Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332360 | XP_003609474.1 | 94.340 | 530 | 27 | 2 | 1 | 528 | 1 | 529 | 0.0 | 1008 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332360 | sp|Q9FZP1|HPSE3_ARATH | 62.109 | 512 | 176 | 3 | 35 | 528 | 25 | 536 | 0.0 | 678 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332360 | G7JGL1 | 94.340 | 530 | 27 | 2 | 1 | 528 | 1 | 529 | 0.0 | 1008 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1332360 | Msa1333820 | 0.985323 | 3.278554e-163 | -8.615850e-47 |
| Msa1332360 | Msa1448390 | 0.963697 | 2.104314e-122 | -8.615850e-47 |
| Msa0301820 | Msa1332360 | 0.804242 | 2.373577e-49 | -8.615850e-47 |
| Msa1215680 | Msa1332360 | 0.996098 | 2.217475e-223 | -8.615850e-47 |
| Msa0495300 | Msa1332360 | 0.833685 | 4.627996e-56 | -8.615850e-47 |
| Msa0508180 | Msa1332360 | 0.803375 | 3.592383e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332360 | MtrunA17_Chr4g0064851 | 94.340 | 530 | 27 | 2 | 1 | 528 | 1 | 529 | 0.0 | 1008 |
| Msa1332360 | MtrunA17_Chr2g0304251 | 64.880 | 541 | 171 | 5 | 1 | 527 | 1 | 536 | 0.0 | 714 |
| Msa1332360 | MtrunA17_Chr3g0086241 | 47.706 | 545 | 253 | 9 | 14 | 528 | 1 | 543 | 7.69e-173 | 499 |
| Msa1332360 | MtrunA17_Chr3g0086271 | 49.023 | 512 | 253 | 5 | 21 | 528 | 8 | 515 | 8.02e-173 | 498 |
| Msa1332360 | MtrunA17_Chr3g0086291 | 50.302 | 497 | 236 | 6 | 39 | 528 | 25 | 517 | 8.17e-173 | 498 |
| Msa1332360 | MtrunA17_Chr4g0061271 | 48.069 | 518 | 240 | 5 | 39 | 527 | 25 | 542 | 2.28e-166 | 482 |
| Msa1332360 | MtrunA17_Chr3g0086251 | 48.362 | 519 | 259 | 7 | 14 | 528 | 111 | 624 | 7.33e-165 | 481 |
| Msa1332360 | MtrunA17_Chr5g0418671 | 45.769 | 520 | 257 | 5 | 11 | 527 | 6 | 503 | 4.66e-163 | 472 |
| Msa1332360 | MtrunA17_Chr4g0064821 | 67.544 | 228 | 60 | 3 | 168 | 395 | 3 | 216 | 2.88e-103 | 309 |
| Msa1332360 | MtrunA17_Chr4g0064811 | 74.257 | 101 | 25 | 1 | 428 | 528 | 1 | 100 | 6.95e-44 | 150 |
| Msa1332360 | MtrunA17_Chr8g0383141 | 69.697 | 99 | 17 | 2 | 406 | 499 | 10 | 100 | 6.55e-38 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1332360 | AT5G34940.2 | 62.109 | 512 | 176 | 3 | 35 | 528 | 25 | 536 | 0.0 | 678 |
| Msa1332360 | AT5G34940.1 | 60.848 | 401 | 141 | 2 | 144 | 528 | 1 | 401 | 0.0 | 515 |
| Msa1332360 | AT5G34940.3 | 63.585 | 357 | 128 | 1 | 35 | 389 | 25 | 381 | 8.50e-174 | 495 |
| Msa1332360 | AT5G61250.3 | 46.887 | 514 | 250 | 3 | 38 | 528 | 26 | 539 | 2.60e-173 | 500 |
| Msa1332360 | AT5G61250.1 | 46.887 | 514 | 250 | 3 | 38 | 528 | 26 | 539 | 2.60e-173 | 500 |
| Msa1332360 | AT5G61250.2 | 46.887 | 514 | 250 | 3 | 38 | 528 | 26 | 539 | 2.60e-173 | 500 |
| Msa1332360 | AT5G07830.1 | 47.379 | 515 | 247 | 4 | 38 | 528 | 29 | 543 | 3.84e-171 | 494 |
| Msa1332360 | AT5G34940.4 | 59.732 | 298 | 104 | 2 | 247 | 528 | 2 | 299 | 1.09e-127 | 375 |
Find 147 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATACTGTTTCTCAATT+TGG | 0.117308 | 8_4:-52340564 | Msa1332360:CDS |
| TTCAGGGTTAATGTTATATT+TGG | 0.120242 | 8_4:-52342155 | Msa1332360:intron |
| CTTTGAGGCAAATTGGTTTA+AGG | 0.149506 | 8_4:-52341578 | Msa1332360:CDS |
| AATCAAAGTTAAGATCTTTA+TGG | 0.167612 | 8_4:+52343076 | None:intergenic |
| TGGTTTCTTGGCAAAATTTA+AGG | 0.174708 | 8_4:+52340511 | None:intergenic |
| TTCCATCCTTTGCTGTTAAA+TGG | 0.200876 | 8_4:+52340450 | None:intergenic |
| TGAAATTGACTTGAGCATTA+TGG | 0.213019 | 8_4:+52339992 | None:intergenic |
| CTCAATCCATCCTCTCTTAA+TGG | 0.220707 | 8_4:-52341372 | Msa1332360:CDS |
| GAAAGAGGCCTAACTGTTAT+TGG | 0.228064 | 8_4:+52340326 | None:intergenic |
| TCACATCAAATACAGGTATT+TGG | 0.232373 | 8_4:-52341140 | Msa1332360:intron |
| TGGTGAAGCAGGAGGGGCTT+GGG | 0.234159 | 8_4:-52341280 | Msa1332360:CDS |
| TTGGTGAAGCAGGAGGGGCT+TGG | 0.270000 | 8_4:-52341281 | Msa1332360:CDS |
| AGTACTGTTGTTAGATTGTT+TGG | 0.273075 | 8_4:-52340169 | Msa1332360:three_prime_UTR |
| TTTCTTACAGTGCTCTTCTT+TGG | 0.278856 | 8_4:-52340791 | Msa1332360:intron |
| AGCCAAACTATGGTACTAAA+TGG | 0.279353 | 8_4:-52340419 | Msa1332360:CDS |
| GGTGCAATGATTAGTGGTTT+TGG | 0.286816 | 8_4:+52341610 | None:intergenic |
| TGCCAAATCCAGATTATTAT+AGG | 0.288593 | 8_4:-52341021 | Msa1332360:intron |
| TCATGCTTCTCTTCTTAATC+TGG | 0.289299 | 8_4:-52342812 | Msa1332360:intron |
| TTGAAAGAAAATGTTAAGTT+TGG | 0.289585 | 8_4:-52342390 | Msa1332360:CDS |
| ACTATTCATGGTTGGGAATT+CGG | 0.306619 | 8_4:-52342023 | Msa1332360:intron |
| ATTATGAGTGGATGGTTTCT+TGG | 0.311113 | 8_4:+52340499 | None:intergenic |
| GAGGCTTCTTTGAGGCAAAT+TGG | 0.311182 | 8_4:-52341585 | Msa1332360:CDS |
| ATGCATTTGTCAACAGCTTT+TGG | 0.315595 | 8_4:-52341233 | Msa1332360:intron |
| GATCTTCTTTGTTCCATAGA+AGG | 0.319416 | 8_4:+52340734 | None:intergenic |
| TACCTATAATAATCTGGATT+TGG | 0.319672 | 8_4:+52341019 | None:intergenic |
| TTTGAAGAATCAACATATAT+AGG | 0.336227 | 8_4:+52340350 | None:intergenic |
| GTCCTGTCAGCTACCTTCTA+TGG | 0.336646 | 8_4:-52340747 | Msa1332360:CDS |
| GCAAAGAAATACACTATTCA+TGG | 0.338392 | 8_4:-52342035 | Msa1332360:CDS |
| TTCACCCTTGAAAATTAGAT+TGG | 0.343603 | 8_4:-52342481 | Msa1332360:CDS |
| AGCTTCAGTTTCAGCTTCAT+TGG | 0.343969 | 8_4:-52342991 | Msa1332360:CDS |
| TATGTTGCTGGCAAAGTATT+TGG | 0.347927 | 8_4:+52343265 | None:intergenic |
| TTCCATTTAGTACCATAGTT+TGG | 0.352865 | 8_4:+52340417 | None:intergenic |
| GCAGGAGGGGCTTGGGGTAG+TGG | 0.353714 | 8_4:-52341273 | Msa1332360:CDS |
| GGTGAAGCAGGAGGGGCTTG+GGG | 0.361184 | 8_4:-52341279 | Msa1332360:CDS |
| TTTGGATTAAATGCTCTTGC+TGG | 0.367787 | 8_4:-52342137 | Msa1332360:CDS |
| GGAGTGAATTGCATAGGATT+AGG | 0.368336 | 8_4:-52342970 | Msa1332360:CDS |
| CTTGGCATGTCAGCTACTTA+TGG | 0.369847 | 8_4:-52341112 | Msa1332360:CDS |
| TTGGGGTAGTGGTCATCATC+TGG | 0.378614 | 8_4:-52341262 | Msa1332360:CDS |
| GCAAAACCAATCAAAATCCT+AGG | 0.406941 | 8_4:+52340136 | None:intergenic |
| TCTTCTTTGGCACCGACTCA+TGG | 0.408072 | 8_4:-52340778 | Msa1332360:CDS |
| TTGCAAGATAAAGTCACATA+TGG | 0.412733 | 8_4:-52342450 | Msa1332360:CDS |
| CTTCAAAGCCAATAACAGTT+AGG | 0.413217 | 8_4:-52340334 | Msa1332360:CDS |
| TAAGGAATTCTTAAACAAAT+CGG | 0.416402 | 8_4:-52341560 | Msa1332360:CDS |
| CCTCCAGGTGCAATGATTAG+TGG | 0.427861 | 8_4:+52341604 | None:intergenic |
| AAAGGGGTTGTTGTCATTCA+TGG | 0.428197 | 8_4:-52342931 | Msa1332360:CDS |
| ACTTTGATAGGAGGAAACTA+TGG | 0.437840 | 8_4:-52341067 | Msa1332360:CDS |
| CAGTTTCATGTGTATGTTGC+TGG | 0.438814 | 8_4:+52343253 | None:intergenic |
| CAAGCATGGGTTGGTGAAGC+AGG | 0.449167 | 8_4:-52341291 | Msa1332360:CDS |
| CAAGCTTTAACAGCAGCATC+TGG | 0.449403 | 8_4:+52340284 | None:intergenic |
| GAATTGTGTGGAGCTGGAAC+TGG | 0.449638 | 8_4:-52341715 | Msa1332360:CDS |
| GAAATACACTATTCATGGTT+GGG | 0.449995 | 8_4:-52342030 | Msa1332360:CDS |
| AGAGTTCTGCTGTTGGACCT+TGG | 0.450053 | 8_4:-52342097 | Msa1332360:CDS |
| AAATTTACATAGCCAAACTA+TGG | 0.453369 | 8_4:-52340429 | Msa1332360:CDS |
| GGCAAAATTTAAGGCCACTC+TGG | 0.454518 | 8_4:+52340520 | None:intergenic |
| TTGCAGCTAGCTTAGCTCAA+TGG | 0.455259 | 8_4:-52340264 | Msa1332360:exon |
| ACCCACCACATTTATAACCT+TGG | 0.456246 | 8_4:-52341517 | Msa1332360:CDS |
| CTTACATACAGGAGGTGATC+CGG | 0.457971 | 8_4:-52341412 | Msa1332360:intron |
| AAGGTCCAACAGCAGAACTC+TGG | 0.458755 | 8_4:+52342099 | None:intergenic |
| TGCACCTGGAGGCTTCTTTG+AGG | 0.459194 | 8_4:-52341593 | Msa1332360:CDS |
| CACTAGGCTAAACCGAAAAT+CGG | 0.461119 | 8_4:-52340241 | Msa1332360:three_prime_UTR |
| AGCTCATCCCATCTTTGCAT+TGG | 0.461356 | 8_4:+52342348 | None:intergenic |
| AATGAACTGAATAGTGCATT+GGG | 0.465084 | 8_4:+52340108 | None:intergenic |
| GTTAAGTTTGGTTTCACTCA+AGG | 0.468571 | 8_4:-52342378 | Msa1332360:CDS |
| TTGTTTGTGCAACTATTGAT+TGG | 0.469018 | 8_4:-52342876 | Msa1332360:CDS |
| GAAATGATTCAGCTGTGAAA+GGG | 0.471866 | 8_4:-52342948 | Msa1332360:CDS |
| GGTGCTTACCAATGCAAAGA+TGG | 0.475234 | 8_4:-52342356 | Msa1332360:CDS |
| GAATCCCAGAGTTCTGCTGT+TGG | 0.478372 | 8_4:-52342104 | Msa1332360:CDS |
| TCACCCTTGAAAATTAGATT+GGG | 0.483289 | 8_4:-52342480 | Msa1332360:CDS |
| TACTGCAGACAGACTTTGAT+AGG | 0.485428 | 8_4:-52341079 | Msa1332360:CDS |
| TTCAAAACAAATGGAGTACA+AGG | 0.488925 | 8_4:+52342408 | None:intergenic |
| TAATGAACTGAATAGTGCAT+TGG | 0.488937 | 8_4:+52340107 | None:intergenic |
| TGACTGGGGAAGATGCAGTT+GGG | 0.489900 | 8_4:-52342836 | Msa1332360:CDS |
| AACCGAAAATCGGTTTCCCT+TGG | 0.491824 | 8_4:-52340231 | Msa1332360:three_prime_UTR |
| AGAAATACACTATTCATGGT+TGG | 0.494288 | 8_4:-52342031 | Msa1332360:CDS |
| CTTCTTTGGCACCGACTCAT+GGG | 0.495122 | 8_4:-52340777 | Msa1332360:CDS |
| CCCTTGAAAATTAGATTGGG+TGG | 0.504477 | 8_4:-52342477 | Msa1332360:CDS |
| GACATTCAGTTTCTTGCCTT+AGG | 0.513469 | 8_4:-52340051 | Msa1332360:three_prime_UTR |
| AGAATTCTTTCAACTAAGCC+CGG | 0.517400 | 8_4:+52341393 | None:intergenic |
| TGAGCAAATACAATAGAAAG+AGG | 0.518407 | 8_4:+52340311 | None:intergenic |
| CCCCAGTCACATTTCTGAGG+TGG | 0.522444 | 8_4:+52342850 | None:intergenic |
| TTACATACAGGAGGTGATCC+GGG | 0.524148 | 8_4:-52341411 | Msa1332360:intron |
| CACATTTATAACCTTGGACC+AGG | 0.527860 | 8_4:-52341511 | Msa1332360:intron |
| CAAGAACCTCAGCTCAAGCA+TGG | 0.529412 | 8_4:-52341305 | Msa1332360:CDS |
| GGTAATGAATTGTGTGGAGC+TGG | 0.529444 | 8_4:-52341721 | Msa1332360:CDS |
| TCTCCCACATTATGAGTGGA+TGG | 0.529610 | 8_4:+52340491 | None:intergenic |
| ATATGTGACTTTATCTTGCA+AGG | 0.529864 | 8_4:+52342452 | None:intergenic |
| TTACTCTGCTGTAGTAGCAG+AGG | 0.530971 | 8_4:+52343154 | None:intergenic |
| TACAGGTATTTGGATCAGCT+TGG | 0.531719 | 8_4:-52341130 | Msa1332360:intron |
| TTTGTGCAACTATTGATTGG+TGG | 0.534149 | 8_4:-52342873 | Msa1332360:CDS |
| GGAAATGATTCAGCTGTGAA+AGG | 0.534369 | 8_4:-52342949 | Msa1332360:CDS |
| TTAAGTTTGGTTTCACTCAA+GGG | 0.534562 | 8_4:-52342377 | Msa1332360:CDS |
| CTGTTGTTAGATTGTTTGGA+GGG | 0.536590 | 8_4:-52340165 | Msa1332360:three_prime_UTR |
| GCCACTCCATTAAGAGAGGA+TGG | 0.540608 | 8_4:+52341366 | None:intergenic |
| AGGTCCAACAGCAGAACTCT+GGG | 0.540823 | 8_4:+52342100 | None:intergenic |
| GCATGGGTTGGTGAAGCAGG+AGG | 0.541025 | 8_4:-52341288 | Msa1332360:CDS |
| CATGGGTTGGTGAAGCAGGA+GGG | 0.543776 | 8_4:-52341287 | Msa1332360:CDS |
| TTCCATAGAAGGTAGCTGAC+AGG | 0.546554 | 8_4:+52340745 | None:intergenic |
| CAAAACCAATCAAAATCCTA+GGG | 0.547371 | 8_4:+52340137 | None:intergenic |
| TGTTTGGAGGGCGAAGCCCT+AGG | 0.554563 | 8_4:-52340153 | Msa1332360:three_prime_UTR |
| TTCATTGGAGTGAATTGCAT+AGG | 0.557031 | 8_4:-52342976 | Msa1332360:CDS |
| AGAAAACGACTCACTACCTA+AGG | 0.557890 | 8_4:+52340035 | None:intergenic |
| GTTGGAACATACCTGGTCCA+AGG | 0.558530 | 8_4:+52341500 | None:intergenic |
| ATTCTAAGTGTAGATTCAGC+TGG | 0.564761 | 8_4:-52340392 | Msa1332360:CDS |
| GTGGTGGGTGACCACATTTG+TGG | 0.567042 | 8_4:+52341531 | None:intergenic |
| TGCAAGATAAAGTCACATAT+GGG | 0.568227 | 8_4:-52342449 | Msa1332360:CDS |
| TACCATTTAACAGCAAAGGA+TGG | 0.568356 | 8_4:-52340452 | Msa1332360:CDS |
| TAGCTTAGCTCAATGGCACT+AGG | 0.569559 | 8_4:-52340257 | Msa1332360:three_prime_UTR |
| GTGACTGGGGAAGATGCAGT+TGG | 0.570547 | 8_4:-52342837 | Msa1332360:CDS |
| ACCTCAGCTCAAGCATGGGT+TGG | 0.570704 | 8_4:-52341300 | Msa1332360:CDS |
| GAAACCATCCACTCATAATG+TGG | 0.570906 | 8_4:-52340495 | Msa1332360:CDS |
| CTTCCCCAGTCACATTTCTG+AGG | 0.574209 | 8_4:+52342847 | None:intergenic |
| TTTGCCTCAAAGAAGCCTCC+AGG | 0.578642 | 8_4:+52341589 | None:intergenic |
| GTGCTTACCAATGCAAAGAT+GGG | 0.579091 | 8_4:-52342355 | Msa1332360:CDS |
| TAGTTCAGGCTGTATATCGA+AGG | 0.579271 | 8_4:-52341639 | Msa1332360:CDS |
| ACCAACCCATGCTTGAGCTG+AGG | 0.583418 | 8_4:+52341299 | None:intergenic |
| ACTGTTGTTAGATTGTTTGG+AGG | 0.583547 | 8_4:-52340166 | Msa1332360:three_prime_UTR |
| AGAGTACCATTTAACAGCAA+AGG | 0.585879 | 8_4:-52340456 | Msa1332360:CDS |
| GCCACCTCAGAAATGTGACT+GGG | 0.585883 | 8_4:-52342851 | Msa1332360:CDS |
| GGCCACTCTGGCTTGAACAG+TGG | 0.589150 | 8_4:+52340532 | None:intergenic |
| ATGGGTTGGTGAAGCAGGAG+GGG | 0.589189 | 8_4:-52341286 | Msa1332360:CDS |
| TGATTCTCCCACATTATGAG+TGG | 0.591100 | 8_4:+52340487 | None:intergenic |
| GGCCACCTCAGAAATGTGAC+TGG | 0.592338 | 8_4:-52342852 | Msa1332360:CDS |
| TCCATCCTCTCTTAATGGAG+TGG | 0.595996 | 8_4:-52341367 | Msa1332360:CDS |
| AAGAACCTCAGCTCAAGCAT+GGG | 0.599111 | 8_4:-52341304 | Msa1332360:CDS |
| GTCCAAGGTTATAAATGTGG+TGG | 0.600899 | 8_4:+52341515 | None:intergenic |
| CTTTGGCACCGACTCATGGG+AGG | 0.606750 | 8_4:-52340774 | Msa1332360:CDS |
| CTGGTCCAAGGTTATAAATG+TGG | 0.608301 | 8_4:+52341512 | None:intergenic |
| AACTTATGCACATTGTGCAA+AGG | 0.615463 | 8_4:-52340709 | Msa1332360:CDS |
| AAACCATCCACTCATAATGT+GGG | 0.621064 | 8_4:-52340494 | Msa1332360:CDS |
| AAACCACTAATCATTGCACC+TGG | 0.631010 | 8_4:-52341607 | Msa1332360:CDS |
| GACTGGGGAAGATGCAGTTG+GGG | 0.631756 | 8_4:-52342835 | Msa1332360:CDS |
| GTCAGCCACTCCATTAAGAG+AGG | 0.631825 | 8_4:+52341362 | None:intergenic |
| AAATGATTCAGCTGTGAAAG+GGG | 0.633658 | 8_4:-52342947 | Msa1332360:CDS |
| TGGATTTGGCATGAAAGTAG+TGG | 0.636768 | 8_4:+52341033 | None:intergenic |
| AGTTCAGGCTGTATATCGAA+GGG | 0.638931 | 8_4:-52341638 | Msa1332360:CDS |
| TCGGCATTAGTGTAGTTCCA+AGG | 0.645458 | 8_4:+52342080 | None:intergenic |
| ATCGGACGAATCCACAAATG+TGG | 0.653324 | 8_4:-52341542 | Msa1332360:CDS |
| TGCAGACAGACTTTGATAGG+AGG | 0.655417 | 8_4:-52341076 | Msa1332360:CDS |
| CACCACTGTTCAAGCCAGAG+TGG | 0.656315 | 8_4:-52340534 | Msa1332360:CDS |
| AGTATAACGTATAAAAGACT+CGG | 0.661223 | 8_4:+52342061 | None:intergenic |
| GGAAGTTGTTACAAGTACAA+TGG | 0.661737 | 8_4:+52343211 | None:intergenic |
| TGGACAGGTAATGAATTGTG+TGG | 0.666362 | 8_4:-52341727 | Msa1332360:intron |
| GGACACGTCCTCCCATGAGT+CGG | 0.680945 | 8_4:+52340766 | None:intergenic |
| CCACTAATCATTGCACCTGG+AGG | 0.683993 | 8_4:-52341604 | Msa1332360:CDS |
| TCCAAGGTTATAAATGTGGT+GGG | 0.685319 | 8_4:+52341516 | None:intergenic |
| ACATATATAGGATTCAGTGA+AGG | 0.688369 | 8_4:+52340362 | None:intergenic |
| CCACCTCAGAAATGTGACTG+GGG | 0.716848 | 8_4:-52342850 | Msa1332360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATGTTTCATTTA+TGG | - | chr8_4:52340514-52340533 | Msa1332360:CDS | 10.0% |
| !! | TTATTATGAAAATAAATAAC+AGG | + | chr8_4:52340692-52340711 | None:intergenic | 10.0% |
| !!! | ATTTTGTTAAATGCAATAAA+AGG | - | chr8_4:52340648-52340667 | Msa1332360:intron | 15.0% |
| !!! | TATATATTTGCAGTTATTTT+TGG | - | chr8_4:52341476-52341495 | Msa1332360:intron | 15.0% |
| !! | CAATTAATATTCAACTAATT+CGG | - | chr8_4:52342312-52342331 | Msa1332360:intron | 15.0% |
| !! | ATTTATGAATTTACTTCAAA+CGG | + | chr8_4:52342412-52342431 | None:intergenic | 15.0% |
| !!! | CTTTATGGTTTTTCATAAAT+GGG | + | chr8_4:52340176-52340195 | None:intergenic | 20.0% |
| !!! | TCTTTATGGTTTTTCATAAA+TGG | + | chr8_4:52340177-52340196 | None:intergenic | 20.0% |
| !! | AATCAAAGTTAAGATCTTTA+TGG | + | chr8_4:52340191-52340210 | None:intergenic | 20.0% |
| !!! | TCTTAACTTTGATTGATTTT+AGG | - | chr8_4:52340197-52340216 | Msa1332360:three_prime_UTR | 20.0% |
| !!! | TTTGATTGATTTTAGGAAAT+GGG | - | chr8_4:52340204-52340223 | Msa1332360:three_prime_UTR | 20.0% |
| !!! | TTAACAAAATTTTGTTGTTG+AGG | + | chr8_4:52340638-52340657 | None:intergenic | 20.0% |
| !!! | ACATTTTCTTTCAAAACAAA+TGG | + | chr8_4:52340868-52340887 | None:intergenic | 20.0% |
| !! | TTGAAAGAAAATGTTAAGTT+TGG | - | chr8_4:52340874-52340893 | Msa1332360:intron | 20.0% |
| !!! | TGTTTTTTGATAACTCTAAA+GGG | + | chr8_4:52340984-52341003 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTGATAACTCTAA+AGG | + | chr8_4:52340985-52341004 | None:intergenic | 20.0% |
| !! | CCAAATTATAAAAGTTGAAT+CGG | + | chr8_4:52341046-52341065 | None:intergenic | 20.0% |
| !!! | TATATTGACATTTTTAACGA+AGG | + | chr8_4:52341280-52341299 | None:intergenic | 20.0% |
| !! | CGTTAAAAATGTCAATATAT+TGG | - | chr8_4:52341281-52341300 | Msa1332360:CDS | 20.0% |
| !! | TTAGACTGAAAATCAAAAAA+TGG | - | chr8_4:52341309-52341328 | Msa1332360:CDS | 20.0% |
| !!! | AAATTTAATTTGTTGACCAA+TGG | + | chr8_4:52341409-52341428 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTAAAAGGAAAAT+AGG | - | chr8_4:52341492-52341511 | Msa1332360:intron | 20.0% |
| !! | TAAGGAATTCTTAAACAAAT+CGG | - | chr8_4:52341704-52341723 | Msa1332360:CDS | 20.0% |
| !! | TAATCAAATTCGTGAAAATT+GGG | + | chr8_4:52341819-52341838 | None:intergenic | 20.0% |
| !! | ATAATCAAATTCGTGAAAAT+TGG | + | chr8_4:52341820-52341839 | None:intergenic | 20.0% |
| !!! | AACTTTGAAGTACATTTTTA+AGG | + | chr8_4:52341939-52341958 | None:intergenic | 20.0% |
| !!! | TTTTAGTACCTATAATAATC+TGG | + | chr8_4:52342254-52342273 | None:intergenic | 20.0% |
| !! | TTTATGAATTTACTTCAAAC+GGG | + | chr8_4:52342411-52342430 | None:intergenic | 20.0% |
| !! | TTTGAAGAATCAACATATAT+AGG | + | chr8_4:52342917-52342936 | None:intergenic | 20.0% |
| ! | ATGACAAAAACTTTGTAACA+AGG | + | chr8_4:52340077-52340096 | None:intergenic | 25.0% |
| ! | AACTATAAAAAAAACAGTCG+AGG | + | chr8_4:52340141-52340160 | None:intergenic | 25.0% |
| !!! | CGACTGTTTTTTTTATAGTT+TGG | - | chr8_4:52340141-52340160 | Msa1332360:three_prime_UTR | 25.0% |
| !!! | CTTTGATTGATTTTAGGAAA+TGG | - | chr8_4:52340203-52340222 | Msa1332360:three_prime_UTR | 25.0% |
| !!! | TATGTTTTTTTGGATGTACT+TGG | - | chr8_4:52340248-52340267 | Msa1332360:three_prime_UTR | 25.0% |
| ! | TGTAAATTATCTCTTTCACT+AGG | + | chr8_4:52340589-52340608 | None:intergenic | 25.0% |
| !!! | TTATGATTTTAATCTCATGC+AGG | - | chr8_4:52340611-52340630 | Msa1332360:intron | 25.0% |
| !! | CCGATTCAACTTTTATAATT+TGG | - | chr8_4:52341043-52341062 | Msa1332360:CDS | 25.0% |
| ! | TGAAGTTTACCATTAATCAA+TGG | - | chr8_4:52341077-52341096 | Msa1332360:CDS | 25.0% |
| !! | ATATACCTACCATTGATTAA+TGG | + | chr8_4:52341089-52341108 | None:intergenic | 25.0% |
| ! | TTCAGGGTTAATGTTATATT+TGG | - | chr8_4:52341109-52341128 | Msa1332360:CDS | 25.0% |
| ! | AGTATAACGTATAAAAGACT+CGG | + | chr8_4:52341206-52341225 | None:intergenic | 25.0% |
| !! | TTGAAATTGATAATAGCCAT+TGG | - | chr8_4:52341390-52341409 | Msa1332360:CDS | 25.0% |
| !!! | TGCAGTTATTTTTGGTTAAA+AGG | - | chr8_4:52341484-52341503 | Msa1332360:intron | 25.0% |
| ! | AAAGGAAAATAGGAATTACA+AGG | - | chr8_4:52341502-52341521 | Msa1332360:intron | 25.0% |
| !!! | TTACAAGGAGCTTTTTTTAT+TGG | - | chr8_4:52341517-52341536 | Msa1332360:CDS | 25.0% |
| !!! | TGTTTTAAGAAAGATAGTTC+AGG | - | chr8_4:52341611-52341630 | Msa1332360:CDS | 25.0% |
| !!! | AAATTCTTATGCTGTTTTGT+TGG | + | chr8_4:52341785-52341804 | None:intergenic | 25.0% |
| ! | TACCTATAATAATCTGGATT+TGG | + | chr8_4:52342248-52342267 | None:intergenic | 25.0% |
| !!! | AAAGGTCCTATTTTGAATTT+AGG | - | chr8_4:52342383-52342402 | Msa1332360:CDS | 25.0% |
| !!! | AAGGTCCTATTTTGAATTTA+GGG | - | chr8_4:52342384-52342403 | Msa1332360:CDS | 25.0% |
| !!! | TGCTATTTTGTGACATTAAT+AGG | - | chr8_4:52342437-52342456 | Msa1332360:CDS | 25.0% |
| !!! | GCTATTTTGTGACATTAATA+GGG | - | chr8_4:52342438-52342457 | Msa1332360:CDS | 25.0% |
| ! | AAATTTACATAGCCAAACTA+TGG | - | chr8_4:52342835-52342854 | Msa1332360:CDS | 25.0% |
| !! | ATTTTCTTATCAATCACCAA+GGG | + | chr8_4:52343052-52343071 | None:intergenic | 25.0% |
| !! | AATTTTCTTATCAATCACCA+AGG | + | chr8_4:52343053-52343072 | None:intergenic | 25.0% |
| GGTTATCAAAAAAAGCTTCT+GGG | - | chr8_4:52340225-52340244 | Msa1332360:three_prime_UTR | 30.0% | |
| ! | ATTCATGGCAAAGCTTTTAT+TGG | - | chr8_4:52340348-52340367 | Msa1332360:CDS | 30.0% |
| TTGTTTGTGCAACTATTGAT+TGG | - | chr8_4:52340388-52340407 | Msa1332360:CDS | 30.0% | |
| !! | TCTAATTTTCAAGGGTGAAA+AGG | + | chr8_4:52340782-52340801 | None:intergenic | 30.0% |
| TTCACCCTTGAAAATTAGAT+TGG | - | chr8_4:52340783-52340802 | Msa1332360:CDS | 30.0% | |
| TCACCCTTGAAAATTAGATT+GGG | - | chr8_4:52340784-52340803 | Msa1332360:CDS | 30.0% | |
| ATATGTGACTTTATCTTGCA+AGG | + | chr8_4:52340815-52340834 | None:intergenic | 30.0% | |
| TTGCAAGATAAAGTCACATA+TGG | - | chr8_4:52340814-52340833 | Msa1332360:intron | 30.0% | |
| TGCAAGATAAAGTCACATAT+GGG | - | chr8_4:52340815-52340834 | Msa1332360:intron | 30.0% | |
| TTCAAAACAAATGGAGTACA+AGG | + | chr8_4:52340859-52340878 | None:intergenic | 30.0% | |
| ! | TTAAGTTTGGTTTCACTCAA+GGG | - | chr8_4:52340887-52340906 | Msa1332360:intron | 30.0% |
| GTTTACCATTAATCAATGGT+AGG | - | chr8_4:52341081-52341100 | Msa1332360:CDS | 30.0% | |
| ATCAATGGTAGGTATATTTC+AGG | - | chr8_4:52341092-52341111 | Msa1332360:CDS | 30.0% | |
| TCAATGGTAGGTATATTTCA+GGG | - | chr8_4:52341093-52341112 | Msa1332360:CDS | 30.0% | |
| GCAAAGAAATACACTATTCA+TGG | - | chr8_4:52341229-52341248 | Msa1332360:intron | 30.0% | |
| AGAAATACACTATTCATGGT+TGG | - | chr8_4:52341233-52341252 | Msa1332360:intron | 30.0% | |
| GAAATACACTATTCATGGTT+GGG | - | chr8_4:52341234-52341253 | Msa1332360:CDS | 30.0% | |
| ! | ATCAATTTCAAGTGAACTCA+TGG | + | chr8_4:52341381-52341400 | None:intergenic | 30.0% |
| ACTGATATTCCGAAAAATCA+CGG | + | chr8_4:52342070-52342089 | None:intergenic | 30.0% | |
| ! | TGATTATCAGATAAAGCGTT+AGG | + | chr8_4:52342107-52342126 | None:intergenic | 30.0% |
| CTGATAATCACATCAAATAC+AGG | - | chr8_4:52342117-52342136 | Msa1332360:CDS | 30.0% | |
| TCACATCAAATACAGGTATT+TGG | - | chr8_4:52342124-52342143 | Msa1332360:CDS | 30.0% | |
| TGCCAAATCCAGATTATTAT+AGG | - | chr8_4:52342243-52342262 | Msa1332360:intron | 30.0% | |
| ! | CACAATACTGTTTCTCAATT+TGG | - | chr8_4:52342700-52342719 | Msa1332360:intron | 30.0% |
| TGGTTTCTTGGCAAAATTTA+AGG | + | chr8_4:52342756-52342775 | None:intergenic | 30.0% | |
| TTCCATTTAGTACCATAGTT+TGG | + | chr8_4:52342850-52342869 | None:intergenic | 30.0% | |
| ACATATATAGGATTCAGTGA+AGG | + | chr8_4:52342905-52342924 | None:intergenic | 30.0% | |
| TGAGCAAATACAATAGAAAG+AGG | + | chr8_4:52342956-52342975 | None:intergenic | 30.0% | |
| AGTACTGTTGTTAGATTGTT+TGG | - | chr8_4:52343095-52343114 | Msa1332360:five_prime_UTR | 30.0% | |
| CAAAACCAATCAAAATCCTA+GGG | + | chr8_4:52343130-52343149 | None:intergenic | 30.0% | |
| AATGAACTGAATAGTGCATT+GGG | + | chr8_4:52343159-52343178 | None:intergenic | 30.0% | |
| TAATGAACTGAATAGTGCAT+TGG | + | chr8_4:52343160-52343179 | None:intergenic | 30.0% | |
| GGAAGTTGTTACAAGTACAA+TGG | + | chr8_4:52340056-52340075 | None:intergenic | 35.0% | |
| GGGTTATCAAAAAAAGCTTC+TGG | - | chr8_4:52340224-52340243 | Msa1332360:three_prime_UTR | 35.0% | |
| !!! | AGCTTCTGGGTATGTTTTTT+TGG | - | chr8_4:52340238-52340257 | Msa1332360:three_prime_UTR | 35.0% |
| TTCATTGGAGTGAATTGCAT+AGG | - | chr8_4:52340288-52340307 | Msa1332360:CDS | 35.0% | |
| GAAATGATTCAGCTGTGAAA+GGG | - | chr8_4:52340316-52340335 | Msa1332360:CDS | 35.0% | |
| AAATGATTCAGCTGTGAAAG+GGG | - | chr8_4:52340317-52340336 | Msa1332360:CDS | 35.0% | |
| ! | ATGGCAAAGCTTTTATTGGA+AGG | - | chr8_4:52340352-52340371 | Msa1332360:CDS | 35.0% |
| ! | TTTGTGCAACTATTGATTGG+TGG | - | chr8_4:52340391-52340410 | Msa1332360:CDS | 35.0% |
| TCATGCTTCTCTTCTTAATC+TGG | - | chr8_4:52340452-52340471 | Msa1332360:CDS | 35.0% | |
| AAAGGCTGCAAAACATTCAA+AGG | + | chr8_4:52340764-52340783 | None:intergenic | 35.0% | |
| ! | CCACCCAATCTAATTTTCAA+GGG | + | chr8_4:52340790-52340809 | None:intergenic | 35.0% |
| ! | ACCACCCAATCTAATTTTCA+AGG | + | chr8_4:52340791-52340810 | None:intergenic | 35.0% |
| ! | GTTAAGTTTGGTTTCACTCA+AGG | - | chr8_4:52340886-52340905 | Msa1332360:intron | 35.0% |
| !! | AACAGCTTTTTCCAAAAAGC+AGG | - | chr8_4:52340940-52340959 | Msa1332360:intron | 35.0% |
| !! | ACAGCTTTTTCCAAAAAGCA+GGG | - | chr8_4:52340941-52340960 | Msa1332360:intron | 35.0% |
| !! | TGATTCTTTACCCTGCTTTT+TGG | + | chr8_4:52340954-52340973 | None:intergenic | 35.0% |
| ! | TGTGTTTCTATGCGTGAATT+AGG | - | chr8_4:52341014-52341033 | Msa1332360:intron | 35.0% |
| TTTGGATTAAATGCTCTTGC+TGG | - | chr8_4:52341127-52341146 | Msa1332360:CDS | 35.0% | |
| ACTATTCATGGTTGGGAATT+CGG | - | chr8_4:52341241-52341260 | Msa1332360:CDS | 35.0% | |
| !!! | AGGAGCTTTTTTTATTGGAC+AGG | - | chr8_4:52341522-52341541 | Msa1332360:CDS | 35.0% |
| !! | CTTTGAGGCAAATTGGTTTA+AGG | - | chr8_4:52341686-52341705 | Msa1332360:CDS | 35.0% |
| TCCAAGGTTATAAATGTGGT+GGG | + | chr8_4:52341751-52341770 | None:intergenic | 35.0% | |
| ACAGAAAGCTACTTACATAC+AGG | - | chr8_4:52341841-52341860 | Msa1332360:intron | 35.0% | |
| AGAATTCTTTCAACTAAGCC+CGG | + | chr8_4:52341874-52341893 | None:intergenic | 35.0% | |
| ! | ATGCATTTGTCAACAGCTTT+TGG | - | chr8_4:52342031-52342050 | Msa1332360:CDS | 35.0% |
| ! | TGTAACGAACCGTGATTTTT+CGG | - | chr8_4:52342058-52342077 | Msa1332360:CDS | 35.0% |
| TCGGAATATCAGTATTCAGT+AGG | - | chr8_4:52342077-52342096 | Msa1332360:CDS | 35.0% | |
| ACTTTGATAGGAGGAAACTA+TGG | - | chr8_4:52342197-52342216 | Msa1332360:intron | 35.0% | |
| TTTCTTACAGTGCTCTTCTT+TGG | - | chr8_4:52342473-52342492 | Msa1332360:CDS | 35.0% | |
| GATCTTCTTTGTTCCATAGA+AGG | + | chr8_4:52342533-52342552 | None:intergenic | 35.0% | |
| AACTTATGCACATTGTGCAA+AGG | - | chr8_4:52342555-52342574 | Msa1332360:intron | 35.0% | |
| TGATGATACTATCTTGCAGA+AGG | - | chr8_4:52342673-52342692 | Msa1332360:intron | 35.0% | |
| GATGATACTATCTTGCAGAA+GGG | - | chr8_4:52342674-52342693 | Msa1332360:intron | 35.0% | |
| ATTATGAGTGGATGGTTTCT+TGG | + | chr8_4:52342768-52342787 | None:intergenic | 35.0% | |
| AAACCATCCACTCATAATGT+GGG | - | chr8_4:52342770-52342789 | Msa1332360:intron | 35.0% | |
| ! | AGAGTACCATTTAACAGCAA+AGG | - | chr8_4:52342808-52342827 | Msa1332360:intron | 35.0% |
| TACCATTTAACAGCAAAGGA+TGG | - | chr8_4:52342812-52342831 | Msa1332360:intron | 35.0% | |
| !! | TTCCATCCTTTGCTGTTAAA+TGG | + | chr8_4:52342817-52342836 | None:intergenic | 35.0% |
| AGCCAAACTATGGTACTAAA+TGG | - | chr8_4:52342845-52342864 | Msa1332360:CDS | 35.0% | |
| ATTCTAAGTGTAGATTCAGC+TGG | - | chr8_4:52342872-52342891 | Msa1332360:CDS | 35.0% | |
| CTTCAAAGCCAATAACAGTT+AGG | - | chr8_4:52342930-52342949 | Msa1332360:CDS | 35.0% | |
| ACTGTTGTTAGATTGTTTGG+AGG | - | chr8_4:52343098-52343117 | Msa1332360:five_prime_UTR | 35.0% | |
| CTGTTGTTAGATTGTTTGGA+GGG | - | chr8_4:52343099-52343118 | Msa1332360:five_prime_UTR | 35.0% | |
| GCAAAACCAATCAAAATCCT+AGG | + | chr8_4:52343131-52343150 | None:intergenic | 35.0% | |
| CAGTTTCATGTGTATGTTGC+TGG | + | chr8_4:52340014-52340033 | None:intergenic | 40.0% | |
| AGCTTCAGTTTCAGCTTCAT+TGG | - | chr8_4:52340273-52340292 | Msa1332360:exon | 40.0% | |
| GGAGTGAATTGCATAGGATT+AGG | - | chr8_4:52340294-52340313 | Msa1332360:CDS | 40.0% | |
| GGAAATGATTCAGCTGTGAA+AGG | - | chr8_4:52340315-52340334 | Msa1332360:CDS | 40.0% | |
| AAAGGGGTTGTTGTCATTCA+TGG | - | chr8_4:52340333-52340352 | Msa1332360:CDS | 40.0% | |
| CCCTTGAAAATTAGATTGGG+TGG | - | chr8_4:52340787-52340806 | Msa1332360:intron | 40.0% | |
| GTGCTTACCAATGCAAAGAT+GGG | - | chr8_4:52340909-52340928 | Msa1332360:intron | 40.0% | |
| TGGACAGGTAATGAATTGTG+TGG | - | chr8_4:52341537-52341556 | Msa1332360:CDS | 40.0% | |
| TAGTTCAGGCTGTATATCGA+AGG | - | chr8_4:52341625-52341644 | Msa1332360:CDS | 40.0% | |
| AGTTCAGGCTGTATATCGAA+GGG | - | chr8_4:52341626-52341645 | Msa1332360:CDS | 40.0% | |
| ! | GGTGCAATGATTAGTGGTTT+TGG | + | chr8_4:52341657-52341676 | None:intergenic | 40.0% |
| AAACCACTAATCATTGCACC+TGG | - | chr8_4:52341657-52341676 | Msa1332360:CDS | 40.0% | |
| ACCCACCACATTTATAACCT+TGG | - | chr8_4:52341747-52341766 | Msa1332360:intron | 40.0% | |
| GTCCAAGGTTATAAATGTGG+TGG | + | chr8_4:52341752-52341771 | None:intergenic | 40.0% | |
| CTGGTCCAAGGTTATAAATG+TGG | + | chr8_4:52341755-52341774 | None:intergenic | 40.0% | |
| CACATTTATAACCTTGGACC+AGG | - | chr8_4:52341753-52341772 | Msa1332360:intron | 40.0% | |
| !! | CTGTTTTGTTGGAACATACC+TGG | + | chr8_4:52341774-52341793 | None:intergenic | 40.0% |
| GAAAGCTACTTACATACAGG+AGG | - | chr8_4:52341844-52341863 | Msa1332360:intron | 40.0% | |
| CTCAATCCATCCTCTCTTAA+TGG | - | chr8_4:52341892-52341911 | Msa1332360:intron | 40.0% | |
| TACAGGTATTTGGATCAGCT+TGG | - | chr8_4:52342134-52342153 | Msa1332360:CDS | 40.0% | |
| TACTGCAGACAGACTTTGAT+AGG | - | chr8_4:52342185-52342204 | Msa1332360:intron | 40.0% | |
| TGGATTTGGCATGAAAGTAG+TGG | + | chr8_4:52342234-52342253 | None:intergenic | 40.0% | |
| AGCATCACAGACACTAATGA+AGG | + | chr8_4:52342339-52342358 | None:intergenic | 40.0% | |
| ! | ATTGCCTGCAACTTTGAGAA+AGG | - | chr8_4:52342365-52342384 | Msa1332360:CDS | 40.0% |
| CGGGACCCTAAATTCAAAAT+AGG | + | chr8_4:52342392-52342411 | None:intergenic | 40.0% | |
| GAAACCATCCACTCATAATG+TGG | - | chr8_4:52342769-52342788 | Msa1332360:intron | 40.0% | |
| TGATTCTCCCACATTATGAG+TGG | + | chr8_4:52342780-52342799 | None:intergenic | 40.0% | |
| GAAAGAGGCCTAACTGTTAT+TGG | + | chr8_4:52342941-52342960 | None:intergenic | 40.0% | |
| CACTAGGCTAAACCGAAAAT+CGG | - | chr8_4:52343023-52343042 | Msa1332360:CDS | 40.0% | |
| GACATTCAGTTTCTTGCCTT+AGG | - | chr8_4:52343213-52343232 | Msa1332360:five_prime_UTR | 40.0% | |
| AGAAAACGACTCACTACCTA+AGG | + | chr8_4:52343232-52343251 | None:intergenic | 40.0% | |
| ! | ACTGTACTGTCTTTTGCAGC+AGG | - | chr8_4:52340030-52340049 | Msa1332360:three_prime_UTR | 45.0% |
| TTACTCTGCTGTAGTAGCAG+AGG | + | chr8_4:52340113-52340132 | None:intergenic | 45.0% | |
| GGTGCTTACCAATGCAAAGA+TGG | - | chr8_4:52340908-52340927 | Msa1332360:intron | 45.0% | |
| AGCTCATCCCATCTTTGCAT+TGG | + | chr8_4:52340919-52340938 | None:intergenic | 45.0% | |
| TCGGCATTAGTGTAGTTCCA+AGG | + | chr8_4:52341187-52341206 | None:intergenic | 45.0% | |
| ! | AGTGAACTCATGGCTTGTGA+CGG | + | chr8_4:52341371-52341390 | None:intergenic | 45.0% |
| GGTAATGAATTGTGTGGAGC+TGG | - | chr8_4:52341543-52341562 | Msa1332360:CDS | 45.0% | |
| !! | GAGGCTTCTTTGAGGCAAAT+TGG | - | chr8_4:52341679-52341698 | Msa1332360:CDS | 45.0% |
| ATCGGACGAATCCACAAATG+TGG | - | chr8_4:52341722-52341741 | Msa1332360:CDS | 45.0% | |
| CTTACATACAGGAGGTGATC+CGG | - | chr8_4:52341852-52341871 | Msa1332360:intron | 45.0% | |
| TTACATACAGGAGGTGATCC+GGG | - | chr8_4:52341853-52341872 | Msa1332360:intron | 45.0% | |
| TCCATCCTCTCTTAATGGAG+TGG | - | chr8_4:52341897-52341916 | Msa1332360:intron | 45.0% | |
| AAGAACCTCAGCTCAAGCAT+GGG | - | chr8_4:52341960-52341979 | Msa1332360:intron | 45.0% | |
| CTTGGCATGTCAGCTACTTA+TGG | - | chr8_4:52342152-52342171 | Msa1332360:CDS | 45.0% | |
| TGCAGACAGACTTTGATAGG+AGG | - | chr8_4:52342188-52342207 | Msa1332360:intron | 45.0% | |
| AGGACCTTTCTCAAAGTTGC+AGG | + | chr8_4:52342372-52342391 | None:intergenic | 45.0% | |
| TTCCATAGAAGGTAGCTGAC+AGG | + | chr8_4:52342522-52342541 | None:intergenic | 45.0% | |
| ! | GGCAAAATTTAAGGCCACTC+TGG | + | chr8_4:52342747-52342766 | None:intergenic | 45.0% |
| TCTCCCACATTATGAGTGGA+TGG | + | chr8_4:52342776-52342795 | None:intergenic | 45.0% | |
| ! | CAAGCTTTAACAGCAGCATC+TGG | + | chr8_4:52342983-52343002 | None:intergenic | 45.0% |
| ! | TTGCAGCTAGCTTAGCTCAA+TGG | - | chr8_4:52343000-52343019 | Msa1332360:CDS | 45.0% |
| TAGCTTAGCTCAATGGCACT+AGG | - | chr8_4:52343007-52343026 | Msa1332360:CDS | 45.0% | |
| ! | AACCGAAAATCGGTTTCCCT+TGG | - | chr8_4:52343033-52343052 | Msa1332360:CDS | 45.0% |
| !! | CACCAAGGGAAACCGATTTT+CGG | + | chr8_4:52343038-52343057 | None:intergenic | 45.0% |
| !! | CGAAGCCCTAGGATTTTGAT+TGG | - | chr8_4:52343122-52343141 | Msa1332360:five_prime_UTR | 45.0% |
| GCCACCTCAGAAATGTGACT+GGG | - | chr8_4:52340413-52340432 | Msa1332360:CDS | 50.0% | |
| CCACCTCAGAAATGTGACTG+GGG | - | chr8_4:52340414-52340433 | Msa1332360:CDS | 50.0% | |
| CTTCCCCAGTCACATTTCTG+AGG | + | chr8_4:52340420-52340439 | None:intergenic | 50.0% | |
| TGACTGGGGAAGATGCAGTT+GGG | - | chr8_4:52340428-52340447 | Msa1332360:CDS | 50.0% | |
| GAATCCCAGAGTTCTGCTGT+TGG | - | chr8_4:52341160-52341179 | Msa1332360:intron | 50.0% | |
| AGGTCCAACAGCAGAACTCT+GGG | + | chr8_4:52341167-52341186 | None:intergenic | 50.0% | |
| AAGGTCCAACAGCAGAACTC+TGG | + | chr8_4:52341168-52341187 | None:intergenic | 50.0% | |
| AGAGTTCTGCTGTTGGACCT+TGG | - | chr8_4:52341167-52341186 | Msa1332360:intron | 50.0% | |
| GAATTGTGTGGAGCTGGAAC+TGG | - | chr8_4:52341549-52341568 | Msa1332360:CDS | 50.0% | |
| CCTCCAGGTGCAATGATTAG+TGG | + | chr8_4:52341663-52341682 | None:intergenic | 50.0% | |
| CCACTAATCATTGCACCTGG+AGG | - | chr8_4:52341660-52341679 | Msa1332360:CDS | 50.0% | |
| TTTGCCTCAAAGAAGCCTCC+AGG | + | chr8_4:52341678-52341697 | None:intergenic | 50.0% | |
| GTTGGAACATACCTGGTCCA+AGG | + | chr8_4:52341767-52341786 | None:intergenic | 50.0% | |
| GCCACTCCATTAAGAGAGGA+TGG | + | chr8_4:52341901-52341920 | None:intergenic | 50.0% | |
| GTCAGCCACTCCATTAAGAG+AGG | + | chr8_4:52341905-52341924 | None:intergenic | 50.0% | |
| CAAGAACCTCAGCTCAAGCA+TGG | - | chr8_4:52341959-52341978 | Msa1332360:intron | 50.0% | |
| ! | TTGGGGTAGTGGTCATCATC+TGG | - | chr8_4:52342002-52342021 | Msa1332360:intron | 50.0% |
| !! | TCTTCTTTGGCACCGACTCA+TGG | - | chr8_4:52342486-52342505 | Msa1332360:CDS | 50.0% |
| !! | CTTCTTTGGCACCGACTCAT+GGG | - | chr8_4:52342487-52342506 | Msa1332360:CDS | 50.0% |
| GTCCTGTCAGCTACCTTCTA+TGG | - | chr8_4:52342517-52342536 | Msa1332360:intron | 50.0% | |
| GGCCACCTCAGAAATGTGAC+TGG | - | chr8_4:52340412-52340431 | Msa1332360:CDS | 55.0% | |
| ! | CCCCAGTCACATTTCTGAGG+TGG | + | chr8_4:52340417-52340436 | None:intergenic | 55.0% |
| GTGACTGGGGAAGATGCAGT+TGG | - | chr8_4:52340427-52340446 | Msa1332360:CDS | 55.0% | |
| GACTGGGGAAGATGCAGTTG+GGG | - | chr8_4:52340429-52340448 | Msa1332360:CDS | 55.0% | |
| TGCACCTGGAGGCTTCTTTG+AGG | - | chr8_4:52341671-52341690 | Msa1332360:CDS | 55.0% | |
| !! | GTGGTGGGTGACCACATTTG+TGG | + | chr8_4:52341736-52341755 | None:intergenic | 55.0% |
| ACCTCAGCTCAAGCATGGGT+TGG | - | chr8_4:52341964-52341983 | Msa1332360:intron | 55.0% | |
| ACCAACCCATGCTTGAGCTG+AGG | + | chr8_4:52341968-52341987 | None:intergenic | 55.0% | |
| !! | CAAGCATGGGTTGGTGAAGC+AGG | - | chr8_4:52341973-52341992 | Msa1332360:intron | 55.0% |
| !! | CATGGGTTGGTGAAGCAGGA+GGG | - | chr8_4:52341977-52341996 | Msa1332360:intron | 55.0% |
| !! | ATGGGTTGGTGAAGCAGGAG+GGG | - | chr8_4:52341978-52341997 | Msa1332360:intron | 55.0% |
| CACCACTGTTCAAGCCAGAG+TGG | - | chr8_4:52342730-52342749 | Msa1332360:intron | 55.0% | |
| !! | GCATGGGTTGGTGAAGCAGG+AGG | - | chr8_4:52341976-52341995 | Msa1332360:intron | 60.0% |
| TTGGTGAAGCAGGAGGGGCT+TGG | - | chr8_4:52341983-52342002 | Msa1332360:intron | 60.0% | |
| TGGTGAAGCAGGAGGGGCTT+GGG | - | chr8_4:52341984-52342003 | Msa1332360:intron | 60.0% | |
| !! | CTTTGGCACCGACTCATGGG+AGG | - | chr8_4:52342490-52342509 | Msa1332360:intron | 60.0% |
| GGACACGTCCTCCCATGAGT+CGG | + | chr8_4:52342501-52342520 | None:intergenic | 60.0% | |
| ! | GGCCACTCTGGCTTGAACAG+TGG | + | chr8_4:52342735-52342754 | None:intergenic | 60.0% |
| TGTTTGGAGGGCGAAGCCCT+AGG | - | chr8_4:52343111-52343130 | Msa1332360:five_prime_UTR | 60.0% | |
| GGTGAAGCAGGAGGGGCTTG+GGG | - | chr8_4:52341985-52342004 | Msa1332360:intron | 65.0% | |
| GCAGGAGGGGCTTGGGGTAG+TGG | - | chr8_4:52341991-52342010 | Msa1332360:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 52340001 | 52343285 | 52340001 | ID=Msa1332360;Name=Msa1332360 |
| chr8_4 | mRNA | 52340001 | 52343285 | 52340001 | ID=Msa1332360-mRNA-1;Parent=Msa1332360;Name=Msa1332360-mRNA-1;_AED=0.22;_eAED=0.22;_QI=221|1|1|1|1|1|9|276|528 |
| chr8_4 | exon | 52340001 | 52340594 | 52340001 | ID=Msa1332360-mRNA-1:exon:15702;Parent=Msa1332360-mRNA-1 |
| chr8_4 | exon | 52340704 | 52340803 | 52340704 | ID=Msa1332360-mRNA-1:exon:15701;Parent=Msa1332360-mRNA-1 |
| chr8_4 | exon | 52341022 | 52341147 | 52341022 | ID=Msa1332360-mRNA-1:exon:15700;Parent=Msa1332360-mRNA-1 |
| chr8_4 | exon | 52341234 | 52341423 | 52341234 | ID=Msa1332360-mRNA-1:exon:15699;Parent=Msa1332360-mRNA-1 |
| chr8_4 | exon | 52341512 | 52341742 | 52341512 | ID=Msa1332360-mRNA-1:exon:15698;Parent=Msa1332360-mRNA-1 |
| chr8_4 | exon | 52342024 | 52342172 | 52342024 | ID=Msa1332360-mRNA-1:exon:15697;Parent=Msa1332360-mRNA-1 |
| chr8_4 | exon | 52342324 | 52342507 | 52342324 | ID=Msa1332360-mRNA-1:exon:15696;Parent=Msa1332360-mRNA-1 |
| chr8_4 | exon | 52342617 | 52342653 | 52342617 | ID=Msa1332360-mRNA-1:exon:15695;Parent=Msa1332360-mRNA-1 |
| chr8_4 | exon | 52342813 | 52343285 | 52342813 | ID=Msa1332360-mRNA-1:exon:15694;Parent=Msa1332360-mRNA-1 |
| chr8_4 | five_prime_UTR | 52343065 | 52343285 | 52343065 | ID=Msa1332360-mRNA-1:five_prime_utr;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52342813 | 52343064 | 52342813 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52342617 | 52342653 | 52342617 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52342324 | 52342507 | 52342324 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52342024 | 52342172 | 52342024 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52341512 | 52341742 | 52341512 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52341234 | 52341423 | 52341234 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52341022 | 52341147 | 52341022 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52340704 | 52340803 | 52340704 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | CDS | 52340277 | 52340594 | 52340277 | ID=Msa1332360-mRNA-1:cds;Parent=Msa1332360-mRNA-1 |
| chr8_4 | three_prime_UTR | 52340001 | 52340276 | 52340001 | ID=Msa1332360-mRNA-1:three_prime_utr;Parent=Msa1332360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
