Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215680 | sp|Q9FZP1|HPSE3_ARATH | 62.109 | 512 | 176 | 3 | 35 | 528 | 25 | 536 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215680 | G7JGL1 | 94.340 | 530 | 27 | 2 | 1 | 528 | 1 | 529 | 0.0 | 1008 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0301820 | Msa1215680 | 0.801640 | 8.186217e-49 | -8.615850e-47 |
| Msa1215680 | Msa1332360 | 0.996098 | 2.217475e-223 | -8.615850e-47 |
| Msa1215680 | Msa1333820 | 0.981910 | 9.397134e-154 | -8.615850e-47 |
| Msa1215680 | Msa1448390 | 0.965788 | 4.624345e-125 | -8.615850e-47 |
| Msa0495300 | Msa1215680 | 0.831719 | 1.423435e-55 | -8.615850e-47 |
| Msa0508180 | Msa1215680 | 0.806430 | 8.255889e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215680 | MtrunA17_Chr4g0064851 | 94.340 | 530 | 27 | 2 | 1 | 528 | 1 | 529 | 0.0 | 1008 |
| Msa1215680 | MtrunA17_Chr2g0304251 | 64.880 | 541 | 171 | 5 | 1 | 527 | 1 | 536 | 0.0 | 714 |
| Msa1215680 | MtrunA17_Chr3g0086241 | 47.706 | 545 | 253 | 9 | 14 | 528 | 1 | 543 | 7.69e-173 | 499 |
| Msa1215680 | MtrunA17_Chr3g0086271 | 49.023 | 512 | 253 | 5 | 21 | 528 | 8 | 515 | 8.02e-173 | 498 |
| Msa1215680 | MtrunA17_Chr3g0086291 | 50.302 | 497 | 236 | 6 | 39 | 528 | 25 | 517 | 8.17e-173 | 498 |
| Msa1215680 | MtrunA17_Chr4g0061271 | 48.069 | 518 | 240 | 5 | 39 | 527 | 25 | 542 | 2.28e-166 | 482 |
| Msa1215680 | MtrunA17_Chr3g0086251 | 48.362 | 519 | 259 | 7 | 14 | 528 | 111 | 624 | 7.33e-165 | 481 |
| Msa1215680 | MtrunA17_Chr5g0418671 | 45.769 | 520 | 257 | 5 | 11 | 527 | 6 | 503 | 4.66e-163 | 472 |
| Msa1215680 | MtrunA17_Chr4g0064821 | 67.544 | 228 | 60 | 3 | 168 | 395 | 3 | 216 | 2.88e-103 | 309 |
| Msa1215680 | MtrunA17_Chr4g0064811 | 74.257 | 101 | 25 | 1 | 428 | 528 | 1 | 100 | 6.95e-44 | 150 |
| Msa1215680 | MtrunA17_Chr8g0383141 | 69.697 | 99 | 17 | 2 | 406 | 499 | 10 | 100 | 6.55e-38 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1215680 | AT5G34940.2 | 62.109 | 512 | 176 | 3 | 35 | 528 | 25 | 536 | 0.0 | 678 |
| Msa1215680 | AT5G34940.1 | 60.848 | 401 | 141 | 2 | 144 | 528 | 1 | 401 | 0.0 | 515 |
| Msa1215680 | AT5G34940.3 | 63.585 | 357 | 128 | 1 | 35 | 389 | 25 | 381 | 8.50e-174 | 495 |
| Msa1215680 | AT5G61250.3 | 46.887 | 514 | 250 | 3 | 38 | 528 | 26 | 539 | 2.60e-173 | 500 |
| Msa1215680 | AT5G61250.1 | 46.887 | 514 | 250 | 3 | 38 | 528 | 26 | 539 | 2.60e-173 | 500 |
| Msa1215680 | AT5G61250.2 | 46.887 | 514 | 250 | 3 | 38 | 528 | 26 | 539 | 2.60e-173 | 500 |
| Msa1215680 | AT5G07830.1 | 47.379 | 515 | 247 | 4 | 38 | 528 | 29 | 543 | 3.84e-171 | 494 |
| Msa1215680 | AT5G34940.4 | 59.732 | 298 | 104 | 2 | 247 | 528 | 2 | 299 | 1.09e-127 | 375 |
Find 147 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATACTGTTTCTCAATT+TGG | 0.117308 | 8_1:-77004423 | Msa1215680:CDS |
| TTCAGGGTTAATGTTATATT+TGG | 0.120242 | 8_1:-77006014 | Msa1215680:intron |
| CTTTGAGGCAAATTGGTTTA+AGG | 0.149506 | 8_1:-77005437 | Msa1215680:CDS |
| AATCAAAGTTAAGATCTTTA+TGG | 0.167612 | 8_1:+77006935 | None:intergenic |
| TGGTTTCTTGGCAAAATTTA+AGG | 0.174708 | 8_1:+77004370 | None:intergenic |
| TTCCATCCTTTGCTGTTAAA+TGG | 0.200876 | 8_1:+77004309 | None:intergenic |
| TGAAATTGACTTGAGCATTA+TGG | 0.213019 | 8_1:+77003851 | None:intergenic |
| CTCAATCCATCCTCTCTTAA+TGG | 0.220707 | 8_1:-77005231 | Msa1215680:CDS |
| GAAAGAGGCCTAACTGTTAT+TGG | 0.228064 | 8_1:+77004185 | None:intergenic |
| TCACATCAAATACAGGTATT+TGG | 0.232373 | 8_1:-77004999 | Msa1215680:intron |
| TGGTGAAGCAGGAGGGGCTT+GGG | 0.234159 | 8_1:-77005139 | Msa1215680:CDS |
| TTGGTGAAGCAGGAGGGGCT+TGG | 0.270000 | 8_1:-77005140 | Msa1215680:CDS |
| AGTACTGTTGTTAGATTGTT+TGG | 0.273075 | 8_1:-77004028 | Msa1215680:three_prime_UTR |
| TTTCTTACAGTGCTCTTCTT+TGG | 0.278856 | 8_1:-77004650 | Msa1215680:intron |
| AGCCAAACTATGGTACTAAA+TGG | 0.279353 | 8_1:-77004278 | Msa1215680:CDS |
| GGTGCAATGATTAGTGGTTT+TGG | 0.286816 | 8_1:+77005469 | None:intergenic |
| TGCCAAATCCAGATTATTAT+AGG | 0.288593 | 8_1:-77004880 | Msa1215680:intron |
| TCATGCTTCTCTTCTTAATC+TGG | 0.289299 | 8_1:-77006671 | Msa1215680:intron |
| TTGAAAGAAAATGTTAAGTT+TGG | 0.289585 | 8_1:-77006249 | Msa1215680:CDS |
| ACTATTCATGGTTGGGAATT+CGG | 0.306619 | 8_1:-77005882 | Msa1215680:intron |
| ATTATGAGTGGATGGTTTCT+TGG | 0.311113 | 8_1:+77004358 | None:intergenic |
| GAGGCTTCTTTGAGGCAAAT+TGG | 0.311182 | 8_1:-77005444 | Msa1215680:CDS |
| ATGCATTTGTCAACAGCTTT+TGG | 0.315595 | 8_1:-77005092 | Msa1215680:intron |
| GATCTTCTTTGTTCCATAGA+AGG | 0.319416 | 8_1:+77004593 | None:intergenic |
| TACCTATAATAATCTGGATT+TGG | 0.319672 | 8_1:+77004878 | None:intergenic |
| TTTGAAGAATCAACATATAT+AGG | 0.336227 | 8_1:+77004209 | None:intergenic |
| GTCCTGTCAGCTACCTTCTA+TGG | 0.336646 | 8_1:-77004606 | Msa1215680:CDS |
| GCAAAGAAATACACTATTCA+TGG | 0.338392 | 8_1:-77005894 | Msa1215680:CDS |
| TTCACCCTTGAAAATTAGAT+TGG | 0.343603 | 8_1:-77006340 | Msa1215680:CDS |
| AGCTTCAGTTTCAGCTTCAT+TGG | 0.343969 | 8_1:-77006850 | Msa1215680:CDS |
| TATGTTGCTGGCAAAGTATT+TGG | 0.347927 | 8_1:+77007124 | None:intergenic |
| TTCCATTTAGTACCATAGTT+TGG | 0.352865 | 8_1:+77004276 | None:intergenic |
| GCAGGAGGGGCTTGGGGTAG+TGG | 0.353714 | 8_1:-77005132 | Msa1215680:CDS |
| GGTGAAGCAGGAGGGGCTTG+GGG | 0.361184 | 8_1:-77005138 | Msa1215680:CDS |
| TTTGGATTAAATGCTCTTGC+TGG | 0.367787 | 8_1:-77005996 | Msa1215680:CDS |
| GGAGTGAATTGCATAGGATT+AGG | 0.368336 | 8_1:-77006829 | Msa1215680:CDS |
| CTTGGCATGTCAGCTACTTA+TGG | 0.369847 | 8_1:-77004971 | Msa1215680:CDS |
| TTGGGGTAGTGGTCATCATC+TGG | 0.378614 | 8_1:-77005121 | Msa1215680:CDS |
| GCAAAACCAATCAAAATCCT+AGG | 0.406941 | 8_1:+77003995 | None:intergenic |
| TCTTCTTTGGCACCGACTCA+TGG | 0.408072 | 8_1:-77004637 | Msa1215680:CDS |
| TTGCAAGATAAAGTCACATA+TGG | 0.412733 | 8_1:-77006309 | Msa1215680:CDS |
| CTTCAAAGCCAATAACAGTT+AGG | 0.413217 | 8_1:-77004193 | Msa1215680:CDS |
| TAAGGAATTCTTAAACAAAT+CGG | 0.416402 | 8_1:-77005419 | Msa1215680:CDS |
| CCTCCAGGTGCAATGATTAG+TGG | 0.427861 | 8_1:+77005463 | None:intergenic |
| AAAGGGGTTGTTGTCATTCA+TGG | 0.428197 | 8_1:-77006790 | Msa1215680:CDS |
| ACTTTGATAGGAGGAAACTA+TGG | 0.437840 | 8_1:-77004926 | Msa1215680:CDS |
| CAGTTTCATGTGTATGTTGC+TGG | 0.438814 | 8_1:+77007112 | None:intergenic |
| CAAGCATGGGTTGGTGAAGC+AGG | 0.449167 | 8_1:-77005150 | Msa1215680:CDS |
| CAAGCTTTAACAGCAGCATC+TGG | 0.449403 | 8_1:+77004143 | None:intergenic |
| GAATTGTGTGGAGCTGGAAC+TGG | 0.449638 | 8_1:-77005574 | Msa1215680:CDS |
| GAAATACACTATTCATGGTT+GGG | 0.449995 | 8_1:-77005889 | Msa1215680:CDS |
| AGAGTTCTGCTGTTGGACCT+TGG | 0.450053 | 8_1:-77005956 | Msa1215680:CDS |
| AAATTTACATAGCCAAACTA+TGG | 0.453369 | 8_1:-77004288 | Msa1215680:CDS |
| GGCAAAATTTAAGGCCACTC+TGG | 0.454518 | 8_1:+77004379 | None:intergenic |
| TTGCAGCTAGCTTAGCTCAA+TGG | 0.455259 | 8_1:-77004123 | Msa1215680:exon |
| ACCCACCACATTTATAACCT+TGG | 0.456246 | 8_1:-77005376 | Msa1215680:CDS |
| CTTACATACAGGAGGTGATC+CGG | 0.457971 | 8_1:-77005271 | Msa1215680:intron |
| AAGGTCCAACAGCAGAACTC+TGG | 0.458755 | 8_1:+77005958 | None:intergenic |
| TGCACCTGGAGGCTTCTTTG+AGG | 0.459194 | 8_1:-77005452 | Msa1215680:CDS |
| CACTAGGCTAAACCGAAAAT+CGG | 0.461119 | 8_1:-77004100 | Msa1215680:three_prime_UTR |
| AGCTCATCCCATCTTTGCAT+TGG | 0.461356 | 8_1:+77006207 | None:intergenic |
| AATGAACTGAATAGTGCATT+GGG | 0.465084 | 8_1:+77003967 | None:intergenic |
| GTTAAGTTTGGTTTCACTCA+AGG | 0.468571 | 8_1:-77006237 | Msa1215680:CDS |
| TTGTTTGTGCAACTATTGAT+TGG | 0.469018 | 8_1:-77006735 | Msa1215680:CDS |
| GAAATGATTCAGCTGTGAAA+GGG | 0.471866 | 8_1:-77006807 | Msa1215680:CDS |
| GGTGCTTACCAATGCAAAGA+TGG | 0.475234 | 8_1:-77006215 | Msa1215680:CDS |
| GAATCCCAGAGTTCTGCTGT+TGG | 0.478372 | 8_1:-77005963 | Msa1215680:CDS |
| TCACCCTTGAAAATTAGATT+GGG | 0.483289 | 8_1:-77006339 | Msa1215680:CDS |
| TACTGCAGACAGACTTTGAT+AGG | 0.485428 | 8_1:-77004938 | Msa1215680:CDS |
| TTCAAAACAAATGGAGTACA+AGG | 0.488925 | 8_1:+77006267 | None:intergenic |
| TAATGAACTGAATAGTGCAT+TGG | 0.488937 | 8_1:+77003966 | None:intergenic |
| TGACTGGGGAAGATGCAGTT+GGG | 0.489900 | 8_1:-77006695 | Msa1215680:CDS |
| AACCGAAAATCGGTTTCCCT+TGG | 0.491824 | 8_1:-77004090 | Msa1215680:three_prime_UTR |
| AGAAATACACTATTCATGGT+TGG | 0.494288 | 8_1:-77005890 | Msa1215680:CDS |
| CTTCTTTGGCACCGACTCAT+GGG | 0.495122 | 8_1:-77004636 | Msa1215680:CDS |
| CCCTTGAAAATTAGATTGGG+TGG | 0.504477 | 8_1:-77006336 | Msa1215680:CDS |
| GACATTCAGTTTCTTGCCTT+AGG | 0.513469 | 8_1:-77003910 | Msa1215680:three_prime_UTR |
| AGAATTCTTTCAACTAAGCC+CGG | 0.517400 | 8_1:+77005252 | None:intergenic |
| TGAGCAAATACAATAGAAAG+AGG | 0.518407 | 8_1:+77004170 | None:intergenic |
| CCCCAGTCACATTTCTGAGG+TGG | 0.522444 | 8_1:+77006709 | None:intergenic |
| TTACATACAGGAGGTGATCC+GGG | 0.524148 | 8_1:-77005270 | Msa1215680:intron |
| CACATTTATAACCTTGGACC+AGG | 0.527860 | 8_1:-77005370 | Msa1215680:intron |
| CAAGAACCTCAGCTCAAGCA+TGG | 0.529412 | 8_1:-77005164 | Msa1215680:CDS |
| GGTAATGAATTGTGTGGAGC+TGG | 0.529444 | 8_1:-77005580 | Msa1215680:CDS |
| TCTCCCACATTATGAGTGGA+TGG | 0.529610 | 8_1:+77004350 | None:intergenic |
| ATATGTGACTTTATCTTGCA+AGG | 0.529864 | 8_1:+77006311 | None:intergenic |
| TTACTCTGCTGTAGTAGCAG+AGG | 0.530971 | 8_1:+77007013 | None:intergenic |
| TACAGGTATTTGGATCAGCT+TGG | 0.531719 | 8_1:-77004989 | Msa1215680:intron |
| TTTGTGCAACTATTGATTGG+TGG | 0.534149 | 8_1:-77006732 | Msa1215680:CDS |
| GGAAATGATTCAGCTGTGAA+AGG | 0.534369 | 8_1:-77006808 | Msa1215680:CDS |
| TTAAGTTTGGTTTCACTCAA+GGG | 0.534562 | 8_1:-77006236 | Msa1215680:CDS |
| CTGTTGTTAGATTGTTTGGA+GGG | 0.536590 | 8_1:-77004024 | Msa1215680:three_prime_UTR |
| GCCACTCCATTAAGAGAGGA+TGG | 0.540608 | 8_1:+77005225 | None:intergenic |
| AGGTCCAACAGCAGAACTCT+GGG | 0.540823 | 8_1:+77005959 | None:intergenic |
| GCATGGGTTGGTGAAGCAGG+AGG | 0.541025 | 8_1:-77005147 | Msa1215680:CDS |
| CATGGGTTGGTGAAGCAGGA+GGG | 0.543776 | 8_1:-77005146 | Msa1215680:CDS |
| TTCCATAGAAGGTAGCTGAC+AGG | 0.546554 | 8_1:+77004604 | None:intergenic |
| CAAAACCAATCAAAATCCTA+GGG | 0.547371 | 8_1:+77003996 | None:intergenic |
| TGTTTGGAGGGCGAAGCCCT+AGG | 0.554563 | 8_1:-77004012 | Msa1215680:three_prime_UTR |
| TTCATTGGAGTGAATTGCAT+AGG | 0.557031 | 8_1:-77006835 | Msa1215680:CDS |
| AGAAAACGACTCACTACCTA+AGG | 0.557890 | 8_1:+77003894 | None:intergenic |
| GTTGGAACATACCTGGTCCA+AGG | 0.558530 | 8_1:+77005359 | None:intergenic |
| ATTCTAAGTGTAGATTCAGC+TGG | 0.564761 | 8_1:-77004251 | Msa1215680:CDS |
| GTGGTGGGTGACCACATTTG+TGG | 0.567042 | 8_1:+77005390 | None:intergenic |
| TGCAAGATAAAGTCACATAT+GGG | 0.568227 | 8_1:-77006308 | Msa1215680:CDS |
| TACCATTTAACAGCAAAGGA+TGG | 0.568356 | 8_1:-77004311 | Msa1215680:CDS |
| TAGCTTAGCTCAATGGCACT+AGG | 0.569559 | 8_1:-77004116 | Msa1215680:three_prime_UTR |
| GTGACTGGGGAAGATGCAGT+TGG | 0.570547 | 8_1:-77006696 | Msa1215680:CDS |
| ACCTCAGCTCAAGCATGGGT+TGG | 0.570704 | 8_1:-77005159 | Msa1215680:CDS |
| GAAACCATCCACTCATAATG+TGG | 0.570906 | 8_1:-77004354 | Msa1215680:CDS |
| CTTCCCCAGTCACATTTCTG+AGG | 0.574209 | 8_1:+77006706 | None:intergenic |
| TTTGCCTCAAAGAAGCCTCC+AGG | 0.578642 | 8_1:+77005448 | None:intergenic |
| GTGCTTACCAATGCAAAGAT+GGG | 0.579091 | 8_1:-77006214 | Msa1215680:CDS |
| TAGTTCAGGCTGTATATCGA+AGG | 0.579271 | 8_1:-77005498 | Msa1215680:CDS |
| ACCAACCCATGCTTGAGCTG+AGG | 0.583418 | 8_1:+77005158 | None:intergenic |
| ACTGTTGTTAGATTGTTTGG+AGG | 0.583547 | 8_1:-77004025 | Msa1215680:three_prime_UTR |
| AGAGTACCATTTAACAGCAA+AGG | 0.585879 | 8_1:-77004315 | Msa1215680:CDS |
| GCCACCTCAGAAATGTGACT+GGG | 0.585883 | 8_1:-77006710 | Msa1215680:CDS |
| GGCCACTCTGGCTTGAACAG+TGG | 0.589150 | 8_1:+77004391 | None:intergenic |
| ATGGGTTGGTGAAGCAGGAG+GGG | 0.589189 | 8_1:-77005145 | Msa1215680:CDS |
| TGATTCTCCCACATTATGAG+TGG | 0.591100 | 8_1:+77004346 | None:intergenic |
| GGCCACCTCAGAAATGTGAC+TGG | 0.592338 | 8_1:-77006711 | Msa1215680:CDS |
| TCCATCCTCTCTTAATGGAG+TGG | 0.595996 | 8_1:-77005226 | Msa1215680:CDS |
| AAGAACCTCAGCTCAAGCAT+GGG | 0.599111 | 8_1:-77005163 | Msa1215680:CDS |
| GTCCAAGGTTATAAATGTGG+TGG | 0.600899 | 8_1:+77005374 | None:intergenic |
| CTTTGGCACCGACTCATGGG+AGG | 0.606750 | 8_1:-77004633 | Msa1215680:CDS |
| CTGGTCCAAGGTTATAAATG+TGG | 0.608301 | 8_1:+77005371 | None:intergenic |
| AACTTATGCACATTGTGCAA+AGG | 0.615463 | 8_1:-77004568 | Msa1215680:CDS |
| AAACCATCCACTCATAATGT+GGG | 0.621064 | 8_1:-77004353 | Msa1215680:CDS |
| AAACCACTAATCATTGCACC+TGG | 0.631010 | 8_1:-77005466 | Msa1215680:CDS |
| GACTGGGGAAGATGCAGTTG+GGG | 0.631756 | 8_1:-77006694 | Msa1215680:CDS |
| GTCAGCCACTCCATTAAGAG+AGG | 0.631825 | 8_1:+77005221 | None:intergenic |
| AAATGATTCAGCTGTGAAAG+GGG | 0.633658 | 8_1:-77006806 | Msa1215680:CDS |
| TGGATTTGGCATGAAAGTAG+TGG | 0.636768 | 8_1:+77004892 | None:intergenic |
| AGTTCAGGCTGTATATCGAA+GGG | 0.638931 | 8_1:-77005497 | Msa1215680:CDS |
| TCGGCATTAGTGTAGTTCCA+AGG | 0.645458 | 8_1:+77005939 | None:intergenic |
| ATCGGACGAATCCACAAATG+TGG | 0.653324 | 8_1:-77005401 | Msa1215680:CDS |
| TGCAGACAGACTTTGATAGG+AGG | 0.655417 | 8_1:-77004935 | Msa1215680:CDS |
| CACCACTGTTCAAGCCAGAG+TGG | 0.656315 | 8_1:-77004393 | Msa1215680:CDS |
| AGTATAACGTATAAAAGACT+CGG | 0.661223 | 8_1:+77005920 | None:intergenic |
| GGAAGTTGTTACAAGTACAA+TGG | 0.661737 | 8_1:+77007070 | None:intergenic |
| TGGACAGGTAATGAATTGTG+TGG | 0.666362 | 8_1:-77005586 | Msa1215680:intron |
| GGACACGTCCTCCCATGAGT+CGG | 0.680945 | 8_1:+77004625 | None:intergenic |
| CCACTAATCATTGCACCTGG+AGG | 0.683993 | 8_1:-77005463 | Msa1215680:CDS |
| TCCAAGGTTATAAATGTGGT+GGG | 0.685319 | 8_1:+77005375 | None:intergenic |
| ACATATATAGGATTCAGTGA+AGG | 0.688369 | 8_1:+77004221 | None:intergenic |
| CCACCTCAGAAATGTGACTG+GGG | 0.716848 | 8_1:-77006709 | Msa1215680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATGTTTCATTTA+TGG | - | chr8_1:77004373-77004392 | Msa1215680:CDS | 10.0% |
| !! | TTATTATGAAAATAAATAAC+AGG | + | chr8_1:77004551-77004570 | None:intergenic | 10.0% |
| !!! | ATTTTGTTAAATGCAATAAA+AGG | - | chr8_1:77004507-77004526 | Msa1215680:intron | 15.0% |
| !!! | TATATATTTGCAGTTATTTT+TGG | - | chr8_1:77005335-77005354 | Msa1215680:intron | 15.0% |
| !! | CAATTAATATTCAACTAATT+CGG | - | chr8_1:77006171-77006190 | Msa1215680:intron | 15.0% |
| !! | ATTTATGAATTTACTTCAAA+CGG | + | chr8_1:77006271-77006290 | None:intergenic | 15.0% |
| !!! | CTTTATGGTTTTTCATAAAT+GGG | + | chr8_1:77004035-77004054 | None:intergenic | 20.0% |
| !!! | TCTTTATGGTTTTTCATAAA+TGG | + | chr8_1:77004036-77004055 | None:intergenic | 20.0% |
| !! | AATCAAAGTTAAGATCTTTA+TGG | + | chr8_1:77004050-77004069 | None:intergenic | 20.0% |
| !!! | TCTTAACTTTGATTGATTTT+AGG | - | chr8_1:77004056-77004075 | Msa1215680:three_prime_UTR | 20.0% |
| !!! | TTTGATTGATTTTAGGAAAT+GGG | - | chr8_1:77004063-77004082 | Msa1215680:three_prime_UTR | 20.0% |
| !!! | TTAACAAAATTTTGTTGTTG+AGG | + | chr8_1:77004497-77004516 | None:intergenic | 20.0% |
| !!! | ACATTTTCTTTCAAAACAAA+TGG | + | chr8_1:77004727-77004746 | None:intergenic | 20.0% |
| !! | TTGAAAGAAAATGTTAAGTT+TGG | - | chr8_1:77004733-77004752 | Msa1215680:intron | 20.0% |
| !!! | TGTTTTTTGATAACTCTAAA+GGG | + | chr8_1:77004843-77004862 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTGATAACTCTAA+AGG | + | chr8_1:77004844-77004863 | None:intergenic | 20.0% |
| !! | CCAAATTATAAAAGTTGAAT+CGG | + | chr8_1:77004905-77004924 | None:intergenic | 20.0% |
| !!! | TATATTGACATTTTTAACGA+AGG | + | chr8_1:77005139-77005158 | None:intergenic | 20.0% |
| !! | CGTTAAAAATGTCAATATAT+TGG | - | chr8_1:77005140-77005159 | Msa1215680:CDS | 20.0% |
| !! | TTAGACTGAAAATCAAAAAA+TGG | - | chr8_1:77005168-77005187 | Msa1215680:CDS | 20.0% |
| !!! | AAATTTAATTTGTTGACCAA+TGG | + | chr8_1:77005268-77005287 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTAAAAGGAAAAT+AGG | - | chr8_1:77005351-77005370 | Msa1215680:intron | 20.0% |
| !! | TAAGGAATTCTTAAACAAAT+CGG | - | chr8_1:77005563-77005582 | Msa1215680:CDS | 20.0% |
| !! | TAATCAAATTCGTGAAAATT+GGG | + | chr8_1:77005678-77005697 | None:intergenic | 20.0% |
| !! | ATAATCAAATTCGTGAAAAT+TGG | + | chr8_1:77005679-77005698 | None:intergenic | 20.0% |
| !!! | AACTTTGAAGTACATTTTTA+AGG | + | chr8_1:77005798-77005817 | None:intergenic | 20.0% |
| !!! | TTTTAGTACCTATAATAATC+TGG | + | chr8_1:77006113-77006132 | None:intergenic | 20.0% |
| !! | TTTATGAATTTACTTCAAAC+GGG | + | chr8_1:77006270-77006289 | None:intergenic | 20.0% |
| !! | TTTGAAGAATCAACATATAT+AGG | + | chr8_1:77006776-77006795 | None:intergenic | 20.0% |
| ! | ATGACAAAAACTTTGTAACA+AGG | + | chr8_1:77003936-77003955 | None:intergenic | 25.0% |
| ! | AACTATAAAAAAAACAGTCG+AGG | + | chr8_1:77004000-77004019 | None:intergenic | 25.0% |
| !!! | CGACTGTTTTTTTTATAGTT+TGG | - | chr8_1:77004000-77004019 | Msa1215680:three_prime_UTR | 25.0% |
| !!! | CTTTGATTGATTTTAGGAAA+TGG | - | chr8_1:77004062-77004081 | Msa1215680:three_prime_UTR | 25.0% |
| !!! | TATGTTTTTTTGGATGTACT+TGG | - | chr8_1:77004107-77004126 | Msa1215680:three_prime_UTR | 25.0% |
| ! | TGTAAATTATCTCTTTCACT+AGG | + | chr8_1:77004448-77004467 | None:intergenic | 25.0% |
| !!! | TTATGATTTTAATCTCATGC+AGG | - | chr8_1:77004470-77004489 | Msa1215680:intron | 25.0% |
| !! | CCGATTCAACTTTTATAATT+TGG | - | chr8_1:77004902-77004921 | Msa1215680:CDS | 25.0% |
| ! | TGAAGTTTACCATTAATCAA+TGG | - | chr8_1:77004936-77004955 | Msa1215680:CDS | 25.0% |
| !! | ATATACCTACCATTGATTAA+TGG | + | chr8_1:77004948-77004967 | None:intergenic | 25.0% |
| ! | TTCAGGGTTAATGTTATATT+TGG | - | chr8_1:77004968-77004987 | Msa1215680:CDS | 25.0% |
| ! | AGTATAACGTATAAAAGACT+CGG | + | chr8_1:77005065-77005084 | None:intergenic | 25.0% |
| !! | TTGAAATTGATAATAGCCAT+TGG | - | chr8_1:77005249-77005268 | Msa1215680:CDS | 25.0% |
| !!! | TGCAGTTATTTTTGGTTAAA+AGG | - | chr8_1:77005343-77005362 | Msa1215680:intron | 25.0% |
| ! | AAAGGAAAATAGGAATTACA+AGG | - | chr8_1:77005361-77005380 | Msa1215680:intron | 25.0% |
| !!! | TTACAAGGAGCTTTTTTTAT+TGG | - | chr8_1:77005376-77005395 | Msa1215680:CDS | 25.0% |
| !!! | TGTTTTAAGAAAGATAGTTC+AGG | - | chr8_1:77005470-77005489 | Msa1215680:CDS | 25.0% |
| !!! | AAATTCTTATGCTGTTTTGT+TGG | + | chr8_1:77005644-77005663 | None:intergenic | 25.0% |
| ! | TACCTATAATAATCTGGATT+TGG | + | chr8_1:77006107-77006126 | None:intergenic | 25.0% |
| !!! | AAAGGTCCTATTTTGAATTT+AGG | - | chr8_1:77006242-77006261 | Msa1215680:CDS | 25.0% |
| !!! | AAGGTCCTATTTTGAATTTA+GGG | - | chr8_1:77006243-77006262 | Msa1215680:CDS | 25.0% |
| !!! | TGCTATTTTGTGACATTAAT+AGG | - | chr8_1:77006296-77006315 | Msa1215680:CDS | 25.0% |
| !!! | GCTATTTTGTGACATTAATA+GGG | - | chr8_1:77006297-77006316 | Msa1215680:CDS | 25.0% |
| ! | AAATTTACATAGCCAAACTA+TGG | - | chr8_1:77006694-77006713 | Msa1215680:CDS | 25.0% |
| !! | ATTTTCTTATCAATCACCAA+GGG | + | chr8_1:77006911-77006930 | None:intergenic | 25.0% |
| !! | AATTTTCTTATCAATCACCA+AGG | + | chr8_1:77006912-77006931 | None:intergenic | 25.0% |
| GGTTATCAAAAAAAGCTTCT+GGG | - | chr8_1:77004084-77004103 | Msa1215680:three_prime_UTR | 30.0% | |
| ! | ATTCATGGCAAAGCTTTTAT+TGG | - | chr8_1:77004207-77004226 | Msa1215680:CDS | 30.0% |
| TTGTTTGTGCAACTATTGAT+TGG | - | chr8_1:77004247-77004266 | Msa1215680:CDS | 30.0% | |
| !! | TCTAATTTTCAAGGGTGAAA+AGG | + | chr8_1:77004641-77004660 | None:intergenic | 30.0% |
| TTCACCCTTGAAAATTAGAT+TGG | - | chr8_1:77004642-77004661 | Msa1215680:CDS | 30.0% | |
| TCACCCTTGAAAATTAGATT+GGG | - | chr8_1:77004643-77004662 | Msa1215680:CDS | 30.0% | |
| ATATGTGACTTTATCTTGCA+AGG | + | chr8_1:77004674-77004693 | None:intergenic | 30.0% | |
| TTGCAAGATAAAGTCACATA+TGG | - | chr8_1:77004673-77004692 | Msa1215680:intron | 30.0% | |
| TGCAAGATAAAGTCACATAT+GGG | - | chr8_1:77004674-77004693 | Msa1215680:intron | 30.0% | |
| TTCAAAACAAATGGAGTACA+AGG | + | chr8_1:77004718-77004737 | None:intergenic | 30.0% | |
| ! | TTAAGTTTGGTTTCACTCAA+GGG | - | chr8_1:77004746-77004765 | Msa1215680:intron | 30.0% |
| GTTTACCATTAATCAATGGT+AGG | - | chr8_1:77004940-77004959 | Msa1215680:CDS | 30.0% | |
| ATCAATGGTAGGTATATTTC+AGG | - | chr8_1:77004951-77004970 | Msa1215680:CDS | 30.0% | |
| TCAATGGTAGGTATATTTCA+GGG | - | chr8_1:77004952-77004971 | Msa1215680:CDS | 30.0% | |
| GCAAAGAAATACACTATTCA+TGG | - | chr8_1:77005088-77005107 | Msa1215680:intron | 30.0% | |
| AGAAATACACTATTCATGGT+TGG | - | chr8_1:77005092-77005111 | Msa1215680:intron | 30.0% | |
| GAAATACACTATTCATGGTT+GGG | - | chr8_1:77005093-77005112 | Msa1215680:CDS | 30.0% | |
| ! | ATCAATTTCAAGTGAACTCA+TGG | + | chr8_1:77005240-77005259 | None:intergenic | 30.0% |
| ACTGATATTCCGAAAAATCA+CGG | + | chr8_1:77005929-77005948 | None:intergenic | 30.0% | |
| ! | TGATTATCAGATAAAGCGTT+AGG | + | chr8_1:77005966-77005985 | None:intergenic | 30.0% |
| CTGATAATCACATCAAATAC+AGG | - | chr8_1:77005976-77005995 | Msa1215680:CDS | 30.0% | |
| TCACATCAAATACAGGTATT+TGG | - | chr8_1:77005983-77006002 | Msa1215680:CDS | 30.0% | |
| TGCCAAATCCAGATTATTAT+AGG | - | chr8_1:77006102-77006121 | Msa1215680:intron | 30.0% | |
| ! | CACAATACTGTTTCTCAATT+TGG | - | chr8_1:77006559-77006578 | Msa1215680:intron | 30.0% |
| TGGTTTCTTGGCAAAATTTA+AGG | + | chr8_1:77006615-77006634 | None:intergenic | 30.0% | |
| TTCCATTTAGTACCATAGTT+TGG | + | chr8_1:77006709-77006728 | None:intergenic | 30.0% | |
| ACATATATAGGATTCAGTGA+AGG | + | chr8_1:77006764-77006783 | None:intergenic | 30.0% | |
| TGAGCAAATACAATAGAAAG+AGG | + | chr8_1:77006815-77006834 | None:intergenic | 30.0% | |
| AGTACTGTTGTTAGATTGTT+TGG | - | chr8_1:77006954-77006973 | Msa1215680:five_prime_UTR | 30.0% | |
| CAAAACCAATCAAAATCCTA+GGG | + | chr8_1:77006989-77007008 | None:intergenic | 30.0% | |
| AATGAACTGAATAGTGCATT+GGG | + | chr8_1:77007018-77007037 | None:intergenic | 30.0% | |
| TAATGAACTGAATAGTGCAT+TGG | + | chr8_1:77007019-77007038 | None:intergenic | 30.0% | |
| GGAAGTTGTTACAAGTACAA+TGG | + | chr8_1:77003915-77003934 | None:intergenic | 35.0% | |
| GGGTTATCAAAAAAAGCTTC+TGG | - | chr8_1:77004083-77004102 | Msa1215680:three_prime_UTR | 35.0% | |
| !!! | AGCTTCTGGGTATGTTTTTT+TGG | - | chr8_1:77004097-77004116 | Msa1215680:three_prime_UTR | 35.0% |
| TTCATTGGAGTGAATTGCAT+AGG | - | chr8_1:77004147-77004166 | Msa1215680:CDS | 35.0% | |
| GAAATGATTCAGCTGTGAAA+GGG | - | chr8_1:77004175-77004194 | Msa1215680:CDS | 35.0% | |
| AAATGATTCAGCTGTGAAAG+GGG | - | chr8_1:77004176-77004195 | Msa1215680:CDS | 35.0% | |
| ! | ATGGCAAAGCTTTTATTGGA+AGG | - | chr8_1:77004211-77004230 | Msa1215680:CDS | 35.0% |
| ! | TTTGTGCAACTATTGATTGG+TGG | - | chr8_1:77004250-77004269 | Msa1215680:CDS | 35.0% |
| TCATGCTTCTCTTCTTAATC+TGG | - | chr8_1:77004311-77004330 | Msa1215680:CDS | 35.0% | |
| AAAGGCTGCAAAACATTCAA+AGG | + | chr8_1:77004623-77004642 | None:intergenic | 35.0% | |
| ! | CCACCCAATCTAATTTTCAA+GGG | + | chr8_1:77004649-77004668 | None:intergenic | 35.0% |
| ! | ACCACCCAATCTAATTTTCA+AGG | + | chr8_1:77004650-77004669 | None:intergenic | 35.0% |
| ! | GTTAAGTTTGGTTTCACTCA+AGG | - | chr8_1:77004745-77004764 | Msa1215680:intron | 35.0% |
| !! | AACAGCTTTTTCCAAAAAGC+AGG | - | chr8_1:77004799-77004818 | Msa1215680:intron | 35.0% |
| !! | ACAGCTTTTTCCAAAAAGCA+GGG | - | chr8_1:77004800-77004819 | Msa1215680:intron | 35.0% |
| !! | TGATTCTTTACCCTGCTTTT+TGG | + | chr8_1:77004813-77004832 | None:intergenic | 35.0% |
| ! | TGTGTTTCTATGCGTGAATT+AGG | - | chr8_1:77004873-77004892 | Msa1215680:intron | 35.0% |
| TTTGGATTAAATGCTCTTGC+TGG | - | chr8_1:77004986-77005005 | Msa1215680:CDS | 35.0% | |
| ACTATTCATGGTTGGGAATT+CGG | - | chr8_1:77005100-77005119 | Msa1215680:CDS | 35.0% | |
| !!! | AGGAGCTTTTTTTATTGGAC+AGG | - | chr8_1:77005381-77005400 | Msa1215680:CDS | 35.0% |
| !! | CTTTGAGGCAAATTGGTTTA+AGG | - | chr8_1:77005545-77005564 | Msa1215680:CDS | 35.0% |
| TCCAAGGTTATAAATGTGGT+GGG | + | chr8_1:77005610-77005629 | None:intergenic | 35.0% | |
| ACAGAAAGCTACTTACATAC+AGG | - | chr8_1:77005700-77005719 | Msa1215680:intron | 35.0% | |
| AGAATTCTTTCAACTAAGCC+CGG | + | chr8_1:77005733-77005752 | None:intergenic | 35.0% | |
| ! | ATGCATTTGTCAACAGCTTT+TGG | - | chr8_1:77005890-77005909 | Msa1215680:CDS | 35.0% |
| ! | TGTAACGAACCGTGATTTTT+CGG | - | chr8_1:77005917-77005936 | Msa1215680:CDS | 35.0% |
| TCGGAATATCAGTATTCAGT+AGG | - | chr8_1:77005936-77005955 | Msa1215680:CDS | 35.0% | |
| ACTTTGATAGGAGGAAACTA+TGG | - | chr8_1:77006056-77006075 | Msa1215680:intron | 35.0% | |
| TTTCTTACAGTGCTCTTCTT+TGG | - | chr8_1:77006332-77006351 | Msa1215680:CDS | 35.0% | |
| GATCTTCTTTGTTCCATAGA+AGG | + | chr8_1:77006392-77006411 | None:intergenic | 35.0% | |
| AACTTATGCACATTGTGCAA+AGG | - | chr8_1:77006414-77006433 | Msa1215680:intron | 35.0% | |
| TGATGATACTATCTTGCAGA+AGG | - | chr8_1:77006532-77006551 | Msa1215680:intron | 35.0% | |
| GATGATACTATCTTGCAGAA+GGG | - | chr8_1:77006533-77006552 | Msa1215680:intron | 35.0% | |
| ATTATGAGTGGATGGTTTCT+TGG | + | chr8_1:77006627-77006646 | None:intergenic | 35.0% | |
| AAACCATCCACTCATAATGT+GGG | - | chr8_1:77006629-77006648 | Msa1215680:intron | 35.0% | |
| ! | AGAGTACCATTTAACAGCAA+AGG | - | chr8_1:77006667-77006686 | Msa1215680:intron | 35.0% |
| TACCATTTAACAGCAAAGGA+TGG | - | chr8_1:77006671-77006690 | Msa1215680:intron | 35.0% | |
| !! | TTCCATCCTTTGCTGTTAAA+TGG | + | chr8_1:77006676-77006695 | None:intergenic | 35.0% |
| AGCCAAACTATGGTACTAAA+TGG | - | chr8_1:77006704-77006723 | Msa1215680:CDS | 35.0% | |
| ATTCTAAGTGTAGATTCAGC+TGG | - | chr8_1:77006731-77006750 | Msa1215680:CDS | 35.0% | |
| CTTCAAAGCCAATAACAGTT+AGG | - | chr8_1:77006789-77006808 | Msa1215680:CDS | 35.0% | |
| ACTGTTGTTAGATTGTTTGG+AGG | - | chr8_1:77006957-77006976 | Msa1215680:five_prime_UTR | 35.0% | |
| CTGTTGTTAGATTGTTTGGA+GGG | - | chr8_1:77006958-77006977 | Msa1215680:five_prime_UTR | 35.0% | |
| GCAAAACCAATCAAAATCCT+AGG | + | chr8_1:77006990-77007009 | None:intergenic | 35.0% | |
| CAGTTTCATGTGTATGTTGC+TGG | + | chr8_1:77003873-77003892 | None:intergenic | 40.0% | |
| AGCTTCAGTTTCAGCTTCAT+TGG | - | chr8_1:77004132-77004151 | Msa1215680:exon | 40.0% | |
| GGAGTGAATTGCATAGGATT+AGG | - | chr8_1:77004153-77004172 | Msa1215680:CDS | 40.0% | |
| GGAAATGATTCAGCTGTGAA+AGG | - | chr8_1:77004174-77004193 | Msa1215680:CDS | 40.0% | |
| AAAGGGGTTGTTGTCATTCA+TGG | - | chr8_1:77004192-77004211 | Msa1215680:CDS | 40.0% | |
| CCCTTGAAAATTAGATTGGG+TGG | - | chr8_1:77004646-77004665 | Msa1215680:intron | 40.0% | |
| GTGCTTACCAATGCAAAGAT+GGG | - | chr8_1:77004768-77004787 | Msa1215680:intron | 40.0% | |
| TGGACAGGTAATGAATTGTG+TGG | - | chr8_1:77005396-77005415 | Msa1215680:CDS | 40.0% | |
| TAGTTCAGGCTGTATATCGA+AGG | - | chr8_1:77005484-77005503 | Msa1215680:CDS | 40.0% | |
| AGTTCAGGCTGTATATCGAA+GGG | - | chr8_1:77005485-77005504 | Msa1215680:CDS | 40.0% | |
| ! | GGTGCAATGATTAGTGGTTT+TGG | + | chr8_1:77005516-77005535 | None:intergenic | 40.0% |
| AAACCACTAATCATTGCACC+TGG | - | chr8_1:77005516-77005535 | Msa1215680:CDS | 40.0% | |
| ACCCACCACATTTATAACCT+TGG | - | chr8_1:77005606-77005625 | Msa1215680:intron | 40.0% | |
| GTCCAAGGTTATAAATGTGG+TGG | + | chr8_1:77005611-77005630 | None:intergenic | 40.0% | |
| CTGGTCCAAGGTTATAAATG+TGG | + | chr8_1:77005614-77005633 | None:intergenic | 40.0% | |
| CACATTTATAACCTTGGACC+AGG | - | chr8_1:77005612-77005631 | Msa1215680:intron | 40.0% | |
| !! | CTGTTTTGTTGGAACATACC+TGG | + | chr8_1:77005633-77005652 | None:intergenic | 40.0% |
| GAAAGCTACTTACATACAGG+AGG | - | chr8_1:77005703-77005722 | Msa1215680:intron | 40.0% | |
| CTCAATCCATCCTCTCTTAA+TGG | - | chr8_1:77005751-77005770 | Msa1215680:intron | 40.0% | |
| TACAGGTATTTGGATCAGCT+TGG | - | chr8_1:77005993-77006012 | Msa1215680:CDS | 40.0% | |
| TACTGCAGACAGACTTTGAT+AGG | - | chr8_1:77006044-77006063 | Msa1215680:intron | 40.0% | |
| TGGATTTGGCATGAAAGTAG+TGG | + | chr8_1:77006093-77006112 | None:intergenic | 40.0% | |
| AGCATCACAGACACTAATGA+AGG | + | chr8_1:77006198-77006217 | None:intergenic | 40.0% | |
| ! | ATTGCCTGCAACTTTGAGAA+AGG | - | chr8_1:77006224-77006243 | Msa1215680:CDS | 40.0% |
| CGGGACCCTAAATTCAAAAT+AGG | + | chr8_1:77006251-77006270 | None:intergenic | 40.0% | |
| GAAACCATCCACTCATAATG+TGG | - | chr8_1:77006628-77006647 | Msa1215680:intron | 40.0% | |
| TGATTCTCCCACATTATGAG+TGG | + | chr8_1:77006639-77006658 | None:intergenic | 40.0% | |
| GAAAGAGGCCTAACTGTTAT+TGG | + | chr8_1:77006800-77006819 | None:intergenic | 40.0% | |
| CACTAGGCTAAACCGAAAAT+CGG | - | chr8_1:77006882-77006901 | Msa1215680:CDS | 40.0% | |
| GACATTCAGTTTCTTGCCTT+AGG | - | chr8_1:77007072-77007091 | Msa1215680:five_prime_UTR | 40.0% | |
| AGAAAACGACTCACTACCTA+AGG | + | chr8_1:77007091-77007110 | None:intergenic | 40.0% | |
| ! | ACTGTACTGTCTTTTGCAGC+AGG | - | chr8_1:77003889-77003908 | Msa1215680:three_prime_UTR | 45.0% |
| TTACTCTGCTGTAGTAGCAG+AGG | + | chr8_1:77003972-77003991 | None:intergenic | 45.0% | |
| GGTGCTTACCAATGCAAAGA+TGG | - | chr8_1:77004767-77004786 | Msa1215680:intron | 45.0% | |
| AGCTCATCCCATCTTTGCAT+TGG | + | chr8_1:77004778-77004797 | None:intergenic | 45.0% | |
| TCGGCATTAGTGTAGTTCCA+AGG | + | chr8_1:77005046-77005065 | None:intergenic | 45.0% | |
| ! | AGTGAACTCATGGCTTGTGA+CGG | + | chr8_1:77005230-77005249 | None:intergenic | 45.0% |
| GGTAATGAATTGTGTGGAGC+TGG | - | chr8_1:77005402-77005421 | Msa1215680:CDS | 45.0% | |
| !! | GAGGCTTCTTTGAGGCAAAT+TGG | - | chr8_1:77005538-77005557 | Msa1215680:CDS | 45.0% |
| ATCGGACGAATCCACAAATG+TGG | - | chr8_1:77005581-77005600 | Msa1215680:CDS | 45.0% | |
| CTTACATACAGGAGGTGATC+CGG | - | chr8_1:77005711-77005730 | Msa1215680:intron | 45.0% | |
| TTACATACAGGAGGTGATCC+GGG | - | chr8_1:77005712-77005731 | Msa1215680:intron | 45.0% | |
| TCCATCCTCTCTTAATGGAG+TGG | - | chr8_1:77005756-77005775 | Msa1215680:intron | 45.0% | |
| AAGAACCTCAGCTCAAGCAT+GGG | - | chr8_1:77005819-77005838 | Msa1215680:intron | 45.0% | |
| CTTGGCATGTCAGCTACTTA+TGG | - | chr8_1:77006011-77006030 | Msa1215680:CDS | 45.0% | |
| TGCAGACAGACTTTGATAGG+AGG | - | chr8_1:77006047-77006066 | Msa1215680:intron | 45.0% | |
| AGGACCTTTCTCAAAGTTGC+AGG | + | chr8_1:77006231-77006250 | None:intergenic | 45.0% | |
| TTCCATAGAAGGTAGCTGAC+AGG | + | chr8_1:77006381-77006400 | None:intergenic | 45.0% | |
| ! | GGCAAAATTTAAGGCCACTC+TGG | + | chr8_1:77006606-77006625 | None:intergenic | 45.0% |
| TCTCCCACATTATGAGTGGA+TGG | + | chr8_1:77006635-77006654 | None:intergenic | 45.0% | |
| ! | CAAGCTTTAACAGCAGCATC+TGG | + | chr8_1:77006842-77006861 | None:intergenic | 45.0% |
| ! | TTGCAGCTAGCTTAGCTCAA+TGG | - | chr8_1:77006859-77006878 | Msa1215680:CDS | 45.0% |
| TAGCTTAGCTCAATGGCACT+AGG | - | chr8_1:77006866-77006885 | Msa1215680:CDS | 45.0% | |
| ! | AACCGAAAATCGGTTTCCCT+TGG | - | chr8_1:77006892-77006911 | Msa1215680:CDS | 45.0% |
| !! | CACCAAGGGAAACCGATTTT+CGG | + | chr8_1:77006897-77006916 | None:intergenic | 45.0% |
| !! | CGAAGCCCTAGGATTTTGAT+TGG | - | chr8_1:77006981-77007000 | Msa1215680:five_prime_UTR | 45.0% |
| GCCACCTCAGAAATGTGACT+GGG | - | chr8_1:77004272-77004291 | Msa1215680:CDS | 50.0% | |
| CCACCTCAGAAATGTGACTG+GGG | - | chr8_1:77004273-77004292 | Msa1215680:CDS | 50.0% | |
| CTTCCCCAGTCACATTTCTG+AGG | + | chr8_1:77004279-77004298 | None:intergenic | 50.0% | |
| TGACTGGGGAAGATGCAGTT+GGG | - | chr8_1:77004287-77004306 | Msa1215680:CDS | 50.0% | |
| GAATCCCAGAGTTCTGCTGT+TGG | - | chr8_1:77005019-77005038 | Msa1215680:intron | 50.0% | |
| AGGTCCAACAGCAGAACTCT+GGG | + | chr8_1:77005026-77005045 | None:intergenic | 50.0% | |
| AAGGTCCAACAGCAGAACTC+TGG | + | chr8_1:77005027-77005046 | None:intergenic | 50.0% | |
| AGAGTTCTGCTGTTGGACCT+TGG | - | chr8_1:77005026-77005045 | Msa1215680:intron | 50.0% | |
| GAATTGTGTGGAGCTGGAAC+TGG | - | chr8_1:77005408-77005427 | Msa1215680:CDS | 50.0% | |
| CCTCCAGGTGCAATGATTAG+TGG | + | chr8_1:77005522-77005541 | None:intergenic | 50.0% | |
| CCACTAATCATTGCACCTGG+AGG | - | chr8_1:77005519-77005538 | Msa1215680:CDS | 50.0% | |
| TTTGCCTCAAAGAAGCCTCC+AGG | + | chr8_1:77005537-77005556 | None:intergenic | 50.0% | |
| GTTGGAACATACCTGGTCCA+AGG | + | chr8_1:77005626-77005645 | None:intergenic | 50.0% | |
| GCCACTCCATTAAGAGAGGA+TGG | + | chr8_1:77005760-77005779 | None:intergenic | 50.0% | |
| GTCAGCCACTCCATTAAGAG+AGG | + | chr8_1:77005764-77005783 | None:intergenic | 50.0% | |
| CAAGAACCTCAGCTCAAGCA+TGG | - | chr8_1:77005818-77005837 | Msa1215680:intron | 50.0% | |
| ! | TTGGGGTAGTGGTCATCATC+TGG | - | chr8_1:77005861-77005880 | Msa1215680:intron | 50.0% |
| !! | TCTTCTTTGGCACCGACTCA+TGG | - | chr8_1:77006345-77006364 | Msa1215680:CDS | 50.0% |
| !! | CTTCTTTGGCACCGACTCAT+GGG | - | chr8_1:77006346-77006365 | Msa1215680:CDS | 50.0% |
| GTCCTGTCAGCTACCTTCTA+TGG | - | chr8_1:77006376-77006395 | Msa1215680:intron | 50.0% | |
| GGCCACCTCAGAAATGTGAC+TGG | - | chr8_1:77004271-77004290 | Msa1215680:CDS | 55.0% | |
| ! | CCCCAGTCACATTTCTGAGG+TGG | + | chr8_1:77004276-77004295 | None:intergenic | 55.0% |
| GTGACTGGGGAAGATGCAGT+TGG | - | chr8_1:77004286-77004305 | Msa1215680:CDS | 55.0% | |
| GACTGGGGAAGATGCAGTTG+GGG | - | chr8_1:77004288-77004307 | Msa1215680:CDS | 55.0% | |
| TGCACCTGGAGGCTTCTTTG+AGG | - | chr8_1:77005530-77005549 | Msa1215680:CDS | 55.0% | |
| !! | GTGGTGGGTGACCACATTTG+TGG | + | chr8_1:77005595-77005614 | None:intergenic | 55.0% |
| ACCTCAGCTCAAGCATGGGT+TGG | - | chr8_1:77005823-77005842 | Msa1215680:intron | 55.0% | |
| ACCAACCCATGCTTGAGCTG+AGG | + | chr8_1:77005827-77005846 | None:intergenic | 55.0% | |
| !! | CAAGCATGGGTTGGTGAAGC+AGG | - | chr8_1:77005832-77005851 | Msa1215680:intron | 55.0% |
| !! | CATGGGTTGGTGAAGCAGGA+GGG | - | chr8_1:77005836-77005855 | Msa1215680:intron | 55.0% |
| !! | ATGGGTTGGTGAAGCAGGAG+GGG | - | chr8_1:77005837-77005856 | Msa1215680:intron | 55.0% |
| CACCACTGTTCAAGCCAGAG+TGG | - | chr8_1:77006589-77006608 | Msa1215680:intron | 55.0% | |
| !! | GCATGGGTTGGTGAAGCAGG+AGG | - | chr8_1:77005835-77005854 | Msa1215680:intron | 60.0% |
| TTGGTGAAGCAGGAGGGGCT+TGG | - | chr8_1:77005842-77005861 | Msa1215680:intron | 60.0% | |
| TGGTGAAGCAGGAGGGGCTT+GGG | - | chr8_1:77005843-77005862 | Msa1215680:intron | 60.0% | |
| !! | CTTTGGCACCGACTCATGGG+AGG | - | chr8_1:77006349-77006368 | Msa1215680:intron | 60.0% |
| GGACACGTCCTCCCATGAGT+CGG | + | chr8_1:77006360-77006379 | None:intergenic | 60.0% | |
| ! | GGCCACTCTGGCTTGAACAG+TGG | + | chr8_1:77006594-77006613 | None:intergenic | 60.0% |
| TGTTTGGAGGGCGAAGCCCT+AGG | - | chr8_1:77006970-77006989 | Msa1215680:five_prime_UTR | 60.0% | |
| GGTGAAGCAGGAGGGGCTTG+GGG | - | chr8_1:77005844-77005863 | Msa1215680:intron | 65.0% | |
| GCAGGAGGGGCTTGGGGTAG+TGG | - | chr8_1:77005850-77005869 | Msa1215680:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 77003860 | 77007144 | 77003860 | ID=Msa1215680;Name=Msa1215680 |
| chr8_1 | mRNA | 77003860 | 77007144 | 77003860 | ID=Msa1215680-mRNA-1;Parent=Msa1215680;Name=Msa1215680-mRNA-1;_AED=0.22;_eAED=0.22;_QI=221|1|1|1|1|1|9|276|528 |
| chr8_1 | exon | 77003860 | 77004453 | 77003860 | ID=Msa1215680-mRNA-1:exon:26564;Parent=Msa1215680-mRNA-1 |
| chr8_1 | exon | 77004563 | 77004662 | 77004563 | ID=Msa1215680-mRNA-1:exon:26563;Parent=Msa1215680-mRNA-1 |
| chr8_1 | exon | 77004881 | 77005006 | 77004881 | ID=Msa1215680-mRNA-1:exon:26562;Parent=Msa1215680-mRNA-1 |
| chr8_1 | exon | 77005093 | 77005282 | 77005093 | ID=Msa1215680-mRNA-1:exon:26561;Parent=Msa1215680-mRNA-1 |
| chr8_1 | exon | 77005371 | 77005601 | 77005371 | ID=Msa1215680-mRNA-1:exon:26560;Parent=Msa1215680-mRNA-1 |
| chr8_1 | exon | 77005883 | 77006031 | 77005883 | ID=Msa1215680-mRNA-1:exon:26559;Parent=Msa1215680-mRNA-1 |
| chr8_1 | exon | 77006183 | 77006366 | 77006183 | ID=Msa1215680-mRNA-1:exon:26558;Parent=Msa1215680-mRNA-1 |
| chr8_1 | exon | 77006476 | 77006512 | 77006476 | ID=Msa1215680-mRNA-1:exon:26557;Parent=Msa1215680-mRNA-1 |
| chr8_1 | exon | 77006672 | 77007144 | 77006672 | ID=Msa1215680-mRNA-1:exon:26556;Parent=Msa1215680-mRNA-1 |
| chr8_1 | five_prime_UTR | 77006924 | 77007144 | 77006924 | ID=Msa1215680-mRNA-1:five_prime_utr;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77006672 | 77006923 | 77006672 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77006476 | 77006512 | 77006476 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77006183 | 77006366 | 77006183 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77005883 | 77006031 | 77005883 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77005371 | 77005601 | 77005371 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77005093 | 77005282 | 77005093 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77004881 | 77005006 | 77004881 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77004563 | 77004662 | 77004563 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | CDS | 77004136 | 77004453 | 77004136 | ID=Msa1215680-mRNA-1:cds;Parent=Msa1215680-mRNA-1 |
| chr8_1 | three_prime_UTR | 77003860 | 77004135 | 77003860 | ID=Msa1215680-mRNA-1:three_prime_utr;Parent=Msa1215680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
