Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448390 | sp|Q9FZP1|HPSE3_ARATH | 62.109 | 512 | 176 | 3 | 26 | 519 | 25 | 536 | 0.0 | 679 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448390 | G7JGL1 | 94.242 | 521 | 27 | 2 | 1 | 519 | 10 | 529 | 0.0 | 989 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1301440 | Msa1448390 | 0.800311 | 1.529688e-48 | -8.615850e-47 |
| Msa1332360 | Msa1448390 | 0.963697 | 2.104314e-122 | -8.615850e-47 |
| Msa1333820 | Msa1448390 | 0.951405 | 2.187588e-109 | -8.615850e-47 |
| Msa0260250 | Msa1448390 | 0.800492 | 1.405276e-48 | -8.615850e-47 |
| Msa0260290 | Msa1448390 | 0.802200 | 6.279568e-49 | -8.615850e-47 |
| Msa0304250 | Msa1448390 | 0.803810 | 2.918525e-49 | -8.615850e-47 |
| Msa1215680 | Msa1448390 | 0.965788 | 4.624345e-125 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448390 | MtrunA17_Chr4g0064851 | 94.242 | 521 | 27 | 2 | 1 | 519 | 10 | 529 | 0.0 | 989 |
| Msa1448390 | MtrunA17_Chr2g0304251 | 66.034 | 527 | 163 | 4 | 6 | 518 | 12 | 536 | 0.0 | 713 |
| Msa1448390 | MtrunA17_Chr3g0086291 | 50.302 | 497 | 236 | 6 | 30 | 519 | 25 | 517 | 3.56e-173 | 499 |
| Msa1448390 | MtrunA17_Chr3g0086241 | 47.706 | 545 | 253 | 9 | 5 | 519 | 1 | 543 | 7.41e-173 | 498 |
| Msa1448390 | MtrunA17_Chr3g0086271 | 49.023 | 512 | 253 | 5 | 12 | 519 | 8 | 515 | 8.33e-173 | 497 |
| Msa1448390 | MtrunA17_Chr4g0061271 | 48.069 | 518 | 240 | 5 | 30 | 518 | 25 | 542 | 1.14e-166 | 483 |
| Msa1448390 | MtrunA17_Chr3g0086251 | 48.362 | 519 | 259 | 7 | 5 | 519 | 111 | 624 | 5.28e-165 | 481 |
| Msa1448390 | MtrunA17_Chr5g0418671 | 45.769 | 520 | 257 | 5 | 2 | 518 | 6 | 503 | 2.70e-163 | 473 |
| Msa1448390 | MtrunA17_Chr4g0064821 | 67.544 | 228 | 60 | 3 | 159 | 386 | 3 | 216 | 2.40e-103 | 309 |
| Msa1448390 | MtrunA17_Chr4g0064811 | 74.257 | 101 | 25 | 1 | 419 | 519 | 1 | 100 | 1.09e-43 | 150 |
| Msa1448390 | MtrunA17_Chr8g0383141 | 69.697 | 99 | 17 | 2 | 397 | 490 | 10 | 100 | 5.87e-38 | 135 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1448390 | AT5G34940.2 | 62.109 | 512 | 176 | 3 | 26 | 519 | 25 | 536 | 0.0 | 679 |
| Msa1448390 | AT5G34940.1 | 60.848 | 401 | 141 | 2 | 135 | 519 | 1 | 401 | 0.0 | 515 |
| Msa1448390 | AT5G34940.3 | 63.585 | 357 | 128 | 1 | 26 | 380 | 25 | 381 | 8.11e-174 | 495 |
| Msa1448390 | AT5G61250.3 | 46.887 | 514 | 250 | 3 | 29 | 519 | 26 | 539 | 1.65e-173 | 500 |
| Msa1448390 | AT5G61250.1 | 46.887 | 514 | 250 | 3 | 29 | 519 | 26 | 539 | 1.65e-173 | 500 |
| Msa1448390 | AT5G61250.2 | 46.887 | 514 | 250 | 3 | 29 | 519 | 26 | 539 | 1.65e-173 | 500 |
| Msa1448390 | AT5G07830.1 | 47.379 | 515 | 247 | 4 | 29 | 519 | 29 | 543 | 3.04e-171 | 494 |
| Msa1448390 | AT5G34940.4 | 59.732 | 298 | 104 | 2 | 238 | 519 | 2 | 299 | 1.01e-127 | 374 |
Find 147 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAATACTGTTTCTCAATT+TGG | 0.117308 | tig0032188:+4687 | Msa1448390:CDS |
| TTCAGGGTTAATGTTATATT+TGG | 0.120242 | tig0032188:+3098 | Msa1448390:intron |
| CTTTGAGGCAAATTGGTTTA+AGG | 0.149506 | tig0032188:+3673 | Msa1448390:CDS |
| AATCAAAGTTAAGATCTTTA+TGG | 0.167612 | tig0032188:-2179 | None:intergenic |
| TGGTTTCTTGGCAAAATTTA+AGG | 0.174708 | tig0032188:-4740 | None:intergenic |
| TTCCATCCTTTGCTGTTAAA+TGG | 0.200876 | tig0032188:-4801 | None:intergenic |
| TGAAATTGACTTGAGCATTA+TGG | 0.213019 | tig0032188:-5259 | None:intergenic |
| CTCAATCCATCCTCTCTTAA+TGG | 0.220707 | tig0032188:+3879 | Msa1448390:CDS |
| GAAAGAGGCCTAACTGTTAT+TGG | 0.228064 | tig0032188:-4925 | None:intergenic |
| TCACATCAAATACAGGTATT+TGG | 0.232373 | tig0032188:+4111 | Msa1448390:intron |
| TGGTGAAGCAGGAGGGGCTT+GGG | 0.234159 | tig0032188:+3971 | Msa1448390:CDS |
| TTGGTGAAGCAGGAGGGGCT+TGG | 0.270000 | tig0032188:+3970 | Msa1448390:CDS |
| AGTACTGTTGTTAGATTGTT+TGG | 0.273075 | tig0032188:+5082 | Msa1448390:three_prime_UTR |
| TTTCTTACAGTGCTCTTCTT+TGG | 0.278856 | tig0032188:+4460 | Msa1448390:intron |
| AGCCAAACTATGGTACTAAA+TGG | 0.279353 | tig0032188:+4832 | Msa1448390:CDS |
| GGTGCAATGATTAGTGGTTT+TGG | 0.286816 | tig0032188:-3641 | None:intergenic |
| TGCCAAATCCAGATTATTAT+AGG | 0.288593 | tig0032188:+4230 | Msa1448390:CDS |
| TCATGCTTCTCTTCTTAATC+TGG | 0.289299 | tig0032188:+2442 | Msa1448390:CDS |
| TTGAAAGAAAATGTTAAGTT+TGG | 0.289585 | tig0032188:+2863 | Msa1448390:CDS |
| ACTATTCATGGTTGGGAATT+CGG | 0.306619 | tig0032188:+3230 | Msa1448390:CDS |
| ATTATGAGTGGATGGTTTCT+TGG | 0.311113 | tig0032188:-4752 | None:intergenic |
| GAGGCTTCTTTGAGGCAAAT+TGG | 0.311182 | tig0032188:+3666 | Msa1448390:CDS |
| ATGCATTTGTCAACAGCTTT+TGG | 0.315595 | tig0032188:+4018 | Msa1448390:CDS |
| GATCTTCTTTGTTCCATAGA+AGG | 0.319416 | tig0032188:-4517 | None:intergenic |
| TACCTATAATAATCTGGATT+TGG | 0.319672 | tig0032188:-4232 | None:intergenic |
| TTTGAAGAATCAACATATAT+AGG | 0.336227 | tig0032188:-4901 | None:intergenic |
| GTCCTGTCAGCTACCTTCTA+TGG | 0.336646 | tig0032188:+4504 | Msa1448390:CDS |
| GCAAAGAAATACACTATTCA+TGG | 0.338392 | tig0032188:+3218 | Msa1448390:CDS |
| TTCACCCTTGAAAATTAGAT+TGG | 0.343603 | tig0032188:+2772 | Msa1448390:CDS |
| AGCTTCAGTTTCAGCTTCAT+TGG | 0.343969 | tig0032188:+2263 | Msa1448390:CDS |
| TATGTTGCTGGCAAAGTATT+TGG | 0.347927 | tig0032188:-1990 | None:intergenic |
| TTCCATTTAGTACCATAGTT+TGG | 0.352865 | tig0032188:-4834 | None:intergenic |
| GCAGGAGGGGCTTGGGGTAG+TGG | 0.353714 | tig0032188:+3978 | Msa1448390:CDS |
| GGTGAAGCAGGAGGGGCTTG+GGG | 0.361184 | tig0032188:+3972 | Msa1448390:CDS |
| TTTGGATTAAATGCTCTTGC+TGG | 0.367787 | tig0032188:+3116 | Msa1448390:CDS |
| GGAGTGAATTGCATAGGATT+AGG | 0.368336 | tig0032188:+2284 | Msa1448390:CDS |
| CTTGGCATGTCAGCTACTTA+TGG | 0.369847 | tig0032188:+4139 | Msa1448390:CDS |
| TTGGGGTAGTGGTCATCATC+TGG | 0.378614 | tig0032188:+3989 | Msa1448390:CDS |
| GCAAAACCAATCAAAATCCT+AGG | 0.406941 | tig0032188:-5115 | None:intergenic |
| TCTTCTTTGGCACCGACTCA+TGG | 0.408072 | tig0032188:+4473 | Msa1448390:CDS |
| TTGCAAGATAAAGTCACATA+TGG | 0.412733 | tig0032188:+2803 | Msa1448390:CDS |
| CTTCAAAGCCAATAACAGTT+AGG | 0.413217 | tig0032188:+4917 | Msa1448390:CDS |
| TAAGGAATTCTTAAACAAAT+CGG | 0.416402 | tig0032188:+3691 | Msa1448390:CDS |
| CCTCCAGGTGCAATGATTAG+TGG | 0.427861 | tig0032188:-3647 | None:intergenic |
| AAAGGGGTTGTTGTCATTCA+TGG | 0.428197 | tig0032188:+2323 | Msa1448390:CDS |
| ACTTTGATAGGAGGAAACTA+TGG | 0.437840 | tig0032188:+4184 | Msa1448390:CDS |
| CAGTTTCATGTGTATGTTGC+TGG | 0.438814 | tig0032188:-2002 | None:intergenic |
| CAAGCATGGGTTGGTGAAGC+AGG | 0.449167 | tig0032188:+3960 | Msa1448390:CDS |
| CAAGCTTTAACAGCAGCATC+TGG | 0.449403 | tig0032188:-4967 | None:intergenic |
| GAATTGTGTGGAGCTGGAAC+TGG | 0.449638 | tig0032188:+3536 | Msa1448390:CDS |
| GAAATACACTATTCATGGTT+GGG | 0.449995 | tig0032188:+3223 | Msa1448390:CDS |
| AGAGTTCTGCTGTTGGACCT+TGG | 0.450053 | tig0032188:+3156 | Msa1448390:CDS |
| AAATTTACATAGCCAAACTA+TGG | 0.453369 | tig0032188:+4822 | Msa1448390:CDS |
| GGCAAAATTTAAGGCCACTC+TGG | 0.454518 | tig0032188:-4731 | None:intergenic |
| TTGCAGCTAGCTTAGCTCAA+TGG | 0.455259 | tig0032188:+4987 | Msa1448390:exon |
| ACCCACCACATTTATAACCT+TGG | 0.456246 | tig0032188:+3734 | Msa1448390:CDS |
| CTTACATACAGGAGGTGATC+CGG | 0.457971 | tig0032188:+3839 | Msa1448390:intron |
| AAGGTCCAACAGCAGAACTC+TGG | 0.458755 | tig0032188:-3154 | None:intergenic |
| TGCACCTGGAGGCTTCTTTG+AGG | 0.459194 | tig0032188:+3658 | Msa1448390:CDS |
| CACTAGGCTAAACCGAAAAT+CGG | 0.461119 | tig0032188:+5010 | Msa1448390:three_prime_UTR |
| AGCTCATCCCATCTTTGCAT+TGG | 0.461356 | tig0032188:-2905 | None:intergenic |
| AATGAACTGAATAGTGCATT+GGG | 0.465084 | tig0032188:-5143 | None:intergenic |
| GTTAAGTTTGGTTTCACTCA+AGG | 0.468571 | tig0032188:+2875 | Msa1448390:CDS |
| TTGTTTGTGCAACTATTGAT+TGG | 0.469018 | tig0032188:+2378 | Msa1448390:CDS |
| GAAATGATTCAGCTGTGAAA+GGG | 0.471866 | tig0032188:+2306 | Msa1448390:CDS |
| GGTGCTTACCAATGCAAAGA+TGG | 0.475234 | tig0032188:+2897 | Msa1448390:CDS |
| GAATCCCAGAGTTCTGCTGT+TGG | 0.478372 | tig0032188:+3149 | Msa1448390:CDS |
| TCACCCTTGAAAATTAGATT+GGG | 0.483289 | tig0032188:+2773 | Msa1448390:CDS |
| TACTGCAGACAGACTTTGAT+AGG | 0.485428 | tig0032188:+4172 | Msa1448390:CDS |
| TTCAAAACAAATGGAGTACA+AGG | 0.488925 | tig0032188:-2845 | None:intergenic |
| TAATGAACTGAATAGTGCAT+TGG | 0.488937 | tig0032188:-5144 | None:intergenic |
| TGACTGGGGAAGATGCAGTT+GGG | 0.489900 | tig0032188:+2418 | Msa1448390:CDS |
| AACCGAAAATCGGTTTCCCT+TGG | 0.491824 | tig0032188:+5020 | Msa1448390:three_prime_UTR |
| AGAAATACACTATTCATGGT+TGG | 0.494288 | tig0032188:+3222 | Msa1448390:CDS |
| CTTCTTTGGCACCGACTCAT+GGG | 0.495122 | tig0032188:+4474 | Msa1448390:CDS |
| CCCTTGAAAATTAGATTGGG+TGG | 0.504477 | tig0032188:+2776 | Msa1448390:CDS |
| GACATTCAGTTTCTTGCCTT+AGG | 0.513469 | tig0032188:+5200 | Msa1448390:three_prime_UTR |
| AGAATTCTTTCAACTAAGCC+CGG | 0.517400 | tig0032188:-3858 | None:intergenic |
| TGAGCAAATACAATAGAAAG+AGG | 0.518407 | tig0032188:-4940 | None:intergenic |
| CCCCAGTCACATTTCTGAGG+TGG | 0.522444 | tig0032188:-2404 | None:intergenic |
| TTACATACAGGAGGTGATCC+GGG | 0.524148 | tig0032188:+3840 | Msa1448390:intron |
| CACATTTATAACCTTGGACC+AGG | 0.527860 | tig0032188:+3740 | Msa1448390:CDS |
| CAAGAACCTCAGCTCAAGCA+TGG | 0.529412 | tig0032188:+3946 | Msa1448390:CDS |
| GGTAATGAATTGTGTGGAGC+TGG | 0.529444 | tig0032188:+3530 | Msa1448390:intron |
| TCTCCCACATTATGAGTGGA+TGG | 0.529610 | tig0032188:-4760 | None:intergenic |
| ATATGTGACTTTATCTTGCA+AGG | 0.529864 | tig0032188:-2801 | None:intergenic |
| TTACTCTGCTGTAGTAGCAG+AGG | 0.530971 | tig0032188:-2101 | None:intergenic |
| TACAGGTATTTGGATCAGCT+TGG | 0.531719 | tig0032188:+4121 | Msa1448390:intron |
| TTTGTGCAACTATTGATTGG+TGG | 0.534149 | tig0032188:+2381 | Msa1448390:CDS |
| GGAAATGATTCAGCTGTGAA+AGG | 0.534369 | tig0032188:+2305 | Msa1448390:CDS |
| TTAAGTTTGGTTTCACTCAA+GGG | 0.534562 | tig0032188:+2876 | Msa1448390:CDS |
| CTGTTGTTAGATTGTTTGGA+GGG | 0.536590 | tig0032188:+5086 | Msa1448390:three_prime_UTR |
| GCCACTCCATTAAGAGAGGA+TGG | 0.540608 | tig0032188:-3885 | None:intergenic |
| AGGTCCAACAGCAGAACTCT+GGG | 0.540823 | tig0032188:-3153 | None:intergenic |
| GCATGGGTTGGTGAAGCAGG+AGG | 0.541025 | tig0032188:+3963 | Msa1448390:CDS |
| CATGGGTTGGTGAAGCAGGA+GGG | 0.543776 | tig0032188:+3964 | Msa1448390:CDS |
| TTCCATAGAAGGTAGCTGAC+AGG | 0.546554 | tig0032188:-4506 | None:intergenic |
| CAAAACCAATCAAAATCCTA+GGG | 0.547371 | tig0032188:-5114 | None:intergenic |
| TGTTTGGAGGGCGAAGCCCT+AGG | 0.554563 | tig0032188:+5098 | Msa1448390:three_prime_UTR |
| TTCATTGGAGTGAATTGCAT+AGG | 0.557031 | tig0032188:+2278 | Msa1448390:CDS |
| AGAAAACGACTCACTACCTA+AGG | 0.557890 | tig0032188:-5216 | None:intergenic |
| GTTGGAACATACCTGGTCCA+AGG | 0.558530 | tig0032188:-3751 | None:intergenic |
| ATTCTAAGTGTAGATTCAGC+TGG | 0.564761 | tig0032188:+4859 | Msa1448390:CDS |
| GTGGTGGGTGACCACATTTG+TGG | 0.567042 | tig0032188:-3720 | None:intergenic |
| TGCAAGATAAAGTCACATAT+GGG | 0.568227 | tig0032188:+2804 | Msa1448390:CDS |
| TACCATTTAACAGCAAAGGA+TGG | 0.568356 | tig0032188:+4799 | Msa1448390:CDS |
| TAGCTTAGCTCAATGGCACT+AGG | 0.569559 | tig0032188:+4994 | Msa1448390:exon |
| GTGACTGGGGAAGATGCAGT+TGG | 0.570547 | tig0032188:+2417 | Msa1448390:CDS |
| ACCTCAGCTCAAGCATGGGT+TGG | 0.570704 | tig0032188:+3951 | Msa1448390:CDS |
| GAAACCATCCACTCATAATG+TGG | 0.570906 | tig0032188:+4756 | Msa1448390:CDS |
| CTTCCCCAGTCACATTTCTG+AGG | 0.574209 | tig0032188:-2407 | None:intergenic |
| TTTGCCTCAAAGAAGCCTCC+AGG | 0.578642 | tig0032188:-3662 | None:intergenic |
| GTGCTTACCAATGCAAAGAT+GGG | 0.579091 | tig0032188:+2898 | Msa1448390:CDS |
| TAGTTCAGGCTGTATATCGA+AGG | 0.579271 | tig0032188:+3612 | Msa1448390:CDS |
| ACCAACCCATGCTTGAGCTG+AGG | 0.583418 | tig0032188:-3952 | None:intergenic |
| ACTGTTGTTAGATTGTTTGG+AGG | 0.583547 | tig0032188:+5085 | Msa1448390:three_prime_UTR |
| AGAGTACCATTTAACAGCAA+AGG | 0.585879 | tig0032188:+4795 | Msa1448390:CDS |
| GCCACCTCAGAAATGTGACT+GGG | 0.585883 | tig0032188:+2403 | Msa1448390:CDS |
| GGCCACTCTGGCTTGAACAG+TGG | 0.589150 | tig0032188:-4719 | None:intergenic |
| ATGGGTTGGTGAAGCAGGAG+GGG | 0.589189 | tig0032188:+3965 | Msa1448390:CDS |
| TGATTCTCCCACATTATGAG+TGG | 0.591100 | tig0032188:-4764 | None:intergenic |
| GGCCACCTCAGAAATGTGAC+TGG | 0.592338 | tig0032188:+2402 | Msa1448390:CDS |
| TCCATCCTCTCTTAATGGAG+TGG | 0.595996 | tig0032188:+3884 | Msa1448390:CDS |
| AAGAACCTCAGCTCAAGCAT+GGG | 0.599111 | tig0032188:+3947 | Msa1448390:CDS |
| GTCCAAGGTTATAAATGTGG+TGG | 0.600899 | tig0032188:-3736 | None:intergenic |
| CTTTGGCACCGACTCATGGG+AGG | 0.606750 | tig0032188:+4477 | Msa1448390:CDS |
| CTGGTCCAAGGTTATAAATG+TGG | 0.608301 | tig0032188:-3739 | None:intergenic |
| AACTTATGCACATTGTGCAA+AGG | 0.615463 | tig0032188:+4542 | Msa1448390:CDS |
| AAACCATCCACTCATAATGT+GGG | 0.621064 | tig0032188:+4757 | Msa1448390:CDS |
| AAACCACTAATCATTGCACC+TGG | 0.631010 | tig0032188:+3644 | Msa1448390:CDS |
| GACTGGGGAAGATGCAGTTG+GGG | 0.631756 | tig0032188:+2419 | Msa1448390:CDS |
| GTCAGCCACTCCATTAAGAG+AGG | 0.631825 | tig0032188:-3889 | None:intergenic |
| AAATGATTCAGCTGTGAAAG+GGG | 0.633658 | tig0032188:+2307 | Msa1448390:CDS |
| TGGATTTGGCATGAAAGTAG+TGG | 0.636768 | tig0032188:-4218 | None:intergenic |
| AGTTCAGGCTGTATATCGAA+GGG | 0.638931 | tig0032188:+3613 | Msa1448390:CDS |
| TCGGCATTAGTGTAGTTCCA+AGG | 0.645458 | tig0032188:-3173 | None:intergenic |
| ATCGGACGAATCCACAAATG+TGG | 0.653324 | tig0032188:+3709 | Msa1448390:CDS |
| TGCAGACAGACTTTGATAGG+AGG | 0.655417 | tig0032188:+4175 | Msa1448390:CDS |
| CACCACTGTTCAAGCCAGAG+TGG | 0.656315 | tig0032188:+4717 | Msa1448390:CDS |
| AGTATAACGTATAAAAGACT+CGG | 0.661223 | tig0032188:-3192 | None:intergenic |
| GGAAGTTGTTACAAGTACAA+TGG | 0.661737 | tig0032188:-2044 | None:intergenic |
| TGGACAGGTAATGAATTGTG+TGG | 0.666362 | tig0032188:+3524 | Msa1448390:intron |
| GGACACGTCCTCCCATGAGT+CGG | 0.680945 | tig0032188:-4485 | None:intergenic |
| CCACTAATCATTGCACCTGG+AGG | 0.683993 | tig0032188:+3647 | Msa1448390:CDS |
| TCCAAGGTTATAAATGTGGT+GGG | 0.685319 | tig0032188:-3735 | None:intergenic |
| ACATATATAGGATTCAGTGA+AGG | 0.688369 | tig0032188:-4889 | None:intergenic |
| CCACCTCAGAAATGTGACTG+GGG | 0.716848 | tig0032188:+2404 | Msa1448390:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATGTTTCATTTA+TGG | + | tig0032188:2503-2522 | Msa1448390:intron | 10.0% |
| !! | TTATTATGAAAATAAATAAC+AGG | - | tig0032188:2681-2700 | None:intergenic | 10.0% |
| !!! | ATTTTGTTAAATGCAATAAA+AGG | + | tig0032188:2637-2656 | Msa1448390:CDS | 15.0% |
| !!! | TATATATTTGCAGTTATTTT+TGG | + | tig0032188:3463-3482 | Msa1448390:intron | 15.0% |
| !! | CAATTAATATTCAACTAATT+CGG | + | tig0032188:4299-4318 | Msa1448390:intron | 15.0% |
| !! | ATTTATGAATTTACTTCAAA+CGG | - | tig0032188:4399-4418 | None:intergenic | 15.0% |
| !!! | CTTTATGGTTTTTCATAAAT+GGG | - | tig0032188:2167-2186 | None:intergenic | 20.0% |
| !!! | TCTTTATGGTTTTTCATAAA+TGG | - | tig0032188:2168-2187 | None:intergenic | 20.0% |
| !! | AATCAAAGTTAAGATCTTTA+TGG | - | tig0032188:2182-2201 | None:intergenic | 20.0% |
| !!! | TCTTAACTTTGATTGATTTT+AGG | + | tig0032188:2188-2207 | Msa1448390:five_prime_UTR | 20.0% |
| !!! | TTTGATTGATTTTAGGAAAT+GGG | + | tig0032188:2195-2214 | Msa1448390:five_prime_UTR | 20.0% |
| !!! | TTAACAAAATTTTGTTGTTG+AGG | - | tig0032188:2627-2646 | None:intergenic | 20.0% |
| !!! | ACATTTTCTTTCAAAACAAA+TGG | - | tig0032188:2857-2876 | None:intergenic | 20.0% |
| !! | TTGAAAGAAAATGTTAAGTT+TGG | + | tig0032188:2863-2882 | Msa1448390:CDS | 20.0% |
| !!! | TGTTTTTTGATAACTCTAAA+GGG | - | tig0032188:2973-2992 | None:intergenic | 20.0% |
| !!! | TTGTTTTTTGATAACTCTAA+AGG | - | tig0032188:2974-2993 | None:intergenic | 20.0% |
| !! | CCAAATTATAAAAGTTGAAT+CGG | - | tig0032188:3035-3054 | None:intergenic | 20.0% |
| !!! | TATATTGACATTTTTAACGA+AGG | - | tig0032188:3269-3288 | None:intergenic | 20.0% |
| !! | CGTTAAAAATGTCAATATAT+TGG | + | tig0032188:3270-3289 | Msa1448390:intron | 20.0% |
| !! | TTAGACTGAAAATCAAAAAA+TGG | + | tig0032188:3298-3317 | Msa1448390:intron | 20.0% |
| !!! | AAATTTAATTTGTTGACCAA+TGG | - | tig0032188:3398-3417 | None:intergenic | 20.0% |
| !!! | TTTTTGGTTAAAAGGAAAAT+AGG | + | tig0032188:3479-3498 | Msa1448390:intron | 20.0% |
| !! | TAAGGAATTCTTAAACAAAT+CGG | + | tig0032188:3691-3710 | Msa1448390:CDS | 20.0% |
| !! | TAATCAAATTCGTGAAAATT+GGG | - | tig0032188:3806-3825 | None:intergenic | 20.0% |
| !! | ATAATCAAATTCGTGAAAAT+TGG | - | tig0032188:3807-3826 | None:intergenic | 20.0% |
| !!! | AACTTTGAAGTACATTTTTA+AGG | - | tig0032188:3926-3945 | None:intergenic | 20.0% |
| !!! | TTTTAGTACCTATAATAATC+TGG | - | tig0032188:4241-4260 | None:intergenic | 20.0% |
| !! | TTTATGAATTTACTTCAAAC+GGG | - | tig0032188:4398-4417 | None:intergenic | 20.0% |
| !! | TTTGAAGAATCAACATATAT+AGG | - | tig0032188:4904-4923 | None:intergenic | 20.0% |
| ! | ATGACAAAAACTTTGTAACA+AGG | - | tig0032188:2068-2087 | None:intergenic | 25.0% |
| ! | AACTATAAAAAAAACAGTCG+AGG | - | tig0032188:2132-2151 | None:intergenic | 25.0% |
| !!! | CGACTGTTTTTTTTATAGTT+TGG | + | tig0032188:2132-2151 | Msa1448390:five_prime_UTR | 25.0% |
| !!! | CTTTGATTGATTTTAGGAAA+TGG | + | tig0032188:2194-2213 | Msa1448390:five_prime_UTR | 25.0% |
| !!! | TATGTTTTTTTGGATGTACT+TGG | + | tig0032188:2238-2257 | Msa1448390:exon | 25.0% |
| ! | TGTAAATTATCTCTTTCACT+AGG | - | tig0032188:2578-2597 | None:intergenic | 25.0% |
| !!! | TTATGATTTTAATCTCATGC+AGG | + | tig0032188:2600-2619 | Msa1448390:intron | 25.0% |
| !! | CCGATTCAACTTTTATAATT+TGG | + | tig0032188:3032-3051 | Msa1448390:intron | 25.0% |
| ! | TGAAGTTTACCATTAATCAA+TGG | + | tig0032188:3066-3085 | Msa1448390:intron | 25.0% |
| !! | ATATACCTACCATTGATTAA+TGG | - | tig0032188:3078-3097 | None:intergenic | 25.0% |
| ! | TTCAGGGTTAATGTTATATT+TGG | + | tig0032188:3098-3117 | Msa1448390:intron | 25.0% |
| ! | AGTATAACGTATAAAAGACT+CGG | - | tig0032188:3195-3214 | None:intergenic | 25.0% |
| !! | TTGAAATTGATAATAGCCAT+TGG | + | tig0032188:3379-3398 | Msa1448390:intron | 25.0% |
| !!! | TGCAGTTATTTTTGGTTAAA+AGG | + | tig0032188:3471-3490 | Msa1448390:intron | 25.0% |
| ! | AAAGGAAAATAGGAATTACA+AGG | + | tig0032188:3489-3508 | Msa1448390:intron | 25.0% |
| !!! | TTACAAGGAGCTTTTTTTAT+TGG | + | tig0032188:3504-3523 | Msa1448390:intron | 25.0% |
| !!! | TGTTTTAAGAAAGATAGTTC+AGG | + | tig0032188:3598-3617 | Msa1448390:CDS | 25.0% |
| !!! | AAATTCTTATGCTGTTTTGT+TGG | - | tig0032188:3772-3791 | None:intergenic | 25.0% |
| ! | TACCTATAATAATCTGGATT+TGG | - | tig0032188:4235-4254 | None:intergenic | 25.0% |
| !!! | AAAGGTCCTATTTTGAATTT+AGG | + | tig0032188:4370-4389 | Msa1448390:intron | 25.0% |
| !!! | AAGGTCCTATTTTGAATTTA+GGG | + | tig0032188:4371-4390 | Msa1448390:intron | 25.0% |
| !!! | TGCTATTTTGTGACATTAAT+AGG | + | tig0032188:4424-4443 | Msa1448390:intron | 25.0% |
| !!! | GCTATTTTGTGACATTAATA+GGG | + | tig0032188:4425-4444 | Msa1448390:intron | 25.0% |
| ! | AAATTTACATAGCCAAACTA+TGG | + | tig0032188:4822-4841 | Msa1448390:CDS | 25.0% |
| !! | ATTTTCTTATCAATCACCAA+GGG | - | tig0032188:5039-5058 | None:intergenic | 25.0% |
| !! | AATTTTCTTATCAATCACCA+AGG | - | tig0032188:5040-5059 | None:intergenic | 25.0% |
| ! | ATTCATGGCAAAGCTTTTAT+TGG | + | tig0032188:2338-2357 | Msa1448390:CDS | 30.0% |
| TTGTTTGTGCAACTATTGAT+TGG | + | tig0032188:2378-2397 | Msa1448390:CDS | 30.0% | |
| !! | TCTAATTTTCAAGGGTGAAA+AGG | - | tig0032188:2771-2790 | None:intergenic | 30.0% |
| TTCACCCTTGAAAATTAGAT+TGG | + | tig0032188:2772-2791 | Msa1448390:CDS | 30.0% | |
| TCACCCTTGAAAATTAGATT+GGG | + | tig0032188:2773-2792 | Msa1448390:CDS | 30.0% | |
| ATATGTGACTTTATCTTGCA+AGG | - | tig0032188:2804-2823 | None:intergenic | 30.0% | |
| TTGCAAGATAAAGTCACATA+TGG | + | tig0032188:2803-2822 | Msa1448390:CDS | 30.0% | |
| TGCAAGATAAAGTCACATAT+GGG | + | tig0032188:2804-2823 | Msa1448390:CDS | 30.0% | |
| TTCAAAACAAATGGAGTACA+AGG | - | tig0032188:2848-2867 | None:intergenic | 30.0% | |
| ! | TTAAGTTTGGTTTCACTCAA+GGG | + | tig0032188:2876-2895 | Msa1448390:CDS | 30.0% |
| GTTTACCATTAATCAATGGT+AGG | + | tig0032188:3070-3089 | Msa1448390:intron | 30.0% | |
| ATCAATGGTAGGTATATTTC+AGG | + | tig0032188:3081-3100 | Msa1448390:intron | 30.0% | |
| TCAATGGTAGGTATATTTCA+GGG | + | tig0032188:3082-3101 | Msa1448390:intron | 30.0% | |
| GCAAAGAAATACACTATTCA+TGG | + | tig0032188:3218-3237 | Msa1448390:CDS | 30.0% | |
| AGAAATACACTATTCATGGT+TGG | + | tig0032188:3222-3241 | Msa1448390:CDS | 30.0% | |
| GAAATACACTATTCATGGTT+GGG | + | tig0032188:3223-3242 | Msa1448390:CDS | 30.0% | |
| ! | ATCAATTTCAAGTGAACTCA+TGG | - | tig0032188:3370-3389 | None:intergenic | 30.0% |
| ACTGATATTCCGAAAAATCA+CGG | - | tig0032188:4057-4076 | None:intergenic | 30.0% | |
| ! | TGATTATCAGATAAAGCGTT+AGG | - | tig0032188:4094-4113 | None:intergenic | 30.0% |
| CTGATAATCACATCAAATAC+AGG | + | tig0032188:4104-4123 | Msa1448390:intron | 30.0% | |
| TCACATCAAATACAGGTATT+TGG | + | tig0032188:4111-4130 | Msa1448390:intron | 30.0% | |
| TGCCAAATCCAGATTATTAT+AGG | + | tig0032188:4230-4249 | Msa1448390:CDS | 30.0% | |
| ! | CACAATACTGTTTCTCAATT+TGG | + | tig0032188:4687-4706 | Msa1448390:CDS | 30.0% |
| TGGTTTCTTGGCAAAATTTA+AGG | - | tig0032188:4743-4762 | None:intergenic | 30.0% | |
| TTCCATTTAGTACCATAGTT+TGG | - | tig0032188:4837-4856 | None:intergenic | 30.0% | |
| ACATATATAGGATTCAGTGA+AGG | - | tig0032188:4892-4911 | None:intergenic | 30.0% | |
| TGAGCAAATACAATAGAAAG+AGG | - | tig0032188:4943-4962 | None:intergenic | 30.0% | |
| AGTACTGTTGTTAGATTGTT+TGG | + | tig0032188:5082-5101 | Msa1448390:three_prime_UTR | 30.0% | |
| CAAAACCAATCAAAATCCTA+GGG | - | tig0032188:5117-5136 | None:intergenic | 30.0% | |
| AATGAACTGAATAGTGCATT+GGG | - | tig0032188:5146-5165 | None:intergenic | 30.0% | |
| TAATGAACTGAATAGTGCAT+TGG | - | tig0032188:5147-5166 | None:intergenic | 30.0% | |
| GGAAGTTGTTACAAGTACAA+TGG | - | tig0032188:2047-2066 | None:intergenic | 35.0% | |
| TGGGTTATCAAAAAAGCTTC+TGG | + | tig0032188:2214-2233 | Msa1448390:five_prime_UTR | 35.0% | |
| GGGTTATCAAAAAAGCTTCT+GGG | + | tig0032188:2215-2234 | Msa1448390:five_prime_UTR | 35.0% | |
| !!! | AGCTTCTGGGTATGTTTTTT+TGG | + | tig0032188:2228-2247 | Msa1448390:exon | 35.0% |
| TTCATTGGAGTGAATTGCAT+AGG | + | tig0032188:2278-2297 | Msa1448390:CDS | 35.0% | |
| GAAATGATTCAGCTGTGAAA+GGG | + | tig0032188:2306-2325 | Msa1448390:CDS | 35.0% | |
| AAATGATTCAGCTGTGAAAG+GGG | + | tig0032188:2307-2326 | Msa1448390:CDS | 35.0% | |
| ! | ATGGCAAAGCTTTTATTGGA+AGG | + | tig0032188:2342-2361 | Msa1448390:CDS | 35.0% |
| ! | TTTGTGCAACTATTGATTGG+TGG | + | tig0032188:2381-2400 | Msa1448390:CDS | 35.0% |
| TCATGCTTCTCTTCTTAATC+TGG | + | tig0032188:2442-2461 | Msa1448390:CDS | 35.0% | |
| AAAGGCTGCAAAACATTCAA+AGG | - | tig0032188:2753-2772 | None:intergenic | 35.0% | |
| ! | CCACCCAATCTAATTTTCAA+GGG | - | tig0032188:2779-2798 | None:intergenic | 35.0% |
| ! | ACCACCCAATCTAATTTTCA+AGG | - | tig0032188:2780-2799 | None:intergenic | 35.0% |
| ! | GTTAAGTTTGGTTTCACTCA+AGG | + | tig0032188:2875-2894 | Msa1448390:CDS | 35.0% |
| !! | AACAGCTTTTTCCAAAAAGC+AGG | + | tig0032188:2929-2948 | Msa1448390:CDS | 35.0% |
| !! | ACAGCTTTTTCCAAAAAGCA+GGG | + | tig0032188:2930-2949 | Msa1448390:CDS | 35.0% |
| !! | TGATTCTTTACCCTGCTTTT+TGG | - | tig0032188:2943-2962 | None:intergenic | 35.0% |
| ! | TGTGTTTCTATGCGTGAATT+AGG | + | tig0032188:3003-3022 | Msa1448390:intron | 35.0% |
| TTTGGATTAAATGCTCTTGC+TGG | + | tig0032188:3116-3135 | Msa1448390:CDS | 35.0% | |
| ACTATTCATGGTTGGGAATT+CGG | + | tig0032188:3230-3249 | Msa1448390:CDS | 35.0% | |
| !!! | AGGAGCTTTTTTTATTGGAC+AGG | + | tig0032188:3509-3528 | Msa1448390:intron | 35.0% |
| !! | CTTTGAGGCAAATTGGTTTA+AGG | + | tig0032188:3673-3692 | Msa1448390:CDS | 35.0% |
| TCCAAGGTTATAAATGTGGT+GGG | - | tig0032188:3738-3757 | None:intergenic | 35.0% | |
| ACAGAAAGCTACTTACATAC+AGG | + | tig0032188:3828-3847 | Msa1448390:intron | 35.0% | |
| AGAATTCTTTCAACTAAGCC+CGG | - | tig0032188:3861-3880 | None:intergenic | 35.0% | |
| ! | ATGCATTTGTCAACAGCTTT+TGG | + | tig0032188:4018-4037 | Msa1448390:CDS | 35.0% |
| ! | TGTAACGAACCGTGATTTTT+CGG | + | tig0032188:4045-4064 | Msa1448390:intron | 35.0% |
| TCGGAATATCAGTATTCAGT+AGG | + | tig0032188:4064-4083 | Msa1448390:intron | 35.0% | |
| ACTTTGATAGGAGGAAACTA+TGG | + | tig0032188:4184-4203 | Msa1448390:CDS | 35.0% | |
| TTTCTTACAGTGCTCTTCTT+TGG | + | tig0032188:4460-4479 | Msa1448390:intron | 35.0% | |
| GATCTTCTTTGTTCCATAGA+AGG | - | tig0032188:4520-4539 | None:intergenic | 35.0% | |
| AACTTATGCACATTGTGCAA+AGG | + | tig0032188:4542-4561 | Msa1448390:CDS | 35.0% | |
| TGATGATACTATCTTGCAGA+AGG | + | tig0032188:4660-4679 | Msa1448390:intron | 35.0% | |
| GATGATACTATCTTGCAGAA+GGG | + | tig0032188:4661-4680 | Msa1448390:intron | 35.0% | |
| ATTATGAGTGGATGGTTTCT+TGG | - | tig0032188:4755-4774 | None:intergenic | 35.0% | |
| AAACCATCCACTCATAATGT+GGG | + | tig0032188:4757-4776 | Msa1448390:CDS | 35.0% | |
| ! | AGAGTACCATTTAACAGCAA+AGG | + | tig0032188:4795-4814 | Msa1448390:CDS | 35.0% |
| TACCATTTAACAGCAAAGGA+TGG | + | tig0032188:4799-4818 | Msa1448390:CDS | 35.0% | |
| !! | TTCCATCCTTTGCTGTTAAA+TGG | - | tig0032188:4804-4823 | None:intergenic | 35.0% |
| AGCCAAACTATGGTACTAAA+TGG | + | tig0032188:4832-4851 | Msa1448390:CDS | 35.0% | |
| ATTCTAAGTGTAGATTCAGC+TGG | + | tig0032188:4859-4878 | Msa1448390:CDS | 35.0% | |
| CTTCAAAGCCAATAACAGTT+AGG | + | tig0032188:4917-4936 | Msa1448390:CDS | 35.0% | |
| ACTGTTGTTAGATTGTTTGG+AGG | + | tig0032188:5085-5104 | Msa1448390:three_prime_UTR | 35.0% | |
| CTGTTGTTAGATTGTTTGGA+GGG | + | tig0032188:5086-5105 | Msa1448390:three_prime_UTR | 35.0% | |
| GCAAAACCAATCAAAATCCT+AGG | - | tig0032188:5118-5137 | None:intergenic | 35.0% | |
| CAGTTTCATGTGTATGTTGC+TGG | - | tig0032188:2005-2024 | None:intergenic | 40.0% | |
| AGCTTCAGTTTCAGCTTCAT+TGG | + | tig0032188:2263-2282 | Msa1448390:CDS | 40.0% | |
| GGAGTGAATTGCATAGGATT+AGG | + | tig0032188:2284-2303 | Msa1448390:CDS | 40.0% | |
| GGAAATGATTCAGCTGTGAA+AGG | + | tig0032188:2305-2324 | Msa1448390:CDS | 40.0% | |
| AAAGGGGTTGTTGTCATTCA+TGG | + | tig0032188:2323-2342 | Msa1448390:CDS | 40.0% | |
| CCCTTGAAAATTAGATTGGG+TGG | + | tig0032188:2776-2795 | Msa1448390:CDS | 40.0% | |
| GTGCTTACCAATGCAAAGAT+GGG | + | tig0032188:2898-2917 | Msa1448390:CDS | 40.0% | |
| TGGACAGGTAATGAATTGTG+TGG | + | tig0032188:3524-3543 | Msa1448390:intron | 40.0% | |
| TAGTTCAGGCTGTATATCGA+AGG | + | tig0032188:3612-3631 | Msa1448390:CDS | 40.0% | |
| AGTTCAGGCTGTATATCGAA+GGG | + | tig0032188:3613-3632 | Msa1448390:CDS | 40.0% | |
| ! | GGTGCAATGATTAGTGGTTT+TGG | - | tig0032188:3644-3663 | None:intergenic | 40.0% |
| AAACCACTAATCATTGCACC+TGG | + | tig0032188:3644-3663 | Msa1448390:CDS | 40.0% | |
| ACCCACCACATTTATAACCT+TGG | + | tig0032188:3734-3753 | Msa1448390:CDS | 40.0% | |
| GTCCAAGGTTATAAATGTGG+TGG | - | tig0032188:3739-3758 | None:intergenic | 40.0% | |
| CTGGTCCAAGGTTATAAATG+TGG | - | tig0032188:3742-3761 | None:intergenic | 40.0% | |
| CACATTTATAACCTTGGACC+AGG | + | tig0032188:3740-3759 | Msa1448390:CDS | 40.0% | |
| !! | CTGTTTTGTTGGAACATACC+TGG | - | tig0032188:3761-3780 | None:intergenic | 40.0% |
| GAAAGCTACTTACATACAGG+AGG | + | tig0032188:3831-3850 | Msa1448390:intron | 40.0% | |
| CTCAATCCATCCTCTCTTAA+TGG | + | tig0032188:3879-3898 | Msa1448390:CDS | 40.0% | |
| TACAGGTATTTGGATCAGCT+TGG | + | tig0032188:4121-4140 | Msa1448390:intron | 40.0% | |
| TACTGCAGACAGACTTTGAT+AGG | + | tig0032188:4172-4191 | Msa1448390:CDS | 40.0% | |
| TGGATTTGGCATGAAAGTAG+TGG | - | tig0032188:4221-4240 | None:intergenic | 40.0% | |
| AGCATCACAGACACTAATGA+AGG | - | tig0032188:4326-4345 | None:intergenic | 40.0% | |
| ! | ATTGCCTGCAACTTTGAGAA+AGG | + | tig0032188:4352-4371 | Msa1448390:intron | 40.0% |
| CGGGACCCTAAATTCAAAAT+AGG | - | tig0032188:4379-4398 | None:intergenic | 40.0% | |
| GAAACCATCCACTCATAATG+TGG | + | tig0032188:4756-4775 | Msa1448390:CDS | 40.0% | |
| TGATTCTCCCACATTATGAG+TGG | - | tig0032188:4767-4786 | None:intergenic | 40.0% | |
| GAAAGAGGCCTAACTGTTAT+TGG | - | tig0032188:4928-4947 | None:intergenic | 40.0% | |
| CACTAGGCTAAACCGAAAAT+CGG | + | tig0032188:5010-5029 | Msa1448390:three_prime_UTR | 40.0% | |
| GACATTCAGTTTCTTGCCTT+AGG | + | tig0032188:5200-5219 | Msa1448390:three_prime_UTR | 40.0% | |
| AGAAAACGACTCACTACCTA+AGG | - | tig0032188:5219-5238 | None:intergenic | 40.0% | |
| ! | ACTGTACTGTCTTTTGCAGC+AGG | + | tig0032188:2021-2040 | Msa1448390:five_prime_UTR | 45.0% |
| TTACTCTGCTGTAGTAGCAG+AGG | - | tig0032188:2104-2123 | None:intergenic | 45.0% | |
| GGTGCTTACCAATGCAAAGA+TGG | + | tig0032188:2897-2916 | Msa1448390:CDS | 45.0% | |
| AGCTCATCCCATCTTTGCAT+TGG | - | tig0032188:2908-2927 | None:intergenic | 45.0% | |
| TCGGCATTAGTGTAGTTCCA+AGG | - | tig0032188:3176-3195 | None:intergenic | 45.0% | |
| ! | AGTGAACTCATGGCTTGTGA+CGG | - | tig0032188:3360-3379 | None:intergenic | 45.0% |
| GGTAATGAATTGTGTGGAGC+TGG | + | tig0032188:3530-3549 | Msa1448390:intron | 45.0% | |
| !! | GAGGCTTCTTTGAGGCAAAT+TGG | + | tig0032188:3666-3685 | Msa1448390:CDS | 45.0% |
| ATCGGACGAATCCACAAATG+TGG | + | tig0032188:3709-3728 | Msa1448390:CDS | 45.0% | |
| CTTACATACAGGAGGTGATC+CGG | + | tig0032188:3839-3858 | Msa1448390:intron | 45.0% | |
| TTACATACAGGAGGTGATCC+GGG | + | tig0032188:3840-3859 | Msa1448390:intron | 45.0% | |
| TCCATCCTCTCTTAATGGAG+TGG | + | tig0032188:3884-3903 | Msa1448390:CDS | 45.0% | |
| AAGAACCTCAGCTCAAGCAT+GGG | + | tig0032188:3947-3966 | Msa1448390:CDS | 45.0% | |
| CTTGGCATGTCAGCTACTTA+TGG | + | tig0032188:4139-4158 | Msa1448390:CDS | 45.0% | |
| TGCAGACAGACTTTGATAGG+AGG | + | tig0032188:4175-4194 | Msa1448390:CDS | 45.0% | |
| AGGACCTTTCTCAAAGTTGC+AGG | - | tig0032188:4359-4378 | None:intergenic | 45.0% | |
| TTCCATAGAAGGTAGCTGAC+AGG | - | tig0032188:4509-4528 | None:intergenic | 45.0% | |
| ! | GGCAAAATTTAAGGCCACTC+TGG | - | tig0032188:4734-4753 | None:intergenic | 45.0% |
| TCTCCCACATTATGAGTGGA+TGG | - | tig0032188:4763-4782 | None:intergenic | 45.0% | |
| ! | CAAGCTTTAACAGCAGCATC+TGG | - | tig0032188:4970-4989 | None:intergenic | 45.0% |
| ! | TTGCAGCTAGCTTAGCTCAA+TGG | + | tig0032188:4987-5006 | Msa1448390:exon | 45.0% |
| TAGCTTAGCTCAATGGCACT+AGG | + | tig0032188:4994-5013 | Msa1448390:exon | 45.0% | |
| ! | AACCGAAAATCGGTTTCCCT+TGG | + | tig0032188:5020-5039 | Msa1448390:three_prime_UTR | 45.0% |
| !! | CACCAAGGGAAACCGATTTT+CGG | - | tig0032188:5025-5044 | None:intergenic | 45.0% |
| !! | CGAAGCCCTAGGATTTTGAT+TGG | + | tig0032188:5109-5128 | Msa1448390:three_prime_UTR | 45.0% |
| GCCACCTCAGAAATGTGACT+GGG | + | tig0032188:2403-2422 | Msa1448390:CDS | 50.0% | |
| CCACCTCAGAAATGTGACTG+GGG | + | tig0032188:2404-2423 | Msa1448390:CDS | 50.0% | |
| CTTCCCCAGTCACATTTCTG+AGG | - | tig0032188:2410-2429 | None:intergenic | 50.0% | |
| TGACTGGGGAAGATGCAGTT+GGG | + | tig0032188:2418-2437 | Msa1448390:CDS | 50.0% | |
| GAATCCCAGAGTTCTGCTGT+TGG | + | tig0032188:3149-3168 | Msa1448390:CDS | 50.0% | |
| AGGTCCAACAGCAGAACTCT+GGG | - | tig0032188:3156-3175 | None:intergenic | 50.0% | |
| AAGGTCCAACAGCAGAACTC+TGG | - | tig0032188:3157-3176 | None:intergenic | 50.0% | |
| AGAGTTCTGCTGTTGGACCT+TGG | + | tig0032188:3156-3175 | Msa1448390:CDS | 50.0% | |
| GAATTGTGTGGAGCTGGAAC+TGG | + | tig0032188:3536-3555 | Msa1448390:CDS | 50.0% | |
| CCTCCAGGTGCAATGATTAG+TGG | - | tig0032188:3650-3669 | None:intergenic | 50.0% | |
| CCACTAATCATTGCACCTGG+AGG | + | tig0032188:3647-3666 | Msa1448390:CDS | 50.0% | |
| TTTGCCTCAAAGAAGCCTCC+AGG | - | tig0032188:3665-3684 | None:intergenic | 50.0% | |
| GTTGGAACATACCTGGTCCA+AGG | - | tig0032188:3754-3773 | None:intergenic | 50.0% | |
| GCCACTCCATTAAGAGAGGA+TGG | - | tig0032188:3888-3907 | None:intergenic | 50.0% | |
| GTCAGCCACTCCATTAAGAG+AGG | - | tig0032188:3892-3911 | None:intergenic | 50.0% | |
| CAAGAACCTCAGCTCAAGCA+TGG | + | tig0032188:3946-3965 | Msa1448390:CDS | 50.0% | |
| ! | TTGGGGTAGTGGTCATCATC+TGG | + | tig0032188:3989-4008 | Msa1448390:CDS | 50.0% |
| !! | TCTTCTTTGGCACCGACTCA+TGG | + | tig0032188:4473-4492 | Msa1448390:CDS | 50.0% |
| !! | CTTCTTTGGCACCGACTCAT+GGG | + | tig0032188:4474-4493 | Msa1448390:CDS | 50.0% |
| GTCCTGTCAGCTACCTTCTA+TGG | + | tig0032188:4504-4523 | Msa1448390:CDS | 50.0% | |
| GGCCACCTCAGAAATGTGAC+TGG | + | tig0032188:2402-2421 | Msa1448390:CDS | 55.0% | |
| ! | CCCCAGTCACATTTCTGAGG+TGG | - | tig0032188:2407-2426 | None:intergenic | 55.0% |
| GTGACTGGGGAAGATGCAGT+TGG | + | tig0032188:2417-2436 | Msa1448390:CDS | 55.0% | |
| GACTGGGGAAGATGCAGTTG+GGG | + | tig0032188:2419-2438 | Msa1448390:CDS | 55.0% | |
| TGCACCTGGAGGCTTCTTTG+AGG | + | tig0032188:3658-3677 | Msa1448390:CDS | 55.0% | |
| !! | GTGGTGGGTGACCACATTTG+TGG | - | tig0032188:3723-3742 | None:intergenic | 55.0% |
| ACCTCAGCTCAAGCATGGGT+TGG | + | tig0032188:3951-3970 | Msa1448390:CDS | 55.0% | |
| ACCAACCCATGCTTGAGCTG+AGG | - | tig0032188:3955-3974 | None:intergenic | 55.0% | |
| !! | CAAGCATGGGTTGGTGAAGC+AGG | + | tig0032188:3960-3979 | Msa1448390:CDS | 55.0% |
| !! | CATGGGTTGGTGAAGCAGGA+GGG | + | tig0032188:3964-3983 | Msa1448390:CDS | 55.0% |
| !! | ATGGGTTGGTGAAGCAGGAG+GGG | + | tig0032188:3965-3984 | Msa1448390:CDS | 55.0% |
| CACCACTGTTCAAGCCAGAG+TGG | + | tig0032188:4717-4736 | Msa1448390:CDS | 55.0% | |
| !! | GCATGGGTTGGTGAAGCAGG+AGG | + | tig0032188:3963-3982 | Msa1448390:CDS | 60.0% |
| TTGGTGAAGCAGGAGGGGCT+TGG | + | tig0032188:3970-3989 | Msa1448390:CDS | 60.0% | |
| TGGTGAAGCAGGAGGGGCTT+GGG | + | tig0032188:3971-3990 | Msa1448390:CDS | 60.0% | |
| !! | CTTTGGCACCGACTCATGGG+AGG | + | tig0032188:4477-4496 | Msa1448390:CDS | 60.0% |
| GGACACGTCCTCCCATGAGT+CGG | - | tig0032188:4488-4507 | None:intergenic | 60.0% | |
| ! | GGCCACTCTGGCTTGAACAG+TGG | - | tig0032188:4722-4741 | None:intergenic | 60.0% |
| TGTTTGGAGGGCGAAGCCCT+AGG | + | tig0032188:5098-5117 | Msa1448390:three_prime_UTR | 60.0% | |
| GGTGAAGCAGGAGGGGCTTG+GGG | + | tig0032188:3972-3991 | Msa1448390:CDS | 65.0% | |
| GCAGGAGGGGCTTGGGGTAG+TGG | + | tig0032188:3978-3997 | Msa1448390:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032188 | gene | 1992 | 5272 | 1992 | ID=Msa1448390;Name=Msa1448390 |
| tig0032188 | mRNA | 1992 | 5272 | 1992 | ID=Msa1448390-mRNA-1;Parent=Msa1448390;Name=Msa1448390-mRNA-1;_AED=0.22;_eAED=0.22;_QI=247|1|1|1|1|1|9|276|519 |
| tig0032188 | exon | 1992 | 2463 | 1992 | ID=Msa1448390-mRNA-1:exon:16343;Parent=Msa1448390-mRNA-1 |
| tig0032188 | exon | 2622 | 2658 | 2622 | ID=Msa1448390-mRNA-1:exon:16344;Parent=Msa1448390-mRNA-1 |
| tig0032188 | exon | 2768 | 2951 | 2768 | ID=Msa1448390-mRNA-1:exon:16345;Parent=Msa1448390-mRNA-1 |
| tig0032188 | exon | 3103 | 3251 | 3103 | ID=Msa1448390-mRNA-1:exon:16346;Parent=Msa1448390-mRNA-1 |
| tig0032188 | exon | 3531 | 3761 | 3531 | ID=Msa1448390-mRNA-1:exon:16347;Parent=Msa1448390-mRNA-1 |
| tig0032188 | exon | 3850 | 4039 | 3850 | ID=Msa1448390-mRNA-1:exon:16348;Parent=Msa1448390-mRNA-1 |
| tig0032188 | exon | 4126 | 4251 | 4126 | ID=Msa1448390-mRNA-1:exon:16349;Parent=Msa1448390-mRNA-1 |
| tig0032188 | exon | 4470 | 4569 | 4470 | ID=Msa1448390-mRNA-1:exon:16350;Parent=Msa1448390-mRNA-1 |
| tig0032188 | exon | 4679 | 5272 | 4679 | ID=Msa1448390-mRNA-1:exon:16351;Parent=Msa1448390-mRNA-1 |
| tig0032188 | five_prime_UTR | 1992 | 2238 | 1992 | ID=Msa1448390-mRNA-1:five_prime_utr;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 2239 | 2463 | 2239 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 2622 | 2658 | 2622 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 2768 | 2951 | 2768 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 3103 | 3251 | 3103 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 3531 | 3761 | 3531 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 3850 | 4039 | 3850 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 4126 | 4251 | 4126 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 4470 | 4569 | 4470 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | CDS | 4679 | 4996 | 4679 | ID=Msa1448390-mRNA-1:cds;Parent=Msa1448390-mRNA-1 |
| tig0032188 | three_prime_UTR | 4997 | 5272 | 4997 | ID=Msa1448390-mRNA-1:three_prime_utr;Parent=Msa1448390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
