Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227830 | RHN38564.1 | 87.603 | 484 | 11 | 4 | 21 | 470 | 23 | 491 | 0.0 | 828 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227830 | sp|Q96K49|TM87B_HUMAN | 28.662 | 314 | 202 | 5 | 169 | 465 | 205 | 513 | 4.53e-32 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227830 | A0A396GFT5 | 87.603 | 484 | 11 | 4 | 21 | 470 | 23 | 491 | 0.0 | 828 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1227830 | Msa1396240 | 0.814209 | 1.730929e-51 | -8.615850e-47 |
| Msa0437620 | Msa1227830 | 0.808070 | 3.709410e-50 | -8.615850e-47 |
| Msa1021590 | Msa1227830 | 0.815287 | 9.986409e-52 | -8.615850e-47 |
| Msa1044680 | Msa1227830 | 0.815775 | 7.776331e-52 | -8.615850e-47 |
| Msa1105640 | Msa1227830 | 0.821499 | 3.909181e-53 | -8.615850e-47 |
| Msa1191500 | Msa1227830 | 0.822542 | 2.240403e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227830 | MtrunA17_Chr8g0334581 | 87.603 | 484 | 11 | 4 | 21 | 470 | 23 | 491 | 0.0 | 828 |
| Msa1227830 | MtrunA17_Chr5g0428321 | 56.445 | 512 | 151 | 14 | 24 | 470 | 37 | 541 | 0.0 | 530 |
| Msa1227830 | MtrunA17_Chr8g0344451 | 42.339 | 496 | 227 | 11 | 25 | 470 | 19 | 505 | 1.15e-117 | 354 |
| Msa1227830 | MtrunA17_Chr2g0278311 | 40.249 | 482 | 227 | 11 | 26 | 454 | 23 | 496 | 3.99e-113 | 343 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1227830 | AT1G61670.1 | 51.923 | 520 | 168 | 13 | 14 | 470 | 13 | 513 | 6.33e-162 | 468 |
| Msa1227830 | AT1G61670.2 | 51.923 | 520 | 168 | 13 | 14 | 470 | 13 | 513 | 6.33e-162 | 468 |
| Msa1227830 | AT2G01070.1 | 40.918 | 501 | 239 | 14 | 11 | 470 | 12 | 496 | 1.43e-116 | 351 |
| Msa1227830 | AT1G72480.1 | 40.396 | 505 | 233 | 11 | 23 | 470 | 16 | 509 | 3.28e-113 | 343 |
| Msa1227830 | AT2G01070.2 | 41.348 | 445 | 212 | 11 | 11 | 414 | 12 | 448 | 1.46e-105 | 322 |
| Msa1227830 | AT1G10980.1 | 37.160 | 514 | 236 | 16 | 7 | 450 | 2 | 498 | 7.17e-96 | 299 |
Find 104 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCACCAAGATTACAATTT+TGG | 0.064249 | 8_2:-3222154 | None:intergenic |
| CTTGGATTATTCCCACTTTC+TGG | 0.083215 | 8_2:+3223704 | Msa1227830:CDS |
| TGCTGGTGATATGTGTTCTT+TGG | 0.199971 | 8_2:+3223749 | Msa1227830:CDS |
| ATTTGCCACAGCTCACTTAA+AGG | 0.223100 | 8_2:-3223679 | None:intergenic |
| GGCCTATGGGAATTACTATA+TGG | 0.256469 | 8_2:+3222609 | Msa1227830:intron |
| ACAGCAAATTAAATCAGATT+TGG | 0.273346 | 8_2:-3222111 | None:intergenic |
| AAGGAGAAACTTGGCTAAAC+TGG | 0.284415 | 8_2:+3223381 | Msa1227830:CDS |
| TGGATGATGGCGGAGTGTTT+AGG | 0.302576 | 8_2:-3221999 | None:intergenic |
| GCTGGTGATATGTGTTCTTT+GGG | 0.306978 | 8_2:+3223750 | Msa1227830:CDS |
| GTATCTAAAGTTACGGTTCT+TGG | 0.307265 | 8_2:+3222734 | Msa1227830:CDS |
| TATCTAAAGTTACGGTTCTT+GGG | 0.308794 | 8_2:+3222735 | Msa1227830:CDS |
| TTGGTTGTGTCTATGGGATA+TGG | 0.311354 | 8_2:+3222680 | Msa1227830:CDS |
| AACCCTAATGGTTATCTTCC+CGG | 0.319253 | 8_2:+3222371 | Msa1227830:CDS |
| CAGCAAATTAAATCAGATTT+GGG | 0.321303 | 8_2:-3222110 | None:intergenic |
| CTCCAAGGTACCACTGTTAC+TGG | 0.323139 | 8_2:+3222332 | Msa1227830:intron |
| CCAAAGACATAAAAGCATAA+AGG | 0.349489 | 8_2:-3222415 | None:intergenic |
| AAAACCCAAAATTGTAATCT+TGG | 0.350341 | 8_2:+3222149 | Msa1227830:CDS |
| GGATGATGGCGGAGTGTTTA+GGG | 0.353685 | 8_2:-3221998 | None:intergenic |
| CTGCATTTGGCCGTGGATGA+TGG | 0.361558 | 8_2:-3222012 | None:intergenic |
| TTTCCGGGAAGATAACCATT+AGG | 0.362321 | 8_2:-3222374 | None:intergenic |
| TACTAATCAAATTGTTCATA+TGG | 0.365544 | 8_2:+3222241 | Msa1227830:CDS |
| GCTTTCATATACTCTATTGC+TGG | 0.374709 | 8_2:+3223732 | Msa1227830:CDS |
| TTCCGGGAAGATAACCATTA+GGG | 0.380604 | 8_2:-3222373 | None:intergenic |
| AGTGCCACCGATCTTACATT+TGG | 0.385955 | 8_2:+3224827 | Msa1227830:CDS |
| CTGTTAAGAAGACGCTTTCA+AGG | 0.392397 | 8_2:+3222648 | Msa1227830:CDS |
| CAAAGACATAAAAGCATAAA+GGG | 0.393526 | 8_2:-3222414 | None:intergenic |
| ATCGAAGCGTTAACGTTGTT+TGG | 0.396895 | 8_2:-3221858 | None:intergenic |
| TGCTACTGGTACTAGGCCTA+TGG | 0.415793 | 8_2:+3222595 | Msa1227830:intron |
| GCGGTGAGTGAAGGGTTGTT+TGG | 0.422879 | 8_2:-3221892 | None:intergenic |
| ATTACTGCCGTCATTGCTCT+TGG | 0.422985 | 8_2:+3222527 | Msa1227830:CDS |
| GCATTAATTTGAACAGTTTG+AGG | 0.426226 | 8_2:-3222266 | None:intergenic |
| CATTGCATGGATTGGCTTTG+AGG | 0.426377 | 8_2:+3223453 | Msa1227830:CDS |
| TGAAAGCAGGCACCAGAAAG+TGG | 0.426991 | 8_2:-3223716 | None:intergenic |
| GACCGGTGTTCTGCTGCATT+TGG | 0.427027 | 8_2:-3222025 | None:intergenic |
| CTGTTACTGGTAGAACTGTT+TGG | 0.433697 | 8_2:+3222345 | Msa1227830:CDS |
| GAATGGTTGAGATGGCGTTT+TGG | 0.433793 | 8_2:+3222549 | Msa1227830:CDS |
| TCTTTCCTTCCGCTCAAGCT+TGG | 0.434109 | 8_2:-3224795 | None:intergenic |
| CTACTGTCCATTGCATGGAT+TGG | 0.441540 | 8_2:+3223445 | Msa1227830:CDS |
| CCATAAAGGACATACCTAGT+AGG | 0.447378 | 8_2:-3223787 | None:intergenic |
| CTATGGGATATGGTGTTGTT+AGG | 0.454199 | 8_2:+3222690 | Msa1227830:CDS |
| AGGGTTGTTTGGAGTAGTAA+TGG | 0.461845 | 8_2:-3221881 | None:intergenic |
| ACTGTTCAAATTAATGCTAC+TGG | 0.465687 | 8_2:+3222272 | Msa1227830:CDS |
| CTCCTTCTCGTAACCCTACT+AGG | 0.467421 | 8_2:+3223773 | Msa1227830:CDS |
| AATGCTTTCTTCTTCCATGC+CGG | 0.468243 | 8_2:+3221918 | Msa1227830:CDS |
| GTGAGCTGTGGCAAATTGCT+TGG | 0.480389 | 8_2:+3223686 | Msa1227830:CDS |
| GCCTATGGGAATTACTATAT+GGG | 0.488710 | 8_2:+3222610 | Msa1227830:CDS |
| GGGTGTTGTATCTAAAGTTA+CGG | 0.495182 | 8_2:+3222727 | Msa1227830:CDS |
| TGCCGTCATTGCTCTTGGAA+TGG | 0.495290 | 8_2:+3222532 | Msa1227830:CDS |
| AAAATCCTAACTTTCCCAAA+AGG | 0.499286 | 8_2:+3222198 | Msa1227830:CDS |
| TGTTCTGCTGCATTTGGCCG+TGG | 0.505745 | 8_2:-3222019 | None:intergenic |
| CTTGAGCGGAAGGAAAGAAT+AGG | 0.509552 | 8_2:+3224800 | Msa1227830:CDS |
| ATCTAAAGTTACGGTTCTTG+GGG | 0.514793 | 8_2:+3222736 | Msa1227830:CDS |
| CTGTGCTACTGTCCATTGCA+TGG | 0.515135 | 8_2:+3223440 | Msa1227830:CDS |
| CAAAGTCATCTGTTCCCTCT+AGG | 0.518582 | 8_2:-3224715 | None:intergenic |
| GATGTAGACAAGGAGAAACT+TGG | 0.519471 | 8_2:+3223372 | Msa1227830:intron |
| ACTGTTTGGAGAAACCCTAA+TGG | 0.521221 | 8_2:+3222359 | Msa1227830:CDS |
| TACATTTGGAGATGATATTG+AGG | 0.523224 | 8_2:+3224841 | Msa1227830:CDS |
| GTCAAAGACCGTAACCGTAT+CGG | 0.529210 | 8_2:+3222071 | Msa1227830:intron |
| GATGGATTCAAAACGGATGA+AGG | 0.530261 | 8_2:-3221964 | None:intergenic |
| CATAAAGGACATACCTAGTA+GGG | 0.531044 | 8_2:-3223786 | None:intergenic |
| TGAAGGAGATGGATTCAAAA+CGG | 0.536886 | 8_2:-3221971 | None:intergenic |
| TGGGAAATCTAAACTGCTGT+TGG | 0.537710 | 8_2:+3222826 | Msa1227830:CDS |
| AGCATTGGAGCGGTGAGTGA+AGG | 0.542621 | 8_2:-3221901 | None:intergenic |
| GGCATCCAAGCTTGAGCGGA+AGG | 0.544031 | 8_2:+3224790 | Msa1227830:CDS |
| ATCATCTCCAAATGTAAGAT+CGG | 0.544128 | 8_2:-3224834 | None:intergenic |
| AACCATTCCAAGAGCAATGA+CGG | 0.548462 | 8_2:-3222534 | None:intergenic |
| GCAATAGAGTATATGAAAGC+AGG | 0.548865 | 8_2:-3223729 | None:intergenic |
| TTTAGGGCGAATGAAGGAGA+TGG | 0.549099 | 8_2:-3221982 | None:intergenic |
| TGCTCTTGGAATGGTTGAGA+TGG | 0.551163 | 8_2:+3222541 | Msa1227830:CDS |
| GCTACTGGTACTAGGCCTAT+GGG | 0.555658 | 8_2:+3222596 | Msa1227830:intron |
| GCATTGGAGCGGTGAGTGAA+GGG | 0.573245 | 8_2:-3221900 | None:intergenic |
| AGCAGTGTAGCAAAGATGAC+TGG | 0.574541 | 8_2:+3224761 | Msa1227830:CDS |
| CTCAAAGCCAATCCATGCAA+TGG | 0.575344 | 8_2:-3223452 | None:intergenic |
| TTCAAAACGGATGAAGGAAG+AGG | 0.578391 | 8_2:-3221958 | None:intergenic |
| GTTAGGCCAACGCTCGTCGA+GGG | 0.580698 | 8_2:+3222707 | Msa1227830:CDS |
| TCTAGATATGCATACCTAGA+GGG | 0.580896 | 8_2:+3224701 | Msa1227830:intron |
| AGAGAGCTTCAGCACCGGCA+TGG | 0.581638 | 8_2:-3221932 | None:intergenic |
| GGAGTGTTTAGGGCGAATGA+AGG | 0.582545 | 8_2:-3221988 | None:intergenic |
| ACAGTAGCACAGACACTGCA+AGG | 0.591583 | 8_2:-3223429 | None:intergenic |
| GGAGAAGAGAGCTTCAGCAC+CGG | 0.595294 | 8_2:-3221937 | None:intergenic |
| TGTTAGGCCAACGCTCGTCG+AGG | 0.603938 | 8_2:+3222706 | Msa1227830:CDS |
| AAAGCATAAAGGGTGATCAA+AGG | 0.610010 | 8_2:-3222404 | None:intergenic |
| ACAACACCCTCGACGAGCGT+TGG | 0.612100 | 8_2:-3222713 | None:intergenic |
| AAACACTCCGCCATCATCCA+CGG | 0.614615 | 8_2:+3222002 | Msa1227830:CDS |
| GGCATGGAAGAAGAAAGCAT+TGG | 0.615223 | 8_2:-3221916 | None:intergenic |
| GGCCAAATGCAGCAGAACAC+CGG | 0.615620 | 8_2:+3222023 | Msa1227830:CDS |
| TTCTAGATATGCATACCTAG+AGG | 0.618947 | 8_2:+3224700 | Msa1227830:intron |
| GAAAGCAGGCACCAGAAAGT+GGG | 0.620396 | 8_2:-3223715 | None:intergenic |
| AACAGATGACTTTGACGAGG+AGG | 0.624175 | 8_2:+3224724 | Msa1227830:CDS |
| ATCTCCAAATGTAAGATCGG+TGG | 0.626067 | 8_2:-3224831 | None:intergenic |
| ATGTGGCATCCAAGCTTGAG+CGG | 0.627728 | 8_2:+3224786 | Msa1227830:CDS |
| TCTAAAGTTACGGTTCTTGG+GGG | 0.628130 | 8_2:+3222737 | Msa1227830:CDS |
| ACAGATGACTTTGACGAGGA+GGG | 0.631061 | 8_2:+3224725 | Msa1227830:CDS |
| CTAAAGTTACGGTTCTTGGG+GGG | 0.633335 | 8_2:+3222738 | Msa1227830:CDS |
| CTGATCCTTTAAGTGAGCTG+TGG | 0.639919 | 8_2:+3223674 | Msa1227830:CDS |
| AGCAAAGATGACTGGAGATG+TGG | 0.653340 | 8_2:+3224769 | Msa1227830:CDS |
| AACAGTTCTACCAGTAACAG+TGG | 0.660327 | 8_2:-3222342 | None:intergenic |
| CAGTAGCACAGACACTGCAA+GGG | 0.665289 | 8_2:-3223428 | None:intergenic |
| CATTTGGCCGTGGATGATGG+CGG | 0.668061 | 8_2:-3222009 | None:intergenic |
| AAAGACCGTAACCGTATCGG+TGG | 0.670710 | 8_2:+3222074 | Msa1227830:CDS |
| GGAAGAAGAAAGCATTGGAG+CGG | 0.676504 | 8_2:-3221911 | None:intergenic |
| GCCCATATAGTAATTCCCAT+AGG | 0.680213 | 8_2:-3222611 | None:intergenic |
| TACCTAGTAGGGTTACGAGA+AGG | 0.690753 | 8_2:-3223775 | None:intergenic |
| GGGAACAGATGACTTTGACG+AGG | 0.724867 | 8_2:+3224721 | Msa1227830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTCTATTTGTTGTTTATT+TGG | + | chr8_2:3223350-3223369 | Msa1227830:intron | 15.0% |
| !! | ATCATATATGAAACTTTATT+TGG | + | chr8_2:3223860-3223879 | Msa1227830:intron | 15.0% |
| !! | TGTATTTAATGATCAATAAT+AGG | + | chr8_2:3224211-3224230 | Msa1227830:intron | 15.0% |
| !! | TACTAATCAAATTGTTCATA+TGG | + | chr8_2:3222241-3222260 | Msa1227830:CDS | 20.0% |
| !! | ATTCACTACAATCAATATTT+GGG | - | chr8_2:3223010-3223029 | None:intergenic | 20.0% |
| !! | AAAAAAAATACATTAGCACA+AGG | - | chr8_2:3223953-3223972 | None:intergenic | 20.0% |
| !!! | AAAGGTATAAAGATATCAAA+TGG | - | chr8_2:3224128-3224147 | None:intergenic | 20.0% |
| ! | CAGCAAATTAAATCAGATTT+GGG | - | chr8_2:3222113-3222132 | None:intergenic | 25.0% |
| ! | ACAGCAAATTAAATCAGATT+TGG | - | chr8_2:3222114-3222133 | None:intergenic | 25.0% |
| ! | AAAACCCAAAATTGTAATCT+TGG | + | chr8_2:3222149-3222168 | Msa1227830:CDS | 25.0% |
| !! | TTCACCAAGATTACAATTTT+GGG | - | chr8_2:3222156-3222175 | None:intergenic | 25.0% |
| !!! | AAAAAAGTTTTGAGCCTTTT+GGG | - | chr8_2:3222215-3222234 | None:intergenic | 25.0% |
| !!! | AAAAAAAGTTTTGAGCCTTT+TGG | - | chr8_2:3222216-3222235 | None:intergenic | 25.0% |
| !! | CAAAGACATAAAAGCATAAA+GGG | - | chr8_2:3222417-3222436 | None:intergenic | 25.0% |
| !!! | TTTTGAGATTTCTTCACTTT+TGG | + | chr8_2:3222465-3222484 | Msa1227830:CDS | 25.0% |
| !!! | TATGCTAATTTTAATGCTAC+TGG | + | chr8_2:3222581-3222600 | Msa1227830:intron | 25.0% |
| ! | TTCACTACAATCAATATTTG+GGG | - | chr8_2:3223009-3223028 | None:intergenic | 25.0% |
| ! | GATTCACTACAATCAATATT+TGG | - | chr8_2:3223011-3223030 | None:intergenic | 25.0% |
| !! | TATCAACTGATTTACACATT+TGG | + | chr8_2:3223148-3223167 | Msa1227830:intron | 25.0% |
| ! | TATGTAATCATGTGTTTAGA+TGG | + | chr8_2:3223189-3223208 | Msa1227830:intron | 25.0% |
| ! | ATGTAATCATGTGTTTAGAT+GGG | + | chr8_2:3223190-3223209 | Msa1227830:intron | 25.0% |
| ! | GTTTCTATAAATGTGGAATA+TGG | + | chr8_2:3223268-3223287 | Msa1227830:intron | 25.0% |
| !!! | CAAGGGTATTTGTAAATTTT+CGG | - | chr8_2:3223414-3223433 | None:intergenic | 25.0% |
| ! | TATGAAAATCAGAAAATGCT+TGG | - | chr8_2:3223561-3223580 | None:intergenic | 25.0% |
| !! | TGTAACAGAAAATGATGTTT+TGG | + | chr8_2:3223922-3223941 | Msa1227830:intron | 25.0% |
| !! | TATCTAGAAAATAAGGCATT+TGG | - | chr8_2:3224280-3224299 | None:intergenic | 25.0% |
| ! | GTTCATCTATCTAGAAAATA+AGG | - | chr8_2:3224287-3224306 | None:intergenic | 25.0% |
| !! | ATCTTGAGAAGATTTAGAAT+AGG | + | chr8_2:3224463-3224482 | Msa1227830:intron | 25.0% |
| ! | AAGTGAAATGAATCAAATGA+TGG | - | chr8_2:3224579-3224598 | None:intergenic | 25.0% |
| TGAAATAAAAACCACCGATA+CGG | - | chr8_2:3222088-3222107 | None:intergenic | 30.0% | |
| !!! | TTTGGGTTTTAGAGAGAAAT+GGG | - | chr8_2:3222139-3222158 | None:intergenic | 30.0% |
| !!! | TTTTGGGTTTTAGAGAGAAA+TGG | - | chr8_2:3222140-3222159 | None:intergenic | 30.0% |
| ! | CTTCACCAAGATTACAATTT+TGG | - | chr8_2:3222157-3222176 | None:intergenic | 30.0% |
| ! | TTTGGGAAAGTTAGGATTTT+GGG | - | chr8_2:3222198-3222217 | None:intergenic | 30.0% |
| !! | TTTTGGGAAAGTTAGGATTT+TGG | - | chr8_2:3222199-3222218 | None:intergenic | 30.0% |
| AAAATCCTAACTTTCCCAAA+AGG | + | chr8_2:3222198-3222217 | Msa1227830:CDS | 30.0% | |
| !!! | AGGCTCAAAACTTTTTTTCA+AGG | + | chr8_2:3222218-3222237 | Msa1227830:CDS | 30.0% |
| ! | GCATTAATTTGAACAGTTTG+AGG | - | chr8_2:3222269-3222288 | None:intergenic | 30.0% |
| ACTGTTCAAATTAATGCTAC+TGG | + | chr8_2:3222272-3222291 | Msa1227830:CDS | 30.0% | |
| ! | CCAAAGACATAAAAGCATAA+AGG | - | chr8_2:3222418-3222437 | None:intergenic | 30.0% |
| ! | CCTTTATGCTTTTATGTCTT+TGG | + | chr8_2:3222415-3222434 | Msa1227830:CDS | 30.0% |
| !! | TCTTTGGCTTATCTTTTACT+TGG | + | chr8_2:3222431-3222450 | Msa1227830:CDS | 30.0% |
| !! | ATTTTAATGCTACTGGTACT+AGG | + | chr8_2:3222588-3222607 | Msa1227830:intron | 30.0% |
| ! | TATCTAAAGTTACGGTTCTT+GGG | + | chr8_2:3222735-3222754 | Msa1227830:CDS | 30.0% |
| !! | TTTGAGCTTTTTGAGCATTT+GGG | + | chr8_2:3222785-3222804 | Msa1227830:CDS | 30.0% |
| ! | GAAACATCAATGACTTTTCT+GGG | + | chr8_2:3222807-3222826 | Msa1227830:CDS | 30.0% |
| AATGTAAACAACACAACCAT+GGG | - | chr8_2:3223072-3223091 | None:intergenic | 30.0% | |
| AAATGTAAACAACACAACCA+TGG | - | chr8_2:3223073-3223092 | None:intergenic | 30.0% | |
| GTTTGTGGTTTCTATAAATG+TGG | + | chr8_2:3223261-3223280 | Msa1227830:intron | 30.0% | |
| TAACTCACATATCTTCTACA+AGG | - | chr8_2:3223305-3223324 | None:intergenic | 30.0% | |
| TTGTAGAAGATATGTGAGTT+AGG | + | chr8_2:3223304-3223323 | Msa1227830:intron | 30.0% | |
| TGTTTATTTGGATGTAGACA+AGG | + | chr8_2:3223362-3223381 | Msa1227830:intron | 30.0% | |
| !! | TCATGAATGGTGTTATTAAG+AGG | + | chr8_2:3223815-3223834 | Msa1227830:intron | 30.0% |
| !! | CATGAATGGTGTTATTAAGA+GGG | + | chr8_2:3223816-3223835 | Msa1227830:intron | 30.0% |
| ACAACTAACATAACTAGCAA+TGG | - | chr8_2:3223895-3223914 | None:intergenic | 30.0% | |
| TGTAAACTCTTAGATGAACT+AGG | + | chr8_2:3224064-3224083 | Msa1227830:intron | 30.0% | |
| AATACAATAGAAACCCATCA+TGG | - | chr8_2:3224197-3224216 | None:intergenic | 30.0% | |
| AGGTTTATTACTAGAAAAGC+AGG | + | chr8_2:3224231-3224250 | Msa1227830:intron | 30.0% | |
| GGTTTATTACTAGAAAAGCA+GGG | + | chr8_2:3224232-3224251 | Msa1227830:intron | 30.0% | |
| ! | AAATAAGGCATTTGGTCAAA+AGG | - | chr8_2:3224272-3224291 | None:intergenic | 30.0% |
| ! | AGGCAGAGAAATTTTGTAAA+CGG | - | chr8_2:3224347-3224366 | None:intergenic | 30.0% |
| TATCGTTTGTGAAGAACTTT+AGG | + | chr8_2:3224372-3224391 | Msa1227830:intron | 30.0% | |
| TGAAATGAATCAAATGATGG+AGG | - | chr8_2:3224576-3224595 | None:intergenic | 30.0% | |
| ATCATCTCCAAATGTAAGAT+CGG | - | chr8_2:3224837-3224856 | None:intergenic | 30.0% | |
| TACATTTGGAGATGATATTG+AGG | + | chr8_2:3224841-3224860 | Msa1227830:CDS | 30.0% | |
| ! | TGAAGGAGATGGATTCAAAA+CGG | - | chr8_2:3221974-3221993 | None:intergenic | 35.0% |
| ! | TTGGGAAAGTTAGGATTTTG+GGG | - | chr8_2:3222197-3222216 | None:intergenic | 35.0% |
| ! | TTTTGTGATCCTAATCTCCA+AGG | + | chr8_2:3222317-3222336 | Msa1227830:intron | 35.0% |
| ! | ATCAAAGGTTGCATTTTTCC+GGG | - | chr8_2:3222392-3222411 | None:intergenic | 35.0% |
| ! | GATCAAAGGTTGCATTTTTC+CGG | - | chr8_2:3222393-3222412 | None:intergenic | 35.0% |
| AAAGCATAAAGGGTGATCAA+AGG | - | chr8_2:3222407-3222426 | None:intergenic | 35.0% | |
| !! | TCTTCACTTTTGGAAAGAGA+AGG | + | chr8_2:3222475-3222494 | Msa1227830:CDS | 35.0% |
| GCCTATGGGAATTACTATAT+GGG | + | chr8_2:3222610-3222629 | Msa1227830:CDS | 35.0% | |
| !! | CTTTTGTTGGTTGTGTCTAT+GGG | + | chr8_2:3222674-3222693 | Msa1227830:CDS | 35.0% |
| ! | GGGTGTTGTATCTAAAGTTA+CGG | + | chr8_2:3222727-3222746 | Msa1227830:CDS | 35.0% |
| ! | GTATCTAAAGTTACGGTTCT+TGG | + | chr8_2:3222734-3222753 | Msa1227830:CDS | 35.0% |
| ! | ATCTAAAGTTACGGTTCTTG+GGG | + | chr8_2:3222736-3222755 | Msa1227830:CDS | 35.0% |
| !! | GTTTGAGCTTTTTGAGCATT+TGG | + | chr8_2:3222784-3222803 | Msa1227830:CDS | 35.0% |
| ! | GGAAACATCAATGACTTTTC+TGG | + | chr8_2:3222806-3222825 | Msa1227830:CDS | 35.0% |
| ATAGAATGAAGCATGAGTCA+AGG | - | chr8_2:3222868-3222887 | None:intergenic | 35.0% | |
| TTGACTCATGCTTCATTCTA+TGG | + | chr8_2:3222867-3222886 | Msa1227830:intron | 35.0% | |
| !!! | TTTCTCCAAGGTTTTAGACA+AGG | - | chr8_2:3222903-3222922 | None:intergenic | 35.0% |
| TGATTGTAGTGAATCTGCAT+CGG | + | chr8_2:3223016-3223035 | Msa1227830:intron | 35.0% | |
| TCTTCTACAAGGTCACAAAA+AGG | - | chr8_2:3223294-3223313 | None:intergenic | 35.0% | |
| AAAATGCTTGGATACTTCTC+GGG | - | chr8_2:3223549-3223568 | None:intergenic | 35.0% | |
| GAAAATGCTTGGATACTTCT+CGG | - | chr8_2:3223550-3223569 | None:intergenic | 35.0% | |
| GCAATAGAGTATATGAAAGC+AGG | - | chr8_2:3223732-3223751 | None:intergenic | 35.0% | |
| GCTTTCATATACTCTATTGC+TGG | + | chr8_2:3223732-3223751 | Msa1227830:CDS | 35.0% | |
| CATAAAGGACATACCTAGTA+GGG | - | chr8_2:3223789-3223808 | None:intergenic | 35.0% | |
| CTACTAGGTATGTCCTTTAT+GGG | + | chr8_2:3223788-3223807 | Msa1227830:intron | 35.0% | |
| TACTAGGTATGTCCTTTATG+GGG | + | chr8_2:3223789-3223808 | Msa1227830:intron | 35.0% | |
| GCAATTTATACTGCACACTT+TGG | + | chr8_2:3223994-3224013 | Msa1227830:intron | 35.0% | |
| ATTTATACTGCACACTTTGG+TGG | + | chr8_2:3223997-3224016 | Msa1227830:intron | 35.0% | |
| ACTCTTAGATGAACTAGGAT+AGG | + | chr8_2:3224069-3224088 | Msa1227830:intron | 35.0% | |
| TCTTTATACCTTTCTTGCGA+AGG | + | chr8_2:3224135-3224154 | Msa1227830:intron | 35.0% | |
| AATAATTGCCTTCGCAAGAA+AGG | - | chr8_2:3224146-3224165 | None:intergenic | 35.0% | |
| ! | AAACGGTATTTGCTGACAAT+TGG | - | chr8_2:3224330-3224349 | None:intergenic | 35.0% |
| TCTTCACAAACGATACGTAT+AGG | - | chr8_2:3224367-3224386 | None:intergenic | 35.0% | |
| !! | TATACTAGTCTCTAGCCTTA+TGG | + | chr8_2:3224437-3224456 | Msa1227830:intron | 35.0% |
| TCTTCTCAAGATTCACCATA+AGG | - | chr8_2:3224455-3224474 | None:intergenic | 35.0% | |
| TTGCCAATTTAACCCAAAAG+TGG | + | chr8_2:3224492-3224511 | Msa1227830:intron | 35.0% | |
| !!! | ATGCCACTTTTGGGTTAAAT+TGG | - | chr8_2:3224498-3224517 | None:intergenic | 35.0% |
| AATTTAACCCAAAAGTGGCA+TGG | + | chr8_2:3224497-3224516 | Msa1227830:intron | 35.0% | |
| !!! | AGTTTTTCCATGCCACTTTT+GGG | - | chr8_2:3224507-3224526 | None:intergenic | 35.0% |
| AGTTACTAATGCAACTTCTC+AGG | - | chr8_2:3224537-3224556 | None:intergenic | 35.0% | |
| TCTCTAATTCTCCTGATTCA+CGG | + | chr8_2:3224601-3224620 | Msa1227830:intron | 35.0% | |
| CCAGCAAAAACAAAAAAGGT+GGG | - | chr8_2:3224641-3224660 | None:intergenic | 35.0% | |
| ACCAGCAAAAACAAAAAAGG+TGG | - | chr8_2:3224642-3224661 | None:intergenic | 35.0% | |
| GACACCAGCAAAAACAAAAA+AGG | - | chr8_2:3224645-3224664 | None:intergenic | 35.0% | |
| TTCTAGATATGCATACCTAG+AGG | + | chr8_2:3224700-3224719 | Msa1227830:intron | 35.0% | |
| TCTAGATATGCATACCTAGA+GGG | + | chr8_2:3224701-3224720 | Msa1227830:intron | 35.0% | |
| ! | ATCGAAGCGTTAACGTTGTT+TGG | - | chr8_2:3221861-3221880 | None:intergenic | 40.0% |
| ! | AGGGTTGTTTGGAGTAGTAA+TGG | - | chr8_2:3221884-3221903 | None:intergenic | 40.0% |
| AATGCTTTCTTCTTCCATGC+CGG | + | chr8_2:3221918-3221937 | Msa1227830:CDS | 40.0% | |
| TTCAAAACGGATGAAGGAAG+AGG | - | chr8_2:3221961-3221980 | None:intergenic | 40.0% | |
| ! | GATGGATTCAAAACGGATGA+AGG | - | chr8_2:3221967-3221986 | None:intergenic | 40.0% |
| AAAAACCACCGATACGGTTA+CGG | - | chr8_2:3222082-3222101 | None:intergenic | 40.0% | |
| ! | TGGGAAAGTTAGGATTTTGG+GGG | - | chr8_2:3222196-3222215 | None:intergenic | 40.0% |
| !! | TTGAGCCTTTTGGGAAAGTT+AGG | - | chr8_2:3222206-3222225 | None:intergenic | 40.0% |
| AACAGTTCTACCAGTAACAG+TGG | - | chr8_2:3222345-3222364 | None:intergenic | 40.0% | |
| CTGTTACTGGTAGAACTGTT+TGG | + | chr8_2:3222345-3222364 | Msa1227830:CDS | 40.0% | |
| ACTGTTTGGAGAAACCCTAA+TGG | + | chr8_2:3222359-3222378 | Msa1227830:CDS | 40.0% | |
| AACCCTAATGGTTATCTTCC+CGG | + | chr8_2:3222371-3222390 | Msa1227830:CDS | 40.0% | |
| TTCCGGGAAGATAACCATTA+GGG | - | chr8_2:3222376-3222395 | None:intergenic | 40.0% | |
| TTTCCGGGAAGATAACCATT+AGG | - | chr8_2:3222377-3222396 | None:intergenic | 40.0% | |
| ! | GGCTTATCTTTTACTTGGTC+TGG | + | chr8_2:3222436-3222455 | Msa1227830:CDS | 40.0% |
| ! | ATCTTTTACTTGGTCTGGCA+TGG | + | chr8_2:3222441-3222460 | Msa1227830:CDS | 40.0% |
| AACCATTCCAAGAGCAATGA+CGG | - | chr8_2:3222537-3222556 | None:intergenic | 40.0% | |
| GGCCTATGGGAATTACTATA+TGG | + | chr8_2:3222609-3222628 | Msa1227830:intron | 40.0% | |
| GCCCATATAGTAATTCCCAT+AGG | - | chr8_2:3222614-3222633 | None:intergenic | 40.0% | |
| CTGTTAAGAAGACGCTTTCA+AGG | + | chr8_2:3222648-3222667 | Msa1227830:CDS | 40.0% | |
| !!! | GCTTTCAAGGTTGCTTTTGT+TGG | + | chr8_2:3222661-3222680 | Msa1227830:CDS | 40.0% |
| !! | GCTTTTGTTGGTTGTGTCTA+TGG | + | chr8_2:3222673-3222692 | Msa1227830:CDS | 40.0% |
| TTGGTTGTGTCTATGGGATA+TGG | + | chr8_2:3222680-3222699 | Msa1227830:CDS | 40.0% | |
| !! | CTATGGGATATGGTGTTGTT+AGG | + | chr8_2:3222690-3222709 | Msa1227830:CDS | 40.0% |
| ! | TCTAAAGTTACGGTTCTTGG+GGG | + | chr8_2:3222737-3222756 | Msa1227830:CDS | 40.0% |
| TGGGAAATCTAAACTGCTGT+TGG | + | chr8_2:3222826-3222845 | Msa1227830:CDS | 40.0% | |
| ! | CTCTTCCTTGTCTAAAACCT+TGG | + | chr8_2:3222895-3222914 | Msa1227830:intron | 40.0% |
| TAAAACCTTGGAGAAACTGC+AGG | + | chr8_2:3222907-3222926 | Msa1227830:intron | 40.0% | |
| CATAACCCAACAGAGATTAG+AGG | - | chr8_2:3222983-3223002 | None:intergenic | 40.0% | |
| ATCGGTCCTTTATGCTAGAA+TGG | + | chr8_2:3223034-3223053 | Msa1227830:intron | 40.0% | |
| GTGTAGCCATTCTAGCATAA+AGG | - | chr8_2:3223043-3223062 | None:intergenic | 40.0% | |
| GGGTTACTTAGTAAGGTTTG+TGG | + | chr8_2:3223246-3223265 | Msa1227830:intron | 40.0% | |
| GATGTAGACAAGGAGAAACT+TGG | + | chr8_2:3223372-3223391 | Msa1227830:intron | 40.0% | |
| AAGGAGAAACTTGGCTAAAC+TGG | + | chr8_2:3223381-3223400 | Msa1227830:CDS | 40.0% | |
| AAATGCTTGGATACTTCTCG+GGG | - | chr8_2:3223548-3223567 | None:intergenic | 40.0% | |
| ATTTGCCACAGCTCACTTAA+AGG | - | chr8_2:3223682-3223701 | None:intergenic | 40.0% | |
| CTTGGATTATTCCCACTTTC+TGG | + | chr8_2:3223704-3223723 | Msa1227830:CDS | 40.0% | |
| TGCTGGTGATATGTGTTCTT+TGG | + | chr8_2:3223749-3223768 | Msa1227830:CDS | 40.0% | |
| GCTGGTGATATGTGTTCTTT+GGG | + | chr8_2:3223750-3223769 | Msa1227830:CDS | 40.0% | |
| CCATAAAGGACATACCTAGT+AGG | - | chr8_2:3223790-3223809 | None:intergenic | 40.0% | |
| CCTACTAGGTATGTCCTTTA+TGG | + | chr8_2:3223787-3223806 | Msa1227830:intron | 40.0% | |
| CATTCATGAAGACCCCATAA+AGG | - | chr8_2:3223804-3223823 | None:intergenic | 40.0% | |
| CTTTATGGGGTCTTCATGAA+TGG | + | chr8_2:3223802-3223821 | Msa1227830:intron | 40.0% | |
| CTGACAATTGGACTCAAAAG+TGG | - | chr8_2:3224318-3224337 | None:intergenic | 40.0% | |
| !!! | GAGTTTTTCCATGCCACTTT+TGG | - | chr8_2:3224508-3224527 | None:intergenic | 40.0% |
| AAAGTGGCATGGAAAAACTC+AGG | + | chr8_2:3224508-3224527 | Msa1227830:intron | 40.0% | |
| CTCTAATTCTCCTGATTCAC+GGG | + | chr8_2:3224602-3224621 | Msa1227830:intron | 40.0% | |
| TCTAATTCTCCTGATTCACG+GGG | + | chr8_2:3224603-3224622 | Msa1227830:intron | 40.0% | |
| !!! | CCCACCTTTTTTGTTTTTGC+TGG | + | chr8_2:3224638-3224657 | Msa1227830:intron | 40.0% |
| ATCTCCAAATGTAAGATCGG+TGG | - | chr8_2:3224834-3224853 | None:intergenic | 40.0% | |
| !! | GGAAGAAGAAAGCATTGGAG+CGG | - | chr8_2:3221914-3221933 | None:intergenic | 45.0% |
| ! | GGCATGGAAGAAGAAAGCAT+TGG | - | chr8_2:3221919-3221938 | None:intergenic | 45.0% |
| ! | TTTAGGGCGAATGAAGGAGA+TGG | - | chr8_2:3221985-3222004 | None:intergenic | 45.0% |
| !! | GATGATGGATTCGATGAGAC+CGG | - | chr8_2:3222045-3222064 | None:intergenic | 45.0% |
| ! | GTCTTTGACTTCGAGGATGA+TGG | - | chr8_2:3222060-3222079 | None:intergenic | 45.0% |
| GTCAAAGACCGTAACCGTAT+CGG | + | chr8_2:3222071-3222090 | Msa1227830:intron | 45.0% | |
| ACAGTGGTACCTTGGAGATT+AGG | - | chr8_2:3222329-3222348 | None:intergenic | 45.0% | |
| TACCAGTAACAGTGGTACCT+TGG | - | chr8_2:3222337-3222356 | None:intergenic | 45.0% | |
| ATTACTGCCGTCATTGCTCT+TGG | + | chr8_2:3222527-3222546 | Msa1227830:CDS | 45.0% | |
| TGCTCTTGGAATGGTTGAGA+TGG | + | chr8_2:3222541-3222560 | Msa1227830:CDS | 45.0% | |
| ! | GAATGGTTGAGATGGCGTTT+TGG | + | chr8_2:3222549-3222568 | Msa1227830:CDS | 45.0% |
| CTAAAGTTACGGTTCTTGGG+GGG | + | chr8_2:3222738-3222757 | Msa1227830:CDS | 45.0% | |
| CATGAGTCAAGGCAAACAAC+AGG | - | chr8_2:3222857-3222876 | None:intergenic | 45.0% | |
| AATTGCCTGCAGTTTCTCCA+AGG | - | chr8_2:3222915-3222934 | None:intergenic | 45.0% | |
| CACTGCCTCTAATCTCTGTT+GGG | + | chr8_2:3222975-3222994 | Msa1227830:intron | 45.0% | |
| ACAACACAACCATGGGAGTT+CGG | - | chr8_2:3223065-3223084 | None:intergenic | 45.0% | |
| TAGGACGGGGTTACTTAGTA+AGG | + | chr8_2:3223239-3223258 | Msa1227830:intron | 45.0% | |
| CTACTGTCCATTGCATGGAT+TGG | + | chr8_2:3223445-3223464 | Msa1227830:CDS | 45.0% | |
| CTCAAAGCCAATCCATGCAA+TGG | - | chr8_2:3223455-3223474 | None:intergenic | 45.0% | |
| !! | CATTGCATGGATTGGCTTTG+AGG | + | chr8_2:3223453-3223472 | Msa1227830:CDS | 45.0% |
| AATGCTTGGATACTTCTCGG+GGG | - | chr8_2:3223547-3223566 | None:intergenic | 45.0% | |
| CAGTTGCATTGAAGTACAGC+TGG | - | chr8_2:3223657-3223676 | None:intergenic | 45.0% | |
| CTGATCCTTTAAGTGAGCTG+TGG | + | chr8_2:3223674-3223693 | Msa1227830:CDS | 45.0% | |
| TACCTAGTAGGGTTACGAGA+AGG | - | chr8_2:3223778-3223797 | None:intergenic | 45.0% | |
| ! | CTGCACACTTTGGTGGTTAT+TGG | + | chr8_2:3224004-3224023 | Msa1227830:intron | 45.0% |
| ACTGCTACATCATGCCATGA+TGG | + | chr8_2:3224180-3224199 | Msa1227830:intron | 45.0% | |
| CTGCTACATCATGCCATGAT+GGG | + | chr8_2:3224181-3224200 | Msa1227830:intron | 45.0% | |
| ACATTTAGTCCCCGTGAATC+AGG | - | chr8_2:3224615-3224634 | None:intergenic | 45.0% | |
| CAAAGTCATCTGTTCCCTCT+AGG | - | chr8_2:3224718-3224737 | None:intergenic | 45.0% | |
| AACAGATGACTTTGACGAGG+AGG | + | chr8_2:3224724-3224743 | Msa1227830:CDS | 45.0% | |
| ACAGATGACTTTGACGAGGA+GGG | + | chr8_2:3224725-3224744 | Msa1227830:CDS | 45.0% | |
| AGCAGTGTAGCAAAGATGAC+TGG | + | chr8_2:3224761-3224780 | Msa1227830:CDS | 45.0% | |
| AGCAAAGATGACTGGAGATG+TGG | + | chr8_2:3224769-3224788 | Msa1227830:CDS | 45.0% | |
| CTTGAGCGGAAGGAAAGAAT+AGG | + | chr8_2:3224800-3224819 | Msa1227830:CDS | 45.0% | |
| AGTGCCACCGATCTTACATT+TGG | + | chr8_2:3224827-3224846 | Msa1227830:CDS | 45.0% | |
| ! | GGAGTGTTTAGGGCGAATGA+AGG | - | chr8_2:3221991-3222010 | None:intergenic | 50.0% |
| !! | GGATGATGGCGGAGTGTTTA+GGG | - | chr8_2:3222001-3222020 | None:intergenic | 50.0% |
| !! | TGGATGATGGCGGAGTGTTT+AGG | - | chr8_2:3222002-3222021 | None:intergenic | 50.0% |
| AAACACTCCGCCATCATCCA+CGG | + | chr8_2:3222002-3222021 | Msa1227830:CDS | 50.0% | |
| ! | GGTTACGGTCTTTGACTTCG+AGG | - | chr8_2:3222067-3222086 | None:intergenic | 50.0% |
| AAAGACCGTAACCGTATCGG+TGG | + | chr8_2:3222074-3222093 | Msa1227830:CDS | 50.0% | |
| ! | CTCCAAGGTACCACTGTTAC+TGG | + | chr8_2:3222332-3222351 | Msa1227830:intron | 50.0% |
| TGCCGTCATTGCTCTTGGAA+TGG | + | chr8_2:3222532-3222551 | Msa1227830:CDS | 50.0% | |
| TGCTACTGGTACTAGGCCTA+TGG | + | chr8_2:3222595-3222614 | Msa1227830:intron | 50.0% | |
| GCTACTGGTACTAGGCCTAT+GGG | + | chr8_2:3222596-3222615 | Msa1227830:intron | 50.0% | |
| CCAACAGAGATTAGAGGCAG+TGG | - | chr8_2:3222977-3222996 | None:intergenic | 50.0% | |
| CCACTGCCTCTAATCTCTGT+TGG | + | chr8_2:3222974-3222993 | Msa1227830:intron | 50.0% | |
| CAGTAGCACAGACACTGCAA+GGG | - | chr8_2:3223431-3223450 | None:intergenic | 50.0% | |
| ACAGTAGCACAGACACTGCA+AGG | - | chr8_2:3223432-3223451 | None:intergenic | 50.0% | |
| ! | CTGTGCTACTGTCCATTGCA+TGG | + | chr8_2:3223440-3223459 | Msa1227830:CDS | 50.0% |
| GTGAGCTGTGGCAAATTGCT+TGG | + | chr8_2:3223686-3223705 | Msa1227830:CDS | 50.0% | |
| GAAAGCAGGCACCAGAAAGT+GGG | - | chr8_2:3223718-3223737 | None:intergenic | 50.0% | |
| TGAAAGCAGGCACCAGAAAG+TGG | - | chr8_2:3223719-3223738 | None:intergenic | 50.0% | |
| CTCCTTCTCGTAACCCTACT+AGG | + | chr8_2:3223773-3223792 | Msa1227830:CDS | 50.0% | |
| GGACTCAAAAGTGGCACGAT+GGG | - | chr8_2:3224309-3224328 | None:intergenic | 50.0% | |
| TGGACTCAAAAGTGGCACGA+TGG | - | chr8_2:3224310-3224329 | None:intergenic | 50.0% | |
| GGGAACAGATGACTTTGACG+AGG | + | chr8_2:3224721-3224740 | Msa1227830:CDS | 50.0% | |
| ATGTGGCATCCAAGCTTGAG+CGG | + | chr8_2:3224786-3224805 | Msa1227830:CDS | 50.0% | |
| TCTTTCCTTCCGCTCAAGCT+TGG | - | chr8_2:3224798-3224817 | None:intergenic | 50.0% | |
| GCGGTGAGTGAAGGGTTGTT+TGG | - | chr8_2:3221895-3221914 | None:intergenic | 55.0% | |
| GCATTGGAGCGGTGAGTGAA+GGG | - | chr8_2:3221903-3221922 | None:intergenic | 55.0% | |
| ! | AGCATTGGAGCGGTGAGTGA+AGG | - | chr8_2:3221904-3221923 | None:intergenic | 55.0% |
| GGAGAAGAGAGCTTCAGCAC+CGG | - | chr8_2:3221940-3221959 | None:intergenic | 55.0% | |
| ! | CATTTGGCCGTGGATGATGG+CGG | - | chr8_2:3222012-3222031 | None:intergenic | 55.0% |
| CTGCATTTGGCCGTGGATGA+TGG | - | chr8_2:3222015-3222034 | None:intergenic | 55.0% | |
| TGTTCTGCTGCATTTGGCCG+TGG | - | chr8_2:3222022-3222041 | None:intergenic | 55.0% | |
| GGCCAAATGCAGCAGAACAC+CGG | + | chr8_2:3222023-3222042 | Msa1227830:CDS | 55.0% | |
| GACCGGTGTTCTGCTGCATT+TGG | - | chr8_2:3222028-3222047 | None:intergenic | 55.0% | |
| ATGGCTACACCGAACTCCCA+TGG | + | chr8_2:3223053-3223072 | Msa1227830:intron | 55.0% | |
| ! | AGATGGGTTTCAACCCCCGT+TGG | + | chr8_2:3223206-3223225 | Msa1227830:intron | 55.0% |
| ! | GATGGGTTTCAACCCCCGTT+GGG | + | chr8_2:3223207-3223226 | Msa1227830:intron | 55.0% |
| ATGGGTTTCAACCCCCGTTG+GGG | + | chr8_2:3223208-3223227 | Msa1227830:CDS | 55.0% | |
| !! | AGAGAGCTTCAGCACCGGCA+TGG | - | chr8_2:3221935-3221954 | None:intergenic | 60.0% |
| TGTTAGGCCAACGCTCGTCG+AGG | + | chr8_2:3222706-3222725 | Msa1227830:CDS | 60.0% | |
| GTTAGGCCAACGCTCGTCGA+GGG | + | chr8_2:3222707-3222726 | Msa1227830:CDS | 60.0% | |
| ACAACACCCTCGACGAGCGT+TGG | - | chr8_2:3222716-3222735 | None:intergenic | 60.0% | |
| TGGGTTTCAACCCCCGTTGG+GGG | + | chr8_2:3223209-3223228 | Msa1227830:CDS | 60.0% | |
| TTTCAACCCCCGTTGGGGGT+TGG | + | chr8_2:3223213-3223232 | Msa1227830:CDS | 60.0% | |
| TTCAACCCCCGTTGGGGGTT+GGG | + | chr8_2:3223214-3223233 | Msa1227830:CDS | 60.0% | |
| GGCATCCAAGCTTGAGCGGA+AGG | + | chr8_2:3224790-3224809 | Msa1227830:CDS | 60.0% | |
| TCAACCCCCGTTGGGGGTTG+GGG | + | chr8_2:3223215-3223234 | Msa1227830:CDS | 65.0% | |
| TCCTACCCCCAACCCCCAAC+GGG | - | chr8_2:3223224-3223243 | None:intergenic | 65.0% | |
| GTCCTACCCCCAACCCCCAA+CGG | - | chr8_2:3223225-3223244 | None:intergenic | 65.0% | |
| GTTGGGGGTTGGGGGTAGGA+CGG | + | chr8_2:3223224-3223243 | Msa1227830:CDS | 65.0% | |
| TTGGGGGTTGGGGGTAGGAC+GGG | + | chr8_2:3223225-3223244 | Msa1227830:CDS | 65.0% | |
| CAACCCCCGTTGGGGGTTGG+GGG | + | chr8_2:3223216-3223235 | Msa1227830:CDS | 70.0% | |
| CTACCCCCAACCCCCAACGG+GGG | - | chr8_2:3223222-3223241 | None:intergenic | 70.0% | |
| CCTACCCCCAACCCCCAACG+GGG | - | chr8_2:3223223-3223242 | None:intergenic | 70.0% | |
| TGGGGGTTGGGGGTAGGACG+GGG | + | chr8_2:3223226-3223245 | Msa1227830:CDS | 70.0% | |
| CCCCGTTGGGGGTTGGGGGT+AGG | + | chr8_2:3223220-3223239 | Msa1227830:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 3221798 | 3224880 | 3221798 | ID=Msa1227830;Name=Msa1227830 |
| chr8_2 | mRNA | 3221798 | 3224880 | 3221798 | ID=Msa1227830-mRNA-1;Parent=Msa1227830;Name=Msa1227830-mRNA-1;_AED=0.09;_eAED=0.12;_QI=0|0|0|1|0.28|0.37|8|0|470 |
| chr8_2 | exon | 3221798 | 3222044 | 3221798 | ID=Msa1227830-mRNA-1:exon:930;Parent=Msa1227830-mRNA-1 |
| chr8_2 | exon | 3222072 | 3222293 | 3222072 | ID=Msa1227830-mRNA-1:exon:931;Parent=Msa1227830-mRNA-1 |
| chr8_2 | exon | 3222339 | 3222579 | 3222339 | ID=Msa1227830-mRNA-1:exon:932;Parent=Msa1227830-mRNA-1 |
| chr8_2 | exon | 3222610 | 3222856 | 3222610 | ID=Msa1227830-mRNA-1:exon:933;Parent=Msa1227830-mRNA-1 |
| chr8_2 | exon | 3223208 | 3223255 | 3223208 | ID=Msa1227830-mRNA-1:exon:934;Parent=Msa1227830-mRNA-1 |
| chr8_2 | exon | 3223379 | 3223474 | 3223379 | ID=Msa1227830-mRNA-1:exon:935;Parent=Msa1227830-mRNA-1 |
| chr8_2 | exon | 3223658 | 3223794 | 3223658 | ID=Msa1227830-mRNA-1:exon:936;Parent=Msa1227830-mRNA-1 |
| chr8_2 | exon | 3224706 | 3224880 | 3224706 | ID=Msa1227830-mRNA-1:exon:937;Parent=Msa1227830-mRNA-1 |
| chr8_2 | CDS | 3221798 | 3222044 | 3221798 | ID=Msa1227830-mRNA-1:cds;Parent=Msa1227830-mRNA-1 |
| chr8_2 | CDS | 3222072 | 3222293 | 3222072 | ID=Msa1227830-mRNA-1:cds;Parent=Msa1227830-mRNA-1 |
| chr8_2 | CDS | 3222339 | 3222579 | 3222339 | ID=Msa1227830-mRNA-1:cds;Parent=Msa1227830-mRNA-1 |
| chr8_2 | CDS | 3222610 | 3222856 | 3222610 | ID=Msa1227830-mRNA-1:cds;Parent=Msa1227830-mRNA-1 |
| chr8_2 | CDS | 3223208 | 3223255 | 3223208 | ID=Msa1227830-mRNA-1:cds;Parent=Msa1227830-mRNA-1 |
| chr8_2 | CDS | 3223379 | 3223474 | 3223379 | ID=Msa1227830-mRNA-1:cds;Parent=Msa1227830-mRNA-1 |
| chr8_2 | CDS | 3223658 | 3223794 | 3223658 | ID=Msa1227830-mRNA-1:cds;Parent=Msa1227830-mRNA-1 |
| chr8_2 | CDS | 3224706 | 3224880 | 3224706 | ID=Msa1227830-mRNA-1:cds;Parent=Msa1227830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
