AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0276430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276430 MtrunA17_Chr2g0288871 96.803 563 8 3 1 563 1 553 0.0 1116
Msa0276430 MtrunA17_Chr4g0075201 54.639 485 149 20 59 524 33 465 5.99e-139 412
Msa0276430 MtrunA17_Chr2g0322391 47.177 549 195 19 62 556 81 588 1.81e-126 383
Msa0276430 MtrunA17_Chr3g0099641 43.478 483 196 14 60 535 32 444 6.54e-108 331
Msa0276430 MtrunA17_Chr4g0025061 36.577 555 226 18 67 542 60 567 3.09e-87 282
Msa0276430 MtrunA17_Chr7g0270831 40.984 488 173 15 67 545 30 411 8.21e-86 273
Msa0276430 MtrunA17_Chr4g0025051 36.475 573 232 20 67 550 35 564 1.15e-74 248
Msa0276430 MtrunA17_Chr4g0024391 38.105 475 189 16 144 542 1 446 1.59e-74 245
Msa0276430 MtrunA17_Chr2g0302391 33.967 421 183 14 143 541 68 415 6.80e-56 194
Msa0276430 MtrunA17_Chr7g0216891 33.043 460 222 14 150 541 47 488 3.13e-55 196
Msa0276430 MtrunA17_Chr4g0060271 36.095 507 245 17 117 555 43 538 2.48e-46 172
Msa0276430 MtrunA17_Chr4g0051181 39.103 312 160 9 92 388 28 324 3.45e-45 166
Msa0276430 MtrunA17_Chr5g0419241 90.476 63 6 0 275 337 45 107 2.54e-35 128
Msa0276430 MtrunA17_Chr1g0150281 33.191 235 110 5 150 383 28 216 1.47e-28 115
Msa0276430 MtrunA17_Chr4g0001361 38.816 152 69 4 282 433 137 264 3.54e-27 112
Msa0276430 MtrunA17_Chr3g0101131 31.228 285 141 10 112 369 220 476 1.62e-25 110
Msa0276430 MtrunA17_Chr5g0445311 55.000 80 35 1 290 369 347 425 2.14e-24 107
Msa0276430 MtrunA17_Chr1g0150271 45.918 98 51 1 302 397 96 193 2.22e-24 102
Msa0276430 MtrunA17_Chr7g0218081 35.294 170 104 3 217 382 317 484 2.37e-24 106
Msa0276430 MtrunA17_Chr3g0136961 50.588 85 42 0 292 376 123 207 2.73e-24 103
Msa0276430 MtrunA17_Chr3g0079691 50.000 90 44 1 280 369 468 556 1.24e-23 105
Msa0276430 MtrunA17_Chr3g0079691 44.086 93 50 2 276 368 249 339 1.10e-16 83.6
Msa0276430 MtrunA17_Chr7g0270191 48.421 95 44 2 291 385 129 218 1.42e-23 101
Msa0276430 MtrunA17_Chr3g0106491 53.165 79 36 1 289 367 347 424 2.05e-23 103
Msa0276430 MtrunA17_Chr3g0106491 30.872 149 70 4 221 369 143 258 2.33e-11 66.2
Msa0276430 MtrunA17_Chr4g0004911 53.165 79 36 1 289 367 318 395 2.47e-23 103
Msa0276430 MtrunA17_Chr4g0004911 42.667 75 40 2 293 367 172 243 2.40e-14 75.9
Msa0276430 MtrunA17_Chr5g0432161 53.086 81 37 1 289 369 403 482 4.23e-23 103
Msa0276430 MtrunA17_Chr5g0432161 51.667 60 27 2 308 367 245 302 1.46e-13 73.6
Msa0276430 MtrunA17_Chr7g0243891 52.326 86 40 1 284 369 351 435 4.36e-23 103
Msa0276430 MtrunA17_Chr5g0418191 45.918 98 52 1 289 386 302 398 1.80e-22 100
Msa0276430 MtrunA17_Chr5g0418191 39.583 96 56 2 308 403 152 245 3.61e-13 71.6
Msa0276430 MtrunA17_Chr5g0447701 45.631 103 49 3 282 379 222 322 2.94e-22 99.0
Msa0276430 MtrunA17_Chr5g0447701 41.250 80 45 2 305 384 90 167 2.11e-11 65.9
Msa0276430 MtrunA17_Chr2g0333851 51.190 84 36 2 289 367 146 229 3.21e-22 97.8
Msa0276430 MtrunA17_Chr4g0042831 47.368 95 46 2 289 380 260 353 3.86e-22 98.6
Msa0276430 MtrunA17_Chr4g0051881 45.055 91 49 1 294 384 165 254 4.18e-22 97.8
Msa0276430 MtrunA17_Chr7g0249311 52.500 80 37 1 290 369 375 453 5.00e-22 100
Msa0276430 MtrunA17_Chr7g0249311 50.000 60 28 2 308 367 180 237 1.48e-11 67.4
Msa0276430 MtrunA17_Chr2g0294231 44.348 115 53 4 291 401 187 294 5.45e-22 98.2
Msa0276430 MtrunA17_Chr7g0224801 53.521 71 32 1 296 366 82 151 5.52e-22 93.2
Msa0276430 MtrunA17_Chr7g0249301 52.500 80 37 1 290 369 275 353 5.71e-22 98.2
Msa0276430 MtrunA17_Chr7g0249301 47.692 65 32 2 303 367 58 120 6.51e-12 67.4
Msa0276430 MtrunA17_Chr1g0150801 42.424 99 55 2 267 365 63 159 5.75e-22 92.8
Msa0276430 MtrunA17_Chr1g0194481 43.269 104 57 2 291 393 142 244 7.11e-21 94.0
Msa0276430 MtrunA17_Chr7g0263531 41.837 98 56 1 270 367 324 420 1.44e-20 94.7
Msa0276430 MtrunA17_Chr7g0263531 43.902 82 40 3 308 389 190 265 2.11e-12 69.3
Msa0276430 MtrunA17_Chr7g0270051 45.361 97 44 2 290 380 30 123 1.88e-20 91.3
Msa0276430 MtrunA17_Chr8g0383251 45.946 74 39 1 294 367 95 167 3.68e-20 88.6
Msa0276430 MtrunA17_Chr5g0418781 50.000 78 38 1 287 364 104 180 6.97e-20 90.1
Msa0276430 MtrunA17_Chr4g0068541 47.619 84 42 2 291 374 192 273 1.10e-19 91.7
Msa0276430 MtrunA17_Chr5g0443131 50.000 74 36 1 294 367 144 216 2.47e-19 89.0
Msa0276430 MtrunA17_Chr7g0248721 34.682 173 98 6 195 365 38 197 3.13e-19 86.7
Msa0276430 MtrunA17_Chr4g0074001 49.351 77 38 1 291 367 343 418 4.14e-19 90.5
Msa0276430 MtrunA17_Chr1g0147881 48.649 74 38 0 291 364 246 319 4.79e-19 88.6
Msa0276430 MtrunA17_Chr5g0401821 50.000 76 38 0 291 366 183 258 5.65e-19 87.4
Msa0276430 MtrunA17_Chr8g0335811 48.000 75 38 1 290 364 137 210 6.62e-19 85.9
Msa0276430 MtrunA17_Chr8g0379461 59.016 61 25 0 307 367 76 136 7.35e-19 86.3
Msa0276430 MtrunA17_Chr4g0053281 49.367 79 40 0 291 369 250 328 8.15e-19 88.2
Msa0276430 MtrunA17_Chr2g0293481 51.316 76 37 0 307 382 267 342 1.55e-18 88.6
Msa0276430 MtrunA17_Chr1g0184691 46.429 84 45 0 291 374 277 360 1.87e-18 87.4
Msa0276430 MtrunA17_Chr2g0284321 56.452 62 27 0 307 368 35 96 2.11e-18 84.3
Msa0276430 MtrunA17_Chr2g0319961 54.286 70 32 0 298 367 71 140 3.00e-18 84.7
Msa0276430 MtrunA17_Chr3g0129361 46.667 75 39 1 290 364 127 200 3.30e-18 84.0
Msa0276430 MtrunA17_Chr3g0129321 47.297 74 38 1 294 367 105 177 5.03e-18 82.8
Msa0276430 MtrunA17_Chr8g0386241 45.570 79 42 1 292 370 88 165 5.14e-18 82.0
Msa0276430 MtrunA17_Chr7g0228941 49.296 71 36 0 294 364 39 109 8.02e-18 79.7
Msa0276430 MtrunA17_Chr1g0188941 41.667 84 48 1 284 367 28 110 9.15e-18 79.3
Msa0276430 MtrunA17_Chr4g0071521 50.000 74 37 0 291 364 229 302 1.70e-17 83.6
Msa0276430 MtrunA17_Chr7g0248691 50.000 74 37 0 304 377 151 224 1.81e-17 84.0
Msa0276430 MtrunA17_Chr2g0289181 34.074 135 79 3 302 426 9 143 5.19e-17 80.5
Msa0276430 MtrunA17_Chr8g0383351 46.053 76 39 2 290 364 142 216 6.70e-17 80.5
Msa0276430 MtrunA17_Chr8g0348311 36.036 111 66 1 272 377 115 225 8.57e-17 82.0
Msa0276430 MtrunA17_Chr3g0139021 47.297 74 39 0 291 364 298 371 9.07e-17 82.8
Msa0276430 MtrunA17_Chr8g0387501 44.444 72 40 0 306 377 128 199 1.24e-15 77.4
Msa0276430 MtrunA17_Chr6g0485431 46.667 75 38 2 294 367 141 214 1.13e-14 75.9
Msa0276430 MtrunA17_Chr7g0238921 37.190 121 59 3 267 372 70 188 1.44e-14 75.1
Msa0276430 MtrunA17_Chr1g0202461 46.479 71 38 0 307 377 261 331 2.37e-14 75.1
Msa0276430 MtrunA17_Chr1g0189391 43.056 72 39 2 294 364 84 154 1.39e-13 72.0
Msa0276430 MtrunA17_Chr5g0432071 41.558 77 43 2 308 384 105 179 1.69e-13 69.7
Msa0276430 MtrunA17_Chr3g0126391 54.237 59 25 1 306 362 132 190 4.05e-13 70.9
Msa0276430 MtrunA17_Chr8g0347251 49.275 69 28 2 306 367 135 203 4.49e-12 67.8
Msa0276430 MtrunA17_Chr7g0244971 35.294 102 63 2 288 386 103 204 7.23e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0276430 AT1G62300.1 51.155 606 180 30 1 544 1 552 1.40e-153 452
Msa0276430 AT4G04450.1 52.490 522 157 23 62 535 25 503 9.54e-141 418
Msa0276430 AT4G04450.2 55.310 452 118 21 125 535 1 409 5.08e-129 384
Msa0276430 AT4G22070.4 53.196 485 166 20 43 479 1 472 1.06e-119 364
Msa0276430 AT4G22070.3 53.196 485 166 20 43 479 1 472 1.06e-119 364
Msa0276430 AT4G22070.2 53.196 485 166 20 43 479 1 472 1.06e-119 364
Msa0276430 AT4G22070.1 53.196 485 166 20 43 479 1 472 1.06e-119 364
Msa0276430 AT4G01720.1 40.336 476 196 17 67 532 46 443 1.58e-65 221
Msa0276430 AT5G15130.1 34.389 442 230 12 143 536 35 464 4.87e-50 181
Msa0276430 AT1G68150.1 40.711 253 108 8 146 388 96 316 8.17e-49 174
Msa0276430 AT5G15130.2 34.332 434 225 12 151 536 1 422 2.05e-48 176
Msa0276430 AT1G18860.1 31.828 487 246 12 132 537 30 511 1.04e-43 163
Msa0276430 AT1G69810.1 33.846 325 191 8 128 437 14 329 2.31e-41 154
Msa0276430 AT1G69810.2 53.691 149 63 3 290 437 128 271 6.00e-37 140
Msa0276430 AT4G31800.1 34.156 243 123 5 145 385 47 254 1.55e-31 124
Msa0276430 AT1G80840.1 32.883 222 94 5 150 367 36 206 5.45e-29 117
Msa0276430 AT4G31800.2 50.505 99 44 2 292 385 91 189 6.64e-25 104
Msa0276430 AT2G38470.1 49.451 91 45 1 289 379 344 433 7.94e-25 108
Msa0276430 AT4G26640.5 53.846 78 35 1 290 367 188 264 6.61e-24 104
Msa0276430 AT4G26640.5 37.363 91 55 2 277 367 5 93 5.23e-13 71.2
Msa0276430 AT4G26640.6 53.846 78 35 1 290 367 188 264 6.61e-24 104
Msa0276430 AT4G26640.6 37.363 91 55 2 277 367 5 93 5.23e-13 71.2
Msa0276430 AT4G26640.4 53.846 78 35 1 290 367 188 264 6.61e-24 104
Msa0276430 AT4G26640.4 37.363 91 55 2 277 367 5 93 5.23e-13 71.2
Msa0276430 AT4G26640.3 53.846 78 35 1 290 367 188 264 6.61e-24 104
Msa0276430 AT4G26640.3 37.363 91 55 2 277 367 5 93 5.23e-13 71.2
Msa0276430 AT2G25000.2 48.864 88 45 0 285 372 81 168 1.22e-23 100
Msa0276430 AT2G25000.4 48.864 88 45 0 285 372 81 168 1.22e-23 100
Msa0276430 AT2G25000.3 46.237 93 50 0 280 372 98 190 1.39e-23 100
Msa0276430 AT4G26640.1 53.846 78 35 1 290 367 292 368 1.57e-23 104
Msa0276430 AT4G26640.7 53.846 78 35 1 290 367 324 400 1.68e-23 104
Msa0276430 AT1G29860.1 36.774 155 86 4 248 396 82 230 1.87e-23 100
Msa0276430 AT1G13960.2 53.571 84 38 1 284 367 233 315 2.11e-23 102
Msa0276430 AT1G13960.2 51.667 60 27 2 308 367 77 134 1.95e-12 69.3
Msa0276430 AT2G25000.1 48.864 88 45 0 285 372 124 211 2.21e-23 100
Msa0276430 AT4G26640.2 53.846 78 35 1 290 367 364 440 2.29e-23 104
Msa0276430 AT1G13960.1 53.571 84 38 1 284 367 386 468 2.85e-23 103
Msa0276430 AT1G13960.1 51.667 60 27 2 308 367 230 287 1.48e-12 70.5
Msa0276430 AT5G26170.1 51.389 72 34 1 293 364 99 169 4.32e-23 97.1
Msa0276430 AT5G56270.1 49.438 89 44 1 281 369 461 548 5.32e-23 103
Msa0276430 AT5G56270.1 50.820 61 28 2 308 368 274 332 5.84e-12 68.9
Msa0276430 AT5G49520.1 51.948 77 36 1 291 367 205 280 9.17e-23 101
Msa0276430 AT4G18170.1 48.913 92 45 2 277 367 141 231 9.61e-23 99.8
Msa0276430 AT2G03340.1 51.163 86 41 1 284 369 392 476 2.04e-22 101
Msa0276430 AT2G03340.1 51.667 60 27 2 308 367 251 308 5.63e-13 72.0
Msa0276430 AT5G07100.2 47.126 87 45 1 281 367 115 200 2.80e-22 95.9
Msa0276430 AT5G07100.2 41.096 73 42 1 308 380 25 96 1.90e-11 64.3
Msa0276430 AT5G07100.4 47.126 87 45 1 281 367 115 200 2.80e-22 95.9
Msa0276430 AT5G07100.4 41.096 73 42 1 308 380 25 96 1.90e-11 64.3
Msa0276430 AT5G07100.5 47.126 87 45 1 281 367 115 200 2.80e-22 95.9
Msa0276430 AT5G07100.5 41.096 73 42 1 308 380 25 96 1.90e-11 64.3
Msa0276430 AT5G07100.3 47.126 87 45 1 281 367 115 200 2.80e-22 95.9
Msa0276430 AT5G07100.3 41.096 73 42 1 308 380 25 96 1.90e-11 64.3
Msa0276430 AT2G04880.2 44.828 87 47 1 286 372 262 347 3.51e-22 100
Msa0276430 AT2G04880.2 46.970 66 33 2 305 370 109 172 2.92e-12 69.3
Msa0276430 AT2G04880.1 44.828 87 47 1 286 372 286 371 4.65e-22 100
Msa0276430 AT2G04880.1 46.970 66 33 2 305 370 109 172 3.58e-12 69.3
Msa0276430 AT5G07100.1 47.126 87 45 1 281 367 208 293 5.30e-22 97.4
Msa0276430 AT5G07100.1 41.096 73 42 1 308 380 118 189 3.67e-11 65.1
Msa0276430 AT1G64000.1 48.235 85 43 1 281 365 88 171 6.12e-22 94.4
Msa0276430 AT5G41570.1 53.750 80 35 2 287 365 77 155 6.52e-22 93.6
Msa0276430 AT5G46350.1 48.864 88 43 2 294 380 170 256 1.02e-21 96.7
Msa0276430 AT3G01080.1 47.619 84 43 1 284 367 283 365 3.76e-21 96.7
Msa0276430 AT3G01080.1 51.667 60 27 2 308 367 168 225 2.27e-11 66.6
Msa0276430 AT3G01080.2 47.619 84 43 1 284 367 321 403 4.29e-21 96.7
Msa0276430 AT3G01080.2 51.667 60 27 2 308 367 206 263 2.22e-11 66.6
Msa0276430 AT2G30250.1 51.250 80 38 1 290 369 311 389 6.23e-21 95.5
Msa0276430 AT2G47260.1 43.243 111 58 2 283 389 150 259 7.35e-21 94.4
Msa0276430 AT2G46130.1 48.780 82 41 1 284 365 7 87 1.23e-20 87.8
Msa0276430 AT1G55600.1 44.444 90 49 1 280 369 280 368 1.59e-20 95.1
Msa0276430 AT5G13080.1 43.000 100 56 1 267 366 27 125 1.77e-20 88.6
Msa0276430 AT4G30935.1 44.554 101 45 3 291 383 315 412 3.44e-20 94.0
Msa0276430 AT4G26440.1 45.545 101 52 2 291 391 356 453 5.76e-20 94.0
Msa0276430 AT2G30590.1 50.000 82 40 1 291 371 297 378 1.18e-19 91.7
Msa0276430 AT3G01970.1 43.137 102 57 1 263 364 21 121 1.43e-19 85.9
Msa0276430 AT1G29280.1 51.429 70 34 0 298 367 65 134 1.54e-19 89.0
Msa0276430 AT1G69310.4 42.353 85 48 1 280 364 120 203 1.97e-19 89.4
Msa0276430 AT1G69310.2 42.353 85 48 1 280 364 120 203 1.97e-19 89.4
Msa0276430 AT1G69310.1 42.353 85 48 1 280 364 120 203 1.97e-19 89.4
Msa0276430 AT4G31800.3 31.683 202 101 5 145 344 47 213 2.05e-19 88.2
Msa0276430 AT2G44745.1 40.909 88 51 1 277 364 115 201 2.53e-19 87.4
Msa0276430 AT5G64810.1 47.887 71 36 1 294 364 97 166 4.76e-19 85.9
Msa0276430 AT2G23320.1 57.627 59 25 0 308 366 241 299 4.89e-19 88.6
Msa0276430 AT4G24240.1 50.000 76 38 0 291 366 265 340 1.17e-18 88.2
Msa0276430 AT3G62340.1 50.000 78 38 1 294 371 105 181 1.21e-18 86.7
Msa0276430 AT5G28650.1 48.649 74 38 0 291 364 246 319 2.26e-18 87.0
Msa0276430 AT4G39410.1 43.902 82 45 1 283 364 199 279 2.64e-18 86.3
Msa0276430 AT3G58710.2 52.857 70 33 0 298 367 61 130 2.71e-18 85.5
Msa0276430 AT3G58710.1 52.857 70 33 0 298 367 62 131 2.73e-18 85.5
Msa0276430 AT2G34830.1 48.193 83 42 1 293 374 200 282 1.05e-17 86.3
Msa0276430 AT1G30650.1 48.193 83 42 1 293 374 202 284 1.29e-17 85.9
Msa0276430 AT2G34830.2 48.193 83 42 1 293 374 209 291 1.30e-17 85.9
Msa0276430 AT3G04670.1 47.297 74 39 0 291 364 246 319 1.30e-17 84.7
Msa0276430 AT2G24570.1 48.649 74 38 0 291 364 227 300 1.41e-17 84.3
Msa0276430 AT4G23550.1 45.679 81 44 0 302 382 135 215 2.13e-17 83.6
Msa0276430 AT4G31550.1 47.297 74 39 0 291 364 230 303 2.75e-17 83.6
Msa0276430 AT4G31550.2 47.297 74 39 0 291 364 229 302 2.84e-17 83.6
Msa0276430 AT4G01250.1 49.296 71 36 0 307 377 128 198 3.38e-17 82.8
Msa0276430 AT2G37260.2 49.333 75 34 2 302 373 262 335 6.97e-17 82.8
Msa0276430 AT2G37260.2 42.105 76 42 2 308 383 84 157 9.11e-14 73.2
Msa0276430 AT2G37260.3 49.333 75 34 2 302 373 264 337 7.11e-17 82.8
Msa0276430 AT2G37260.3 42.105 76 42 2 308 383 86 159 9.25e-14 73.2
Msa0276430 AT5G52830.1 46.753 77 41 0 301 377 159 235 1.23e-16 82.0
Msa0276430 AT2G37260.1 49.333 75 34 2 302 373 344 417 1.40e-16 82.8
Msa0276430 AT2G37260.1 42.105 76 42 2 308 383 166 239 1.56e-13 73.2
Msa0276430 AT2G46130.2 45.122 82 40 2 284 365 7 83 9.36e-16 73.6
Msa0276430 AT1G69310.3 38.824 85 47 2 280 364 120 199 1.58e-14 74.7
Msa0276430 AT5G45050.1 54.098 61 28 0 307 367 1180 1240 3.26e-14 76.6
Msa0276430 AT5G45050.4 50.000 76 36 1 292 367 1028 1101 3.32e-14 76.6
Msa0276430 AT5G45050.2 54.098 61 28 0 307 367 1152 1212 3.53e-14 76.6
Msa0276430 AT2G21900.1 43.939 66 36 1 302 367 104 168 7.01e-14 71.2
Msa0276430 AT5G45260.1 39.216 102 55 3 283 382 1189 1285 2.99e-13 73.6
Msa0276430 AT5G43290.1 41.667 72 40 2 294 364 100 170 3.82e-13 70.5
Msa0276430 AT2G46400.1 41.772 79 44 1 286 362 83 161 9.22e-12 66.6
Msa0276430 AT3G01080.3 51.667 60 27 2 308 367 206 263 1.03e-11 67.0
Msa0276430 AT2G40740.1 47.297 74 34 2 308 376 174 247 2.90e-11 65.1
Msa0276430 AT2G40740.3 47.297 74 34 2 308 376 183 256 4.30e-11 64.7

Find 119 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCCTTGTGTTTCTGATTC+TGG 0.066609 2_3:+8683715 None:intergenic
CTAAATATTCCTTTGTTCTT+AGG 0.146906 2_3:-8682485 Msa0276430:exon
ATAGCTCTTGCTAATAAATT+TGG 0.198143 2_3:+8682982 None:intergenic
CTTTGAAATTGCAATGGATT+TGG 0.199677 2_3:+8682874 None:intergenic
TTTGTTTATTATATATTATA+TGG 0.269132 2_3:-8685143 Msa0276430:exon
TTGACAGGAAATCCTAAAAT+AGG 0.296916 2_3:+8685001 None:intergenic
GCGAGAACAGCGGTGAAATT+AGG 0.306985 2_3:+8682613 None:intergenic
TTTGAAATTGCAATGGATTT+GGG 0.309204 2_3:+8682875 None:intergenic
GCTGCTATCTCCTCCATTAT+TGG 0.315481 2_3:-8682589 Msa0276430:CDS
ATTAGATATGTTGAAGGAAT+AGG 0.320945 2_3:+8685216 None:intergenic
TGAGAGTGAGATATTGGAAT+TGG 0.324537 2_3:+8685079 None:intergenic
AAAGGGTGAGAGTGAGATAT+TGG 0.336997 2_3:+8685073 None:intergenic
GGATGCCAATGGAGGAAATA+TGG 0.352069 2_3:-8683465 Msa0276430:CDS
CGCCGTTGGTGTTACGGGTA+AGG 0.353888 2_3:+8684978 None:intergenic
TAAATCCAATATCATCAAAA+AGG 0.354383 2_3:-8684864 Msa0276430:CDS
GTCTTCGCCGTTGGTGTTAC+GGG 0.361102 2_3:+8684973 None:intergenic
TGCATGGCCACCACCAATAA+TGG 0.361861 2_3:+8682576 None:intergenic
CTTGAGATAGGTACTACTAA+TGG 0.365396 2_3:-8683847 Msa0276430:CDS
CGTCTTCGCCGTTGGTGTTA+CGG 0.365794 2_3:+8684972 None:intergenic
CAAGTACCTAGTTTCTTTCA+AGG 0.368680 2_3:-8682829 Msa0276430:CDS
AGGAATAGCAATGGTAAAAC+TGG 0.382516 2_3:-8683751 Msa0276430:CDS
CTGCAAAGCCGTGTAATTAC+CGG 0.385725 2_3:+8684343 None:intergenic
AAAGAGATTAGATATGTTGA+AGG 0.386115 2_3:+8685210 None:intergenic
AAACTCACTTGTTTGCGAAC+TGG 0.388176 2_3:+8683375 None:intergenic
TTTGTCCATATTTCCTCCAT+TGG 0.390389 2_3:+8683460 None:intergenic
TACTACAGATTGATCACTTC+CGG 0.396054 2_3:+8684640 None:intergenic
AAACTAGGTACTTGATGAAA+TGG 0.398773 2_3:+8682838 None:intergenic
CTTCAATTGTCTCAAGAAGT+TGG 0.400880 2_3:-8682745 Msa0276430:CDS
CCAAGACAATTTCTTGAGAT+AGG 0.405230 2_3:-8683859 Msa0276430:CDS
CCCCTCAATCCCAAAACATA+TGG 0.412646 2_3:+8682357 None:intergenic
GCAGCAAGCATGTTACTATC+AGG 0.425873 2_3:-8683036 Msa0276430:CDS
GGCGGTGATAGCAGCGGTGG+CGG 0.446253 2_3:+8682639 None:intergenic
GCCATAGCTGCTGGTGGTAA+TGG 0.452891 2_3:+8683081 None:intergenic
ATCTCCTCCATTATTGGTGG+TGG 0.457394 2_3:-8682583 Msa0276430:CDS
GAGAGAGTAAAGAGAGGGAG+AGG 0.465186 2_3:+8685238 None:intergenic
CTATAGTATGCTCGAGGACA+TGG 0.465899 2_3:+8683420 None:intergenic
GGCGGTGACCGGAAAATAAC+CGG 0.466327 2_3:-8684950 Msa0276430:CDS
GAGATGCTAAGTCATGTTAC+CGG 0.472299 2_3:-8684362 Msa0276430:CDS
TTGTGTTCATTTGAAGGTGA+TGG 0.474609 2_3:+8684896 None:intergenic
AGCATACTATAGATGCACTA+TGG 0.487105 2_3:-8683409 Msa0276430:CDS
ACGGCGAAGACGGCGGTGAC+CGG 0.490027 2_3:-8684961 Msa0276430:CDS
TATATTATATGGACAAAGCA+TGG 0.490606 2_3:-8685132 Msa0276430:exon
GTGTTACGGGTAAGGTTGAC+AGG 0.491562 2_3:+8684986 None:intergenic
ATTTGCTTGATCTGCAACAT+TGG 0.493278 2_3:+8683657 None:intergenic
TGCTAGATCAGAAGCTTCAA+TGG 0.495447 2_3:-8683596 Msa0276430:intron
TGTTGTTGCTATTGTTTGCA+TGG 0.495497 2_3:+8682560 None:intergenic
TGCCGAGGACAAAACAATCT+TGG 0.496599 2_3:-8683133 Msa0276430:CDS
TGTTGGTTGTGTTCATTTGA+AGG 0.504024 2_3:+8684890 None:intergenic
CAGAATCAGAAACACAAGGC+TGG 0.504762 2_3:-8683714 Msa0276430:CDS
AATAGGAAACATTCTATCGT+TGG 0.514918 2_3:+8685018 None:intergenic
AGAATCAGAAACACAAGGCT+GGG 0.517077 2_3:-8683713 Msa0276430:CDS
CCATTGCTATTCCTCATCTG+AGG 0.520104 2_3:+8683760 None:intergenic
GTGAGATCTAATGTAACAGT+AGG 0.521520 2_3:+8682910 None:intergenic
AGAAAAGAAATCGACTTCAC+CGG 0.522609 2_3:+8684931 None:intergenic
ATATTATATGGACAAAGCAT+GGG 0.526634 2_3:-8685131 Msa0276430:exon
GATCAATCTGTAGTAGATGA+TGG 0.527093 2_3:-8684632 Msa0276430:CDS
AATTGCAAGTGGAGCTTCAA+CGG 0.528483 2_3:-8684412 Msa0276430:CDS
ATATATAATAAACAAACAAA+AGG 0.528509 2_3:+8685150 None:intergenic
GTCACCGCCGTCTTCGCCGT+TGG 0.533790 2_3:+8684964 None:intergenic
GGATCAATGTCAAGTGCAGA+TGG 0.534800 2_3:-8683015 Msa0276430:CDS
ATAGCAATGGTAAAACTGGT+AGG 0.540414 2_3:-8683747 Msa0276430:CDS
ATCTTGGTAACAACATATGA+AGG 0.541003 2_3:-8683117 Msa0276430:CDS
TCCATTACCACCAGCAGCTA+TGG 0.541740 2_3:-8683082 Msa0276430:CDS
GCTATCTCCTCCATTATTGG+TGG 0.542504 2_3:-8682586 Msa0276430:CDS
CGTAACACCAACGGCGAAGA+CGG 0.544973 2_3:-8684971 Msa0276430:CDS
GATGCCATTGCCATAGCTGC+TGG 0.545474 2_3:+8683072 None:intergenic
CCAAGGTGTTGGTGGAGCAA+TGG 0.549924 2_3:-8683884 Msa0276430:CDS
GAATAGGAGAGAGTAAAGAG+AGG 0.553134 2_3:+8685232 None:intergenic
GAATCACCACACTGAAAATG+AGG 0.553361 2_3:-8684294 Msa0276430:intron
TGATATTGGATTTAACATGT+TGG 0.558451 2_3:+8684873 None:intergenic
CCATTGCTCCACCAACACCT+TGG 0.560146 2_3:+8683884 None:intergenic
AATAGGAGAGAGTAAAGAGA+GGG 0.560650 2_3:+8685233 None:intergenic
TCTACCTTGTTCAACAAGCA+TGG 0.561460 2_3:-8682959 Msa0276430:CDS
ATTAACATGGATATTAGAAG+TGG 0.561723 2_3:+8684814 None:intergenic
CCTATCTCAAGAAATTGTCT+TGG 0.566117 2_3:+8683859 None:intergenic
TCAGCTTGCACAATTGCAAG+TGG 0.569056 2_3:-8684423 Msa0276430:intron
TCATGTTACCGGTAATTACA+CGG 0.577854 2_3:-8684351 Msa0276430:CDS
TTGTTGGCTTGGAGCTTGTG+TGG 0.580944 2_3:+8682708 None:intergenic
CTGACCGAGTCAGCTAAAGA+AGG 0.586174 2_3:+8682664 None:intergenic
TTCTGTCCTTGAAAGAAACT+AGG 0.586929 2_3:+8682823 None:intergenic
TGAGGTCTTTGAAATTGCAA+TGG 0.588002 2_3:+8682868 None:intergenic
ACATGGATATTAGAAGTGGA+AGG 0.594815 2_3:+8684818 None:intergenic
TAACATGCTTGCTGCTGCTG+AGG 0.595156 2_3:+8683044 None:intergenic
TAGCAATGGTAAAACTGGTA+GGG 0.595770 2_3:-8683746 Msa0276430:CDS
ACAGCCTTCTTTAGCTGACT+CGG 0.597997 2_3:-8682668 Msa0276430:CDS
TAAGGAAGCTTACATTAACA+TGG 0.598862 2_3:+8684801 None:intergenic
TCGTTGGTATAAGTAGATGA+TGG 0.603216 2_3:+8685034 None:intergenic
AACCTTACCCGTAACACCAA+CGG 0.603945 2_3:-8684980 Msa0276430:CDS
AATGAGAAAAGCTCGTGTCT+CGG 0.604308 2_3:-8683623 Msa0276430:CDS
TCTAATGTAACAGTAGGGAA+TGG 0.608110 2_3:+8682916 None:intergenic
GGCTTTGCAGATGCAACTTG+TGG 0.608912 2_3:-8684330 Msa0276430:CDS
GGATAATTGCAGATAAGTGA+TGG 0.611432 2_3:-8683486 Msa0276430:intron
GGTTTACAACTTGCAAACAC+CGG 0.613072 2_3:-8684659 Msa0276430:CDS
ATCGGCGGTGATAGCAGCGG+TGG 0.617279 2_3:+8682636 None:intergenic
TGAGATCTAATGTAACAGTA+GGG 0.618128 2_3:+8682911 None:intergenic
GAGTCAGCTAAAGAAGGCTG+TGG 0.624335 2_3:+8682670 None:intergenic
GATCAAACACACCTCAGATG+AGG 0.626860 2_3:-8683771 Msa0276430:CDS
ACCACCAGCAGCTATGGCAA+TGG 0.626876 2_3:-8683076 Msa0276430:CDS
ATAGGTTCAACGTTGTGCCG+AGG 0.627663 2_3:-8683148 Msa0276430:intron
TATAGATGCACTATGGCAGT+CGG 0.632166 2_3:-8683402 Msa0276430:CDS
TGATGAAATGGTGCATGTTG+AGG 0.633017 2_3:+8682850 None:intergenic
TAGCTGCTGGTGGTAATGGA+TGG 0.633923 2_3:+8683085 None:intergenic
AACAAGGAACCTAAGAACAA+AGG 0.634270 2_3:+8682476 None:intergenic
GTTGCCATGCTTGTTGAACA+AGG 0.639105 2_3:+8682955 None:intergenic
GAATCAGAAACACAAGGCTG+GGG 0.640268 2_3:-8683712 Msa0276430:CDS
GATAGCAGCTGCGAGAACAG+CGG 0.642227 2_3:+8682603 None:intergenic
AGCGGTGAAATTAGGATCGG+CGG 0.644865 2_3:+8682621 None:intergenic
AACAGCGGTGAAATTAGGAT+CGG 0.645945 2_3:+8682618 None:intergenic
TAAGTGATGGATGCCAATGG+AGG 0.670782 2_3:-8683473 Msa0276430:CDS
AACACCAACGGCGAAGACGG+CGG 0.671264 2_3:-8684968 Msa0276430:CDS
GTGCATCTATAGTATGCTCG+AGG 0.675667 2_3:+8683414 None:intergenic
CCTCAGATGAGGAATAGCAA+TGG 0.676716 2_3:-8683760 Msa0276430:CDS
TATTATATGGACAAAGCATG+GGG 0.678619 2_3:-8685130 Msa0276430:exon
AGGATCGGCGGTGATAGCAG+CGG 0.681008 2_3:+8682633 None:intergenic
GCCATTGCCATAGCTGCTGG+TGG 0.689582 2_3:+8683075 None:intergenic
ATGGCCACCACCAATAATGG+AGG 0.694001 2_3:+8682579 None:intergenic
TAAACGCGCTAAGACTACTG+AGG 0.707106 2_3:-8684588 Msa0276430:intron
AGATAAGTGATGGATGCCAA+TGG 0.716557 2_3:-8683476 Msa0276430:CDS
AGTCCAGAATCAGAAACACA+AGG 0.719780 2_3:-8683718 Msa0276430:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATATATTTTTAAAAA+AGG + chr2_3:8685057-8685076 None:intergenic 0.0%
!! ATATATAATAAACAAACAAA+AGG + chr2_3:8682342-8682361 None:intergenic 10.0%
!! TTAAATATGAGAAATTAATA+AGG + chr2_3:8682709-8682728 None:intergenic 10.0%
!! AATTAATATTGTTAAAATTC+AGG - chr2_3:8683554-8683573 Msa0276430:intron 10.0%
!! GATAGAAAGAAATTAAAAAA+AGG + chr2_3:8682736-8682755 None:intergenic 15.0%
!!! TTTTTTCAAATATTATAGAC+TGG - chr2_3:8682809-8682828 Msa0276430:CDS 15.0%
!! AATTAAATCACAATTGATTA+AGG - chr2_3:8683935-8683954 Msa0276430:intron 15.0%
!!! ATTGATGTTTTTTTGTTAAT+AGG - chr2_3:8684323-8684342 Msa0276430:CDS 15.0%
!! TAATATTTATCTGAAAAACA+AGG + chr2_3:8685032-8685051 None:intergenic 15.0%
!! TAAATCCAATATCATCAAAA+AGG - chr2_3:8682625-8682644 Msa0276430:CDS 20.0%
!! GTTTATATATCAATTTCATC+CGG + chr2_3:8683032-8683051 None:intergenic 20.0%
!! TATGGAATTCAAATCTTAAA+TGG - chr2_3:8683316-8683335 Msa0276430:intron 20.0%
!!! TATAATCAGTCAAAATTTTC+TGG - chr2_3:8684720-8684739 Msa0276430:intron 20.0%
!!! ATTATTCCTTTTTTTGTACA+TGG - chr2_3:8685072-8685091 Msa0276430:CDS 20.0%
!!! TTATTCCTTTTTTTGTACAT+GGG - chr2_3:8685073-8685092 Msa0276430:CDS 20.0%
!!! TTTTTCACATTGAATAATCT+AGG - chr2_3:8685214-8685233 Msa0276430:five_prime_UTR 20.0%
! ATTAGATATGTTGAAGGAAT+AGG + chr2_3:8682276-8682295 None:intergenic 25.0%
! AAAGAGATTAGATATGTTGA+AGG + chr2_3:8682282-8682301 None:intergenic 25.0%
! TATATTATATGGACAAAGCA+TGG - chr2_3:8682357-8682376 Msa0276430:three_prime_UTR 25.0%
! ATATTATATGGACAAAGCAT+GGG - chr2_3:8682358-8682377 Msa0276430:three_prime_UTR 25.0%
!! GATAGAATGTTTCCTATTTT+AGG - chr2_3:8682476-8682495 Msa0276430:three_prime_UTR 25.0%
! TGATATTGGATTTAACATGT+TGG + chr2_3:8682619-8682638 None:intergenic 25.0%
!!! AATCTCCTTTTTGATGATAT+TGG + chr2_3:8682633-8682652 None:intergenic 25.0%
! ATTAACATGGATATTAGAAG+TGG + chr2_3:8682678-8682697 None:intergenic 25.0%
!! ATGCAACTAGTAATTTTATG+TGG - chr2_3:8683000-8683019 Msa0276430:CDS 25.0%
!! TAATTTTATGTGGTCTTTAC+CGG - chr2_3:8683010-8683029 Msa0276430:CDS 25.0%
! GACTTTGTAAACTCAAAATA+TGG - chr2_3:8683298-8683317 Msa0276430:intron 25.0%
! CAATCTGGCATATAATATAA+GGG + chr2_3:8683520-8683539 None:intergenic 25.0%
! TTATTAACATGTTACCAATC+TGG + chr2_3:8683535-8683554 None:intergenic 25.0%
!!! AATATTTTCTGAGACTTGTT+TGG + chr2_3:8683804-8683823 None:intergenic 25.0%
!! TTTCTAACTGAATTTTGTGA+TGG - chr2_3:8683982-8684001 Msa0276430:intron 25.0%
!!! CATTTGGACTATTTTTTTAG+TGG + chr2_3:8684175-8684194 None:intergenic 25.0%
! AATTTAGAAAAAGCGACATT+TGG + chr2_3:8684191-8684210 None:intergenic 25.0%
! TCTAAATTTAGTGACGAAAT+TGG - chr2_3:8684203-8684222 Msa0276430:intron 25.0%
! ATAGCTCTTGCTAATAAATT+TGG + chr2_3:8684510-8684529 None:intergenic 25.0%
!! TTTGAAATTGCAATGGATTT+GGG + chr2_3:8684617-8684636 None:intergenic 25.0%
!! AATACAATTAGCAACTTTTC+AGG - chr2_3:8684978-8684997 Msa0276430:CDS 25.0%
! CTAAATATTCCTTTGTTCTT+AGG - chr2_3:8685004-8685023 Msa0276430:CDS 25.0%
!!! TCTTTTTAGTCCATATGTTT+TGG - chr2_3:8685122-8685141 Msa0276430:CDS 25.0%
!!! CTTTTTAGTCCATATGTTTT+GGG - chr2_3:8685123-8685142 Msa0276430:CDS 25.0%
TATTATATGGACAAAGCATG+GGG - chr2_3:8682359-8682378 Msa0276430:three_prime_UTR 30.0%
!!! GCTGTTTTGAAGGTAAAAAA+GGG + chr2_3:8682436-8682455 None:intergenic 30.0%
AATAGGAAACATTCTATCGT+TGG + chr2_3:8682474-8682493 None:intergenic 30.0%
TTGACAGGAAATCCTAAAAT+AGG + chr2_3:8682491-8682510 None:intergenic 30.0%
TAAGGAAGCTTACATTAACA+TGG + chr2_3:8682691-8682710 None:intergenic 30.0%
! TAATTACCTCATTTTCAGTG+TGG + chr2_3:8683204-8683223 None:intergenic 30.0%
TTCATGACATGTCAATTTAG+TGG - chr2_3:8683266-8683285 Msa0276430:intron 30.0%
CCAATCTGGCATATAATATA+AGG + chr2_3:8683521-8683540 None:intergenic 30.0%
CCTTATATTATATGCCAGAT+TGG - chr2_3:8683518-8683537 Msa0276430:intron 30.0%
GAGGAAATATGGACAAAAAA+TGG - chr2_3:8684035-8684054 Msa0276430:intron 30.0%
TATGGACAAAAAATGGCTAA+AGG - chr2_3:8684042-8684061 Msa0276430:intron 30.0%
! ATCTTGGTAACAACATATGA+AGG - chr2_3:8684372-8684391 Msa0276430:CDS 30.0%
TGAGATCTAATGTAACAGTA+GGG + chr2_3:8684581-8684600 None:intergenic 30.0%
!! CTTTGAAATTGCAATGGATT+TGG + chr2_3:8684618-8684637 None:intergenic 30.0%
AAACTAGGTACTTGATGAAA+TGG + chr2_3:8684654-8684673 None:intergenic 30.0%
ACTTTCCCATGTACAAAAAA+AGG + chr2_3:8685081-8685100 None:intergenic 30.0%
AATAGGAGAGAGTAAAGAGA+GGG + chr2_3:8682259-8682278 None:intergenic 35.0%
TGAGAGTGAGATATTGGAAT+TGG + chr2_3:8682413-8682432 None:intergenic 35.0%
!!! GGCTGTTTTGAAGGTAAAAA+AGG + chr2_3:8682437-8682456 None:intergenic 35.0%
TCGTTGGTATAAGTAGATGA+TGG + chr2_3:8682458-8682477 None:intergenic 35.0%
! AGAAAAGAAATCGACTTCAC+CGG + chr2_3:8682561-8682580 None:intergenic 35.0%
TTGTGTTCATTTGAAGGTGA+TGG + chr2_3:8682596-8682615 None:intergenic 35.0%
! TGTTGGTTGTGTTCATTTGA+AGG + chr2_3:8682602-8682621 None:intergenic 35.0%
ACATGGATATTAGAAGTGGA+AGG + chr2_3:8682674-8682693 None:intergenic 35.0%
TACTACAGATTGATCACTTC+CGG + chr2_3:8682852-8682871 None:intergenic 35.0%
GATCAATCTGTAGTAGATGA+TGG - chr2_3:8682857-8682876 Msa0276430:CDS 35.0%
TCATGTTACCGGTAATTACA+CGG - chr2_3:8683138-8683157 Msa0276430:CDS 35.0%
AGTATACTAACATCTCATGC+AGG + chr2_3:8683394-8683413 None:intergenic 35.0%
GGTTGTTAATGCAAAAACTG+AGG - chr2_3:8683575-8683594 Msa0276430:intron 35.0%
AAAACTGAGGAGAAAAACCA+AGG - chr2_3:8683588-8683607 Msa0276430:intron 35.0%
CCTATCTCAAGAAATTGTCT+TGG + chr2_3:8683633-8683652 None:intergenic 35.0%
CCAAGACAATTTCTTGAGAT+AGG - chr2_3:8683630-8683649 Msa0276430:CDS 35.0%
CTTGAGATAGGTACTACTAA+TGG - chr2_3:8683642-8683661 Msa0276430:CDS 35.0%
AGGAATAGCAATGGTAAAAC+TGG - chr2_3:8683738-8683757 Msa0276430:CDS 35.0%
ATAGCAATGGTAAAACTGGT+AGG - chr2_3:8683742-8683761 Msa0276430:CDS 35.0%
TAGCAATGGTAAAACTGGTA+GGG - chr2_3:8683743-8683762 Msa0276430:CDS 35.0%
ATTTGCTTGATCTGCAACAT+TGG + chr2_3:8683835-8683854 None:intergenic 35.0%
GGATAATTGCAGATAAGTGA+TGG - chr2_3:8684003-8684022 Msa0276430:intron 35.0%
TTTGTCCATATTTCCTCCAT+TGG + chr2_3:8684032-8684051 None:intergenic 35.0%
AGCATACTATAGATGCACTA+TGG - chr2_3:8684080-8684099 Msa0276430:intron 35.0%
TTAGTGACGAAATTGGAGAT+AGG - chr2_3:8684210-8684229 Msa0276430:intron 35.0%
!! TACCAAGATTGTTTTGTCCT+CGG + chr2_3:8684361-8684380 None:intergenic 35.0%
TCTAATGTAACAGTAGGGAA+TGG + chr2_3:8684576-8684595 None:intergenic 35.0%
GTGAGATCTAATGTAACAGT+AGG + chr2_3:8684582-8684601 None:intergenic 35.0%
!! TGAGGTCTTTGAAATTGCAA+TGG + chr2_3:8684624-8684643 None:intergenic 35.0%
CAAGTACCTAGTTTCTTTCA+AGG - chr2_3:8684660-8684679 Msa0276430:CDS 35.0%
TTCTGTCCTTGAAAGAAACT+AGG + chr2_3:8684669-8684688 None:intergenic 35.0%
CTTCAATTGTCTCAAGAAGT+TGG - chr2_3:8684744-8684763 Msa0276430:intron 35.0%
! GTTGTTGTTGTTGTTGTTGT+TGG + chr2_3:8684800-8684819 None:intergenic 35.0%
! TGTTGTTGCTATTGTTTGCA+TGG + chr2_3:8684932-8684951 None:intergenic 35.0%
AACAAGGAACCTAAGAACAA+AGG + chr2_3:8685016-8685035 None:intergenic 35.0%
!!! TCCATATGTTTTGGGATTGA+GGG - chr2_3:8685131-8685150 Msa0276430:exon 35.0%
GAATAGGAGAGAGTAAAGAG+AGG + chr2_3:8682260-8682279 None:intergenic 40.0%
AAAGGGTGAGAGTGAGATAT+TGG + chr2_3:8682419-8682438 None:intergenic 40.0%
!! GTAGATGATGGCTGTTTTGA+AGG + chr2_3:8682446-8682465 None:intergenic 40.0%
! AGAAGTGGAAGGCTTTTCAT+CGG + chr2_3:8682663-8682682 None:intergenic 40.0%
GGTTTACAACTTGCAAACAC+CGG - chr2_3:8682830-8682849 Msa0276430:CDS 40.0%
AATTGCAAGTGGAGCTTCAA+CGG - chr2_3:8683077-8683096 Msa0276430:CDS 40.0%
GAGATGCTAAGTCATGTTAC+CGG - chr2_3:8683127-8683146 Msa0276430:CDS 40.0%
GAATCACCACACTGAAAATG+AGG - chr2_3:8683195-8683214 Msa0276430:intron 40.0%
AGTCCAGAATCAGAAACACA+AGG - chr2_3:8683771-8683790 Msa0276430:CDS 40.0%
AGAATCAGAAACACAAGGCT+GGG - chr2_3:8683776-8683795 Msa0276430:CDS 40.0%
AATGAGAAAAGCTCGTGTCT+CGG - chr2_3:8683866-8683885 Msa0276430:CDS 40.0%
TGCTAGATCAGAAGCTTCAA+TGG - chr2_3:8683893-8683912 Msa0276430:CDS 40.0%
!! AGATAAGTGATGGATGCCAA+TGG - chr2_3:8684013-8684032 Msa0276430:intron 40.0%
TATAGATGCACTATGGCAGT+CGG - chr2_3:8684087-8684106 Msa0276430:intron 40.0%
AAACTCACTTGTTTGCGAAC+TGG + chr2_3:8684117-8684136 None:intergenic 40.0%
TCTACCTTGTTCAACAAGCA+TGG - chr2_3:8684530-8684549 Msa0276430:intron 40.0%
TGATGAAATGGTGCATGTTG+AGG + chr2_3:8684642-8684661 None:intergenic 40.0%
! TGTTGTTGTTGTTGTTGGCT+TGG + chr2_3:8684795-8684814 None:intergenic 40.0%
AACAGCGGTGAAATTAGGAT+CGG + chr2_3:8684874-8684893 None:intergenic 40.0%
!!! GTCCATATGTTTTGGGATTG+AGG - chr2_3:8685130-8685149 Msa0276430:exon 40.0%
!!! CCATATGTTTTGGGATTGAG+GGG - chr2_3:8685132-8685151 Msa0276430:exon 40.0%
AACCTTACCCGTAACACCAA+CGG - chr2_3:8682509-8682528 Msa0276430:CDS 45.0%
!! CGACTTCACCGGTTATTTTC+CGG + chr2_3:8682550-8682569 None:intergenic 45.0%
TAAACGCGCTAAGACTACTG+AGG - chr2_3:8682901-8682920 Msa0276430:CDS 45.0%
TCAGCTTGCACAATTGCAAG+TGG - chr2_3:8683066-8683085 Msa0276430:CDS 45.0%
CTGCAAAGCCGTGTAATTAC+CGG + chr2_3:8683149-8683168 None:intergenic 45.0%
GAGGAGAAAAACCAAGGTGT+TGG - chr2_3:8683594-8683613 Msa0276430:intron 45.0%
!! GAGAAAAACCAAGGTGTTGG+TGG - chr2_3:8683597-8683616 Msa0276430:CDS 45.0%
GATCAAACACACCTCAGATG+AGG - chr2_3:8683718-8683737 Msa0276430:CDS 45.0%
! CCATTGCTATTCCTCATCTG+AGG + chr2_3:8683732-8683751 None:intergenic 45.0%
CCTCAGATGAGGAATAGCAA+TGG - chr2_3:8683729-8683748 Msa0276430:CDS 45.0%
! CAGCCTTGTGTTTCTGATTC+TGG + chr2_3:8683777-8683796 None:intergenic 45.0%
CAGAATCAGAAACACAAGGC+TGG - chr2_3:8683775-8683794 Msa0276430:CDS 45.0%
GAATCAGAAACACAAGGCTG+GGG - chr2_3:8683777-8683796 Msa0276430:CDS 45.0%
!! TAAGTGATGGATGCCAATGG+AGG - chr2_3:8684016-8684035 Msa0276430:intron 45.0%
GGATGCCAATGGAGGAAATA+TGG - chr2_3:8684024-8684043 Msa0276430:intron 45.0%
CTATAGTATGCTCGAGGACA+TGG + chr2_3:8684072-8684091 None:intergenic 45.0%
GTGCATCTATAGTATGCTCG+AGG + chr2_3:8684078-8684097 None:intergenic 45.0%
TGCCGAGGACAAAACAATCT+TGG - chr2_3:8684356-8684375 Msa0276430:CDS 45.0%
GCAGCAAGCATGTTACTATC+AGG - chr2_3:8684453-8684472 Msa0276430:intron 45.0%
GGATCAATGTCAAGTGCAGA+TGG - chr2_3:8684474-8684493 Msa0276430:intron 45.0%
! GTTGCCATGCTTGTTGAACA+AGG + chr2_3:8684537-8684556 None:intergenic 45.0%
ACAGCCTTCTTTAGCTGACT+CGG - chr2_3:8684821-8684840 Msa0276430:CDS 45.0%
GCTGCTATCTCCTCCATTAT+TGG - chr2_3:8684900-8684919 Msa0276430:CDS 45.0%
GCTATCTCCTCCATTATTGG+TGG - chr2_3:8684903-8684922 Msa0276430:CDS 45.0%
ATCTCCTCCATTATTGGTGG+TGG - chr2_3:8684906-8684925 Msa0276430:CDS 45.0%
CCCCTCAATCCCAAAACATA+TGG + chr2_3:8685135-8685154 None:intergenic 45.0%
!! TTTGTTTATTATATATTATA+TGG - chr2_3:8682346-8682365 Msa0276430:three_prime_UTR 5.0%
GAGAGAGTAAAGAGAGGGAG+AGG + chr2_3:8682254-8682273 None:intergenic 50.0%
GTGTTACGGGTAAGGTTGAC+AGG + chr2_3:8682506-8682525 None:intergenic 50.0%
GGCTTTGCAGATGCAACTTG+TGG - chr2_3:8683159-8683178 Msa0276430:intron 50.0%
ATAGGTTCAACGTTGTGCCG+AGG - chr2_3:8684341-8684360 Msa0276430:CDS 50.0%
!! TAGCTGCTGGTGGTAATGGA+TGG + chr2_3:8684407-8684426 None:intergenic 50.0%
TCCATTACCACCAGCAGCTA+TGG - chr2_3:8684407-8684426 Msa0276430:CDS 50.0%
! TAACATGCTTGCTGCTGCTG+AGG + chr2_3:8684448-8684467 None:intergenic 50.0%
!! TTGTTGGCTTGGAGCTTGTG+TGG + chr2_3:8684784-8684803 None:intergenic 50.0%
GAGTCAGCTAAAGAAGGCTG+TGG + chr2_3:8684822-8684841 None:intergenic 50.0%
CTGACCGAGTCAGCTAAAGA+AGG + chr2_3:8684828-8684847 None:intergenic 50.0%
AGCGGTGAAATTAGGATCGG+CGG + chr2_3:8684871-8684890 None:intergenic 50.0%
GCGAGAACAGCGGTGAAATT+AGG + chr2_3:8684879-8684898 None:intergenic 50.0%
ATGGCCACCACCAATAATGG+AGG + chr2_3:8684913-8684932 None:intergenic 50.0%
TGCATGGCCACCACCAATAA+TGG + chr2_3:8684916-8684935 None:intergenic 50.0%
!! GTCTTCGCCGTTGGTGTTAC+GGG + chr2_3:8682519-8682538 None:intergenic 55.0%
!! CGTCTTCGCCGTTGGTGTTA+CGG + chr2_3:8682520-8682539 None:intergenic 55.0%
CGTAACACCAACGGCGAAGA+CGG - chr2_3:8682518-8682537 Msa0276430:CDS 55.0%
GGCGGTGACCGGAAAATAAC+CGG - chr2_3:8682539-8682558 Msa0276430:CDS 55.0%
CCATTGCTCCACCAACACCT+TGG + chr2_3:8683608-8683627 None:intergenic 55.0%
!! CCAAGGTGTTGGTGGAGCAA+TGG - chr2_3:8683605-8683624 Msa0276430:CDS 55.0%
GCCATAGCTGCTGGTGGTAA+TGG + chr2_3:8684411-8684430 None:intergenic 55.0%
ACCACCAGCAGCTATGGCAA+TGG - chr2_3:8684413-8684432 Msa0276430:CDS 55.0%
GATGCCATTGCCATAGCTGC+TGG + chr2_3:8684420-8684439 None:intergenic 55.0%
GATAGCAGCTGCGAGAACAG+CGG + chr2_3:8684889-8684908 None:intergenic 55.0%
!! CGCCGTTGGTGTTACGGGTA+AGG + chr2_3:8682514-8682533 None:intergenic 60.0%
AACACCAACGGCGAAGACGG+CGG - chr2_3:8682521-8682540 Msa0276430:CDS 60.0%
GCCATTGCCATAGCTGCTGG+TGG + chr2_3:8684417-8684436 None:intergenic 60.0%
AGGATCGGCGGTGATAGCAG+CGG + chr2_3:8684859-8684878 None:intergenic 60.0%
ATCGGCGGTGATAGCAGCGG+TGG + chr2_3:8684856-8684875 None:intergenic 65.0%
GTCACCGCCGTCTTCGCCGT+TGG + chr2_3:8682528-8682547 None:intergenic 70.0%
ACGGCGAAGACGGCGGTGAC+CGG - chr2_3:8682528-8682547 Msa0276430:CDS 70.0%
GGCGGTGATAGCAGCGGTGG+CGG + chr2_3:8684853-8684872 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 8682247 8685264 8682247 ID=Msa0276430;Name=Msa0276430
chr2_3 mRNA 8682247 8685264 8682247 ID=Msa0276430-mRNA-1;Parent=Msa0276430;Name=Msa0276430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=118|1|1|1|1|1|6|257|563
chr2_3 exon 8682247 8683166 8682247 ID=Msa0276430-mRNA-1:exon:3898;Parent=Msa0276430-mRNA-1
chr2_3 exon 8683383 8683496 8683383 ID=Msa0276430-mRNA-1:exon:3897;Parent=Msa0276430-mRNA-1
chr2_3 exon 8683597 8683935 8683597 ID=Msa0276430-mRNA-1:exon:3896;Parent=Msa0276430-mRNA-1
chr2_3 exon 8684295 8684441 8684295 ID=Msa0276430-mRNA-1:exon:3895;Parent=Msa0276430-mRNA-1
chr2_3 exon 8684589 8684684 8684589 ID=Msa0276430-mRNA-1:exon:3894;Parent=Msa0276430-mRNA-1
chr2_3 exon 8684814 8685264 8684814 ID=Msa0276430-mRNA-1:exon:3893;Parent=Msa0276430-mRNA-1
chr2_3 five_prime_UTR 8685147 8685264 8685147 ID=Msa0276430-mRNA-1:five_prime_utr;Parent=Msa0276430-mRNA-1
chr2_3 CDS 8684814 8685146 8684814 ID=Msa0276430-mRNA-1:cds;Parent=Msa0276430-mRNA-1
chr2_3 CDS 8684589 8684684 8684589 ID=Msa0276430-mRNA-1:cds;Parent=Msa0276430-mRNA-1
chr2_3 CDS 8684295 8684441 8684295 ID=Msa0276430-mRNA-1:cds;Parent=Msa0276430-mRNA-1
chr2_3 CDS 8683597 8683935 8683597 ID=Msa0276430-mRNA-1:cds;Parent=Msa0276430-mRNA-1
chr2_3 CDS 8683383 8683496 8683383 ID=Msa0276430-mRNA-1:cds;Parent=Msa0276430-mRNA-1
chr2_3 CDS 8682504 8683166 8682504 ID=Msa0276430-mRNA-1:cds;Parent=Msa0276430-mRNA-1
chr2_3 three_prime_UTR 8682247 8682503 8682247 ID=Msa0276430-mRNA-1:three_prime_utr;Parent=Msa0276430-mRNA-1
Gene Sequence

>Msa0276430

ATGGACAAAGCATGGGGTCTAGCTCTTGATACTTCTTCATCTTCTCCAATTCCAATATCTCACTCTCACCCTTTTTTACCTTCAAAACAGCCATCATCTACTTATACCAACGATAGAATGTTTCCTATTTTAGGATTTCCTGTCAACCTTACCCGTAACACCAACGGCGAAGACGGCGGTGACCGGAAAATAACCGGTGAAGTCGATTTCTTTTCTGAAAGAAACAAACCATCACCTTCAAATGAACACAACCAACATGTTAAATCCAATATCATCAAAAAGGAGATTGTTTCAACCGATGAAAAGCCTTCCACTTCTAATATCCATGTTAATACTGGTTTACAACTTGCAAACACCGGAAGTGATCAATCTGTAGTAGATGATGGAGTTTCATCTGATGCTGAAAATAAACGCGCTAAGACTACTGAGCTTGCACAATTGCAAGTGGAGCTTCAACGGATGAATTCAGAGAACAAAAAGCTGAAAGAGATGCTAAGTCATGTTACCGGTAATTACACGGCTTTGCAGATGCAACTTGTGGCATTAATGCAAAAGAATCACCACACTGAAAATGAGGTTGTTAATGCAAAAACTGAGGAGAAAAACCAAGGTGTTGGTGGAGCAATGGTACCAAGACAATTTCTTGAGATAGGTACTACTAATGGAACAGCAGAAGTTGAAGATCAAGTATCAAACTCATCATCTGATGAAAGAACAAGATCAAACACACCTCAGATGAGGAATAGCAATGGTAAAACTGGTAGGGAAGACAGTCCAGAATCAGAAACACAAGGCTGGGGACCAAACAAGTCTCAGAAAATATTGAACTCTTCCAATGTTGCAGATCAAGCAAATACAGAAGCTACAATGAGAAAAGCTCGTGTCTCGGTTCGTGCTAGATCAGAAGCTTCAATGATAAGTGATGGATGCCAATGGAGGAAATATGGACAAAAAATGGCTAAAGGAAATCCATGTCCTCGAGCATACTATAGATGCACTATGGCAGTCGGTTGTCCAGTTCGCAAACAAGTTCAACGTTGTGCCGAGGACAAAACAATCTTGGTAACAACATATGAAGGAACACATAACCATCCATTACCACCAGCAGCTATGGCAATGGCATCAACAACCTCAGCAGCAGCAAGCATGTTACTATCAGGATCAATGTCAAGTGCAGATGGAATAATGACACCAAATTTATTAGCAAGAGCTATTCTACCTTGTTCAACAAGCATGGCAACACTTTCAGCTTCAGCACCATTCCCTACTGTTACATTAGATCTCACACAAAATTCAAACCCAAATCCATTGCAATTTCAAAGACCTCAACATGCACCATTTCATCAAGTACCTAGTTTCTTTCAAGGACAGAATCAGAATTTTGCACAAGCAGCAGCATCACTTTATAATCAGTCAAAATTTTCTGGTCTTCAATTGTCTCAAGAAGTTGGTTCTTCTCATTTAACCACACAAGCTCCAAGCCAACAACAACAACAACAACAACCACAGCCTTCTTTAGCTGACTCGGTCAGCGCCGCCACCGCTGCTATCACCGCCGATCCTAATTTCACCGCTGTTCTCGCAGCTGCTATCTCCTCCATTATTGGTGGTGGCCATGCAAACAATAGCAACAACAGCAACAACAACAACAGCAATAGCAGAAATACAATTAGCAACTTTTCAGGAAACTAA
Protein sequence

>Msa0276430

MDKAWGLALDTSSSSPIPISHSHPFLPSKQPSSTYTNDRMFPILGFPVNLTRNTNGEDGGDRKITGEVDFFSERNKPSPSNEHNQHVKSNIIKKEIVSTDEKPSTSNIHVNTGLQLANTGSDQSVVDDGVSSDAENKRAKTTELAQLQVELQRMNSENKKLKEMLSHVTGNYTALQMQLVALMQKNHHTENEVVNAKTEEKNQGVGGAMVPRQFLEIGTTNGTAEVEDQVSNSSSDERTRSNTPQMRNSNGKTGREDSPESETQGWGPNKSQKILNSSNVADQANTEATMRKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILVTTYEGTHNHPLPPAAMAMASTTSAAASMLLSGSMSSADGIMTPNLLARAILPCSTSMATLSASAPFPTVTLDLTQNSNPNPLQFQRPQHAPFHQVPSFFQGQNQNFAQAAASLYNQSKFSGLQLSQEVGSSHLTTQAPSQQQQQQQPQPSLADSVSAATAAITADPNFTAVLAAAISSIIGGGHANNSNNSNNNNSNSRNTISNFSGN*