Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396240 | XP_003599342.1 | 93.478 | 230 | 8 | 2 | 1 | 230 | 1 | 223 | 6.38e-153 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396240 | sp|Q9LMK2|LSH6_ARATH | 79.878 | 164 | 32 | 1 | 41 | 204 | 25 | 187 | 3.02e-94 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396240 | G7IWX7 | 93.478 | 230 | 8 | 2 | 1 | 230 | 1 | 223 | 3.05e-153 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025160 | Msa1396240 | 0.830413 | 2.978253e-55 | -8.615850e-47 |
| Msa0072520 | Msa1396240 | 0.820164 | 7.924415e-53 | -8.615850e-47 |
| Msa1384460 | Msa1396240 | 0.815983 | 6.988224e-52 | -8.615850e-47 |
| Msa1396240 | Msa1410160 | 0.800519 | 1.387701e-48 | -8.615850e-47 |
| Msa1396240 | Msa1417370 | 0.821446 | 4.020091e-53 | -8.615850e-47 |
| Msa0619710 | Msa1396240 | 0.801568 | 8.468746e-49 | -8.615850e-47 |
| Msa0620900 | Msa1396240 | 0.817699 | 2.880578e-52 | -8.615850e-47 |
| Msa0706150 | Msa1396240 | 0.813203 | 2.882724e-51 | -8.615850e-47 |
| Msa0795750 | Msa1396240 | 0.809410 | 1.918746e-50 | -8.615850e-47 |
| Msa0194190 | Msa1396240 | -0.800108 | 1.682407e-48 | -8.615850e-47 |
| Msa1227830 | Msa1396240 | 0.814209 | 1.730929e-51 | -8.615850e-47 |
| Msa1283960 | Msa1396240 | 0.814837 | 1.256984e-51 | -8.615850e-47 |
| Msa0365210 | Msa1396240 | 0.818903 | 1.537412e-52 | -8.615850e-47 |
| Msa0384870 | Msa1396240 | 0.824451 | 8.014989e-54 | -8.615850e-47 |
| Msa0435210 | Msa1396240 | 0.812461 | 4.191029e-51 | -8.615850e-47 |
| Msa0437620 | Msa1396240 | 0.994725 | 1.158617e-209 | -8.615850e-47 |
| Msa0457570 | Msa1396240 | 0.809208 | 2.119644e-50 | -8.615850e-47 |
| Msa0479320 | Msa1396240 | 0.824529 | 7.682702e-54 | -8.615850e-47 |
| Msa1021590 | Msa1396240 | 0.802148 | 6.437352e-49 | -8.615850e-47 |
| Msa1040150 | Msa1396240 | 0.839059 | 1.987470e-57 | -8.615850e-47 |
| Msa1078820 | Msa1396240 | 0.806291 | 8.835760e-50 | -8.615850e-47 |
| Msa1105640 | Msa1396240 | 0.813974 | 1.950894e-51 | -8.615850e-47 |
| Msa0262750 | Msa1396240 | 0.830007 | 3.741069e-55 | -8.615850e-47 |
| Msa0300470 | Msa1396240 | 0.833303 | 5.762559e-56 | -8.615850e-47 |
| Msa0337970 | Msa1396240 | 0.834979 | 2.190720e-56 | -8.615850e-47 |
| Msa0342840 | Msa1396240 | 0.822767 | 1.985888e-53 | -8.615850e-47 |
| Msa1123970 | Msa1396240 | 0.816768 | 4.663211e-52 | -8.615850e-47 |
| Msa1128130 | Msa1396240 | 0.814266 | 1.681938e-51 | -8.615850e-47 |
| Msa1154320 | Msa1396240 | 0.817273 | 3.592879e-52 | -8.615850e-47 |
| Msa1166190 | Msa1396240 | 0.800969 | 1.123252e-48 | -8.615850e-47 |
| Msa1169650 | Msa1396240 | 0.816291 | 5.964901e-52 | -8.615850e-47 |
| Msa1191500 | Msa1396240 | 0.812894 | 3.368696e-51 | -8.615850e-47 |
| Msa0550050 | Msa1396240 | 0.812374 | 4.378340e-51 | -8.615850e-47 |
| Msa0570010 | Msa1396240 | 0.807160 | 5.789184e-50 | -8.615850e-47 |
| Msa0921590 | Msa1396240 | 0.804725 | 1.881590e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396240 | MtrunA17_Chr3g0105921 | 93.478 | 230 | 8 | 2 | 1 | 230 | 1 | 223 | 5.87e-157 | 434 |
| Msa1396240 | MtrunA17_Chr5g0431211 | 79.412 | 170 | 26 | 2 | 32 | 194 | 24 | 191 | 1.55e-93 | 273 |
| Msa1396240 | MtrunA17_Chr4g0051251 | 80.597 | 134 | 26 | 0 | 44 | 177 | 43 | 176 | 2.39e-80 | 240 |
| Msa1396240 | MtrunA17_Chr1g0167411 | 80.800 | 125 | 24 | 0 | 47 | 171 | 65 | 189 | 3.11e-78 | 234 |
| Msa1396240 | MtrunA17_Chr1g0187671 | 71.341 | 164 | 43 | 1 | 18 | 177 | 20 | 183 | 1.45e-75 | 227 |
| Msa1396240 | MtrunA17_Chr2g0283861 | 64.286 | 168 | 58 | 1 | 15 | 180 | 1 | 168 | 7.54e-74 | 222 |
| Msa1396240 | MtrunA17_Chr2g0315791 | 74.453 | 137 | 35 | 0 | 44 | 180 | 30 | 166 | 3.05e-73 | 220 |
| Msa1396240 | MtrunA17_Chr7g0261381 | 80.147 | 136 | 27 | 0 | 42 | 177 | 59 | 194 | 4.97e-73 | 221 |
| Msa1396240 | MtrunA17_Chr2g0325831 | 72.263 | 137 | 38 | 0 | 34 | 170 | 10 | 146 | 7.87e-73 | 219 |
| Msa1396240 | MtrunA17_Chr4g0041141 | 67.857 | 140 | 45 | 0 | 31 | 170 | 13 | 152 | 3.33e-72 | 217 |
| Msa1396240 | MtrunA17_Chr1g0183761 | 81.679 | 131 | 24 | 0 | 47 | 177 | 45 | 175 | 1.46e-71 | 217 |
| Msa1396240 | MtrunA17_Chr7g0274631 | 67.123 | 146 | 42 | 4 | 46 | 188 | 26 | 168 | 1.78e-68 | 207 |
| Msa1396240 | MtrunA17_Chr1g0190231 | 78.400 | 125 | 27 | 0 | 47 | 171 | 40 | 164 | 1.91e-66 | 203 |
| Msa1396240 | MtrunA17_Chr8g0379061 | 72.441 | 127 | 35 | 0 | 44 | 170 | 82 | 208 | 1.14e-57 | 182 |
| Msa1396240 | MtrunA17_Chr1g0211641 | 75.000 | 40 | 10 | 0 | 46 | 85 | 70 | 109 | 1.70e-19 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396240 | AT1G07090.1 | 79.878 | 164 | 32 | 1 | 41 | 204 | 25 | 187 | 3.07e-95 | 277 |
| Msa1396240 | AT5G58500.1 | 76.433 | 157 | 34 | 2 | 45 | 200 | 17 | 171 | 7.91e-86 | 253 |
| Msa1396240 | AT2G42610.1 | 67.081 | 161 | 45 | 1 | 36 | 196 | 14 | 166 | 7.50e-73 | 219 |
| Msa1396240 | AT2G42610.2 | 67.081 | 161 | 45 | 1 | 36 | 196 | 14 | 166 | 7.50e-73 | 219 |
| Msa1396240 | AT2G31160.1 | 80.303 | 132 | 26 | 0 | 47 | 178 | 54 | 185 | 1.10e-72 | 221 |
| Msa1396240 | AT3G23290.2 | 83.333 | 126 | 21 | 0 | 46 | 171 | 47 | 172 | 6.38e-70 | 213 |
| Msa1396240 | AT5G28490.1 | 72.917 | 144 | 38 | 1 | 33 | 176 | 12 | 154 | 3.04e-68 | 208 |
| Msa1396240 | AT3G04510.1 | 74.615 | 130 | 33 | 0 | 47 | 176 | 33 | 162 | 4.00e-66 | 203 |
| Msa1396240 | AT1G78815.1 | 68.000 | 125 | 40 | 0 | 46 | 170 | 39 | 163 | 8.71e-66 | 202 |
| Msa1396240 | AT4G18610.1 | 69.841 | 126 | 37 | 1 | 46 | 170 | 36 | 161 | 4.29e-65 | 200 |
| Msa1396240 | AT1G16910.1 | 57.059 | 170 | 62 | 3 | 19 | 188 | 2 | 160 | 5.39e-64 | 196 |
Find 84 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCCGGGTGTCCGTATTT+TGG | 0.255749 | tig0022011:-67172 | Msa1396240:CDS |
| GCGCAGGGAGCAGGTGGATT+CGG | 0.274168 | tig0022011:+67145 | None:intergenic |
| GGTAGTAGTGGTGGTGGTGG+TGG | 0.296732 | tig0022011:-66905 | Msa1396240:CDS |
| TTAAAATATCTTGATCAGTT+TGG | 0.301551 | tig0022011:-67211 | Msa1396240:CDS |
| CGCAGGGAGCAGGTGGATTC+GGG | 0.310473 | tig0022011:+67146 | None:intergenic |
| TAAAATATCTTGATCAGTTT+GGG | 0.320444 | tig0022011:-67210 | Msa1396240:CDS |
| GGTGGTGCTGGTGGTGGTGC+TGG | 0.323818 | tig0022011:+67349 | None:intergenic |
| AAGACTAAAGTTCATTTATC+CGG | 0.366127 | tig0022011:-67187 | Msa1396240:CDS |
| GGGAATGATGATGGTGGTGG+TGG | 0.371848 | tig0022011:-66884 | Msa1396240:CDS |
| GTAGTAGTGGTGGTGGTGGT+GGG | 0.387217 | tig0022011:-66904 | Msa1396240:CDS |
| GGTGGTGGTGGGAATGATGA+TGG | 0.406347 | tig0022011:-66893 | Msa1396240:CDS |
| GGTGGTGGGAACGGTGGTGC+AGG | 0.426076 | tig0022011:-66869 | Msa1396240:CDS |
| CGGCTTGGTGGTGCTGGTGG+TGG | 0.428913 | tig0022011:+67343 | None:intergenic |
| CTGCGCCTGTCCTTTAAAAC+AGG | 0.429736 | tig0022011:-67128 | Msa1396240:CDS |
| GAATTTACTTGAGGGAAGTA+AGG | 0.437407 | tig0022011:-67006 | Msa1396240:CDS |
| GTGGGTAGTAGTGGTGGTGG+TGG | 0.439500 | tig0022011:-66908 | Msa1396240:CDS |
| TCGTAACGGCTTGGTGGTGC+TGG | 0.441836 | tig0022011:+67337 | None:intergenic |
| GATGATGGTGGTGGTGGGAA+CGG | 0.443261 | tig0022011:-66878 | Msa1396240:CDS |
| TTCCTTATGAGAAGAAGAAA+AGG | 0.447506 | tig0022011:-66958 | Msa1396240:CDS |
| AAAGGACAGGCGCAGGGAGC+AGG | 0.450570 | tig0022011:+67136 | None:intergenic |
| GCTCCTGCTCCCTCAGAAGA+TGG | 0.450847 | tig0022011:+67454 | None:intergenic |
| TGCAGTGACGGTTGCAGCTG+TGG | 0.462036 | tig0022011:-66927 | Msa1396240:CDS |
| CCCTCCGGTTGTACGATAAC+CGG | 0.466649 | tig0022011:+67379 | None:intergenic |
| TCCTCCGGTTATCGTACAAC+CGG | 0.478970 | tig0022011:-67383 | Msa1396240:CDS |
| CTGTCCTTTAAAACAGGCAT+GGG | 0.484055 | tig0022011:-67122 | Msa1396240:CDS |
| GACAACAACTTCTCCTCCTC+CGG | 0.503287 | tig0022011:-67398 | Msa1396240:CDS |
| GATAACACTGTTGGTGGTAG+TGG | 0.508316 | tig0022011:-66845 | Msa1396240:CDS |
| GGTGGGAATGATGATGGTGG+TGG | 0.513498 | tig0022011:-66887 | Msa1396240:CDS |
| GGAATGATGATGGTGGTGGT+GGG | 0.518684 | tig0022011:-66883 | Msa1396240:CDS |
| ACAGCTGCAACCGTCACTGC+AGG | 0.519530 | tig0022011:+66929 | None:intergenic |
| CTGCATCGTACAAGTGTCAA+TGG | 0.520507 | tig0022011:+67256 | None:intergenic |
| AAATTACTATACTGTGGTAG+TGG | 0.528676 | tig0022011:+66784 | None:intergenic |
| AGACTAAAGTTCATTTATCC+GGG | 0.529885 | tig0022011:-67186 | Msa1396240:CDS |
| AATTTACTTGAGGGAAGTAA+GGG | 0.533096 | tig0022011:-67005 | Msa1396240:CDS |
| AGCTGTGAGAATTTACTTGA+GGG | 0.533450 | tig0022011:-67014 | Msa1396240:CDS |
| GAGGGAAGTAAGGGAAGGAC+AGG | 0.534869 | tig0022011:-66996 | Msa1396240:CDS |
| CGTCCTGAGTCTAATCCGTT+CGG | 0.540988 | tig0022011:-67043 | Msa1396240:CDS |
| GATCCATCTTCTGAGGGAGC+AGG | 0.541891 | tig0022011:-67457 | Msa1396240:CDS |
| GGATTCGGGTGTCCAAAATA+CGG | 0.542823 | tig0022011:+67160 | None:intergenic |
| GCTGTGGGTAGTAGTGGTGG+TGG | 0.543930 | tig0022011:-66911 | Msa1396240:CDS |
| TGTGATTCGTAACGGCTTGG+TGG | 0.546264 | tig0022011:+67331 | None:intergenic |
| CCTGTCCTTTAAAACAGGCA+TGG | 0.549042 | tig0022011:-67123 | Msa1396240:CDS |
| GGACAGGCGCAGGGAGCAGG+TGG | 0.553440 | tig0022011:+67139 | None:intergenic |
| GGGAGTTTGGACGCGTTGAT+CGG | 0.555275 | tig0022011:-67100 | Msa1396240:CDS |
| GATGGTGGTGGTGGGAACGG+TGG | 0.555955 | tig0022011:-66875 | Msa1396240:CDS |
| GACGATGGAAGTTGTTCTGA+GGG | 0.557122 | tig0022011:+67430 | None:intergenic |
| CATCATGGATCCATCTTCTG+AGG | 0.558178 | tig0022011:-67464 | None:intergenic |
| AGAGCGGCCTACGAAGAAAA+CGG | 0.561578 | tig0022011:-67070 | Msa1396240:CDS |
| GCAGCTGTGGGTAGTAGTGG+TGG | 0.564693 | tig0022011:-66914 | Msa1396240:CDS |
| AAGCTGTGAGAATTTACTTG+AGG | 0.565778 | tig0022011:-67015 | Msa1396240:CDS |
| CGATGGAAGTTGTTCTGAGG+GGG | 0.569511 | tig0022011:+67432 | None:intergenic |
| AACACTGTTGGTGGTAGTGG+TGG | 0.576574 | tig0022011:-66842 | Msa1396240:CDS |
| TAACGGCTTGGTGGTGCTGG+TGG | 0.580690 | tig0022011:+67340 | None:intergenic |
| AAGGAAGAGACCTGCAGTGA+CGG | 0.585642 | tig0022011:-66939 | Msa1396240:CDS |
| GGTGGTGGGAATGATGATGG+TGG | 0.586155 | tig0022011:-66890 | Msa1396240:CDS |
| CTCACAGCTTTAGCACCGAA+CGG | 0.587078 | tig0022011:+67028 | None:intergenic |
| GTTGCAGCTGTGGGTAGTAG+TGG | 0.598053 | tig0022011:-66917 | Msa1396240:CDS |
| TGACGATGGAAGTTGTTCTG+AGG | 0.599930 | tig0022011:+67429 | None:intergenic |
| ATCATGGATCCATCTTCTGA+GGG | 0.607629 | tig0022011:-67463 | Msa1396240:CDS |
| GAAGGACAGGCTAAAGCTAG+AGG | 0.609790 | tig0022011:-66983 | Msa1396240:CDS |
| TTACTATACTGTGGTAGTGG+TGG | 0.610777 | tig0022011:+66787 | None:intergenic |
| TTGACACTTGTACGATGCAG+TGG | 0.614043 | tig0022011:-67253 | Msa1396240:CDS |
| TACTTGAGGGAAGTAAGGGA+AGG | 0.617339 | tig0022011:-67001 | Msa1396240:CDS |
| GCAGTGACGGTTGCAGCTGT+GGG | 0.623308 | tig0022011:-66926 | Msa1396240:CDS |
| GCACCGAACGGATTAGACTC+AGG | 0.627378 | tig0022011:+67040 | None:intergenic |
| TCCGGTTATCGTACAACCGG+AGG | 0.630981 | tig0022011:-67380 | Msa1396240:CDS |
| GGTTGTACGATAACCGGAGG+AGG | 0.636221 | tig0022011:+67385 | None:intergenic |
| AAGGACAGGCTAAAGCTAGA+GGG | 0.636453 | tig0022011:-66982 | Msa1396240:CDS |
| CCGGTTATCGTACAACCGGA+GGG | 0.641455 | tig0022011:-67379 | Msa1396240:CDS |
| GCAGGTGATAACACTGTTGG+TGG | 0.646662 | tig0022011:-66851 | Msa1396240:CDS |
| GTTGTCGTTGTTGTTGACGA+TGG | 0.651302 | tig0022011:+67415 | None:intergenic |
| TCCGGTTGTACGATAACCGG+AGG | 0.653687 | tig0022011:+67382 | None:intergenic |
| GTGTCCAAAATACGGACACC+CGG | 0.654184 | tig0022011:+67168 | None:intergenic |
| TGTCCTTTAAAACAGGCATG+GGG | 0.656837 | tig0022011:-67121 | Msa1396240:CDS |
| GGTGCTGGTGAAGATCCCTC+CGG | 0.662485 | tig0022011:+67364 | None:intergenic |
| GGTGCAGGTGATAACACTGT+TGG | 0.667255 | tig0022011:-66854 | Msa1396240:CDS |
| ACGATGGAAGTTGTTCTGAG+GGG | 0.667946 | tig0022011:+67431 | None:intergenic |
| AAATTAAAATTACTATACTG+TGG | 0.673822 | tig0022011:+66778 | None:intergenic |
| GTCCTTTAAAACAGGCATGG+GGG | 0.683052 | tig0022011:-67120 | Msa1396240:CDS |
| CGAACGGATTAGACTCAGGA+CGG | 0.701071 | tig0022011:+67044 | None:intergenic |
| GCGGCCTACGAAGAAAACGG+AGG | 0.705208 | tig0022011:-67067 | Msa1396240:CDS |
| CATCGTACAAGTGTCAATGG+TGG | 0.708974 | tig0022011:+67259 | None:intergenic |
| CAAGTGTCAATGGTGGCTTG+TGG | 0.716511 | tig0022011:+67266 | None:intergenic |
| GTTGATCGGAAGACTCAGAG+CGG | 0.812799 | tig0022011:-67086 | Msa1396240:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATATCTTGATCAGTT+TGG | - | tig0022011:67039-67058 | Msa1396240:CDS | 20.0% |
| !! | TAAAATATCTTGATCAGTTT+GGG | - | tig0022011:67040-67059 | Msa1396240:CDS | 20.0% |
| ! | AAGACTAAAGTTCATTTATC+CGG | - | tig0022011:67063-67082 | Msa1396240:CDS | 25.0% |
| AGACTAAAGTTCATTTATCC+GGG | - | tig0022011:67064-67083 | Msa1396240:CDS | 30.0% | |
| AATTTACTTGAGGGAAGTAA+GGG | - | tig0022011:67245-67264 | Msa1396240:CDS | 30.0% | |
| TTCCTTATGAGAAGAAGAAA+AGG | - | tig0022011:67292-67311 | Msa1396240:CDS | 30.0% | |
| ! | TTCCTTTTCTTCTTCTCATA+AGG | + | tig0022011:67297-67316 | None:intergenic | 30.0% |
| ! | GACGTTTTTGTGATTCGTAA+CGG | + | tig0022011:66930-66949 | None:intergenic | 35.0% |
| AAGCTGTGAGAATTTACTTG+AGG | - | tig0022011:67235-67254 | Msa1396240:CDS | 35.0% | |
| AGCTGTGAGAATTTACTTGA+GGG | - | tig0022011:67236-67255 | Msa1396240:CDS | 35.0% | |
| GAATTTACTTGAGGGAAGTA+AGG | - | tig0022011:67244-67263 | Msa1396240:CDS | 35.0% | |
| ! | TTTTGTGATTCGTAACGGCT+TGG | + | tig0022011:66925-66944 | None:intergenic | 40.0% |
| AATCACAAAAACGTCGAGAC+TGG | - | tig0022011:66935-66954 | Msa1396240:CDS | 40.0% | |
| !! | CTGTCCTTTAAAACAGGCAT+GGG | - | tig0022011:67128-67147 | Msa1396240:CDS | 40.0% |
| !! | TGTCCTTTAAAACAGGCATG+GGG | - | tig0022011:67129-67148 | Msa1396240:CDS | 40.0% |
| ! | ACGATGGAAGTTGTTCTGAG+GGG | + | tig0022011:66822-66841 | None:intergenic | 45.0% |
| GACGATGGAAGTTGTTCTGA+GGG | + | tig0022011:66823-66842 | None:intergenic | 45.0% | |
| TGACGATGGAAGTTGTTCTG+AGG | + | tig0022011:66824-66843 | None:intergenic | 45.0% | |
| ! | GTTGTCGTTGTTGTTGACGA+TGG | + | tig0022011:66838-66857 | None:intergenic | 45.0% |
| !!! | ATGGTGGCTTGTGGTTTTGT+AGG | + | tig0022011:66978-66997 | None:intergenic | 45.0% |
| CATCGTACAAGTGTCAATGG+TGG | + | tig0022011:66994-67013 | None:intergenic | 45.0% | |
| CTGCATCGTACAAGTGTCAA+TGG | + | tig0022011:66997-67016 | None:intergenic | 45.0% | |
| TTGACACTTGTACGATGCAG+TGG | - | tig0022011:66997-67016 | Msa1396240:CDS | 45.0% | |
| ! | TTATCCGGGTGTCCGTATTT+TGG | - | tig0022011:67078-67097 | Msa1396240:CDS | 45.0% |
| GGATTCGGGTGTCCAAAATA+CGG | + | tig0022011:67093-67112 | None:intergenic | 45.0% | |
| !!! | TGTTTTAAAGGACAGGCGCA+GGG | + | tig0022011:67123-67142 | None:intergenic | 45.0% |
| !!! | CCATGCCTGTTTTAAAGGAC+AGG | + | tig0022011:67130-67149 | None:intergenic | 45.0% |
| !! | CCTGTCCTTTAAAACAGGCA+TGG | - | tig0022011:67127-67146 | Msa1396240:CDS | 45.0% |
| !! | GTCCTTTAAAACAGGCATGG+GGG | - | tig0022011:67130-67149 | Msa1396240:CDS | 45.0% |
| TACTTGAGGGAAGTAAGGGA+AGG | - | tig0022011:67249-67268 | Msa1396240:CDS | 45.0% | |
| AAGGACAGGCTAAAGCTAGA+GGG | - | tig0022011:67268-67287 | Msa1396240:CDS | 45.0% | |
| !! | GATAACACTGTTGGTGGTAG+TGG | - | tig0022011:67405-67424 | Msa1396240:CDS | 45.0% |
| !! | CGATGGAAGTTGTTCTGAGG+GGG | + | tig0022011:66821-66840 | None:intergenic | 50.0% |
| GACAACAACTTCTCCTCCTC+CGG | - | tig0022011:66852-66871 | Msa1396240:CDS | 50.0% | |
| TCCTCCGGTTATCGTACAAC+CGG | - | tig0022011:66867-66886 | Msa1396240:CDS | 50.0% | |
| ! | TGTGATTCGTAACGGCTTGG+TGG | + | tig0022011:66922-66941 | None:intergenic | 50.0% |
| CAAGTGTCAATGGTGGCTTG+TGG | + | tig0022011:66987-67006 | None:intergenic | 50.0% | |
| GTGTCCAAAATACGGACACC+CGG | + | tig0022011:67085-67104 | None:intergenic | 50.0% | |
| !!! | CTGTTTTAAAGGACAGGCGC+AGG | + | tig0022011:67124-67143 | None:intergenic | 50.0% |
| !! | CTGCGCCTGTCCTTTAAAAC+AGG | - | tig0022011:67122-67141 | Msa1396240:CDS | 50.0% |
| !! | CTCCCCCATGCCTGTTTTAA+AGG | + | tig0022011:67135-67154 | None:intergenic | 50.0% |
| AAAACAGGCATGGGGGAGTT+TGG | - | tig0022011:67137-67156 | Msa1396240:CDS | 50.0% | |
| GTTGATCGGAAGACTCAGAG+CGG | - | tig0022011:67164-67183 | Msa1396240:CDS | 50.0% | |
| AGAGCGGCCTACGAAGAAAA+CGG | - | tig0022011:67180-67199 | Msa1396240:CDS | 50.0% | |
| !! | CGAACGGATTAGACTCAGGA+CGG | + | tig0022011:67209-67228 | None:intergenic | 50.0% |
| CGTCCTGAGTCTAATCCGTT+CGG | - | tig0022011:67207-67226 | Msa1396240:CDS | 50.0% | |
| ! | CTCACAGCTTTAGCACCGAA+CGG | + | tig0022011:67225-67244 | None:intergenic | 50.0% |
| GAAGGACAGGCTAAAGCTAG+AGG | - | tig0022011:67267-67286 | Msa1396240:CDS | 50.0% | |
| AAGGAAGAGACCTGCAGTGA+CGG | - | tig0022011:67311-67330 | Msa1396240:CDS | 50.0% | |
| !! | GGAATGATGATGGTGGTGGT+GGG | - | tig0022011:67367-67386 | Msa1396240:CDS | 50.0% |
| GGTGCAGGTGATAACACTGT+TGG | - | tig0022011:67396-67415 | Msa1396240:CDS | 50.0% | |
| GCAGGTGATAACACTGTTGG+TGG | - | tig0022011:67399-67418 | Msa1396240:CDS | 50.0% | |
| !! | AACACTGTTGGTGGTAGTGG+TGG | - | tig0022011:67408-67427 | Msa1396240:CDS | 50.0% |
| ! | GATCCATCTTCTGAGGGAGC+AGG | - | tig0022011:66793-66812 | Msa1396240:CDS | 55.0% |
| GGTTGTACGATAACCGGAGG+AGG | + | tig0022011:66868-66887 | None:intergenic | 55.0% | |
| TCCGGTTGTACGATAACCGG+AGG | + | tig0022011:66871-66890 | None:intergenic | 55.0% | |
| TCCGGTTATCGTACAACCGG+AGG | - | tig0022011:66870-66889 | Msa1396240:CDS | 55.0% | |
| CCCTCCGGTTGTACGATAAC+CGG | + | tig0022011:66874-66893 | None:intergenic | 55.0% | |
| CCGGTTATCGTACAACCGGA+GGG | - | tig0022011:66871-66890 | Msa1396240:CDS | 55.0% | |
| ! | GGGAGTTTGGACGCGTTGAT+CGG | - | tig0022011:67150-67169 | Msa1396240:CDS | 55.0% |
| ! | ACGGCCTCCGTTTTCTTCGT+AGG | + | tig0022011:67190-67209 | None:intergenic | 55.0% |
| !! | GCACCGAACGGATTAGACTC+AGG | + | tig0022011:67213-67232 | None:intergenic | 55.0% |
| GAGGGAAGTAAGGGAAGGAC+AGG | - | tig0022011:67254-67273 | Msa1396240:CDS | 55.0% | |
| GTTGCAGCTGTGGGTAGTAG+TGG | - | tig0022011:67333-67352 | Msa1396240:CDS | 55.0% | |
| !! | GTAGTAGTGGTGGTGGTGGT+GGG | - | tig0022011:67346-67365 | Msa1396240:CDS | 55.0% |
| !! | GGTGGTGGTGGGAATGATGA+TGG | - | tig0022011:67357-67376 | Msa1396240:CDS | 55.0% |
| !! | GGTGGTGGGAATGATGATGG+TGG | - | tig0022011:67360-67379 | Msa1396240:CDS | 55.0% |
| !! | GGTGGGAATGATGATGGTGG+TGG | - | tig0022011:67363-67382 | Msa1396240:CDS | 55.0% |
| !! | GGGAATGATGATGGTGGTGG+TGG | - | tig0022011:67366-67385 | Msa1396240:CDS | 55.0% |
| !! | GATGATGGTGGTGGTGGGAA+CGG | - | tig0022011:67372-67391 | Msa1396240:CDS | 55.0% |
| GCTCCTGCTCCCTCAGAAGA+TGG | + | tig0022011:66799-66818 | None:intergenic | 60.0% | |
| !! | GGTGCTGGTGAAGATCCCTC+CGG | + | tig0022011:66889-66908 | None:intergenic | 60.0% |
| !! | TAACGGCTTGGTGGTGCTGG+TGG | + | tig0022011:66913-66932 | None:intergenic | 60.0% |
| !! | TCGTAACGGCTTGGTGGTGC+TGG | + | tig0022011:66916-66935 | None:intergenic | 60.0% |
| GCGGCCTACGAAGAAAACGG+AGG | - | tig0022011:67183-67202 | Msa1396240:CDS | 60.0% | |
| ACAGCTGCAACCGTCACTGC+AGG | + | tig0022011:67324-67343 | None:intergenic | 60.0% | |
| TGCAGTGACGGTTGCAGCTG+TGG | - | tig0022011:67323-67342 | Msa1396240:CDS | 60.0% | |
| GCAGTGACGGTTGCAGCTGT+GGG | - | tig0022011:67324-67343 | Msa1396240:CDS | 60.0% | |
| GCAGCTGTGGGTAGTAGTGG+TGG | - | tig0022011:67336-67355 | Msa1396240:CDS | 60.0% | |
| GCTGTGGGTAGTAGTGGTGG+TGG | - | tig0022011:67339-67358 | Msa1396240:CDS | 60.0% | |
| !! | GTGGGTAGTAGTGGTGGTGG+TGG | - | tig0022011:67342-67361 | Msa1396240:CDS | 60.0% |
| !! | GGTAGTAGTGGTGGTGGTGG+TGG | - | tig0022011:67345-67364 | Msa1396240:CDS | 60.0% |
| ! | CGCAGGGAGCAGGTGGATTC+GGG | + | tig0022011:67107-67126 | None:intergenic | 65.0% |
| ! | GCGCAGGGAGCAGGTGGATT+CGG | + | tig0022011:67108-67127 | None:intergenic | 65.0% |
| AAAGGACAGGCGCAGGGAGC+AGG | + | tig0022011:67117-67136 | None:intergenic | 65.0% | |
| !! | GATGGTGGTGGTGGGAACGG+TGG | - | tig0022011:67375-67394 | Msa1396240:CDS | 65.0% |
| !! | GGTGGTGCTGGTGGTGGTGC+TGG | + | tig0022011:66904-66923 | None:intergenic | 70.0% |
| !! | CGGCTTGGTGGTGCTGGTGG+TGG | + | tig0022011:66910-66929 | None:intergenic | 70.0% |
| !! | GGTGGTGGGAACGGTGGTGC+AGG | - | tig0022011:67381-67400 | Msa1396240:CDS | 70.0% |
| GGACAGGCGCAGGGAGCAGG+TGG | + | tig0022011:67114-67133 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022011 | gene | 66790 | 67482 | 66790 | ID=Msa1396240;Name=Msa1396240 |
| tig0022011 | mRNA | 66790 | 67482 | 66790 | ID=Msa1396240-mRNA-1;Parent=Msa1396240;Name=Msa1396240-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|230 |
| tig0022011 | exon | 66790 | 67482 | 66790 | ID=Msa1396240-mRNA-1:exon:15405;Parent=Msa1396240-mRNA-1 |
| tig0022011 | CDS | 66790 | 67482 | 66790 | ID=Msa1396240-mRNA-1:cds;Parent=Msa1396240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
