Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437620 | XP_003599342.1 | 93.478 | 230 | 8 | 2 | 1 | 230 | 1 | 223 | 6.38e-153 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437620 | sp|Q9LMK2|LSH6_ARATH | 79.878 | 164 | 32 | 1 | 41 | 204 | 25 | 187 | 3.02e-94 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437620 | G7IWX7 | 93.478 | 230 | 8 | 2 | 1 | 230 | 1 | 223 | 3.05e-153 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025160 | Msa0437620 | 0.831187 | 1.924374e-55 | -8.615850e-47 |
| Msa0033220 | Msa0437620 | 0.802187 | 6.318750e-49 | -8.615850e-47 |
| Msa0072520 | Msa0437620 | 0.819691 | 1.017044e-52 | -8.615850e-47 |
| Msa0365210 | Msa0437620 | 0.816566 | 5.175900e-52 | -8.615850e-47 |
| Msa0384870 | Msa0437620 | 0.818855 | 1.576067e-52 | -8.615850e-47 |
| Msa0435210 | Msa0437620 | 0.810397 | 1.176644e-50 | -8.615850e-47 |
| Msa0437620 | Msa0457570 | 0.817107 | 3.913796e-52 | -8.615850e-47 |
| Msa0437620 | Msa0479320 | 0.822033 | 2.941738e-53 | -8.615850e-47 |
| Msa0437620 | Msa0550050 | 0.813059 | 3.100066e-51 | -8.615850e-47 |
| Msa0437620 | Msa0570010 | 0.809066 | 2.273852e-50 | -8.615850e-47 |
| Msa0437620 | Msa0619710 | 0.803054 | 4.185293e-49 | -8.615850e-47 |
| Msa0437620 | Msa0620900 | 0.815509 | 8.912307e-52 | -8.615850e-47 |
| Msa0437620 | Msa0657710 | 0.801672 | 8.063620e-49 | -8.615850e-47 |
| Msa0437620 | Msa0706150 | 0.816355 | 5.770706e-52 | -8.615850e-47 |
| Msa0437620 | Msa0795750 | 0.809909 | 1.498877e-50 | -8.615850e-47 |
| Msa0437620 | Msa1021590 | 0.805166 | 1.522341e-49 | -8.615850e-47 |
| Msa0437620 | Msa1040150 | 0.839001 | 2.057385e-57 | -8.615850e-47 |
| Msa0437620 | Msa1078820 | 0.806308 | 8.760448e-50 | -8.615850e-47 |
| Msa0437620 | Msa1105640 | 0.815029 | 1.139397e-51 | -8.615850e-47 |
| Msa0437620 | Msa1123970 | 0.815698 | 8.088904e-52 | -8.615850e-47 |
| Msa0437620 | Msa1128130 | 0.811283 | 7.566733e-51 | -8.615850e-47 |
| Msa0437620 | Msa1154320 | 0.822784 | 1.968523e-53 | -8.615850e-47 |
| Msa0437620 | Msa1169650 | 0.813946 | 1.978154e-51 | -8.615850e-47 |
| Msa0437620 | Msa1191500 | 0.809648 | 1.705567e-50 | -8.615850e-47 |
| Msa0437620 | Msa1227830 | 0.808070 | 3.709410e-50 | -8.615850e-47 |
| Msa0437620 | Msa1283960 | 0.821831 | 3.275518e-53 | -8.615850e-47 |
| Msa0437620 | Msa1326680 | 0.801486 | 8.800267e-49 | -8.615850e-47 |
| Msa0437620 | Msa1384460 | 0.814010 | 1.915498e-51 | -8.615850e-47 |
| Msa0437620 | Msa1396240 | 0.994725 | 1.158617e-209 | -8.615850e-47 |
| Msa0437620 | Msa1409410 | 0.804369 | 2.232627e-49 | -8.615850e-47 |
| Msa0437620 | Msa1410160 | 0.802536 | 5.353992e-49 | -8.615850e-47 |
| Msa0437620 | Msa1417370 | 0.827470 | 1.537359e-54 | -8.615850e-47 |
| Msa0262750 | Msa0437620 | 0.829324 | 5.485171e-55 | -8.615850e-47 |
| Msa0300470 | Msa0437620 | 0.830800 | 2.394381e-55 | -8.615850e-47 |
| Msa0337970 | Msa0437620 | 0.833732 | 4.504903e-56 | -8.615850e-47 |
| Msa0342840 | Msa0437620 | 0.823009 | 1.744142e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437620 | MtrunA17_Chr3g0105921 | 93.478 | 230 | 8 | 2 | 1 | 230 | 1 | 223 | 5.87e-157 | 434 |
| Msa0437620 | MtrunA17_Chr5g0431211 | 79.412 | 170 | 26 | 2 | 32 | 194 | 24 | 191 | 1.55e-93 | 273 |
| Msa0437620 | MtrunA17_Chr4g0051251 | 80.597 | 134 | 26 | 0 | 44 | 177 | 43 | 176 | 2.39e-80 | 240 |
| Msa0437620 | MtrunA17_Chr1g0167411 | 80.800 | 125 | 24 | 0 | 47 | 171 | 65 | 189 | 3.11e-78 | 234 |
| Msa0437620 | MtrunA17_Chr1g0187671 | 71.341 | 164 | 43 | 1 | 18 | 177 | 20 | 183 | 1.45e-75 | 227 |
| Msa0437620 | MtrunA17_Chr2g0283861 | 64.286 | 168 | 58 | 1 | 15 | 180 | 1 | 168 | 7.54e-74 | 222 |
| Msa0437620 | MtrunA17_Chr2g0315791 | 74.453 | 137 | 35 | 0 | 44 | 180 | 30 | 166 | 3.05e-73 | 220 |
| Msa0437620 | MtrunA17_Chr7g0261381 | 80.147 | 136 | 27 | 0 | 42 | 177 | 59 | 194 | 4.97e-73 | 221 |
| Msa0437620 | MtrunA17_Chr2g0325831 | 72.263 | 137 | 38 | 0 | 34 | 170 | 10 | 146 | 7.87e-73 | 219 |
| Msa0437620 | MtrunA17_Chr4g0041141 | 67.857 | 140 | 45 | 0 | 31 | 170 | 13 | 152 | 3.33e-72 | 217 |
| Msa0437620 | MtrunA17_Chr1g0183761 | 81.679 | 131 | 24 | 0 | 47 | 177 | 45 | 175 | 1.46e-71 | 217 |
| Msa0437620 | MtrunA17_Chr7g0274631 | 67.123 | 146 | 42 | 4 | 46 | 188 | 26 | 168 | 1.78e-68 | 207 |
| Msa0437620 | MtrunA17_Chr1g0190231 | 78.400 | 125 | 27 | 0 | 47 | 171 | 40 | 164 | 1.91e-66 | 203 |
| Msa0437620 | MtrunA17_Chr8g0379061 | 72.441 | 127 | 35 | 0 | 44 | 170 | 82 | 208 | 1.14e-57 | 182 |
| Msa0437620 | MtrunA17_Chr1g0211641 | 75.000 | 40 | 10 | 0 | 46 | 85 | 70 | 109 | 1.70e-19 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0437620 | AT1G07090.1 | 79.878 | 164 | 32 | 1 | 41 | 204 | 25 | 187 | 3.07e-95 | 277 |
| Msa0437620 | AT5G58500.1 | 76.433 | 157 | 34 | 2 | 45 | 200 | 17 | 171 | 7.91e-86 | 253 |
| Msa0437620 | AT2G42610.1 | 67.081 | 161 | 45 | 1 | 36 | 196 | 14 | 166 | 7.50e-73 | 219 |
| Msa0437620 | AT2G42610.2 | 67.081 | 161 | 45 | 1 | 36 | 196 | 14 | 166 | 7.50e-73 | 219 |
| Msa0437620 | AT2G31160.1 | 80.303 | 132 | 26 | 0 | 47 | 178 | 54 | 185 | 1.10e-72 | 221 |
| Msa0437620 | AT3G23290.2 | 83.333 | 126 | 21 | 0 | 46 | 171 | 47 | 172 | 6.38e-70 | 213 |
| Msa0437620 | AT5G28490.1 | 72.917 | 144 | 38 | 1 | 33 | 176 | 12 | 154 | 3.04e-68 | 208 |
| Msa0437620 | AT3G04510.1 | 74.615 | 130 | 33 | 0 | 47 | 176 | 33 | 162 | 4.00e-66 | 203 |
| Msa0437620 | AT1G78815.1 | 68.000 | 125 | 40 | 0 | 46 | 170 | 39 | 163 | 8.71e-66 | 202 |
| Msa0437620 | AT4G18610.1 | 69.841 | 126 | 37 | 1 | 46 | 170 | 36 | 161 | 4.29e-65 | 200 |
| Msa0437620 | AT1G16910.1 | 57.059 | 170 | 62 | 3 | 19 | 188 | 2 | 160 | 5.39e-64 | 196 |
Find 84 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTATCCGGGTGTCCGTATTT+TGG | 0.255749 | 3_3:-1528955 | Msa0437620:CDS |
| GCGCAGGGAGCAGGTGGATT+CGG | 0.274168 | 3_3:+1528928 | None:intergenic |
| GGTAGTAGTGGTGGTGGTGG+TGG | 0.296732 | 3_3:-1528688 | Msa0437620:CDS |
| TTAAAATATCTTGATCAGTT+TGG | 0.301551 | 3_3:-1528994 | Msa0437620:CDS |
| CGCAGGGAGCAGGTGGATTC+GGG | 0.310473 | 3_3:+1528929 | None:intergenic |
| TAAAATATCTTGATCAGTTT+GGG | 0.320444 | 3_3:-1528993 | Msa0437620:CDS |
| GGTGGTGCTGGTGGTGGTGC+TGG | 0.323818 | 3_3:+1529132 | None:intergenic |
| AAGACTAAAGTTCATTTATC+CGG | 0.366127 | 3_3:-1528970 | Msa0437620:CDS |
| GGGAATGATGATGGTGGTGG+TGG | 0.371848 | 3_3:-1528667 | Msa0437620:CDS |
| GTAGTAGTGGTGGTGGTGGT+GGG | 0.387217 | 3_3:-1528687 | Msa0437620:CDS |
| GGTGGTGGTGGGAATGATGA+TGG | 0.406347 | 3_3:-1528676 | Msa0437620:CDS |
| GGTGGTGGGAACGGTGGTGC+AGG | 0.426076 | 3_3:-1528652 | Msa0437620:CDS |
| CGGCTTGGTGGTGCTGGTGG+TGG | 0.428913 | 3_3:+1529126 | None:intergenic |
| CTGCGCCTGTCCTTTAAAAC+AGG | 0.429736 | 3_3:-1528911 | Msa0437620:CDS |
| GAATTTACTTGAGGGAAGTA+AGG | 0.437407 | 3_3:-1528789 | Msa0437620:CDS |
| GTGGGTAGTAGTGGTGGTGG+TGG | 0.439500 | 3_3:-1528691 | Msa0437620:CDS |
| TCGTAACGGCTTGGTGGTGC+TGG | 0.441836 | 3_3:+1529120 | None:intergenic |
| GATGATGGTGGTGGTGGGAA+CGG | 0.443261 | 3_3:-1528661 | Msa0437620:CDS |
| TTCCTTATGAGAAGAAGAAA+AGG | 0.447506 | 3_3:-1528741 | Msa0437620:CDS |
| AAAGGACAGGCGCAGGGAGC+AGG | 0.450570 | 3_3:+1528919 | None:intergenic |
| GCTCCTGCTCCCTCAGAAGA+TGG | 0.450847 | 3_3:+1529237 | None:intergenic |
| TGCAGTGACGGTTGCAGCTG+TGG | 0.462036 | 3_3:-1528710 | Msa0437620:CDS |
| CCCTCCGGTTGTACGATAAC+CGG | 0.466649 | 3_3:+1529162 | None:intergenic |
| TCCTCCGGTTATCGTACAAC+CGG | 0.478970 | 3_3:-1529166 | Msa0437620:CDS |
| CTGTCCTTTAAAACAGGCAT+GGG | 0.484055 | 3_3:-1528905 | Msa0437620:CDS |
| GACAACAACTTCTCCTCCTC+CGG | 0.503287 | 3_3:-1529181 | Msa0437620:CDS |
| GATAACACTGTTGGTGGTAG+TGG | 0.508316 | 3_3:-1528628 | Msa0437620:CDS |
| GGTGGGAATGATGATGGTGG+TGG | 0.513498 | 3_3:-1528670 | Msa0437620:CDS |
| GGAATGATGATGGTGGTGGT+GGG | 0.518684 | 3_3:-1528666 | Msa0437620:CDS |
| ACAGCTGCAACCGTCACTGC+AGG | 0.519530 | 3_3:+1528712 | None:intergenic |
| CTGCATCGTACAAGTGTCAA+TGG | 0.520507 | 3_3:+1529039 | None:intergenic |
| AAATTACTATACTGTGGTAG+TGG | 0.528676 | 3_3:+1528567 | None:intergenic |
| AGACTAAAGTTCATTTATCC+GGG | 0.529885 | 3_3:-1528969 | Msa0437620:CDS |
| AATTTACTTGAGGGAAGTAA+GGG | 0.533096 | 3_3:-1528788 | Msa0437620:CDS |
| AGCTGTGAGAATTTACTTGA+GGG | 0.533450 | 3_3:-1528797 | Msa0437620:CDS |
| GAGGGAAGTAAGGGAAGGAC+AGG | 0.534869 | 3_3:-1528779 | Msa0437620:CDS |
| CGTCCTGAGTCTAATCCGTT+CGG | 0.540988 | 3_3:-1528826 | Msa0437620:CDS |
| GATCCATCTTCTGAGGGAGC+AGG | 0.541891 | 3_3:-1529240 | Msa0437620:CDS |
| GGATTCGGGTGTCCAAAATA+CGG | 0.542823 | 3_3:+1528943 | None:intergenic |
| GCTGTGGGTAGTAGTGGTGG+TGG | 0.543930 | 3_3:-1528694 | Msa0437620:CDS |
| TGTGATTCGTAACGGCTTGG+TGG | 0.546264 | 3_3:+1529114 | None:intergenic |
| CCTGTCCTTTAAAACAGGCA+TGG | 0.549042 | 3_3:-1528906 | Msa0437620:CDS |
| GGACAGGCGCAGGGAGCAGG+TGG | 0.553440 | 3_3:+1528922 | None:intergenic |
| GGGAGTTTGGACGCGTTGAT+CGG | 0.555275 | 3_3:-1528883 | Msa0437620:CDS |
| GATGGTGGTGGTGGGAACGG+TGG | 0.555955 | 3_3:-1528658 | Msa0437620:CDS |
| GACGATGGAAGTTGTTCTGA+GGG | 0.557122 | 3_3:+1529213 | None:intergenic |
| CATCATGGATCCATCTTCTG+AGG | 0.558178 | 3_3:-1529247 | None:intergenic |
| AGAGCGGCCTACGAAGAAAA+CGG | 0.561578 | 3_3:-1528853 | Msa0437620:CDS |
| GCAGCTGTGGGTAGTAGTGG+TGG | 0.564693 | 3_3:-1528697 | Msa0437620:CDS |
| AAGCTGTGAGAATTTACTTG+AGG | 0.565778 | 3_3:-1528798 | Msa0437620:CDS |
| CGATGGAAGTTGTTCTGAGG+GGG | 0.569511 | 3_3:+1529215 | None:intergenic |
| AACACTGTTGGTGGTAGTGG+TGG | 0.576574 | 3_3:-1528625 | Msa0437620:CDS |
| TAACGGCTTGGTGGTGCTGG+TGG | 0.580690 | 3_3:+1529123 | None:intergenic |
| AAGGAAGAGACCTGCAGTGA+CGG | 0.585642 | 3_3:-1528722 | Msa0437620:CDS |
| GGTGGTGGGAATGATGATGG+TGG | 0.586155 | 3_3:-1528673 | Msa0437620:CDS |
| CTCACAGCTTTAGCACCGAA+CGG | 0.587078 | 3_3:+1528811 | None:intergenic |
| GTTGCAGCTGTGGGTAGTAG+TGG | 0.598053 | 3_3:-1528700 | Msa0437620:CDS |
| TGACGATGGAAGTTGTTCTG+AGG | 0.599930 | 3_3:+1529212 | None:intergenic |
| ATCATGGATCCATCTTCTGA+GGG | 0.607629 | 3_3:-1529246 | Msa0437620:CDS |
| GAAGGACAGGCTAAAGCTAG+AGG | 0.609790 | 3_3:-1528766 | Msa0437620:CDS |
| TTACTATACTGTGGTAGTGG+TGG | 0.610777 | 3_3:+1528570 | None:intergenic |
| TTGACACTTGTACGATGCAG+TGG | 0.614043 | 3_3:-1529036 | Msa0437620:CDS |
| TACTTGAGGGAAGTAAGGGA+AGG | 0.617339 | 3_3:-1528784 | Msa0437620:CDS |
| GCAGTGACGGTTGCAGCTGT+GGG | 0.623308 | 3_3:-1528709 | Msa0437620:CDS |
| GCACCGAACGGATTAGACTC+AGG | 0.627378 | 3_3:+1528823 | None:intergenic |
| TCCGGTTATCGTACAACCGG+AGG | 0.630981 | 3_3:-1529163 | Msa0437620:CDS |
| GGTTGTACGATAACCGGAGG+AGG | 0.636221 | 3_3:+1529168 | None:intergenic |
| AAGGACAGGCTAAAGCTAGA+GGG | 0.636453 | 3_3:-1528765 | Msa0437620:CDS |
| CCGGTTATCGTACAACCGGA+GGG | 0.641455 | 3_3:-1529162 | Msa0437620:CDS |
| GCAGGTGATAACACTGTTGG+TGG | 0.646662 | 3_3:-1528634 | Msa0437620:CDS |
| GTTGTCGTTGTTGTTGACGA+TGG | 0.651302 | 3_3:+1529198 | None:intergenic |
| TCCGGTTGTACGATAACCGG+AGG | 0.653687 | 3_3:+1529165 | None:intergenic |
| GTGTCCAAAATACGGACACC+CGG | 0.654184 | 3_3:+1528951 | None:intergenic |
| TGTCCTTTAAAACAGGCATG+GGG | 0.656837 | 3_3:-1528904 | Msa0437620:CDS |
| GGTGCTGGTGAAGATCCCTC+CGG | 0.662485 | 3_3:+1529147 | None:intergenic |
| GGTGCAGGTGATAACACTGT+TGG | 0.667255 | 3_3:-1528637 | Msa0437620:CDS |
| ACGATGGAAGTTGTTCTGAG+GGG | 0.667946 | 3_3:+1529214 | None:intergenic |
| AAATTAAAATTACTATACTG+TGG | 0.673822 | 3_3:+1528561 | None:intergenic |
| GTCCTTTAAAACAGGCATGG+GGG | 0.683052 | 3_3:-1528903 | Msa0437620:CDS |
| CGAACGGATTAGACTCAGGA+CGG | 0.701071 | 3_3:+1528827 | None:intergenic |
| GCGGCCTACGAAGAAAACGG+AGG | 0.705208 | 3_3:-1528850 | Msa0437620:CDS |
| CATCGTACAAGTGTCAATGG+TGG | 0.708974 | 3_3:+1529042 | None:intergenic |
| CAAGTGTCAATGGTGGCTTG+TGG | 0.716511 | 3_3:+1529049 | None:intergenic |
| GTTGATCGGAAGACTCAGAG+CGG | 0.812799 | 3_3:-1528869 | Msa0437620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAATATCTTGATCAGTT+TGG | - | chr3_3:1528822-1528841 | Msa0437620:CDS | 20.0% |
| !! | TAAAATATCTTGATCAGTTT+GGG | - | chr3_3:1528823-1528842 | Msa0437620:CDS | 20.0% |
| ! | AAGACTAAAGTTCATTTATC+CGG | - | chr3_3:1528846-1528865 | Msa0437620:CDS | 25.0% |
| AGACTAAAGTTCATTTATCC+GGG | - | chr3_3:1528847-1528866 | Msa0437620:CDS | 30.0% | |
| AATTTACTTGAGGGAAGTAA+GGG | - | chr3_3:1529028-1529047 | Msa0437620:CDS | 30.0% | |
| TTCCTTATGAGAAGAAGAAA+AGG | - | chr3_3:1529075-1529094 | Msa0437620:CDS | 30.0% | |
| ! | TTCCTTTTCTTCTTCTCATA+AGG | + | chr3_3:1529080-1529099 | None:intergenic | 30.0% |
| ! | GACGTTTTTGTGATTCGTAA+CGG | + | chr3_3:1528713-1528732 | None:intergenic | 35.0% |
| AAGCTGTGAGAATTTACTTG+AGG | - | chr3_3:1529018-1529037 | Msa0437620:CDS | 35.0% | |
| AGCTGTGAGAATTTACTTGA+GGG | - | chr3_3:1529019-1529038 | Msa0437620:CDS | 35.0% | |
| GAATTTACTTGAGGGAAGTA+AGG | - | chr3_3:1529027-1529046 | Msa0437620:CDS | 35.0% | |
| ! | TTTTGTGATTCGTAACGGCT+TGG | + | chr3_3:1528708-1528727 | None:intergenic | 40.0% |
| AATCACAAAAACGTCGAGAC+TGG | - | chr3_3:1528718-1528737 | Msa0437620:CDS | 40.0% | |
| !! | CTGTCCTTTAAAACAGGCAT+GGG | - | chr3_3:1528911-1528930 | Msa0437620:CDS | 40.0% |
| !! | TGTCCTTTAAAACAGGCATG+GGG | - | chr3_3:1528912-1528931 | Msa0437620:CDS | 40.0% |
| ! | ACGATGGAAGTTGTTCTGAG+GGG | + | chr3_3:1528605-1528624 | None:intergenic | 45.0% |
| GACGATGGAAGTTGTTCTGA+GGG | + | chr3_3:1528606-1528625 | None:intergenic | 45.0% | |
| TGACGATGGAAGTTGTTCTG+AGG | + | chr3_3:1528607-1528626 | None:intergenic | 45.0% | |
| ! | GTTGTCGTTGTTGTTGACGA+TGG | + | chr3_3:1528621-1528640 | None:intergenic | 45.0% |
| !!! | ATGGTGGCTTGTGGTTTTGT+AGG | + | chr3_3:1528761-1528780 | None:intergenic | 45.0% |
| CATCGTACAAGTGTCAATGG+TGG | + | chr3_3:1528777-1528796 | None:intergenic | 45.0% | |
| CTGCATCGTACAAGTGTCAA+TGG | + | chr3_3:1528780-1528799 | None:intergenic | 45.0% | |
| TTGACACTTGTACGATGCAG+TGG | - | chr3_3:1528780-1528799 | Msa0437620:CDS | 45.0% | |
| ! | TTATCCGGGTGTCCGTATTT+TGG | - | chr3_3:1528861-1528880 | Msa0437620:CDS | 45.0% |
| GGATTCGGGTGTCCAAAATA+CGG | + | chr3_3:1528876-1528895 | None:intergenic | 45.0% | |
| !!! | TGTTTTAAAGGACAGGCGCA+GGG | + | chr3_3:1528906-1528925 | None:intergenic | 45.0% |
| !!! | CCATGCCTGTTTTAAAGGAC+AGG | + | chr3_3:1528913-1528932 | None:intergenic | 45.0% |
| !! | CCTGTCCTTTAAAACAGGCA+TGG | - | chr3_3:1528910-1528929 | Msa0437620:CDS | 45.0% |
| !! | GTCCTTTAAAACAGGCATGG+GGG | - | chr3_3:1528913-1528932 | Msa0437620:CDS | 45.0% |
| TACTTGAGGGAAGTAAGGGA+AGG | - | chr3_3:1529032-1529051 | Msa0437620:CDS | 45.0% | |
| AAGGACAGGCTAAAGCTAGA+GGG | - | chr3_3:1529051-1529070 | Msa0437620:CDS | 45.0% | |
| !! | GATAACACTGTTGGTGGTAG+TGG | - | chr3_3:1529188-1529207 | Msa0437620:CDS | 45.0% |
| !! | CGATGGAAGTTGTTCTGAGG+GGG | + | chr3_3:1528604-1528623 | None:intergenic | 50.0% |
| GACAACAACTTCTCCTCCTC+CGG | - | chr3_3:1528635-1528654 | Msa0437620:CDS | 50.0% | |
| TCCTCCGGTTATCGTACAAC+CGG | - | chr3_3:1528650-1528669 | Msa0437620:CDS | 50.0% | |
| ! | TGTGATTCGTAACGGCTTGG+TGG | + | chr3_3:1528705-1528724 | None:intergenic | 50.0% |
| CAAGTGTCAATGGTGGCTTG+TGG | + | chr3_3:1528770-1528789 | None:intergenic | 50.0% | |
| GTGTCCAAAATACGGACACC+CGG | + | chr3_3:1528868-1528887 | None:intergenic | 50.0% | |
| !!! | CTGTTTTAAAGGACAGGCGC+AGG | + | chr3_3:1528907-1528926 | None:intergenic | 50.0% |
| !! | CTGCGCCTGTCCTTTAAAAC+AGG | - | chr3_3:1528905-1528924 | Msa0437620:CDS | 50.0% |
| !! | CTCCCCCATGCCTGTTTTAA+AGG | + | chr3_3:1528918-1528937 | None:intergenic | 50.0% |
| AAAACAGGCATGGGGGAGTT+TGG | - | chr3_3:1528920-1528939 | Msa0437620:CDS | 50.0% | |
| GTTGATCGGAAGACTCAGAG+CGG | - | chr3_3:1528947-1528966 | Msa0437620:CDS | 50.0% | |
| AGAGCGGCCTACGAAGAAAA+CGG | - | chr3_3:1528963-1528982 | Msa0437620:CDS | 50.0% | |
| !! | CGAACGGATTAGACTCAGGA+CGG | + | chr3_3:1528992-1529011 | None:intergenic | 50.0% |
| CGTCCTGAGTCTAATCCGTT+CGG | - | chr3_3:1528990-1529009 | Msa0437620:CDS | 50.0% | |
| ! | CTCACAGCTTTAGCACCGAA+CGG | + | chr3_3:1529008-1529027 | None:intergenic | 50.0% |
| GAAGGACAGGCTAAAGCTAG+AGG | - | chr3_3:1529050-1529069 | Msa0437620:CDS | 50.0% | |
| AAGGAAGAGACCTGCAGTGA+CGG | - | chr3_3:1529094-1529113 | Msa0437620:CDS | 50.0% | |
| !! | GGAATGATGATGGTGGTGGT+GGG | - | chr3_3:1529150-1529169 | Msa0437620:CDS | 50.0% |
| GGTGCAGGTGATAACACTGT+TGG | - | chr3_3:1529179-1529198 | Msa0437620:CDS | 50.0% | |
| GCAGGTGATAACACTGTTGG+TGG | - | chr3_3:1529182-1529201 | Msa0437620:CDS | 50.0% | |
| !! | AACACTGTTGGTGGTAGTGG+TGG | - | chr3_3:1529191-1529210 | Msa0437620:CDS | 50.0% |
| ! | GATCCATCTTCTGAGGGAGC+AGG | - | chr3_3:1528576-1528595 | Msa0437620:CDS | 55.0% |
| GGTTGTACGATAACCGGAGG+AGG | + | chr3_3:1528651-1528670 | None:intergenic | 55.0% | |
| TCCGGTTGTACGATAACCGG+AGG | + | chr3_3:1528654-1528673 | None:intergenic | 55.0% | |
| TCCGGTTATCGTACAACCGG+AGG | - | chr3_3:1528653-1528672 | Msa0437620:CDS | 55.0% | |
| CCCTCCGGTTGTACGATAAC+CGG | + | chr3_3:1528657-1528676 | None:intergenic | 55.0% | |
| CCGGTTATCGTACAACCGGA+GGG | - | chr3_3:1528654-1528673 | Msa0437620:CDS | 55.0% | |
| ! | GGGAGTTTGGACGCGTTGAT+CGG | - | chr3_3:1528933-1528952 | Msa0437620:CDS | 55.0% |
| ! | ACGGCCTCCGTTTTCTTCGT+AGG | + | chr3_3:1528973-1528992 | None:intergenic | 55.0% |
| !! | GCACCGAACGGATTAGACTC+AGG | + | chr3_3:1528996-1529015 | None:intergenic | 55.0% |
| GAGGGAAGTAAGGGAAGGAC+AGG | - | chr3_3:1529037-1529056 | Msa0437620:CDS | 55.0% | |
| GTTGCAGCTGTGGGTAGTAG+TGG | - | chr3_3:1529116-1529135 | Msa0437620:CDS | 55.0% | |
| !! | GTAGTAGTGGTGGTGGTGGT+GGG | - | chr3_3:1529129-1529148 | Msa0437620:CDS | 55.0% |
| !! | GGTGGTGGTGGGAATGATGA+TGG | - | chr3_3:1529140-1529159 | Msa0437620:CDS | 55.0% |
| !! | GGTGGTGGGAATGATGATGG+TGG | - | chr3_3:1529143-1529162 | Msa0437620:CDS | 55.0% |
| !! | GGTGGGAATGATGATGGTGG+TGG | - | chr3_3:1529146-1529165 | Msa0437620:CDS | 55.0% |
| !! | GGGAATGATGATGGTGGTGG+TGG | - | chr3_3:1529149-1529168 | Msa0437620:CDS | 55.0% |
| !! | GATGATGGTGGTGGTGGGAA+CGG | - | chr3_3:1529155-1529174 | Msa0437620:CDS | 55.0% |
| GCTCCTGCTCCCTCAGAAGA+TGG | + | chr3_3:1528582-1528601 | None:intergenic | 60.0% | |
| !! | GGTGCTGGTGAAGATCCCTC+CGG | + | chr3_3:1528672-1528691 | None:intergenic | 60.0% |
| !! | TAACGGCTTGGTGGTGCTGG+TGG | + | chr3_3:1528696-1528715 | None:intergenic | 60.0% |
| !! | TCGTAACGGCTTGGTGGTGC+TGG | + | chr3_3:1528699-1528718 | None:intergenic | 60.0% |
| GCGGCCTACGAAGAAAACGG+AGG | - | chr3_3:1528966-1528985 | Msa0437620:CDS | 60.0% | |
| ACAGCTGCAACCGTCACTGC+AGG | + | chr3_3:1529107-1529126 | None:intergenic | 60.0% | |
| TGCAGTGACGGTTGCAGCTG+TGG | - | chr3_3:1529106-1529125 | Msa0437620:CDS | 60.0% | |
| GCAGTGACGGTTGCAGCTGT+GGG | - | chr3_3:1529107-1529126 | Msa0437620:CDS | 60.0% | |
| GCAGCTGTGGGTAGTAGTGG+TGG | - | chr3_3:1529119-1529138 | Msa0437620:CDS | 60.0% | |
| GCTGTGGGTAGTAGTGGTGG+TGG | - | chr3_3:1529122-1529141 | Msa0437620:CDS | 60.0% | |
| !! | GTGGGTAGTAGTGGTGGTGG+TGG | - | chr3_3:1529125-1529144 | Msa0437620:CDS | 60.0% |
| !! | GGTAGTAGTGGTGGTGGTGG+TGG | - | chr3_3:1529128-1529147 | Msa0437620:CDS | 60.0% |
| ! | CGCAGGGAGCAGGTGGATTC+GGG | + | chr3_3:1528890-1528909 | None:intergenic | 65.0% |
| ! | GCGCAGGGAGCAGGTGGATT+CGG | + | chr3_3:1528891-1528910 | None:intergenic | 65.0% |
| AAAGGACAGGCGCAGGGAGC+AGG | + | chr3_3:1528900-1528919 | None:intergenic | 65.0% | |
| !! | GATGGTGGTGGTGGGAACGG+TGG | - | chr3_3:1529158-1529177 | Msa0437620:CDS | 65.0% |
| !! | GGTGGTGCTGGTGGTGGTGC+TGG | + | chr3_3:1528687-1528706 | None:intergenic | 70.0% |
| !! | CGGCTTGGTGGTGCTGGTGG+TGG | + | chr3_3:1528693-1528712 | None:intergenic | 70.0% |
| !! | GGTGGTGGGAACGGTGGTGC+AGG | - | chr3_3:1529164-1529183 | Msa0437620:CDS | 70.0% |
| GGACAGGCGCAGGGAGCAGG+TGG | + | chr3_3:1528897-1528916 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 1528573 | 1529265 | 1528573 | ID=Msa0437620;Name=Msa0437620 |
| chr3_3 | mRNA | 1528573 | 1529265 | 1528573 | ID=Msa0437620-mRNA-1;Parent=Msa0437620;Name=Msa0437620-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|230 |
| chr3_3 | exon | 1528573 | 1529265 | 1528573 | ID=Msa0437620-mRNA-1:exon:156;Parent=Msa0437620-mRNA-1 |
| chr3_3 | CDS | 1528573 | 1529265 | 1528573 | ID=Msa0437620-mRNA-1:cds;Parent=Msa0437620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
