161608-60161627 None:intergenic 15.0%
!! AACAATTAATTCCTAATTAA+AGG + chr8_3:60161696-60161715 Msa1299130:intron 15.0%
!! AATAGAAATAATCAACATAA+GGG - chr8_3:60161875-60161894 None:intergenic 15.0%
!!! TCAAACTTTTTCTTATATAT+AGG + chr8_3:60162458-60162477 Msa1299130:three_prime_UTR 15.0%
!!! TTTACTTGTTATTATTATCT+TGG + chr8_3:60162680-60162699 Msa1299130:three_prime_UTR 15.0%
!! CTGTGATTTATTATTATTAA+GGG + chr8_3:60162787-60162806 Msa1299130:three_prime_UTR 15.0%
!!! TAAATTTTGATGTGTGATTT+AGG + chr8_3:60158059-60158078 Msa1299130:intron 20.0%
!! AGTTTATGAAAACAGTTTAT+AGG - chr8_3:60158237-60158256 None:intergenic 20.0%
!!! TTATTTTCATAAGTTCTCTA+GGG - chr8_3:60158262-60158281 None:intergenic 20.0%
!! AAATTAAATTGGTCATAATG+TGG - chr8_3:60159083-60159102 None:intergenic 20.0%
!! TTTACTATTTAGTAATGCTT+CGG + chr8_3:60159448-60159467 Msa1299130:intron 20.0%
!!! TTCAAATAAGATTTAAGACT+GGG - chr8_3:60159554-60159573 None:intergenic 20.0%
!!! ATTCAAATAAGATTTAAGAC+TGG - chr8_3:60159555-60159574 None:intergenic 20.0%
!! CAGTAATATATTGTTGAAAA+GGG - chr8_3:60160358-60160377 None:intergenic 20.0%
!!! TAGTAACACAATATTTTTGT+TGG - chr8_3:60160447-60160466 None:intergenic 20.0%
!!! ATGTCCAATTTTTAAAAACA+TGG + chr8_3:60160682-60160701 Msa1299130:intron 20.0%
!!! AATGACATGAAGTTTTATAT+TGG - chr8_3:60160812-60160831 None:intergenic 20.0%
!! TTACACACAAAATTAATAGA+TGG - chr8_3:60160981-60161000 None:intergenic 20.0%
!!! AATTTTGTGTGTAATAAACT+CGG + chr8_3:60160987-60161006 Msa1299130:intron 20.0%
!!! TTTTAGGAATAAAACAAACT+TGG - chr8_3:60161135-60161154 None:intergenic 20.0%
!!! AAGTTTGTTTTATTCCTAAA+AGG + chr8_3:60161134-60161153 Msa1299130:intron 20.0%
!! TATTAAAATCCTATATTTGC+AGG - chr8_3:60161205-60161224 None:intergenic 20.0%
!!! AATTTGCTGTTTTATTTCAT+AGG + chr8_3:60161568-60161587 Msa1299130:intron 20.0%
!! AATATAATCAAAAGTCAAAC+AGG - chr8_3:60161810-60161829 None:intergenic 20.0%
!!! TTTTTAGGAATAGTTAATTC+TGG + chr8_3:60161844-60161863 Msa1299130:intron 20.0%
!! GAATAGAAATAATCAACATA+AGG - chr8_3:60161876-60161895 None:intergenic 20.0%
!! CCTTAATAATAATAAATCAC+AGG - chr8_3:60162789-60162808 None:intergenic 20.0%
!! CCTGTGATTTATTATTATTA+AGG + chr8_3:60162786-60162805 Msa1299130:three_prime_UTR 20.0%
! TAAAGAAGTGAATGAAGTTA+TGG + chr8_3:60157819-60157838 Msa1299130:CDS 25.0%
! AATAACACTTTGGTTACAAA+AGG - chr8_3:60158028-60158047 None:intergenic 25.0%
!! ACAATTTATTTGCAGCTTTT+AGG + chr8_3:60158127-60158146 Msa1299130:intron 25.0%
!!! CTTATTTTCATAAGTTCTCT+AGG - chr8_3:60158263-60158282 None:intergenic 25.0%
!! CAGATTGACTTTATTCTATT+TGG - chr8_3:60158385-60158404 None:intergenic 25.0%
! ATCGATAAACTAATCAAAAC+TGG + chr8_3:60158545-60158564 Msa1299130:intron 25.0%
! ATTCAATGTGTTTCTTGAAA+TGG + chr8_3:60158732-60158751 Msa1299130:intron 25.0%
!! TAAATACTTAACTTGATCCT+TGG + chr8_3:60158898-60158917 Msa1299130:intron 25.0%
!! TTGAATATTTGATAATACGG+AGG - chr8_3:60158949-60158968 None:intergenic 25.0%
!!! TGCAATTTTAAGTATCATTG+TGG - chr8_3:60158976-60158995 None:intergenic 25.0%
! GGACTAGAATGAAATTAAAT+TGG - chr8_3:60159094-60159113 None:intergenic 25.0%
! AAATTAGTCCTTTGAATTGT+AGG - chr8_3:60159219-60159238 None:intergenic 25.0%
!! AAGTGTTATTATGGAAGTAA+AGG - chr8_3:60159253-60159272 None:intergenic 25.0%
!! AATAACCACAAGTGTTATTA+TGG - chr8_3:60159262-60159281 None:intergenic 25.0%
!!! TTGTGGTTATTTTCTTACTA+TGG + chr8_3:60159271-60159290 Msa1299130:intron 25.0%
! ATAAGATAAGAATCAACACT+TGG - chr8_3:60159421-60159440 None:intergenic 25.0%
!!! TTTTTTAACCACAAGAATTG+TGG + chr8_3:60159509-60159528 Msa1299130:intron 25.0%
!! TTTTTAACCACAAGAATTGT+GGG + chr8_3:60159510-60159529 Msa1299130:intron 25.0%
! ATATGAAAATTAGATCAGAC+TGG + chr8_3:60159763-60159782 Msa1299130:intron 25.0%
!! TCAACAGAGAAATTGTATTT+TGG - chr8_3:60159960-60159979 None:intergenic 25.0%
! TTCAATTGAAAAAACAAGAG+AGG - chr8_3:60160039-60160058 None:intergenic 25.0%
!!! ATTCTCTCTTTCAAGTTTTA+AGG + chr8_3:60160079-60160098 Msa1299130:intron 25.0%
!!! TTCTCTCTTTCAAGTTTTAA+GGG + chr8_3:60160080-60160099 Msa1299130:intron 25.0%
! AACAAGTTAACAACTTTAAG+TGG - chr8_3:60160250-60160269 None:intergenic 25.0%
! CCAGTAATATATTGTTGAAA+AGG - chr8_3:60160359-60160378 None:intergenic 25.0%
!! CCTTTTCAACAATATATTAC+TGG + chr8_3:60160356-60160375 Msa1299130:intron 25.0%
! TTTGTTGGTCATATTTATGT+GGG - chr8_3:60160432-60160451 None:intergenic 25.0%
!! TTTTGTTGGTCATATTTATG+TGG - chr8_3:60160433-60160452 None:intergenic 25.0%
!! CATATTATGGTTCTTTTAAG+TGG + chr8_3:60160554-60160573 Msa1299130:intron 25.0%
! AAATTGGACATGAAATTATC+CGG - chr8_3:60160673-60160692 None:intergenic 25.0%
! CACACTATCATTTAATGATT+TGG + chr8_3:60160864-60160883 Msa1299130:intron 25.0%
!! ACTATCATTTAATGATTTGG+TGG + chr8_3:60160867-60160886 Msa1299130:intron 25.0%
!!! ATAGCATTTTGATTCCTTTT+AGG - chr8_3:60161151-60161170 None:intergenic 25.0%
!! AATATATATTTTCAGTGACG+TGG + chr8_3:60161221-60161240 Msa1299130:intron 25.0%
!!! TTTTTTACTCAAAAAATGCG+AGG + chr8_3:60161406-60161425 Msa1299130:intron 25.0%
!! TTTTTACTCAAAAAATGCGA+GGG + chr8_3:60161407-60161426 Msa1299130:intron 25.0%
!!! ACTGATAGTTTTAGTTGAAA+TGG + chr8_3:60161491-60161510 Msa1299130:intron 25.0%
!! ATAGAAGATAACTTTTTGTG+AGG + chr8_3:60161528-60161547 Msa1299130:intron 25.0%
! TTATACAAGACAATGGATAT+AGG - chr8_3:60161640-60161659 None:intergenic 25.0%
! AATTTCGTTATACAAGACAA+TGG - chr8_3:60161647-60161666 None:intergenic 25.0%
! TTGTATAACGAAATTCTAGT+TGG + chr8_3:60161652-60161671 Msa1299130:intron 25.0%
! ATAGTGAAATTTAGTCACTT+AGG - chr8_3:60161758-60161777 None:intergenic 25.0%
! TCTGTTTATTGTTTCATCAT+CGG + chr8_3:60161915-60161934 Msa1299130:intron 25.0%
! TCAAAAAAAGTGATAGGATT+GGG - chr8_3:60162147-60162166 None:intergenic 25.0%
! TTCAAAAAAAGTGATAGGAT+TGG - chr8_3:60162148-60162167 None:intergenic 25.0%
! AATGGTTCAAAAAAAGTGAT+AGG - chr8_3:60162153-60162172 None:intergenic 25.0%
!!! AGTGTTGTTTTTTGAATAGT+AGG + chr8_3:60162262-60162281 Msa1299130:three_prime_UTR 25.0%
!!! GTGTTGTTTTTTGAATAGTA+GGG + chr8_3:60162263-60162282 Msa1299130:three_prime_UTR 25.0%
!!! TGTTGTTTTTTGAATAGTAG+GGG + chr8_3:60162264-60162283 Msa1299130:three_prime_UTR 25.0%
! TTCTTATATATAGGACCAAA+AGG + chr8_3:60162467-60162486 Msa1299130:three_prime_UTR 25.0%
!!! AGCTTTTAAAACATACTTCT+AGG - chr8_3:60162644-60162663 None:intergenic 25.0%
!!! TAGAAGTATGTTTTAAAAGC+TGG + chr8_3:60162643-60162662 Msa1299130:three_prime_UTR 25.0%
! AACAAGTAAACAAAGATAGA+AGG - chr8_3:60162670-60162689 None:intergenic 25.0%
! ATCATACTACTCGTATAATT+AGG + chr8_3:60162849-60162868 Msa1299130:three_prime_UTR 25.0%
! TCATACTACTCGTATAATTA+GGG + chr8_3:60162850-60162869 Msa1299130:three_prime_UTR 25.0%
! TTTTTCACTCCAAGAAAGAA+TGG - chr8_3:60157426-60157445 None:intergenic 30.0%
!! TCAATAACTTGCAGTTTTCT+CGG + chr8_3:60157549-60157568 Msa1299130:CDS 30.0%
ATATAATTATCGCTCAATGG+AGG - chr8_3:60157877-60157896 None:intergenic 30.0%
CTGATATAATTATCGCTCAA+TGG - chr8_3:60157880-60157899 None:intergenic 30.0%
AACGAGTTTAATCTTATCGA+TGG - chr8_3:60157917-60157936 None:intergenic 30.0%
AAGATTAAACTCGTTGATGT+AGG + chr8_3:60157922-60157941 Msa1299130:CDS 30.0%
TAAATGAAATTCACTTGACC+TGG - chr8_3:60157991-60158010 None:intergenic 30.0%
AGCACTTATGTATACAAACA+GGG - chr8_3:60158085-60158104 None:intergenic 30.0%
AAGCACTTATGTATACAAAC+AGG - chr8_3:60158086-60158105 None:intergenic 30.0%
TGACTTTATTCTATTTGGAC+TGG - chr8_3:60158380-60158399 None:intergenic 30.0%
AACAAACATAAGCACTTATG+AGG - chr8_3:60158519-60158538 None:intergenic 30.0%
TGTGTTTCTTGAAATGGTAA+TGG + chr8_3:60158738-60158757 Msa1299130:intron 30.0%
GTGTTTCTTGAAATGGTAAT+GGG + chr8_3:60158739-60158758 Msa1299130:intron 30.0%
ACGAGAATATTAGGTACTAT+TGG + chr8_3:60158838-60158857 Msa1299130:intron 30.0%
CGAGAATATTAGGTACTATT+GGG + chr8_3:60158839-60158858 Msa1299130:intron 30.0%
GAGAATATTAGGTACTATTG+GGG + chr8_3:60158840-60158859 Msa1299130:intron 30.0%
TAATACCACAATCAAACAGA+GGG - chr8_3:60159018-60159037 None:intergenic 30.0%
TTAATACCACAATCAAACAG+AGG - chr8_3:60159019-60159038 None:intergenic 30.0%
TCCTATTGTTGGAATTTGAA+GGG - chr8_3:60159115-60159134 None:intergenic 30.0%
ATCCTATTGTTGGAATTTGA+AGG - chr8_3:60159116-60159135 None:intergenic 30.0%
AATCAAATGCATCCTATTGT+TGG - chr8_3:60159126-60159145 None:intergenic 30.0%
GATTAAAACCTTGAAATTCG+AGG + chr8_3:60159142-60159161 Msa1299130:intron 30.0%
! TCTGGAATATCGATAATTTG+AGG + chr8_3:60159176-60159195 Msa1299130:intron 30.0%
CTGGAATATCGATAATTTGA+GGG + chr8_3:60159177-60159196 Msa1299130:intron 30.0%
TACTTCCATAATAACACTTG+TGG + chr8_3:60159254-60159273 Msa1299130:intron 30.0%
!! TGTTGATTCTTATCTTATGC+TGG + chr8_3:60159423-60159442 Msa1299130:intron 30.0%
TAGAAAAGAGAAAACGGAAT+AGG + chr8_3:60159701-60159720 Msa1299130:intron 30.0%
AAACTGTGAACCATTTCATT+GGG + chr8_3:60159802-60159821 Msa1299130:intron 30.0%
GCTTTAACTAGTCATTAAAC+AGG - chr8_3:60159928-60159947 None:intergenic 30.0%
GTATTGAACCATGGTTATTA+AGG + chr8_3:60159980-60159999 Msa1299130:intron 30.0%
!!! TCTCTCTTTCAAGTTTTAAG+GGG + chr8_3:60160081-60160100 Msa1299130:intron 30.0%
!!! AGTTGTTTGTTTTCTAGCTA+AGG + chr8_3:60160120-60160139 Msa1299130:intron 30.0%
! AAGGTGCAATTTTCAATTGA+AGG + chr8_3:60160139-60160158 Msa1299130:intron 30.0%
GATGATTTGACTCTTATCAA+TGG + chr8_3:60160193-60160212 Msa1299130:intron 30.0%
AACAACTTTAAGTGGAACAA+TGG - chr8_3:60160242-60160261 None:intergenic 30.0%
GTTATAATTGTGTGTGTTAG+AGG - chr8_3:60160637-60160656 None:intergenic 30.0%
!! TTGGGTGTGTATTTTATTTG+AGG - chr8_3:60160750-60160769 None:intergenic 30.0%
!! CATGAAGTTTTATATTGGCA+CGG - chr8_3:60160807-60160826 None:intergenic 30.0%
GTTCACAATTTCAAATCTGT+GGG - chr8_3:60160959-60160978 None:intergenic 30.0%
ATATAGCAAGAGTTAAGTTC+CGG - chr8_3:60161101-60161120 None:intergenic 30.0%
ATTTGTGTTCCTGCAAATAT+AGG + chr8_3:60161193-60161212 Msa1299130:intron 30.0%
AACCTTGAAAACTGATGTTA+CGG - chr8_3:60161325-60161344 None:intergenic 30.0%
TAGTATGTACCTTGATCAAA+AGG - chr8_3:60161460-60161479 None:intergenic 30.0%
TGCTAGAACTTCCTTTAATT+AGG - chr8_3:60161710-60161729 None:intergenic 30.0%
GCGTAAGAAATGTGTATTTA+CGG - chr8_3:60161734-60161753 None:intergenic 30.0%
AATCAAAAGTCAAACAGGTA+GGG - chr8_3:60161805-60161824 None:intergenic 30.0%
TAATCAAAAGTCAAACAGGT+AGG - chr8_3:60161806-60161825 None:intergenic 30.0%
TTGATTATATTTGTCTTCCC+TGG + chr8_3:60161819-60161838 Msa1299130:intron 30.0%
AACTATTCCTAAAAATGCCA+GGG - chr8_3:60161839-60161858 None:intergenic 30.0%
TAACTATTCCTAAAAATGCC+AGG - chr8_3:60161840-60161859 None:intergenic 30.0%
AGAAATGAAACACAAACTCT+TGG - chr8_3:60161898-60161917 None:intergenic 30.0%
TCTTACAATGGTTCTTTAGT+TGG - chr8_3:60162083-60162102 None:intergenic 30.0%
ACTAAAGAACCATTGTAAGA+TGG + chr8_3:60162083-60162102 Msa1299130:exon 30.0%
TATGATTTACTTTGAGCCTT+TGG + chr8_3:60162508-60162527 Msa1299130:three_prime_UTR 30.0%
TATGATATGAGAGTAAACGT+TGG - chr8_3:60162885-60162904 None:intergenic 30.0%
CTCATATCATATCTTTCAGT+TGG + chr8_3:60162894-60162913 Msa1299130:three_prime_UTR 30.0%
ATTCGTGATTGTCAATATGT+GGG + chr8_3:60162923-60162942 Msa1299130:three_prime_UTR 30.0%
GTGACAATTAACTGTTGCTA+GGG + chr8_3:60157381-60157400 Msa1299130:five_prime_UTR 35.0%
TGACAATTAACTGTTGCTAG+GGG + chr8_3:60157382-60157401 Msa1299130:five_prime_UTR 35.0%
GAAGCAAAATCCACTACAAA+CGG + chr8_3:60157448-60157467 Msa1299130:five_prime_UTR 35.0%
!! GACAGAGTGTTGTATATTTC+CGG - chr8_3:60157601-60157620 None:intergenic 35.0%
! AGAGATGAATTTGGTCTTTC+TGG - chr8_3:60157673-60157692 None:intergenic 35.0%
TGTCAACGTAGAGATGAATT+TGG - chr8_3:60157682-60157701 None:intergenic 35.0%
AGTTATGGAAAGACACATTG+AGG + chr8_3:60157834-60157853 Msa1299130:CDS 35.0%
AACACTTTGGTTACAAAAGG+CGG - chr8_3:60158025-60158044 None:intergenic 35.0%
! ACCAAAGTGTTATTGTCAGA+TGG + chr8_3:60158034-60158053 Msa1299130:intron 35.0%
TCCATCTGACAATAACACTT+TGG - chr8_3:60158038-60158057 None:intergenic 35.0%
TGGTCCTTAATGCAATAGAT+TGG + chr8_3:60158565-60158584 Msa1299130:intron 35.0%
GGTCCTTAATGCAATAGATT+GGG + chr8_3:60158566-60158585 Msa1299130:intron 35.0%
CATCCCAATCTATTGCATTA+AGG - chr8_3:60158572-60158591 None:intergenic 35.0%
TCTTACAATTTGAACGTTGG+AGG - chr8_3:60158661-60158680 None:intergenic 35.0%
TCCAACGTTCAAATTGTAAG+AGG + chr8_3:60158660-60158679 Msa1299130:CDS 35.0%
TCCTCTTACAATTTGAACGT+TGG - chr8_3:60158664-60158683 None:intergenic 35.0%
ACTTGATCCTTGGAATTGTA+AGG + chr8_3:60158908-60158927 Msa1299130:intron 35.0%
GATACAACCTTACAATTCCA+AGG - chr8_3:60158918-60158937 None:intergenic 35.0%
TCCCTTCAAATTCCAACAAT+AGG + chr8_3:60159111-60159130 Msa1299130:intron 35.0%
ACTATTTAGTAATGCTTCGG+TGG + chr8_3:60159451-60159470 Msa1299130:intron 35.0%
CAAATTACCCACAATTCTTG+TGG - chr8_3:60159520-60159539 None:intergenic 35.0%
! CTAGTGATTTTCTCAGTGTA+AGG - chr8_3:60159592-60159611 None:intergenic 35.0%
! ATTCTTGTAGAGAGTATGCA+AGG + chr8_3:60159667-60159686 Msa1299130:intron 35.0%
CAAACTGTGAACCATTTCAT+TGG + chr8_3:60159801-60159820 Msa1299130:intron 35.0%
! GCAAACTGTCTTGATTTTAG+TGG + chr8_3:60159896-60159915 Msa1299130:intron 35.0%
TTGAACCATGGTTATTAAGG+AGG + chr8_3:60159983-60160002 Msa1299130:intron 35.0%
TGAATCCTCCTTAATAACCA+TGG - chr8_3:60159991-60160010 None:intergenic 35.0%
TTCAATTGAAGGAACAAGCA+AGG + chr8_3:60160150-60160169 Msa1299130:intron 35.0%
!!! TGAATTCATGTGTCGACTTT+TGG + chr8_3:60160381-60160400 Msa1299130:intron 35.0%
! TTTGGAATGAATCCCACATA+TGG + chr8_3:60160399-60160418 Msa1299130:intron 35.0%
CACACACAATTATAACCTAC+TGG + chr8_3:60160641-60160660 Msa1299130:intron 35.0%
TGCTTTCCTATACTTAGGTT+GGG - chr8_3:60160768-60160787 None:intergenic 35.0%
GGTTCACAATTTCAAATCTG+TGG - chr8_3:60160960-60160979 None:intergenic 35.0%
TGTGTGTAATAAACTCGGAT+AGG + chr8_3:60160992-60161011 Msa1299130:intron 35.0%
TGAAAACGCCATCAAGAAAA+TGG + chr8_3:60161031-60161050 Msa1299130:CDS 35.0%
GAAAACGCCATCAAGAAAAT+GGG + chr8_3:60161032-60161051 Msa1299130:CDS 35.0%
TCATTATTGCAAGTATGCTC+AGG + chr8_3:60161059-60161078 Msa1299130:CDS 35.0%
TATAGCAAGAGTTAAGTTCC+GGG - chr8_3:60161100-60161119 None:intergenic 35.0%
GTTAGAAGAACTATCTGACT+GGG - chr8_3:60161262-60161281 None:intergenic 35.0%
ATTCGAACTAAGAGAATGAG+GGG - chr8_3:60161359-60161378 None:intergenic 35.0%
CATTCGAACTAAGAGAATGA+GGG - chr8_3:60161360-60161379 None:intergenic 35.0%
TCATTCGAACTAAGAGAATG+AGG - chr8_3:60161361-60161380 None:intergenic 35.0%
TTCTCTTAGTTCGAATGATC+TGG + chr8_3:60161363-60161382 Msa1299130:intron 35.0%
TATCTTCTATCATTCAGCCT+CGG - chr8_3:60161518-60161537 None:intergenic 35.0%
GTTTATTGTTTCATCATCGG+TGG + chr8_3:60161918-60161937 Msa1299130:intron 35.0%
AAAACGGGGATATTTCATTG+GGG - chr8_3:60162051-60162070 None:intergenic 35.0%
GAAAACGGGGATATTTCATT+GGG - chr8_3:60162052-60162071 None:intergenic 35.0%
! ACCTGATTTTCTGCTCATAT+AGG + chr8_3:60162208-60162227 Msa1299130:three_prime_UTR 35.0%
TCCTATATGAGCAGAAAATC+AGG - chr8_3:60162212-60162231 None:intergenic 35.0%
!!! TCTCGTCTAAGTTTTGAAGT+AGG - chr8_3:60162420-60162439 None:intergenic 35.0%
! TATAGGACCAAAAGGACTTT+TGG + chr8_3:60162475-60162494 Msa1299130:three_prime_UTR 35.0%
! GTAATCACCAAAAGTCCTTT+TGG - chr8_3:60162485-60162504 None:intergenic 35.0%
AATCTCATGTGACAATGACA+AGG + chr8_3:60162561-60162580 Msa1299130:three_prime_UTR 35.0%
ATCTCATGTGACAATGACAA+GGG + chr8_3:60162562-60162581 Msa1299130:three_prime_UTR 35.0%
GATAATTGCCATCACACATA+TGG - chr8_3:60162622-60162641 None:intergenic 35.0%
AAGATATGCATAATCAGCCA+GGG - chr8_3:60162759-60162778 None:intergenic 35.0%
!! TAGACTGACTTTGAAACTCA+TGG + chr8_3:60162813-60162832 Msa1299130:three_prime_UTR 35.0%
CACATATTGACAATCACGAA+TGG - chr8_3:60162924-60162943 None:intergenic 35.0%
CATTCGTGATTGTCAATATG+TGG + chr8_3:60162922-60162941 Msa1299130:three_prime_UTR 35.0%
! TATGATCTTGGCTTTCAACA+TGG - chr8_3:60163002-60163021 None:intergenic 35.0%
!! TTTGAGCACTGATATGATCT+TGG - chr8_3:60163014-60163033 None:intergenic 35.0%
!!! AACTGTTGCTAGGGGTATTT+TGG + chr8_3:60157390-60157409 Msa1299130:five_prime_UTR 40.0%
!! ATAACTTGCAGTTTTCTCGG+TGG + chr8_3:60157552-60157571 Msa1299130:CDS 40.0%
TTGTATATTTCCGGTGCGTA+AGG - chr8_3:60157592-60157611 None:intergenic 40.0%
AGAGGTTAGGGTTACGAAAT+GGG - chr8_3:60157648-60157667 None:intergenic 40.0%
ACGTTGACACACTTCTTCAA+TGG + chr8_3:60157693-60157712 Msa1299130:CDS 40.0%
CACACTTCTTCAATGGAACA+AGG + chr8_3:60157700-60157719 Msa1299130:CDS 40.0%
AAACTCGTTGATGTAGGAAC+TGG + chr8_3:60157928-60157947 Msa1299130:CDS 40.0%
AGATTGGGATGTAACACTGA+TGG + chr8_3:60158581-60158600 Msa1299130:intron 40.0%
TGATGGAGTCTATGAACAAG+CGG + chr8_3:60158598-60158617 Msa1299130:CDS 40.0%
AATTGTAAGAGGAAGAGCAG+AGG + chr8_3:60158671-60158690 Msa1299130:CDS 40.0%
AATTTGACATAGCAGTAGCC+AGG + chr8_3:60158803-60158822 Msa1299130:CDS 40.0%
ATTTGACATAGCAGTAGCCA+GGG + chr8_3:60158804-60158823 Msa1299130:CDS 40.0%
GTTGCAGAGACGAGAATATT+AGG + chr8_3:60158829-60158848 Msa1299130:CDS 40.0%
TTTGTCCCTCTGTTTGATTG+TGG + chr8_3:60159010-60159029 Msa1299130:intron 40.0%
GTGGTATTAAAATGCATCGC+TGG + chr8_3:60159029-60159048 Msa1299130:intron 40.0%
ACATGGTACCTCGAATTTCA+AGG - chr8_3:60159153-60159172 None:intergenic 40.0%
! TGAAATTCGAGGTACCATGT+TGG + chr8_3:60159153-60159172 Msa1299130:intron 40.0%
ATCGATATTCCAGACCAACA+TGG - chr8_3:60159170-60159189 None:intergenic 40.0%
GACACAGTCCTACAATTCAA+AGG + chr8_3:60159208-60159227 Msa1299130:intron 40.0%
GGAATGTTTATTGCTGCCAA+AGG + chr8_3:60159354-60159373 Msa1299130:CDS 40.0%
TAGCATCTGTTACATACCTC+AGG - chr8_3:60159387-60159406 None:intergenic 40.0%
! AATCACTAGCTTCTCCTGTT+CGG + chr8_3:60159603-60159622 Msa1299130:intron 40.0%
TGCAATTTGTCTGTGTTTCC+CGG - chr8_3:60159637-60159656 None:intergenic 40.0%
AGAGACGTTAGACACTTAGA+CGG - chr8_3:60159833-60159852 None:intergenic 40.0%
AAGACAGTTTGCAACCAGTA+CGG - chr8_3:60159888-60159907 None:intergenic 40.0%
!! CTGTCTTGATTTTAGTGGAG+TGG + chr8_3:60159901-60159920 Msa1299130:intron 40.0%
!! CTCTGTTGAGTATTGAACCA+TGG + chr8_3:60159971-60159990 Msa1299130:intron 40.0%
GCAAGGAAACGAGAGAAAAA+AGG + chr8_3:60160167-60160186 Msa1299130:intron 40.0%
!! TATAACCTACTGGCTTCATC+CGG + chr8_3:60160651-60160670 Msa1299130:intron 40.0%
TACACACCCAACCTAAGTAT+AGG + chr8_3:60160759-60160778 Msa1299130:intron 40.0%
CTGCTTTCCTATACTTAGGT+TGG - chr8_3:60160769-60160788 None:intergenic 40.0%
TTGGCACGGAAGTTATTTGT+GGG - chr8_3:60160793-60160812 None:intergenic 40.0%
ATTGGCACGGAAGTTATTTG+TGG - chr8_3:60160794-60160813 None:intergenic 40.0%
TTTGCAGTTTGCGATGATAG+TGG - chr8_3:60160839-60160858 None:intergenic 40.0%
! TGATGCACCCATTTTCTTGA+TGG - chr8_3:60161042-60161061 None:intergenic 40.0%
ATAGCAAGAGTTAAGTTCCG+GGG - chr8_3:60161099-60161118 None:intergenic 40.0%
GGTTAGAAGAACTATCTGAC+TGG - chr8_3:60161263-60161282 None:intergenic 40.0%
! AGCCGTAACATCAGTTTTCA+AGG + chr8_3:60161320-60161339 Msa1299130:intron 40.0%
GAGGGTAAACTGTAAAAGTC+AGG + chr8_3:60161425-60161444 Msa1299130:intron 40.0%
! CTAGCTGTACCTTTTGATCA+AGG + chr8_3:60161448-60161467 Msa1299130:intron 40.0%
!!! GTTTTAGTTGAAATGGACCG+AGG + chr8_3:60161498-60161517 Msa1299130:intron 40.0%
! TTGTCTTCCCTGGCATTTTT+AGG + chr8_3:60161829-60161848 Msa1299130:intron 40.0%
TACTGCTGTCATATGTCTGA+AGG + chr8_3:60162016-60162035 Msa1299130:CDS 40.0%
GGAAAACGGGGATATTTCAT+TGG - chr8_3:60162053-60162072 None:intergenic 40.0%
! ATGAAATATCCCCGTTTTCC+TGG + chr8_3:60162053-60162072 Msa1299130:CDS 40.0%
! TGAAATATCCCCGTTTTCCT+GGG + chr8_3:60162054-60162073 Msa1299130:CDS 40.0%
AGTGAGCATCCATCTTACAA+TGG - chr8_3:60162095-60162114 None:intergenic 40.0%
AAGATGGATGCTCACTCTAT+TGG + chr8_3:60162099-60162118 Msa1299130:exon 40.0%
ATAGGATTGGGTCAGAAGAA+CGG - chr8_3:60162135-60162154 None:intergenic 40.0%
TTGAACCATTGTCTGAGAGA+AGG + chr8_3:60162163-60162182 Msa1299130:three_prime_UTR 40.0%
AGGTTCATCAATGTCTCCAA+AGG - chr8_3:60162527-60162546 None:intergenic 40.0%
! GAGATTTTTGCATTGCCTTC+AGG - chr8_3:60162547-60162566 None:intergenic 40.0%
!! TTGATTTGTTCTCAACTCCC+TGG + chr8_3:60162739-60162758 Msa1299130:three_prime_UTR 40.0%
CAAGATATGCATAATCAGCC+AGG - chr8_3:60162760-60162779 None:intergenic 40.0%
!!! CTAGGGGTATTTTGGTACGA+GGG + chr8_3:60157398-60157417 Msa1299130:five_prime_UTR 45.0%
ACGAGGGAACCATTCTTTCT+TGG + chr8_3:60157414-60157433 Msa1299130:five_prime_UTR 45.0%
ACAACAGTAGTTGAGTGCAG+CGG + chr8_3:60157479-60157498 Msa1299130:five_prime_UTR 45.0%
TCTACAAACACCTTACGCAC+CGG + chr8_3:60157579-60157598 Msa1299130:CDS 45.0%
AGGTTAGGGTTACGAAATGG+GGG - chr8_3:60157646-60157665 None:intergenic 45.0%
GAGGTTAGGGTTACGAAATG+GGG - chr8_3:60157647-60157666 None:intergenic 45.0%
GAGAGGTTAGGGTTACGAAA+TGG - chr8_3:60157649-60157668 None:intergenic 45.0%
! AATTTGGTCTTTCTGGCGAG+AGG - chr8_3:60157666-60157685 None:intergenic 45.0%
CAATGGAGGCAAAATTGCGA+GGG - chr8_3:60157863-60157882 None:intergenic 45.0%
TCAATGGAGGCAAAATTGCG+AGG - chr8_3:60157864-60157883 None:intergenic 45.0%
GCAATGGCTAAAACTACTCC+AGG - chr8_3:60157964-60157983 None:intergenic 45.0%
!! GTTTTAGCCATTGCTAGACC+AGG + chr8_3:60157970-60157989 Msa1299130:CDS 45.0%
GAGCACGTTGTGGATGTTAT+CGG + chr8_3:60158633-60158652 Msa1299130:CDS 45.0%
AACGGTAGACAATACTCAGC+TGG - chr8_3:60159321-60159340 None:intergenic 45.0%
! AGCTGAGTATTGTCTACCGT+TGG + chr8_3:60159320-60159339 Msa1299130:intron 45.0%
CTCCTGTTCGGTAAATAGAC+CGG + chr8_3:60159615-60159634 Msa1299130:intron 45.0%
TCCTGTTCGGTAAATAGACC+GGG + chr8_3:60159616-60159635 Msa1299130:intron 45.0%
!! TCAGACTGGATTAGTCTGAC+TGG + chr8_3:60159777-60159796 Msa1299130:intron 45.0%
CTGTGAACCATTTCATTGGG+TGG + chr8_3:60159805-60159824 Msa1299130:intron 45.0%
CAGTTATTGAACCACCGTAC+TGG + chr8_3:60159871-60159890 Msa1299130:intron 45.0%
GTGGGTCTGATTCCATATGT+GGG - chr8_3:60160414-60160433 None:intergenic 45.0%
TGTGGGTCTGATTCCATATG+TGG - chr8_3:60160415-60160434 None:intergenic 45.0%
ATTATCCGGATGAAGCCAGT+AGG - chr8_3:60160659-60160678 None:intergenic 45.0%
GGGTCTGCTTTCCTATACTT+AGG - chr8_3:60160773-60160792 None:intergenic 45.0%
AACTAAGAGAATGAGGGGAG+GGG - chr8_3:60161354-60161373 None:intergenic 45.0%
GAACTAAGAGAATGAGGGGA+GGG - chr8_3:60161355-60161374 None:intergenic 45.0%
CCACTGAACATGCAACATCA+AGG - chr8_3:60161971-60161990 None:intergenic 45.0%
CCTTGATGTTGCATGTTCAG+TGG + chr8_3:60161968-60161987 Msa1299130:intron 45.0%
! TAGTTGGTGTCCCAGGAAAA+CGG - chr8_3:60162067-60162086 None:intergenic 45.0%
GGAGACATTGATGAACCTGA+AGG + chr8_3:60162529-60162548 Msa1299130:three_prime_UTR 45.0%
GTACGTTGCCATATGTGTGA+TGG + chr8_3:60162611-60162630 Msa1299130:three_prime_UTR 45.0%
CTAAGCCTGAGTGAAGGATA+GGG + chr8_3:60163044-60163063 Msa1299130:three_prime_UTR 45.0%
!!! GCTAGGGGTATTTTGGTACG+AGG + chr8_3:60157397-60157416 Msa1299130:five_prime_UTR 50.0%
! GTGTTGCTAGCCGTTTGTAG+TGG - chr8_3:60157461-60157480 None:intergenic 50.0%
CAACAGTAGTTGAGTGCAGC+GGG + chr8_3:60157480-60157499 Msa1299130:five_prime_UTR 50.0%
GAAATGGGGGAGATTGGATG+TGG - chr8_3:60157633-60157652 None:intergenic 50.0%
GGTTACGAAATGGGGGAGAT+TGG - chr8_3:60157639-60157658 None:intergenic 50.0%
! GTCTTTCTGGCGAGAGGTTA+GGG - chr8_3:60157660-60157679 None:intergenic 50.0%
GTTGATGTAGGAACTGGTGC+AGG + chr8_3:60157934-60157953 Msa1299130:CDS 50.0%
CACTTGACCTGGTCTAGCAA+TGG - chr8_3:60157980-60157999 None:intergenic 50.0%
! GAACAAGCGGTGCGTTTTCT+TGG + chr8_3:60158611-60158630 Msa1299130:CDS 50.0%
! CGTTTTCTTGGAGCACGTTG+TGG + chr8_3:60158623-60158642 Msa1299130:CDS 50.0%
!! CTTGAAATGGTAATGGGCGC+AGG + chr8_3:60158745-60158764 Msa1299130:intron 50.0%
! TTCGAGGTACCATGTTGGTC+TGG + chr8_3:60159158-60159177 Msa1299130:intron 50.0%
!! TGTCTACCGTTGGTTCGTGT+TGG + chr8_3:60159330-60159349 Msa1299130:CDS 50.0%
!! GTCTACCGTTGGTTCGTGTT+GGG + chr8_3:60159331-60159350 Msa1299130:CDS 50.0%
!! TCTACCGTTGGTTCGTGTTG+GGG + chr8_3:60159332-60159351 Msa1299130:CDS 50.0%
ATTCCCCCAACACGAACCAA+CGG - chr8_3:60159339-60159358 None:intergenic 50.0%
TACCTCAGGATCGTGACCTT+TGG - chr8_3:60159373-60159392 None:intergenic 50.0%
TCCCGGTCTATTTACCGAAC+AGG - chr8_3:60159620-60159639 None:intergenic 50.0%
ACAGTTTGCAACCAGTACGG+TGG - chr8_3:60159885-60159904 None:intergenic 50.0%
CGAACTAAGAGAATGAGGGG+AGG - chr8_3:60161356-60161375 None:intergenic 50.0%
GTGGAATCGCAAAGCCCATA+TGG + chr8_3:60161987-60162006 Msa1299130:intron 50.0%
CAGCAGTACGCTGACCATAT+GGG - chr8_3:60162004-60162023 None:intergenic 50.0%
ACAGCAGTACGCTGACCATA+TGG - chr8_3:60162005-60162024 None:intergenic 50.0%
CGGGGATATTTCATTGGGGT+GGG - chr8_3:60162047-60162066 None:intergenic 50.0%
ACGGGGATATTTCATTGGGG+TGG - chr8_3:60162048-60162067 None:intergenic 50.0%
! AGTTGGTGTCCCAGGAAAAC+GGG - chr8_3:60162066-60162085 None:intergenic 50.0%
! GGTTCTTTAGTTGGTGTCCC+AGG - chr8_3:60162074-60162093 None:intergenic 50.0%
AAGAGCCTAAGCCTGAGTGA+AGG + chr8_3:60163038-60163057 Msa1299130:three_prime_UTR 50.0%
CCTATCCTTCACTCAGGCTT+AGG - chr8_3:60163046-60163065 None:intergenic 50.0%
CCTAAGCCTGAGTGAAGGAT+AGG + chr8_3:60163043-60163062 Msa1299130:three_prime_UTR 50.0%
CTTTGCCCTATCCTTCACTC+AGG - chr8_3:60163052-60163071 None:intergenic 50.0%
! ATAACGTGAAAGCGCGCGGT+GGG + chr8_3:60157503-60157522 Msa1299130:five_prime_UTR 55.0%
!! CGCGGTGGGTTGAAGTGAAA+TGG + chr8_3:60157517-60157536 Msa1299130:exon 55.0%
! GGTCTTTCTGGCGAGAGGTT+AGG - chr8_3:60157661-60157680 None:intergenic 55.0%
AATGGGCGCAGGACAGAGTT+TGG + chr8_3:60158756-60158775 Msa1299130:intron 55.0%
ATGGGCGCAGGACAGAGTTT+GGG + chr8_3:60158757-60158776 Msa1299130:intron 55.0%
!! CTACCGTTGGTTCGTGTTGG+GGG + chr8_3:60159333-60159352 Msa1299130:CDS 55.0%
TGCCAAAGGTCACGATCCTG+AGG + chr8_3:60159368-60159387 Msa1299130:CDS 55.0%
GACGGCACCACCCAATGAAA+TGG - chr8_3:60159815-60159834 None:intergenic 55.0%
!! AGGTACACAGCTCTAGACCC+CGG + chr8_3:60161079-60161098 Msa1299130:intron 55.0%
! GTTGGTGTCCCAGGAAAACG+GGG - chr8_3:60162065-60162084 None:intergenic 55.0%
CGGGTCCTTCTCTCAGACAA+TGG - chr8_3:60162171-60162190 None:intergenic 55.0%
GTCGCTCGTGCACATCATAC+GGG - chr8_3:60162190-60162209 None:intergenic 55.0%
GGTCGCTCGTGCACATCATA+CGG - chr8_3:60162191-60162210 None:intergenic 55.0%
! CGGGATAACGTGAAAGCGCG+CGG + chr8_3:60157499-60157518 Msa1299130:five_prime_UTR 60.0%
! GATAACGTGAAAGCGCGCGG+TGG + chr8_3:60157502-60157521 Msa1299130:five_prime_UTR 60.0%
GGAACTGGTGCAGGTCTTCC+TGG + chr8_3:60157943-60157962 Msa1299130:CDS 60.0%
TGGGCGCAGGACAGAGTTTG+GGG + chr8_3:60158758-60158777 Msa1299130:intron 60.0%
TCTCGTCTCTGCAACTGCCC+TGG - chr8_3:60158824-60158843 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 60157381 60163082 60157381 ID=Msa1299130;Name=Msa1299130
chr8_3 mRNA 60157381 60163082 60157381 ID=Msa1299130-mRNA-1;Parent=Msa1299130;Name=Msa1299130-mRNA-1;_AED=0.06;_eAED=0.06;_QI=155|0.83|0.85|1|1|1|7|982|271
chr8_3 exon 60157381 60157721 60157381 ID=Msa1299130-mRNA-1:exon:17464;Parent=Msa1299130-mRNA-1
chr8_3 exon 60157799 60157991 60157799 ID=Msa1299130-mRNA-1:exon:17465;Parent=Msa1299130-mRNA-1
chr8_3 exon 60158583 60158692 60158583 ID=Msa1299130-mRNA-1:exon:17466;Parent=Msa1299130-mRNA-1
chr8_3 exon 60158772 60158850 60158772 ID=Msa1299130-mRNA-1:exon:17467;Parent=Msa1299130-mRNA-1
chr8_3 exon 60159322 60159389 60159322 ID=Msa1299130-mRNA-1:exon:17468;Parent=Msa1299130-mRNA-1
chr8_3 exon 60161014 60161080 60161014 ID=Msa1299130-mRNA-1:exon:17469;Parent=Msa1299130-mRNA-1
chr8_3 exon 60161988 60163082 60161988 ID=Msa1299130-mRNA-1:exon:17470;Parent=Msa1299130-mRNA-1
chr8_3 five_prime_UTR 60157381 60157535 60157381 ID=Msa1299130-mRNA-1:five_prime_utr;Parent=Msa1299130-mRNA-1
chr8_3 CDS 60157536 60157721 60157536 ID=Msa1299130-mRNA-1:cds;Parent=Msa1299130-mRNA-1
chr8_3 CDS 60157799 60157991 60157799 ID=Msa1299130-mRNA-1:cds;Parent=Msa1299130-mRNA-1
chr8_3 CDS 60158583 60158692 60158583 ID=Msa1299130-mRNA-1:cds;Parent=Msa1299130-mRNA-1
chr8_3 CDS 60158772 60158850 60158772 ID=Msa1299130-mRNA-1:cds;Parent=Msa1299130-mRNA-1
chr8_3 CDS 60159322 60159389 60159322 ID=Msa1299130-mRNA-1:cds;Parent=Msa1299130-mRNA-1
chr8_3 CDS 60161014 60161080 60161014 ID=Msa1299130-mRNA-1:cds;Parent=Msa1299130-mRNA-1
chr8_3 CDS 60161988 60162100 60161988 ID=Msa1299130-mRNA-1:cds;Parent=Msa1299130-mRNA-1
chr8_3 three_prime_UTR 60162101 60163082 60162101 ID=Msa1299130-mRNA-1:three_prime_utr;Parent=Msa1299130-mRNA-1
Gene Sequence

>Msa1299130

ATGGTACTACTTTTCAATAACTTGCAGTTTTCTCGGTGGACTTTCTACAAACACCTTACGCACCGGAAATATACAACACTCTGTCAGCGCAATTCCACATCCAATCTCCCCCATTTCGTAACCCTAACCTCTCGCCAGAAAGACCAAATTCATCTCTACGTTGACACACTTCTTCAATGGAACAAGCGCATGAATCTAACTGCAGTTAAAGAAGTGAATGAAGTTATGGAAAGACACATTGAGGACTCCCTCGCAATTTTGCCTCCATTGAGCGATAATTATATCAGTCATTGCAGCAATTCCATCGATAAGATTAAACTCGTTGATGTAGGAACTGGTGCAGGTCTTCCTGGAGTAGTTTTAGCCATTGCTAGACCAGATTGGGATGTAACACTGATGGAGTCTATGAACAAGCGGTGCGTTTTCTTGGAGCACGTTGTGGATGTTATCGGTTCCTCCAACGTTCAAATTGTAAGAGGAAGAGCAGAGAGTTTGGGGCAGAATCTTTGCTACAGAGAGAAATTTGACATAGCAGTAGCCAGGGCAGTTGCAGAGACGAGAATATTAGCTGAGTATTGTCTACCGTTGGTTCGTGTTGGGGGAATGTTTATTGCTGCCAAAGGTCACGATCCTGAGGATGAAGTTAAGAAAGCTGAAAACGCCATCAAGAAAATGGGTGCATCATTATTGCAAGTATGCTCAGTGGAATCGCAAAGCCCATATGGTCAGCGTACTGCTGTCATATGTCTGAAGGATCGTCCCACCCCAATGAAATATCCCCGTTTTCCTGGGACACCAACTAAAGAACCATTGTAA
Protein sequence

>Msa1299130

MVLLFNNLQFSRWTFYKHLTHRKYTTLCQRNSTSNLPHFVTLTSRQKDQIHLYVDTLLQWNKRMNLTAVKEVNEVMERHIEDSLAILPPLSDNYISHCSNSIDKIKLVDVGTGAGLPGVVLAIARPDWDVTLMESMNKRCVFLEHVVDVIGSSNVQIVRGRAESLGQNLCYREKFDIAVARAVAETRILAEYCLPLVRVGGMFIAAKGHDPEDEVKKAENAIKKMGASLLQVCSVESQSPYGQRTAVICLKDRPTPMKYPRFPGTPTKEPL*