Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333820 | XP_003609474.1 | 94.865 | 370 | 18 | 1 | 89 | 458 | 161 | 529 | 0.0 | 691 |
| Msa1333820 | XP_003609474.1 | 98.810 | 84 | 1 | 0 | 1 | 84 | 1 | 84 | 2.92e-49 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333820 | sp|Q9FZP1|HPSE3_ARATH | 59.949 | 392 | 138 | 3 | 86 | 458 | 145 | 536 | 1.87e-168 | 487 |
| Msa1333820 | sp|Q9FZP1|HPSE3_ARATH | 63.462 | 52 | 17 | 1 | 35 | 84 | 25 | 76 | 9.49e-16 | 83.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333820 | G7JGL1 | 94.865 | 370 | 18 | 1 | 89 | 458 | 161 | 529 | 0.0 | 691 |
| Msa1333820 | G7JGL1 | 98.810 | 84 | 1 | 0 | 1 | 84 | 1 | 84 | 1.40e-49 | 187 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1332360 | Msa1333820 | 0.985323 | 3.278554e-163 | -8.615850e-47 |
| Msa1333820 | Msa1448390 | 0.951405 | 2.187588e-109 | -8.615850e-47 |
| Msa1215680 | Msa1333820 | 0.981910 | 9.397134e-154 | -8.615850e-47 |
| Msa0495300 | Msa1333820 | 0.825650 | 4.175179e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333820 | MtrunA17_Chr4g0064851 | 94.865 | 370 | 18 | 1 | 89 | 458 | 161 | 529 | 0.0 | 691 |
| Msa1333820 | MtrunA17_Chr4g0064851 | 98.810 | 84 | 1 | 0 | 1 | 84 | 1 | 84 | 2.69e-53 | 187 |
| Msa1333820 | MtrunA17_Chr2g0304251 | 66.053 | 380 | 114 | 3 | 91 | 457 | 159 | 536 | 1.41e-178 | 510 |
| Msa1333820 | MtrunA17_Chr2g0304251 | 54.118 | 85 | 35 | 2 | 1 | 84 | 1 | 82 | 4.92e-19 | 89.7 |
| Msa1333820 | MtrunA17_Chr3g0086291 | 50.806 | 372 | 176 | 4 | 91 | 458 | 149 | 517 | 1.34e-122 | 367 |
| Msa1333820 | MtrunA17_Chr3g0086241 | 48.608 | 395 | 176 | 6 | 91 | 458 | 149 | 543 | 3.55e-121 | 364 |
| Msa1333820 | MtrunA17_Chr3g0086271 | 50.000 | 372 | 179 | 4 | 91 | 458 | 147 | 515 | 6.05e-120 | 360 |
| Msa1333820 | MtrunA17_Chr3g0086271 | 42.188 | 64 | 36 | 1 | 21 | 84 | 8 | 70 | 7.35e-12 | 67.4 |
| Msa1333820 | MtrunA17_Chr4g0061271 | 47.475 | 396 | 179 | 5 | 91 | 457 | 147 | 542 | 4.02e-115 | 348 |
| Msa1333820 | MtrunA17_Chr3g0086251 | 49.462 | 372 | 181 | 5 | 91 | 458 | 256 | 624 | 2.37e-114 | 349 |
| Msa1333820 | MtrunA17_Chr5g0418671 | 46.505 | 372 | 186 | 4 | 89 | 457 | 142 | 503 | 8.38e-111 | 336 |
| Msa1333820 | MtrunA17_Chr4g0064821 | 67.544 | 228 | 60 | 3 | 98 | 325 | 3 | 216 | 3.23e-104 | 309 |
| Msa1333820 | MtrunA17_Chr4g0064811 | 74.257 | 101 | 25 | 1 | 358 | 458 | 1 | 100 | 1.54e-44 | 151 |
| Msa1333820 | MtrunA17_Chr8g0383141 | 69.697 | 99 | 17 | 2 | 336 | 429 | 10 | 100 | 2.47e-38 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1333820 | AT5G34940.1 | 59.949 | 392 | 138 | 3 | 86 | 458 | 10 | 401 | 5.64e-172 | 489 |
| Msa1333820 | AT5G34940.2 | 59.949 | 392 | 138 | 3 | 86 | 458 | 145 | 536 | 1.90e-169 | 487 |
| Msa1333820 | AT5G34940.2 | 63.462 | 52 | 17 | 1 | 35 | 84 | 25 | 76 | 9.65e-17 | 83.2 |
| Msa1333820 | AT5G34940.4 | 59.732 | 298 | 104 | 2 | 177 | 458 | 2 | 299 | 8.70e-129 | 375 |
| Msa1333820 | AT5G61250.3 | 46.036 | 391 | 188 | 3 | 91 | 458 | 149 | 539 | 7.25e-120 | 361 |
| Msa1333820 | AT5G61250.3 | 40.541 | 74 | 39 | 1 | 38 | 111 | 26 | 94 | 9.93e-12 | 67.4 |
| Msa1333820 | AT5G61250.1 | 46.036 | 391 | 188 | 3 | 91 | 458 | 149 | 539 | 7.25e-120 | 361 |
| Msa1333820 | AT5G61250.1 | 40.541 | 74 | 39 | 1 | 38 | 111 | 26 | 94 | 9.93e-12 | 67.4 |
| Msa1333820 | AT5G61250.2 | 46.036 | 391 | 188 | 3 | 91 | 458 | 149 | 539 | 7.25e-120 | 361 |
| Msa1333820 | AT5G61250.2 | 40.541 | 74 | 39 | 1 | 38 | 111 | 26 | 94 | 9.93e-12 | 67.4 |
| Msa1333820 | AT5G07830.1 | 46.939 | 392 | 184 | 4 | 91 | 458 | 152 | 543 | 1.78e-118 | 357 |
| Msa1333820 | AT5G34940.3 | 64.135 | 237 | 82 | 1 | 86 | 319 | 145 | 381 | 1.39e-106 | 322 |
| Msa1333820 | AT5G34940.3 | 63.462 | 52 | 17 | 1 | 35 | 84 | 25 | 76 | 7.91e-17 | 82.4 |
Find 136 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATACTGTTTCTCAATT+TGG | 0.117308 | 8_4:-54109683 | Msa1333820:CDS |
| TTCAGGGTTAATGTTATATT+TGG | 0.120242 | 8_4:-54111276 | Msa1333820:CDS |
| CTTTGAGGCAAATTGGTTTA+AGG | 0.149506 | 8_4:-54110697 | Msa1333820:CDS |
| AATCAAAGTTAAGATCTTTA+TGG | 0.167612 | 8_4:+54112195 | None:intergenic |
| TGGTTTCTTGGCAAAATTTA+AGG | 0.174708 | 8_4:+54109630 | None:intergenic |
| TTCCATCCTTTGCTGTTAAA+TGG | 0.200876 | 8_4:+54109569 | None:intergenic |
| ATCAATGGTAGGTATATTTC+AGG | 0.201539 | 8_4:-54111293 | Msa1333820:intron |
| TGAAATTGACTTGAGCATTA+TGG | 0.213019 | 8_4:+54109111 | None:intergenic |
| CTCAATCCATCCTCTCTTAA+TGG | 0.220707 | 8_4:-54110491 | Msa1333820:CDS |
| GAAAGAGGCCTAACTGTTAT+TGG | 0.228064 | 8_4:+54109445 | None:intergenic |
| TCACATCAAATACAGGTATT+TGG | 0.232373 | 8_4:-54110259 | Msa1333820:intron |
| TGGTGAAGCAGGAGGGGCTT+GGG | 0.234159 | 8_4:-54110399 | Msa1333820:CDS |
| TTGGTGAAGCAGGAGGGGCT+TGG | 0.270000 | 8_4:-54110400 | Msa1333820:CDS |
| AGTACTGTTGTTAGATTGTT+TGG | 0.273075 | 8_4:-54109288 | Msa1333820:three_prime_UTR |
| TTTCTTACAGTGCTCTTCTT+TGG | 0.278856 | 8_4:-54109910 | Msa1333820:intron |
| AGCCAAACTATGGTACTAAA+TGG | 0.279353 | 8_4:-54109538 | Msa1333820:CDS |
| GGTGCAATGATTAGTGGTTT+TGG | 0.286816 | 8_4:+54110729 | None:intergenic |
| TGCCAAATCCAGATTATTAT+AGG | 0.288593 | 8_4:-54110140 | Msa1333820:intron |
| TCATGCTTCTCTTCTTAATC+TGG | 0.289299 | 8_4:-54111931 | Msa1333820:intron |
| ACTATTCATGGTTGGGAATT+CGG | 0.306619 | 8_4:-54111144 | Msa1333820:intron |
| ATTATGAGTGGATGGTTTCT+TGG | 0.311113 | 8_4:+54109618 | None:intergenic |
| GAGGCTTCTTTGAGGCAAAT+TGG | 0.311182 | 8_4:-54110704 | Msa1333820:CDS |
| ATGCATTTGTCAACAGCTTT+TGG | 0.315595 | 8_4:-54110352 | Msa1333820:intron |
| GATCTTCTTTGTTCCATAGA+AGG | 0.319416 | 8_4:+54109853 | None:intergenic |
| TACCTATAATAATCTGGATT+TGG | 0.319672 | 8_4:+54110138 | None:intergenic |
| TTTGAAGAATCAACATATAT+AGG | 0.336227 | 8_4:+54109469 | None:intergenic |
| GTCCTGTCAGCTACCTTCTA+TGG | 0.336646 | 8_4:-54109866 | Msa1333820:CDS |
| GCAAAGAAATACACTATTCA+TGG | 0.338392 | 8_4:-54111156 | Msa1333820:CDS |
| AGCTTCAGTTTCAGCTTCAT+TGG | 0.343969 | 8_4:-54112110 | Msa1333820:CDS |
| TATGTTGCTGGCAAAGTATT+TGG | 0.347927 | 8_4:+54112384 | None:intergenic |
| TTCCATTTAGTACCATAGTT+TGG | 0.352865 | 8_4:+54109536 | None:intergenic |
| GCAGGAGGGGCTTGGGGTAG+TGG | 0.353714 | 8_4:-54110392 | Msa1333820:CDS |
| GGTGAAGCAGGAGGGGCTTG+GGG | 0.361184 | 8_4:-54110398 | Msa1333820:CDS |
| TTTGGATTAAATGCTCTTGC+TGG | 0.367787 | 8_4:-54111258 | Msa1333820:CDS |
| GGAGTGAATTGCATAGGATT+AGG | 0.368336 | 8_4:-54112089 | Msa1333820:CDS |
| CTTGGCATGTCAGCTACTTA+TGG | 0.369847 | 8_4:-54110231 | Msa1333820:CDS |
| TTGGGGTAGTGGTCATCATC+TGG | 0.378614 | 8_4:-54110381 | Msa1333820:CDS |
| GCAAAACCAATCAAAATCCT+AGG | 0.406941 | 8_4:+54109255 | None:intergenic |
| TCTTCTTTGGCACCGACTCA+TGG | 0.408072 | 8_4:-54109897 | Msa1333820:CDS |
| CTTCAAAGCCAATAACAGTT+AGG | 0.413217 | 8_4:-54109453 | Msa1333820:CDS |
| TAAGGAATTCTTAAACAAAT+CGG | 0.416402 | 8_4:-54110679 | Msa1333820:CDS |
| CCTCCAGGTGCAATGATTAG+TGG | 0.427861 | 8_4:+54110723 | None:intergenic |
| AAAGGGGTTGTTGTCATTCA+TGG | 0.428197 | 8_4:-54112050 | Msa1333820:CDS |
| ACTTTGATAGGAGGAAACTA+TGG | 0.437840 | 8_4:-54110186 | Msa1333820:CDS |
| CAGTTTCATGTGTATGTTGC+TGG | 0.438814 | 8_4:+54112372 | None:intergenic |
| CAAGCATGGGTTGGTGAAGC+AGG | 0.449167 | 8_4:-54110410 | Msa1333820:CDS |
| CAAGCTTTAACAGCAGCATC+TGG | 0.449403 | 8_4:+54109403 | None:intergenic |
| GAATTGTGTGGAGCTGGAAC+TGG | 0.449638 | 8_4:-54110834 | Msa1333820:CDS |
| GAAATACACTATTCATGGTT+GGG | 0.449995 | 8_4:-54111151 | Msa1333820:CDS |
| AGAGTTCTGCTGTTGGACCT+TGG | 0.450053 | 8_4:-54111218 | Msa1333820:CDS |
| AAATTTACATAGCCAAACTA+TGG | 0.453369 | 8_4:-54109548 | Msa1333820:CDS |
| GGCAAAATTTAAGGCCACTC+TGG | 0.454518 | 8_4:+54109639 | None:intergenic |
| TTGCAGCTAGCTTAGCTCAA+TGG | 0.455259 | 8_4:-54109383 | Msa1333820:exon |
| ACCCACCACATTTATAACCT+TGG | 0.456246 | 8_4:-54110636 | Msa1333820:CDS |
| CTTACATACAGGAGGTGATC+CGG | 0.457971 | 8_4:-54110531 | Msa1333820:intron |
| AAGGTCCAACAGCAGAACTC+TGG | 0.458755 | 8_4:+54111220 | None:intergenic |
| TGCACCTGGAGGCTTCTTTG+AGG | 0.459194 | 8_4:-54110712 | Msa1333820:CDS |
| CACTAGGCTAAACCGAAAAT+CGG | 0.461119 | 8_4:-54109360 | Msa1333820:three_prime_UTR |
| AATGAACTGAATAGTGCATT+GGG | 0.465084 | 8_4:+54109227 | None:intergenic |
| TTGTTTGTGCAACTATTGAT+TGG | 0.469018 | 8_4:-54111995 | Msa1333820:CDS |
| GAAATGATTCAGCTGTGAAA+GGG | 0.471866 | 8_4:-54112067 | Msa1333820:CDS |
| GAATCCCAGAGTTCTGCTGT+TGG | 0.478372 | 8_4:-54111225 | Msa1333820:CDS |
| TACTGCAGACAGACTTTGAT+AGG | 0.485428 | 8_4:-54110198 | Msa1333820:CDS |
| TAATGAACTGAATAGTGCAT+TGG | 0.488937 | 8_4:+54109226 | None:intergenic |
| TGACTGGGGAAGATGCAGTT+GGG | 0.489900 | 8_4:-54111955 | Msa1333820:CDS |
| AACCGAAAATCGGTTTCCCT+TGG | 0.491824 | 8_4:-54109350 | Msa1333820:three_prime_UTR |
| AGAAATACACTATTCATGGT+TGG | 0.494288 | 8_4:-54111152 | Msa1333820:CDS |
| CTTCTTTGGCACCGACTCAT+GGG | 0.495122 | 8_4:-54109896 | Msa1333820:CDS |
| GACATTCAGTTTCTTGCCTT+AGG | 0.513469 | 8_4:-54109170 | Msa1333820:three_prime_UTR |
| AGAATTCTTTCAACTAAGCC+CGG | 0.517400 | 8_4:+54110512 | None:intergenic |
| TGAGCAAATACAATAGAAAG+AGG | 0.518407 | 8_4:+54109430 | None:intergenic |
| CCCCAGTCACATTTCTGAGG+TGG | 0.522444 | 8_4:+54111969 | None:intergenic |
| TTACATACAGGAGGTGATCC+GGG | 0.524148 | 8_4:-54110530 | Msa1333820:intron |
| CACATTTATAACCTTGGACC+AGG | 0.527860 | 8_4:-54110630 | Msa1333820:intron |
| TCAATGGTAGGTATATTTCA+GGG | 0.528944 | 8_4:-54111292 | Msa1333820:intron |
| CAAGAACCTCAGCTCAAGCA+TGG | 0.529412 | 8_4:-54110424 | Msa1333820:CDS |
| GGTAATGAATTGTGTGGAGC+TGG | 0.529444 | 8_4:-54110840 | Msa1333820:CDS |
| TCTCCCACATTATGAGTGGA+TGG | 0.529610 | 8_4:+54109610 | None:intergenic |
| TTACTCTGCTGTAGTAGCAG+AGG | 0.530971 | 8_4:+54112273 | None:intergenic |
| TACAGGTATTTGGATCAGCT+TGG | 0.531719 | 8_4:-54110249 | Msa1333820:intron |
| TTTGTGCAACTATTGATTGG+TGG | 0.534149 | 8_4:-54111992 | Msa1333820:CDS |
| GGAAATGATTCAGCTGTGAA+AGG | 0.534369 | 8_4:-54112068 | Msa1333820:CDS |
| CTGTTGTTAGATTGTTTGGA+GGG | 0.536590 | 8_4:-54109284 | Msa1333820:three_prime_UTR |
| GCCACTCCATTAAGAGAGGA+TGG | 0.540608 | 8_4:+54110485 | None:intergenic |
| AGGTCCAACAGCAGAACTCT+GGG | 0.540823 | 8_4:+54111221 | None:intergenic |
| GCATGGGTTGGTGAAGCAGG+AGG | 0.541025 | 8_4:-54110407 | Msa1333820:CDS |
| CATGGGTTGGTGAAGCAGGA+GGG | 0.543776 | 8_4:-54110406 | Msa1333820:CDS |
| TTCCATAGAAGGTAGCTGAC+AGG | 0.546554 | 8_4:+54109864 | None:intergenic |
| CAAAACCAATCAAAATCCTA+GGG | 0.547371 | 8_4:+54109256 | None:intergenic |
| TGTTTGGAGGGCGAAGCCCT+AGG | 0.554563 | 8_4:-54109272 | Msa1333820:three_prime_UTR |
| TTCATTGGAGTGAATTGCAT+AGG | 0.557031 | 8_4:-54112095 | Msa1333820:CDS |
| AGAAAACGACTCACTACCTA+AGG | 0.557890 | 8_4:+54109154 | None:intergenic |
| GTTGGAACATACCTGGTCCA+AGG | 0.558530 | 8_4:+54110619 | None:intergenic |
| ATTCTAAGTGTAGATTCAGC+TGG | 0.564761 | 8_4:-54109511 | Msa1333820:CDS |
| GTGGTGGGTGACCACATTTG+TGG | 0.567042 | 8_4:+54110650 | None:intergenic |
| TACCATTTAACAGCAAAGGA+TGG | 0.568356 | 8_4:-54109571 | Msa1333820:CDS |
| TAGCTTAGCTCAATGGCACT+AGG | 0.569559 | 8_4:-54109376 | Msa1333820:three_prime_UTR |
| GTGACTGGGGAAGATGCAGT+TGG | 0.570547 | 8_4:-54111956 | Msa1333820:CDS |
| ACCTCAGCTCAAGCATGGGT+TGG | 0.570704 | 8_4:-54110419 | Msa1333820:CDS |
| GAAACCATCCACTCATAATG+TGG | 0.570906 | 8_4:-54109614 | Msa1333820:CDS |
| CTTCCCCAGTCACATTTCTG+AGG | 0.574209 | 8_4:+54111966 | None:intergenic |
| TTTGCCTCAAAGAAGCCTCC+AGG | 0.578642 | 8_4:+54110708 | None:intergenic |
| TAGTTCAGGCTGTATATCGA+AGG | 0.579271 | 8_4:-54110758 | Msa1333820:CDS |
| ACCAACCCATGCTTGAGCTG+AGG | 0.583418 | 8_4:+54110418 | None:intergenic |
| ACTGTTGTTAGATTGTTTGG+AGG | 0.583547 | 8_4:-54109285 | Msa1333820:three_prime_UTR |
| AGAGTACCATTTAACAGCAA+AGG | 0.585879 | 8_4:-54109575 | Msa1333820:CDS |
| GCCACCTCAGAAATGTGACT+GGG | 0.585883 | 8_4:-54111970 | Msa1333820:CDS |
| GGCCACTCTGGCTTGAACAG+TGG | 0.589150 | 8_4:+54109651 | None:intergenic |
| ATGGGTTGGTGAAGCAGGAG+GGG | 0.589189 | 8_4:-54110405 | Msa1333820:CDS |
| TGATTCTCCCACATTATGAG+TGG | 0.591100 | 8_4:+54109606 | None:intergenic |
| GGCCACCTCAGAAATGTGAC+TGG | 0.592338 | 8_4:-54111971 | Msa1333820:CDS |
| TCCATCCTCTCTTAATGGAG+TGG | 0.595996 | 8_4:-54110486 | Msa1333820:CDS |
| AAGAACCTCAGCTCAAGCAT+GGG | 0.599111 | 8_4:-54110423 | Msa1333820:CDS |
| GTCCAAGGTTATAAATGTGG+TGG | 0.600899 | 8_4:+54110634 | None:intergenic |
| CTTTGGCACCGACTCATGGG+AGG | 0.606750 | 8_4:-54109893 | Msa1333820:CDS |
| CTGGTCCAAGGTTATAAATG+TGG | 0.608301 | 8_4:+54110631 | None:intergenic |
| AACTTATGCACATTGTGCAA+AGG | 0.615463 | 8_4:-54109828 | Msa1333820:CDS |
| AAACCATCCACTCATAATGT+GGG | 0.621064 | 8_4:-54109613 | Msa1333820:CDS |
| AAACCACTAATCATTGCACC+TGG | 0.631010 | 8_4:-54110726 | Msa1333820:CDS |
| GACTGGGGAAGATGCAGTTG+GGG | 0.631756 | 8_4:-54111954 | Msa1333820:CDS |
| GTCAGCCACTCCATTAAGAG+AGG | 0.631825 | 8_4:+54110481 | None:intergenic |
| AAATGATTCAGCTGTGAAAG+GGG | 0.633658 | 8_4:-54112066 | Msa1333820:CDS |
| TGGATTTGGCATGAAAGTAG+TGG | 0.636768 | 8_4:+54110152 | None:intergenic |
| AGTTCAGGCTGTATATCGAA+GGG | 0.638931 | 8_4:-54110757 | Msa1333820:CDS |
| TCGGCATTAGTGTAGTTCCA+AGG | 0.645458 | 8_4:+54111201 | None:intergenic |
| ATCGGACGAATCCACAAATG+TGG | 0.653324 | 8_4:-54110661 | Msa1333820:CDS |
| TGCAGACAGACTTTGATAGG+AGG | 0.655417 | 8_4:-54110195 | Msa1333820:CDS |
| CACCACTGTTCAAGCCAGAG+TGG | 0.656315 | 8_4:-54109653 | Msa1333820:CDS |
| AGTATAACGTATAAAAGACT+CGG | 0.661223 | 8_4:+54111182 | None:intergenic |
| GGAAGTTGTTACAAGTACAA+TGG | 0.661737 | 8_4:+54112330 | None:intergenic |
| TGGACAGGTAATGAATTGTG+TGG | 0.666362 | 8_4:-54110846 | Msa1333820:intron |
| GGACACGTCCTCCCATGAGT+CGG | 0.680945 | 8_4:+54109885 | None:intergenic |
| CCACTAATCATTGCACCTGG+AGG | 0.683993 | 8_4:-54110723 | Msa1333820:CDS |
| TCCAAGGTTATAAATGTGGT+GGG | 0.685319 | 8_4:+54110635 | None:intergenic |
| ACATATATAGGATTCAGTGA+AGG | 0.688369 | 8_4:+54109481 | None:intergenic |
| CCACCTCAGAAATGTGACTG+GGG | 0.716848 | 8_4:-54111969 | Msa1333820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATGTTTCATTTA+TGG | - | chr8_4:54109632-54109651 | Msa1333820:CDS | 10.0% |
| !! | TTATTATGAAAATAAATAAC+AGG | + | chr8_4:54109809-54109828 | None:intergenic | 10.0% |
| !!! | AATTTGTTAAATGCAATAAA+AGG | - | chr8_4:54109765-54109784 | Msa1333820:intron | 15.0% |
| !!! | TATATATTTGCAGTTATTTT+TGG | - | chr8_4:54110595-54110614 | Msa1333820:intron | 15.0% |
| !! | CAATTAATATTCAACTAATT+CGG | - | chr8_4:54111431-54111450 | Msa1333820:intron | 15.0% |
| !! | ATTTATGAATTTACTTCAAA+CGG | + | chr8_4:54111531-54111550 | None:intergenic | 15.0% |
| !!! | CTTTATGGTTTTTCATAAAT+GGG | + | chr8_4:54109295-54109314 | None:intergenic | 20.0% |
| !!! | TCTTTATGGTTTTTCATAAA+TGG | + | chr8_4:54109296-54109315 | None:intergenic | 20.0% |
| !! | AATCAAAGTTAAGATCTTTA+TGG | + | chr8_4:54109310-54109329 | None:intergenic | 20.0% |
| !!! | TCTTAACTTTGATTGATTTT+AGG | - | chr8_4:54109316-54109335 | Msa1333820:three_prime_UTR | 20.0% |
| !!! | TTTGATTGATTTTAGGAAAT+GGG | - | chr8_4:54109323-54109342 | Msa1333820:three_prime_UTR | 20.0% |
| !!! | TTTAACAAATTTTGTTGTTG+AGG | + | chr8_4:54109756-54109775 | None:intergenic | 20.0% |
| !!! | ACATTTTCTTTCAAAACAAA+TGG | + | chr8_4:54109985-54110004 | None:intergenic | 20.0% |
| !! | TTGAAAGAAAATGTTAAGTT+TGG | - | chr8_4:54109991-54110010 | Msa1333820:intron | 20.0% |
| !!! | TGTTTTTTGATAACTCTAAA+GGG | + | chr8_4:54110101-54110120 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTGATAACTCTAA+AGG | + | chr8_4:54110102-54110121 | None:intergenic | 20.0% |
| !! | CCAAATTATAAAAGTTGAAT+CGG | + | chr8_4:54110163-54110182 | None:intergenic | 20.0% |
| !!! | TATATTGACATTTTTAACGA+AGG | + | chr8_4:54110397-54110416 | None:intergenic | 20.0% |
| !! | CGTTAAAAATGTCAATATAT+TGG | - | chr8_4:54110398-54110417 | Msa1333820:CDS | 20.0% |
| !! | TTAGACTGAAAATCAAAAAA+TGG | - | chr8_4:54110426-54110445 | Msa1333820:CDS | 20.0% |
| !!! | AAATTTAATTTGTTGACCAA+TGG | + | chr8_4:54110526-54110545 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTAAAAGGAAAAT+AGG | - | chr8_4:54110611-54110630 | Msa1333820:intron | 20.0% |
| !! | TAAGGAATTCTTAAACAAAT+CGG | - | chr8_4:54110823-54110842 | Msa1333820:CDS | 20.0% |
| !! | TAATCAAATTCGTGAAAATT+GGG | + | chr8_4:54110938-54110957 | None:intergenic | 20.0% |
| !! | ATAATCAAATTCGTGAAAAT+TGG | + | chr8_4:54110939-54110958 | None:intergenic | 20.0% |
| !!! | AACTTTGAAGTACATTTTTA+AGG | + | chr8_4:54111058-54111077 | None:intergenic | 20.0% |
| !!! | TTTTAGTACCTATAATAATC+TGG | + | chr8_4:54111373-54111392 | None:intergenic | 20.0% |
| !! | TTTATGAATTTACTTCAAAC+GGG | + | chr8_4:54111530-54111549 | None:intergenic | 20.0% |
| !! | TTTGAAGAATCAACATATAT+AGG | + | chr8_4:54112036-54112055 | None:intergenic | 20.0% |
| ! | ATGACAAAAACTTTGTAACA+AGG | + | chr8_4:54109196-54109215 | None:intergenic | 25.0% |
| ! | AACTATAAAAAAAACAGTCG+AGG | + | chr8_4:54109260-54109279 | None:intergenic | 25.0% |
| !!! | CGACTGTTTTTTTTATAGTT+TGG | - | chr8_4:54109260-54109279 | Msa1333820:three_prime_UTR | 25.0% |
| !!! | CTTTGATTGATTTTAGGAAA+TGG | - | chr8_4:54109322-54109341 | Msa1333820:three_prime_UTR | 25.0% |
| !!! | TATGTTTTTTTGGATGTACT+TGG | - | chr8_4:54109367-54109386 | Msa1333820:three_prime_UTR | 25.0% |
| ! | TGTAAATTATCTCTTTCACT+AGG | + | chr8_4:54109707-54109726 | None:intergenic | 25.0% |
| !!! | TTATGATTTTAATCTCATGC+AGG | - | chr8_4:54109729-54109748 | Msa1333820:intron | 25.0% |
| !! | CCGATTCAACTTTTATAATT+TGG | - | chr8_4:54110160-54110179 | Msa1333820:CDS | 25.0% |
| ! | TGAAGTTTACCATTAATCAA+TGG | - | chr8_4:54110194-54110213 | Msa1333820:CDS | 25.0% |
| !! | ATATACCTACCATTGATTAA+TGG | + | chr8_4:54110206-54110225 | None:intergenic | 25.0% |
| ! | TTCAGGGTTAATGTTATATT+TGG | - | chr8_4:54110226-54110245 | Msa1333820:CDS | 25.0% |
| ! | AGTATAACGTATAAAAGACT+CGG | + | chr8_4:54110323-54110342 | None:intergenic | 25.0% |
| !! | TTGAAATTGATAATAGCCAT+TGG | - | chr8_4:54110507-54110526 | Msa1333820:CDS | 25.0% |
| !!! | TGCAGTTATTTTTGGTTAAA+AGG | - | chr8_4:54110603-54110622 | Msa1333820:intron | 25.0% |
| ! | AAAGGAAAATAGGAATTACA+AGG | - | chr8_4:54110621-54110640 | Msa1333820:intron | 25.0% |
| !!! | TTACAAGGAGCTTTTTTTAT+TGG | - | chr8_4:54110636-54110655 | Msa1333820:CDS | 25.0% |
| !!! | TGTTTTAAGAAAGATAGTTC+AGG | - | chr8_4:54110730-54110749 | Msa1333820:CDS | 25.0% |
| !!! | AAATTCTTATGCTGTTTTGT+TGG | + | chr8_4:54110904-54110923 | None:intergenic | 25.0% |
| ! | TACCTATAATAATCTGGATT+TGG | + | chr8_4:54111367-54111386 | None:intergenic | 25.0% |
| !!! | AAAGGTCCTATTTTGAATTT+AGG | - | chr8_4:54111502-54111521 | Msa1333820:intron | 25.0% |
| !!! | AAGGTCCTATTTTGAATTTA+GGG | - | chr8_4:54111503-54111522 | Msa1333820:intron | 25.0% |
| !!! | TGCTATTTTGTGACATTAAT+AGG | - | chr8_4:54111556-54111575 | Msa1333820:intron | 25.0% |
| !!! | GCTATTTTGTGACATTAATA+GGG | - | chr8_4:54111557-54111576 | Msa1333820:intron | 25.0% |
| ! | AAATTTACATAGCCAAACTA+TGG | - | chr8_4:54111954-54111973 | Msa1333820:CDS | 25.0% |
| !! | ATTTTCTTATCAATCACCAA+GGG | + | chr8_4:54112171-54112190 | None:intergenic | 25.0% |
| !! | AATTTTCTTATCAATCACCA+AGG | + | chr8_4:54112172-54112191 | None:intergenic | 25.0% |
| GGTTATCAAAAAAAGCTTCT+GGG | - | chr8_4:54109344-54109363 | Msa1333820:three_prime_UTR | 30.0% | |
| ! | ATTCATGGCAAAGCTTTTAT+TGG | - | chr8_4:54109467-54109486 | Msa1333820:CDS | 30.0% |
| TTGTTTGTGCAACTATTGAT+TGG | - | chr8_4:54109507-54109526 | Msa1333820:CDS | 30.0% | |
| !! | TCTAATTTTCAAGGGTGAAA+AGG | + | chr8_4:54109899-54109918 | None:intergenic | 30.0% |
| TTCACCCTTGAAAATTAGAT+TGG | - | chr8_4:54109900-54109919 | Msa1333820:CDS | 30.0% | |
| TCACCCTTGAAAATTAGATT+GGG | - | chr8_4:54109901-54109920 | Msa1333820:CDS | 30.0% | |
| ATATGTGACTTTATCTTGCA+AGG | + | chr8_4:54109932-54109951 | None:intergenic | 30.0% | |
| TTGCAAGATAAAGTCACATA+TGG | - | chr8_4:54109931-54109950 | Msa1333820:intron | 30.0% | |
| TGCAAGATAAAGTCACATAT+GGG | - | chr8_4:54109932-54109951 | Msa1333820:intron | 30.0% | |
| TTCAAAACAAATGGAGTACA+AGG | + | chr8_4:54109976-54109995 | None:intergenic | 30.0% | |
| ! | TTAAGTTTGGTTTCACTCAA+GGG | - | chr8_4:54110004-54110023 | Msa1333820:intron | 30.0% |
| GTTTACCATTAATCAATGGT+AGG | - | chr8_4:54110198-54110217 | Msa1333820:CDS | 30.0% | |
| ATCAATGGTAGGTATATTTC+AGG | - | chr8_4:54110209-54110228 | Msa1333820:CDS | 30.0% | |
| TCAATGGTAGGTATATTTCA+GGG | - | chr8_4:54110210-54110229 | Msa1333820:CDS | 30.0% | |
| GCAAAGAAATACACTATTCA+TGG | - | chr8_4:54110346-54110365 | Msa1333820:intron | 30.0% | |
| AGAAATACACTATTCATGGT+TGG | - | chr8_4:54110350-54110369 | Msa1333820:intron | 30.0% | |
| GAAATACACTATTCATGGTT+GGG | - | chr8_4:54110351-54110370 | Msa1333820:intron | 30.0% | |
| ! | ATCAATTTCAAGTGAACTCA+TGG | + | chr8_4:54110498-54110517 | None:intergenic | 30.0% |
| ACTGATATTCCGAAAAATCA+CGG | + | chr8_4:54111189-54111208 | None:intergenic | 30.0% | |
| ! | TGATTATCAGATAAAGCGTT+AGG | + | chr8_4:54111226-54111245 | None:intergenic | 30.0% |
| CTGATAATCACATCAAATAC+AGG | - | chr8_4:54111236-54111255 | Msa1333820:CDS | 30.0% | |
| TCACATCAAATACAGGTATT+TGG | - | chr8_4:54111243-54111262 | Msa1333820:CDS | 30.0% | |
| TGCCAAATCCAGATTATTAT+AGG | - | chr8_4:54111362-54111381 | Msa1333820:intron | 30.0% | |
| ! | CACAATACTGTTTCTCAATT+TGG | - | chr8_4:54111819-54111838 | Msa1333820:intron | 30.0% |
| TGGTTTCTTGGCAAAATTTA+AGG | + | chr8_4:54111875-54111894 | None:intergenic | 30.0% | |
| TTCCATTTAGTACCATAGTT+TGG | + | chr8_4:54111969-54111988 | None:intergenic | 30.0% | |
| ACATATATAGGATTCAGTGA+AGG | + | chr8_4:54112024-54112043 | None:intergenic | 30.0% | |
| TGAGCAAATACAATAGAAAG+AGG | + | chr8_4:54112075-54112094 | None:intergenic | 30.0% | |
| AGTACTGTTGTTAGATTGTT+TGG | - | chr8_4:54112214-54112233 | Msa1333820:five_prime_UTR | 30.0% | |
| CAAAACCAATCAAAATCCTA+GGG | + | chr8_4:54112249-54112268 | None:intergenic | 30.0% | |
| AATGAACTGAATAGTGCATT+GGG | + | chr8_4:54112278-54112297 | None:intergenic | 30.0% | |
| TAATGAACTGAATAGTGCAT+TGG | + | chr8_4:54112279-54112298 | None:intergenic | 30.0% | |
| GGAAGTTGTTACAAGTACAA+TGG | + | chr8_4:54109175-54109194 | None:intergenic | 35.0% | |
| GGGTTATCAAAAAAAGCTTC+TGG | - | chr8_4:54109343-54109362 | Msa1333820:three_prime_UTR | 35.0% | |
| !!! | AGCTTCTGGGTATGTTTTTT+TGG | - | chr8_4:54109357-54109376 | Msa1333820:three_prime_UTR | 35.0% |
| TTCATTGGAGTGAATTGCAT+AGG | - | chr8_4:54109407-54109426 | Msa1333820:CDS | 35.0% | |
| GAAATGATTCAGCTGTGAAA+GGG | - | chr8_4:54109435-54109454 | Msa1333820:CDS | 35.0% | |
| AAATGATTCAGCTGTGAAAG+GGG | - | chr8_4:54109436-54109455 | Msa1333820:CDS | 35.0% | |
| ! | ATGGCAAAGCTTTTATTGGA+AGG | - | chr8_4:54109471-54109490 | Msa1333820:CDS | 35.0% |
| ! | TTTGTGCAACTATTGATTGG+TGG | - | chr8_4:54109510-54109529 | Msa1333820:CDS | 35.0% |
| TCATGCTTCTCTTCTTAATC+TGG | - | chr8_4:54109571-54109590 | Msa1333820:CDS | 35.0% | |
| AAAGGCTGCAAAACATTCAA+AGG | + | chr8_4:54109881-54109900 | None:intergenic | 35.0% | |
| ! | CCACCCAATCTAATTTTCAA+GGG | + | chr8_4:54109907-54109926 | None:intergenic | 35.0% |
| ! | ACCACCCAATCTAATTTTCA+AGG | + | chr8_4:54109908-54109927 | None:intergenic | 35.0% |
| ! | GTTAAGTTTGGTTTCACTCA+AGG | - | chr8_4:54110003-54110022 | Msa1333820:intron | 35.0% |
| !! | AACAGCTTTTTCCAAAAAGC+AGG | - | chr8_4:54110057-54110076 | Msa1333820:intron | 35.0% |
| !! | ACAGCTTTTTCCAAAAAGCA+GGG | - | chr8_4:54110058-54110077 | Msa1333820:intron | 35.0% |
| !! | TGATTCTTTACCCTGCTTTT+TGG | + | chr8_4:54110071-54110090 | None:intergenic | 35.0% |
| ! | TGTGTTTCTATGCGTGAATT+AGG | - | chr8_4:54110131-54110150 | Msa1333820:intron | 35.0% |
| TTTGGATTAAATGCTCTTGC+TGG | - | chr8_4:54110244-54110263 | Msa1333820:CDS | 35.0% | |
| ACTATTCATGGTTGGGAATT+CGG | - | chr8_4:54110358-54110377 | Msa1333820:CDS | 35.0% | |
| !!! | AGGAGCTTTTTTTATTGGAC+AGG | - | chr8_4:54110641-54110660 | Msa1333820:CDS | 35.0% |
| !! | CTTTGAGGCAAATTGGTTTA+AGG | - | chr8_4:54110805-54110824 | Msa1333820:CDS | 35.0% |
| TCCAAGGTTATAAATGTGGT+GGG | + | chr8_4:54110870-54110889 | None:intergenic | 35.0% | |
| ACAGAAAGCTACTTACATAC+AGG | - | chr8_4:54110960-54110979 | Msa1333820:intron | 35.0% | |
| AGAATTCTTTCAACTAAGCC+CGG | + | chr8_4:54110993-54111012 | None:intergenic | 35.0% | |
| ! | ATGCATTTGTCAACAGCTTT+TGG | - | chr8_4:54111150-54111169 | Msa1333820:CDS | 35.0% |
| ! | TGTAACGAACCGTGATTTTT+CGG | - | chr8_4:54111177-54111196 | Msa1333820:CDS | 35.0% |
| TCGGAATATCAGTATTCAGT+AGG | - | chr8_4:54111196-54111215 | Msa1333820:CDS | 35.0% | |
| ACTTTGATAGGAGGAAACTA+TGG | - | chr8_4:54111316-54111335 | Msa1333820:intron | 35.0% | |
| TTTCTTACAGTGCTCTTCTT+TGG | - | chr8_4:54111592-54111611 | Msa1333820:intron | 35.0% | |
| GATCTTCTTTGTTCCATAGA+AGG | + | chr8_4:54111652-54111671 | None:intergenic | 35.0% | |
| AACTTATGCACATTGTGCAA+AGG | - | chr8_4:54111674-54111693 | Msa1333820:intron | 35.0% | |
| TGATGATACTATCTTGCAGA+AGG | - | chr8_4:54111792-54111811 | Msa1333820:intron | 35.0% | |
| GATGATACTATCTTGCAGAA+GGG | - | chr8_4:54111793-54111812 | Msa1333820:intron | 35.0% | |
| ATTATGAGTGGATGGTTTCT+TGG | + | chr8_4:54111887-54111906 | None:intergenic | 35.0% | |
| AAACCATCCACTCATAATGT+GGG | - | chr8_4:54111889-54111908 | Msa1333820:intron | 35.0% | |
| ! | AGAGTACCATTTAACAGCAA+AGG | - | chr8_4:54111927-54111946 | Msa1333820:intron | 35.0% |
| TACCATTTAACAGCAAAGGA+TGG | - | chr8_4:54111931-54111950 | Msa1333820:intron | 35.0% | |
| !! | TTCCATCCTTTGCTGTTAAA+TGG | + | chr8_4:54111936-54111955 | None:intergenic | 35.0% |
| AGCCAAACTATGGTACTAAA+TGG | - | chr8_4:54111964-54111983 | Msa1333820:CDS | 35.0% | |
| ATTCTAAGTGTAGATTCAGC+TGG | - | chr8_4:54111991-54112010 | Msa1333820:CDS | 35.0% | |
| CTTCAAAGCCAATAACAGTT+AGG | - | chr8_4:54112049-54112068 | Msa1333820:CDS | 35.0% | |
| ACTGTTGTTAGATTGTTTGG+AGG | - | chr8_4:54112217-54112236 | Msa1333820:five_prime_UTR | 35.0% | |
| CTGTTGTTAGATTGTTTGGA+GGG | - | chr8_4:54112218-54112237 | Msa1333820:five_prime_UTR | 35.0% | |
| GCAAAACCAATCAAAATCCT+AGG | + | chr8_4:54112250-54112269 | None:intergenic | 35.0% | |
| CAGTTTCATGTGTATGTTGC+TGG | + | chr8_4:54109133-54109152 | None:intergenic | 40.0% | |
| AGCTTCAGTTTCAGCTTCAT+TGG | - | chr8_4:54109392-54109411 | Msa1333820:exon | 40.0% | |
| GGAGTGAATTGCATAGGATT+AGG | - | chr8_4:54109413-54109432 | Msa1333820:CDS | 40.0% | |
| GGAAATGATTCAGCTGTGAA+AGG | - | chr8_4:54109434-54109453 | Msa1333820:CDS | 40.0% | |
| AAAGGGGTTGTTGTCATTCA+TGG | - | chr8_4:54109452-54109471 | Msa1333820:CDS | 40.0% | |
| CCCTTGAAAATTAGATTGGG+TGG | - | chr8_4:54109904-54109923 | Msa1333820:intron | 40.0% | |
| GTGCTTACCAATGCAAAGAT+GGG | - | chr8_4:54110026-54110045 | Msa1333820:intron | 40.0% | |
| TGGACAGGTAATGAATTGTG+TGG | - | chr8_4:54110656-54110675 | Msa1333820:CDS | 40.0% | |
| TAGTTCAGGCTGTATATCGA+AGG | - | chr8_4:54110744-54110763 | Msa1333820:CDS | 40.0% | |
| AGTTCAGGCTGTATATCGAA+GGG | - | chr8_4:54110745-54110764 | Msa1333820:CDS | 40.0% | |
| ! | GGTGCAATGATTAGTGGTTT+TGG | + | chr8_4:54110776-54110795 | None:intergenic | 40.0% |
| AAACCACTAATCATTGCACC+TGG | - | chr8_4:54110776-54110795 | Msa1333820:CDS | 40.0% | |
| ACCCACCACATTTATAACCT+TGG | - | chr8_4:54110866-54110885 | Msa1333820:intron | 40.0% | |
| GTCCAAGGTTATAAATGTGG+TGG | + | chr8_4:54110871-54110890 | None:intergenic | 40.0% | |
| CTGGTCCAAGGTTATAAATG+TGG | + | chr8_4:54110874-54110893 | None:intergenic | 40.0% | |
| CACATTTATAACCTTGGACC+AGG | - | chr8_4:54110872-54110891 | Msa1333820:intron | 40.0% | |
| !! | CTGTTTTGTTGGAACATACC+TGG | + | chr8_4:54110893-54110912 | None:intergenic | 40.0% |
| GAAAGCTACTTACATACAGG+AGG | - | chr8_4:54110963-54110982 | Msa1333820:intron | 40.0% | |
| CTCAATCCATCCTCTCTTAA+TGG | - | chr8_4:54111011-54111030 | Msa1333820:intron | 40.0% | |
| TACAGGTATTTGGATCAGCT+TGG | - | chr8_4:54111253-54111272 | Msa1333820:CDS | 40.0% | |
| TACTGCAGACAGACTTTGAT+AGG | - | chr8_4:54111304-54111323 | Msa1333820:intron | 40.0% | |
| TGGATTTGGCATGAAAGTAG+TGG | + | chr8_4:54111353-54111372 | None:intergenic | 40.0% | |
| AGCATCACAGACACTAATGA+AGG | + | chr8_4:54111458-54111477 | None:intergenic | 40.0% | |
| ! | ATTGCCTGCAACTTTGAGAA+AGG | - | chr8_4:54111484-54111503 | Msa1333820:intron | 40.0% |
| CGGGACCCTAAATTCAAAAT+AGG | + | chr8_4:54111511-54111530 | None:intergenic | 40.0% | |
| GAAACCATCCACTCATAATG+TGG | - | chr8_4:54111888-54111907 | Msa1333820:intron | 40.0% | |
| TGATTCTCCCACATTATGAG+TGG | + | chr8_4:54111899-54111918 | None:intergenic | 40.0% | |
| GAAAGAGGCCTAACTGTTAT+TGG | + | chr8_4:54112060-54112079 | None:intergenic | 40.0% | |
| CACTAGGCTAAACCGAAAAT+CGG | - | chr8_4:54112142-54112161 | Msa1333820:CDS | 40.0% | |
| GACATTCAGTTTCTTGCCTT+AGG | - | chr8_4:54112332-54112351 | Msa1333820:five_prime_UTR | 40.0% | |
| AGAAAACGACTCACTACCTA+AGG | + | chr8_4:54112351-54112370 | None:intergenic | 40.0% | |
| ! | ACTGTACTGTCTTTTGCAGC+AGG | - | chr8_4:54109149-54109168 | Msa1333820:three_prime_UTR | 45.0% |
| TTACTCTGCTGTAGTAGCAG+AGG | + | chr8_4:54109232-54109251 | None:intergenic | 45.0% | |
| GGTGCTTACCAATGCAAAGA+TGG | - | chr8_4:54110025-54110044 | Msa1333820:intron | 45.0% | |
| AGCTCATCCCATCTTTGCAT+TGG | + | chr8_4:54110036-54110055 | None:intergenic | 45.0% | |
| TCGGCATTAGTGTAGTTCCA+AGG | + | chr8_4:54110304-54110323 | None:intergenic | 45.0% | |
| ! | AGTGAACTCATGGCTTGTGA+CGG | + | chr8_4:54110488-54110507 | None:intergenic | 45.0% |
| GGTAATGAATTGTGTGGAGC+TGG | - | chr8_4:54110662-54110681 | Msa1333820:CDS | 45.0% | |
| !! | GAGGCTTCTTTGAGGCAAAT+TGG | - | chr8_4:54110798-54110817 | Msa1333820:CDS | 45.0% |
| ATCGGACGAATCCACAAATG+TGG | - | chr8_4:54110841-54110860 | Msa1333820:CDS | 45.0% | |
| CTTACATACAGGAGGTGATC+CGG | - | chr8_4:54110971-54110990 | Msa1333820:intron | 45.0% | |
| TTACATACAGGAGGTGATCC+GGG | - | chr8_4:54110972-54110991 | Msa1333820:intron | 45.0% | |
| TCCATCCTCTCTTAATGGAG+TGG | - | chr8_4:54111016-54111035 | Msa1333820:intron | 45.0% | |
| AAGAACCTCAGCTCAAGCAT+GGG | - | chr8_4:54111079-54111098 | Msa1333820:intron | 45.0% | |
| CTTGGCATGTCAGCTACTTA+TGG | - | chr8_4:54111271-54111290 | Msa1333820:CDS | 45.0% | |
| TGCAGACAGACTTTGATAGG+AGG | - | chr8_4:54111307-54111326 | Msa1333820:intron | 45.0% | |
| AGGACCTTTCTCAAAGTTGC+AGG | + | chr8_4:54111491-54111510 | None:intergenic | 45.0% | |
| TTCCATAGAAGGTAGCTGAC+AGG | + | chr8_4:54111641-54111660 | None:intergenic | 45.0% | |
| ! | GGCAAAATTTAAGGCCACTC+TGG | + | chr8_4:54111866-54111885 | None:intergenic | 45.0% |
| TCTCCCACATTATGAGTGGA+TGG | + | chr8_4:54111895-54111914 | None:intergenic | 45.0% | |
| ! | CAAGCTTTAACAGCAGCATC+TGG | + | chr8_4:54112102-54112121 | None:intergenic | 45.0% |
| ! | TTGCAGCTAGCTTAGCTCAA+TGG | - | chr8_4:54112119-54112138 | Msa1333820:CDS | 45.0% |
| TAGCTTAGCTCAATGGCACT+AGG | - | chr8_4:54112126-54112145 | Msa1333820:CDS | 45.0% | |
| ! | AACCGAAAATCGGTTTCCCT+TGG | - | chr8_4:54112152-54112171 | Msa1333820:CDS | 45.0% |
| !! | CACCAAGGGAAACCGATTTT+CGG | + | chr8_4:54112157-54112176 | None:intergenic | 45.0% |
| !! | CGAAGCCCTAGGATTTTGAT+TGG | - | chr8_4:54112241-54112260 | Msa1333820:five_prime_UTR | 45.0% |
| GCCACCTCAGAAATGTGACT+GGG | - | chr8_4:54109532-54109551 | Msa1333820:CDS | 50.0% | |
| CCACCTCAGAAATGTGACTG+GGG | - | chr8_4:54109533-54109552 | Msa1333820:CDS | 50.0% | |
| CTTCCCCAGTCACATTTCTG+AGG | + | chr8_4:54109539-54109558 | None:intergenic | 50.0% | |
| TGACTGGGGAAGATGCAGTT+GGG | - | chr8_4:54109547-54109566 | Msa1333820:CDS | 50.0% | |
| GAATCCCAGAGTTCTGCTGT+TGG | - | chr8_4:54110277-54110296 | Msa1333820:intron | 50.0% | |
| AGGTCCAACAGCAGAACTCT+GGG | + | chr8_4:54110284-54110303 | None:intergenic | 50.0% | |
| AAGGTCCAACAGCAGAACTC+TGG | + | chr8_4:54110285-54110304 | None:intergenic | 50.0% | |
| AGAGTTCTGCTGTTGGACCT+TGG | - | chr8_4:54110284-54110303 | Msa1333820:intron | 50.0% | |
| GAATTGTGTGGAGCTGGAAC+TGG | - | chr8_4:54110668-54110687 | Msa1333820:CDS | 50.0% | |
| CCTCCAGGTGCAATGATTAG+TGG | + | chr8_4:54110782-54110801 | None:intergenic | 50.0% | |
| CCACTAATCATTGCACCTGG+AGG | - | chr8_4:54110779-54110798 | Msa1333820:CDS | 50.0% | |
| TTTGCCTCAAAGAAGCCTCC+AGG | + | chr8_4:54110797-54110816 | None:intergenic | 50.0% | |
| GTTGGAACATACCTGGTCCA+AGG | + | chr8_4:54110886-54110905 | None:intergenic | 50.0% | |
| GCCACTCCATTAAGAGAGGA+TGG | + | chr8_4:54111020-54111039 | None:intergenic | 50.0% | |
| GTCAGCCACTCCATTAAGAG+AGG | + | chr8_4:54111024-54111043 | None:intergenic | 50.0% | |
| CAAGAACCTCAGCTCAAGCA+TGG | - | chr8_4:54111078-54111097 | Msa1333820:intron | 50.0% | |
| ! | TTGGGGTAGTGGTCATCATC+TGG | - | chr8_4:54111121-54111140 | Msa1333820:intron | 50.0% |
| !! | TCTTCTTTGGCACCGACTCA+TGG | - | chr8_4:54111605-54111624 | Msa1333820:intron | 50.0% |
| !! | CTTCTTTGGCACCGACTCAT+GGG | - | chr8_4:54111606-54111625 | Msa1333820:intron | 50.0% |
| GTCCTGTCAGCTACCTTCTA+TGG | - | chr8_4:54111636-54111655 | Msa1333820:intron | 50.0% | |
| GGCCACCTCAGAAATGTGAC+TGG | - | chr8_4:54109531-54109550 | Msa1333820:CDS | 55.0% | |
| ! | CCCCAGTCACATTTCTGAGG+TGG | + | chr8_4:54109536-54109555 | None:intergenic | 55.0% |
| GTGACTGGGGAAGATGCAGT+TGG | - | chr8_4:54109546-54109565 | Msa1333820:CDS | 55.0% | |
| GACTGGGGAAGATGCAGTTG+GGG | - | chr8_4:54109548-54109567 | Msa1333820:CDS | 55.0% | |
| TGCACCTGGAGGCTTCTTTG+AGG | - | chr8_4:54110790-54110809 | Msa1333820:CDS | 55.0% | |
| !! | GTGGTGGGTGACCACATTTG+TGG | + | chr8_4:54110855-54110874 | None:intergenic | 55.0% |
| ACCTCAGCTCAAGCATGGGT+TGG | - | chr8_4:54111083-54111102 | Msa1333820:intron | 55.0% | |
| ACCAACCCATGCTTGAGCTG+AGG | + | chr8_4:54111087-54111106 | None:intergenic | 55.0% | |
| !! | CAAGCATGGGTTGGTGAAGC+AGG | - | chr8_4:54111092-54111111 | Msa1333820:intron | 55.0% |
| !! | CATGGGTTGGTGAAGCAGGA+GGG | - | chr8_4:54111096-54111115 | Msa1333820:intron | 55.0% |
| !! | ATGGGTTGGTGAAGCAGGAG+GGG | - | chr8_4:54111097-54111116 | Msa1333820:intron | 55.0% |
| CACCACTGTTCAAGCCAGAG+TGG | - | chr8_4:54111849-54111868 | Msa1333820:intron | 55.0% | |
| !! | GCATGGGTTGGTGAAGCAGG+AGG | - | chr8_4:54111095-54111114 | Msa1333820:intron | 60.0% |
| TTGGTGAAGCAGGAGGGGCT+TGG | - | chr8_4:54111102-54111121 | Msa1333820:intron | 60.0% | |
| TGGTGAAGCAGGAGGGGCTT+GGG | - | chr8_4:54111103-54111122 | Msa1333820:intron | 60.0% | |
| !! | CTTTGGCACCGACTCATGGG+AGG | - | chr8_4:54111609-54111628 | Msa1333820:intron | 60.0% |
| GGACACGTCCTCCCATGAGT+CGG | + | chr8_4:54111620-54111639 | None:intergenic | 60.0% | |
| ! | GGCCACTCTGGCTTGAACAG+TGG | + | chr8_4:54111854-54111873 | None:intergenic | 60.0% |
| TGTTTGGAGGGCGAAGCCCT+AGG | - | chr8_4:54112230-54112249 | Msa1333820:five_prime_UTR | 60.0% | |
| GGTGAAGCAGGAGGGGCTTG+GGG | - | chr8_4:54111104-54111123 | Msa1333820:intron | 65.0% | |
| GCAGGAGGGGCTTGGGGTAG+TGG | - | chr8_4:54111110-54111129 | Msa1333820:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 54109120 | 54112404 | 54109120 | ID=Msa1333820;Name=Msa1333820 |
| chr8_4 | mRNA | 54109120 | 54112404 | 54109120 | ID=Msa1333820-mRNA-1;Parent=Msa1333820;Name=Msa1333820-mRNA-1;_AED=0.13;_eAED=0.13;_QI=221|0.83|0.85|1|1|1|7|276|458 |
| chr8_4 | exon | 54109120 | 54109713 | 54109120 | ID=Msa1333820-mRNA-1:exon:16812;Parent=Msa1333820-mRNA-1 |
| chr8_4 | exon | 54109823 | 54109922 | 54109823 | ID=Msa1333820-mRNA-1:exon:16811;Parent=Msa1333820-mRNA-1 |
| chr8_4 | exon | 54110141 | 54110266 | 54110141 | ID=Msa1333820-mRNA-1:exon:16810;Parent=Msa1333820-mRNA-1 |
| chr8_4 | exon | 54110353 | 54110542 | 54110353 | ID=Msa1333820-mRNA-1:exon:16809;Parent=Msa1333820-mRNA-1 |
| chr8_4 | exon | 54110631 | 54110861 | 54110631 | ID=Msa1333820-mRNA-1:exon:16808;Parent=Msa1333820-mRNA-1 |
| chr8_4 | exon | 54111145 | 54111304 | 54111145 | ID=Msa1333820-mRNA-1:exon:16807;Parent=Msa1333820-mRNA-1 |
| chr8_4 | exon | 54111932 | 54112404 | 54111932 | ID=Msa1333820-mRNA-1:exon:16806;Parent=Msa1333820-mRNA-1 |
| chr8_4 | five_prime_UTR | 54112184 | 54112404 | 54112184 | ID=Msa1333820-mRNA-1:five_prime_utr;Parent=Msa1333820-mRNA-1 |
| chr8_4 | CDS | 54111932 | 54112183 | 54111932 | ID=Msa1333820-mRNA-1:cds;Parent=Msa1333820-mRNA-1 |
| chr8_4 | CDS | 54111145 | 54111304 | 54111145 | ID=Msa1333820-mRNA-1:cds;Parent=Msa1333820-mRNA-1 |
| chr8_4 | CDS | 54110631 | 54110861 | 54110631 | ID=Msa1333820-mRNA-1:cds;Parent=Msa1333820-mRNA-1 |
| chr8_4 | CDS | 54110353 | 54110542 | 54110353 | ID=Msa1333820-mRNA-1:cds;Parent=Msa1333820-mRNA-1 |
| chr8_4 | CDS | 54110141 | 54110266 | 54110141 | ID=Msa1333820-mRNA-1:cds;Parent=Msa1333820-mRNA-1 |
| chr8_4 | CDS | 54109823 | 54109922 | 54109823 | ID=Msa1333820-mRNA-1:cds;Parent=Msa1333820-mRNA-1 |
| chr8_4 | CDS | 54109396 | 54109713 | 54109396 | ID=Msa1333820-mRNA-1:cds;Parent=Msa1333820-mRNA-1 |
| chr8_4 | three_prime_UTR | 54109120 | 54109395 | 54109120 | ID=Msa1333820-mRNA-1:three_prime_utr;Parent=Msa1333820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
