Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234260 | XP_003627289.1 | 95.755 | 212 | 9 | 0 | 1 | 212 | 1 | 212 | 1.32e-143 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234260 | sp|O04011|ABP20_PRUPE | 49.524 | 210 | 103 | 3 | 3 | 211 | 6 | 213 | 1.60e-61 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036430 | Msa1234260 | 0.809143 | 2.188412e-50 | -8.615850e-47 |
| Msa0176470 | Msa1234260 | 0.806748 | 7.074672e-50 | -8.615850e-47 |
| Msa1234260 | Msa1234280 | 0.939848 | 6.364545e-100 | -8.615850e-47 |
| Msa1234260 | Msa1420060 | 0.802611 | 5.167051e-49 | -8.615850e-47 |
| Msa0298240 | Msa1234260 | 0.801818 | 7.523076e-49 | -8.615850e-47 |
| Msa1169990 | Msa1234260 | 0.818151 | 2.276960e-52 | -8.615850e-47 |
| Msa1201110 | Msa1234260 | 0.801817 | 7.527634e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234260 | MtrunA17_Chr8g0344051 | 95.755 | 212 | 9 | 0 | 1 | 212 | 1 | 212 | 1.22e-147 | 409 |
| Msa1234260 | MtrunA17_Chr8g0344021 | 67.136 | 213 | 68 | 2 | 1 | 212 | 1 | 212 | 5.02e-97 | 281 |
| Msa1234260 | MtrunA17_Chr4g0003361 | 62.559 | 211 | 72 | 5 | 3 | 212 | 1 | 205 | 3.76e-84 | 248 |
| Msa1234260 | MtrunA17_Chr8g0343934 | 54.245 | 212 | 94 | 2 | 1 | 212 | 1 | 209 | 1.57e-79 | 236 |
| Msa1234260 | MtrunA17_Chr8g0344031 | 57.277 | 213 | 88 | 3 | 1 | 212 | 1 | 211 | 1.21e-78 | 234 |
| Msa1234260 | MtrunA17_Chr8g0344041 | 54.717 | 212 | 93 | 2 | 1 | 212 | 5 | 213 | 3.42e-78 | 233 |
| Msa1234260 | MtrunA17_Chr8g0343954 | 57.143 | 189 | 79 | 2 | 24 | 212 | 23 | 209 | 8.52e-75 | 224 |
| Msa1234260 | MtrunA17_Chr2g0301611 | 52.830 | 212 | 97 | 3 | 1 | 212 | 1 | 209 | 1.64e-74 | 224 |
| Msa1234260 | MtrunA17_Chr2g0297231 | 54.067 | 209 | 93 | 3 | 1 | 209 | 1 | 206 | 5.90e-73 | 219 |
| Msa1234260 | MtrunA17_Chr2g0297241 | 53.555 | 211 | 95 | 3 | 1 | 211 | 1 | 208 | 2.00e-72 | 218 |
| Msa1234260 | MtrunA17_Chr7g0217811 | 57.143 | 189 | 79 | 1 | 24 | 212 | 23 | 209 | 3.10e-72 | 218 |
| Msa1234260 | MtrunA17_Chr3g0084531 | 52.358 | 212 | 98 | 3 | 1 | 212 | 1 | 209 | 3.38e-71 | 215 |
| Msa1234260 | MtrunA17_Chr2g0313961 | 52.885 | 208 | 96 | 2 | 4 | 211 | 3 | 208 | 8.84e-71 | 214 |
| Msa1234260 | MtrunA17_Chr3g0115141 | 52.558 | 215 | 94 | 5 | 1 | 212 | 1 | 210 | 2.03e-70 | 213 |
| Msa1234260 | MtrunA17_Chr2g0286171 | 52.995 | 217 | 92 | 5 | 1 | 212 | 1 | 212 | 3.53e-70 | 213 |
| Msa1234260 | MtrunA17_Chr8g0343961 | 50.239 | 209 | 102 | 2 | 4 | 212 | 3 | 209 | 1.51e-69 | 211 |
| Msa1234260 | MtrunA17_Chr4g0012651 | 56.085 | 189 | 81 | 1 | 24 | 212 | 23 | 209 | 1.98e-69 | 211 |
| Msa1234260 | MtrunA17_Chr2g0302541 | 55.556 | 189 | 82 | 1 | 24 | 212 | 23 | 209 | 2.63e-69 | 210 |
| Msa1234260 | MtrunA17_Chr5g0411961 | 50.000 | 212 | 103 | 3 | 1 | 212 | 1 | 209 | 7.19e-69 | 209 |
| Msa1234260 | MtrunA17_Chr2g0302171 | 50.943 | 212 | 101 | 3 | 1 | 212 | 1 | 209 | 7.19e-69 | 209 |
| Msa1234260 | MtrunA17_Chr3g0084511 | 51.415 | 212 | 99 | 3 | 1 | 212 | 1 | 208 | 2.16e-68 | 208 |
| Msa1234260 | MtrunA17_Chr3g0084521 | 51.887 | 212 | 98 | 3 | 1 | 212 | 1 | 208 | 2.41e-68 | 208 |
| Msa1234260 | MtrunA17_Chr8g0343921 | 50.242 | 207 | 99 | 3 | 7 | 212 | 4 | 207 | 5.88e-65 | 199 |
| Msa1234260 | MtrunA17_Chr2g0300581 | 46.479 | 213 | 110 | 3 | 1 | 212 | 1 | 210 | 5.19e-64 | 197 |
| Msa1234260 | MtrunA17_Chr2g0300591 | 46.009 | 213 | 111 | 3 | 1 | 212 | 1 | 210 | 3.90e-63 | 195 |
| Msa1234260 | MtrunA17_Chr2g0300561 | 46.948 | 213 | 109 | 3 | 1 | 212 | 1 | 210 | 1.09e-61 | 191 |
| Msa1234260 | MtrunA17_Chr8g0343911 | 48.341 | 211 | 105 | 4 | 3 | 212 | 1 | 208 | 1.81e-61 | 191 |
| Msa1234260 | MtrunA17_Chr3g0084551 | 46.602 | 206 | 101 | 3 | 1 | 206 | 1 | 197 | 2.36e-52 | 168 |
| Msa1234260 | MtrunA17_Chr6g0449751 | 41.989 | 181 | 86 | 5 | 3 | 170 | 1 | 175 | 7.44e-31 | 112 |
| Msa1234260 | MtrunA17_Chr6g0449791 | 41.899 | 179 | 90 | 4 | 3 | 170 | 1 | 176 | 1.01e-30 | 112 |
| Msa1234260 | MtrunA17_Chr7g0271211 | 40.110 | 182 | 104 | 4 | 1 | 178 | 2 | 182 | 1.12e-30 | 112 |
| Msa1234260 | MtrunA17_Chr6g0449731 | 41.989 | 181 | 86 | 5 | 3 | 170 | 1 | 175 | 1.32e-30 | 112 |
| Msa1234260 | MtrunA17_Chr1g0193671 | 41.317 | 167 | 92 | 4 | 7 | 169 | 9 | 173 | 1.50e-30 | 112 |
| Msa1234260 | MtrunA17_Chr2g0292831 | 37.245 | 196 | 113 | 4 | 16 | 208 | 19 | 207 | 1.70e-30 | 111 |
| Msa1234260 | MtrunA17_Chr6g0449761 | 41.989 | 181 | 86 | 5 | 3 | 170 | 1 | 175 | 1.72e-30 | 112 |
| Msa1234260 | MtrunA17_Chr6g0449771 | 41.989 | 181 | 86 | 5 | 3 | 170 | 1 | 175 | 3.39e-30 | 111 |
| Msa1234260 | MtrunA17_Chr3g0084501 | 50.909 | 110 | 51 | 2 | 1 | 110 | 1 | 107 | 5.28e-30 | 107 |
| Msa1234260 | MtrunA17_Chr1g0193421 | 37.113 | 194 | 118 | 3 | 15 | 205 | 20 | 212 | 6.07e-30 | 110 |
| Msa1234260 | MtrunA17_Chr4g0007031 | 40.782 | 179 | 94 | 4 | 1 | 170 | 1 | 176 | 8.97e-30 | 110 |
| Msa1234260 | MtrunA17_Chr5g0419971 | 40.782 | 179 | 94 | 4 | 1 | 170 | 1 | 176 | 8.97e-30 | 110 |
| Msa1234260 | MtrunA17_Chr5g0419981 | 40.782 | 179 | 94 | 4 | 1 | 170 | 1 | 176 | 8.97e-30 | 110 |
| Msa1234260 | MtrunA17_Chr4g0007051 | 40.782 | 179 | 94 | 4 | 1 | 170 | 1 | 176 | 1.05e-29 | 109 |
| Msa1234260 | MtrunA17_Chr4g0007041 | 40.223 | 179 | 95 | 4 | 1 | 170 | 1 | 176 | 1.21e-29 | 109 |
| Msa1234260 | MtrunA17_Chr2g0292901 | 44.000 | 150 | 77 | 3 | 24 | 170 | 28 | 173 | 1.49e-29 | 109 |
| Msa1234260 | MtrunA17_Chr1g0189841 | 39.594 | 197 | 108 | 5 | 1 | 188 | 1 | 195 | 1.94e-29 | 109 |
| Msa1234260 | MtrunA17_Chr2g0285871 | 40.782 | 179 | 94 | 4 | 1 | 170 | 1 | 176 | 2.99e-29 | 108 |
| Msa1234260 | MtrunA17_Chr1g0156131 | 39.521 | 167 | 91 | 3 | 7 | 170 | 10 | 169 | 5.09e-28 | 105 |
| Msa1234260 | MtrunA17_Chr1g0210761 | 31.579 | 209 | 136 | 3 | 4 | 211 | 8 | 210 | 6.31e-28 | 105 |
| Msa1234260 | MtrunA17_Chr8g0335851 | 44.030 | 134 | 72 | 2 | 38 | 170 | 47 | 178 | 1.55e-27 | 104 |
| Msa1234260 | MtrunA17_Chr3g0130241 | 36.313 | 179 | 103 | 3 | 1 | 170 | 65 | 241 | 1.74e-27 | 105 |
| Msa1234260 | MtrunA17_Chr1g0178711 | 33.816 | 207 | 125 | 5 | 11 | 207 | 18 | 222 | 6.41e-27 | 102 |
| Msa1234260 | MtrunA17_Chr5g0414971 | 31.937 | 191 | 125 | 4 | 24 | 210 | 32 | 221 | 2.08e-26 | 101 |
| Msa1234260 | MtrunA17_Chr6g0449781 | 36.946 | 203 | 115 | 4 | 3 | 195 | 1 | 200 | 1.05e-25 | 99.4 |
| Msa1234260 | MtrunA17_Chr2g0292861 | 38.596 | 171 | 97 | 4 | 42 | 208 | 7 | 173 | 1.88e-25 | 97.8 |
| Msa1234260 | MtrunA17_Chr2g0292911 | 44.915 | 118 | 61 | 2 | 42 | 156 | 7 | 123 | 1.06e-23 | 92.0 |
| Msa1234260 | MtrunA17_Chr2g0292841 | 43.609 | 133 | 70 | 3 | 42 | 170 | 7 | 138 | 1.18e-23 | 92.8 |
| Msa1234260 | MtrunA17_Chr2g0321601 | 32.386 | 176 | 101 | 7 | 2 | 173 | 7 | 168 | 2.70e-17 | 77.0 |
| Msa1234260 | MtrunA17_Chr2g0327651 | 38.384 | 99 | 61 | 0 | 46 | 144 | 7 | 105 | 4.64e-17 | 73.9 |
| Msa1234260 | MtrunA17_Chr4g0026191 | 32.919 | 161 | 93 | 5 | 34 | 180 | 28 | 187 | 1.14e-16 | 75.1 |
| Msa1234260 | MtrunA17_Chr4g0026201 | 32.919 | 161 | 93 | 5 | 34 | 180 | 28 | 187 | 1.68e-16 | 74.7 |
| Msa1234260 | MtrunA17_Chr2g0321581 | 35.172 | 145 | 86 | 5 | 34 | 173 | 28 | 169 | 7.13e-16 | 73.2 |
| Msa1234260 | MtrunA17_Chr2g0321591 | 34.483 | 145 | 87 | 5 | 34 | 173 | 28 | 169 | 1.76e-15 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1234260 | AT5G20630.1 | 49.528 | 212 | 104 | 3 | 1 | 211 | 1 | 210 | 3.50e-62 | 193 |
| Msa1234260 | AT1G72610.1 | 49.474 | 190 | 94 | 2 | 24 | 212 | 20 | 208 | 1.71e-56 | 178 |
| Msa1234260 | AT5G39160.3 | 38.636 | 220 | 120 | 6 | 1 | 209 | 1 | 216 | 2.90e-39 | 134 |
| Msa1234260 | AT5G39190.1 | 38.009 | 221 | 124 | 6 | 1 | 209 | 1 | 220 | 4.48e-38 | 132 |
| Msa1234260 | AT5G39130.1 | 38.009 | 221 | 124 | 6 | 1 | 209 | 1 | 220 | 4.67e-38 | 131 |
| Msa1234260 | AT5G39160.1 | 38.009 | 221 | 124 | 6 | 1 | 209 | 1 | 220 | 7.42e-38 | 131 |
| Msa1234260 | AT5G38960.1 | 41.262 | 206 | 101 | 5 | 20 | 209 | 22 | 223 | 1.25e-37 | 130 |
| Msa1234260 | AT3G04200.1 | 37.900 | 219 | 125 | 5 | 1 | 209 | 6 | 223 | 2.71e-37 | 130 |
| Msa1234260 | AT5G26700.1 | 42.328 | 189 | 102 | 5 | 24 | 209 | 26 | 210 | 3.41e-36 | 126 |
| Msa1234260 | AT3G05930.1 | 42.021 | 188 | 106 | 2 | 24 | 208 | 28 | 215 | 5.23e-36 | 126 |
| Msa1234260 | AT1G02335.1 | 38.967 | 213 | 118 | 6 | 6 | 209 | 7 | 216 | 3.69e-35 | 124 |
| Msa1234260 | AT5G39110.1 | 45.395 | 152 | 76 | 3 | 25 | 170 | 30 | 180 | 9.84e-35 | 123 |
| Msa1234260 | AT3G62020.1 | 42.775 | 173 | 88 | 4 | 9 | 175 | 8 | 175 | 7.33e-34 | 120 |
| Msa1234260 | AT3G05950.1 | 46.053 | 152 | 76 | 3 | 24 | 170 | 31 | 181 | 1.38e-33 | 120 |
| Msa1234260 | AT3G04150.1 | 44.079 | 152 | 79 | 3 | 24 | 170 | 31 | 181 | 9.19e-33 | 118 |
| Msa1234260 | AT3G04150.2 | 46.617 | 133 | 66 | 2 | 42 | 170 | 63 | 194 | 1.04e-32 | 118 |
| Msa1234260 | AT5G39120.1 | 40.437 | 183 | 90 | 6 | 1 | 170 | 3 | 179 | 1.15e-32 | 117 |
| Msa1234260 | AT5G39180.1 | 37.755 | 196 | 107 | 4 | 1 | 186 | 5 | 195 | 1.64e-32 | 117 |
| Msa1234260 | AT5G39150.1 | 39.444 | 180 | 94 | 4 | 1 | 170 | 5 | 179 | 5.22e-32 | 116 |
| Msa1234260 | AT3G04190.1 | 44.737 | 152 | 78 | 3 | 24 | 170 | 31 | 181 | 1.56e-31 | 115 |
| Msa1234260 | AT5G38940.1 | 39.583 | 192 | 108 | 4 | 24 | 208 | 31 | 221 | 2.04e-31 | 114 |
| Msa1234260 | AT5G38940.2 | 39.583 | 192 | 108 | 4 | 24 | 208 | 55 | 245 | 3.66e-31 | 114 |
| Msa1234260 | AT4G14630.1 | 45.860 | 157 | 70 | 4 | 24 | 170 | 31 | 182 | 6.12e-31 | 113 |
| Msa1234260 | AT1G18980.1 | 36.893 | 206 | 124 | 4 | 7 | 209 | 17 | 219 | 1.04e-30 | 112 |
| Msa1234260 | AT5G39190.2 | 34.545 | 220 | 111 | 6 | 1 | 209 | 1 | 198 | 1.68e-30 | 111 |
| Msa1234260 | AT5G61750.1 | 38.547 | 179 | 94 | 4 | 1 | 170 | 1 | 172 | 2.33e-30 | 111 |
| Msa1234260 | AT5G39160.2 | 34.545 | 220 | 111 | 6 | 1 | 209 | 1 | 198 | 2.87e-30 | 111 |
| Msa1234260 | AT3G62020.2 | 45.652 | 138 | 69 | 3 | 39 | 175 | 14 | 146 | 5.85e-30 | 110 |
| Msa1234260 | AT5G38910.1 | 37.788 | 217 | 117 | 6 | 4 | 208 | 9 | 219 | 2.45e-29 | 109 |
| Msa1234260 | AT5G38930.1 | 38.542 | 192 | 110 | 4 | 24 | 208 | 31 | 221 | 2.71e-29 | 109 |
| Msa1234260 | AT1G09560.1 | 39.429 | 175 | 101 | 3 | 16 | 186 | 18 | 191 | 8.84e-29 | 107 |
| Msa1234260 | AT3G04180.1 | 36.649 | 191 | 113 | 4 | 25 | 208 | 32 | 221 | 3.59e-28 | 106 |
| Msa1234260 | AT1G74820.1 | 45.522 | 134 | 69 | 3 | 24 | 156 | 41 | 171 | 3.82e-28 | 106 |
| Msa1234260 | AT1G18970.1 | 35.681 | 213 | 128 | 5 | 3 | 209 | 10 | 219 | 4.47e-28 | 105 |
| Msa1234260 | AT3G04170.1 | 42.581 | 155 | 74 | 4 | 24 | 170 | 31 | 178 | 3.03e-27 | 103 |
| Msa1234260 | AT1G10460.1 | 36.000 | 150 | 94 | 2 | 39 | 186 | 42 | 191 | 4.02e-26 | 100 |
| Msa1234260 | AT3G10080.1 | 35.673 | 171 | 103 | 3 | 41 | 208 | 53 | 219 | 7.05e-23 | 92.4 |
| Msa1234260 | AT3G10080.2 | 35.673 | 171 | 103 | 3 | 41 | 208 | 124 | 290 | 3.66e-22 | 92.0 |
| Msa1234260 | AT5G38910.2 | 31.308 | 214 | 98 | 6 | 4 | 208 | 9 | 182 | 1.20e-14 | 69.7 |
Find 31 sgRNAs with CRISPR-Local
Find 43 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGCTTAAGGTTAATTT+TGG | 0.189584 | 8_2:-11481635 | Msa1234260:CDS |
| CTCTTAATCCTGGTGATGTT+TGG | 0.273703 | 8_2:-11481835 | Msa1234260:CDS |
| TCTTAATCCTGGTGATGTTT+GGG | 0.326087 | 8_2:-11481834 | Msa1234260:CDS |
| GAGTTTGTCGACGTGTTTGC+AGG | 0.363951 | 8_2:+11482058 | None:intergenic |
| TCCACAAATTATGAAGCTTA+AGG | 0.372687 | 8_2:-11481645 | Msa1234260:CDS |
| ATCGTTTCCAGACACCCCTT+CGG | 0.376629 | 8_2:-11482146 | Msa1234260:CDS |
| TCGTTTCCAGACACCCCTTC+GGG | 0.386894 | 8_2:-11482145 | Msa1234260:CDS |
| ACCTTAAGCTTCATAATTTG+TGG | 0.389226 | 8_2:+11481644 | None:intergenic |
| GGATAGCCCGAAGGGGTGTC+TGG | 0.391633 | 8_2:+11482139 | None:intergenic |
| ATCAGAATCAATAGCATTTG+AGG | 0.419441 | 8_2:+11482189 | None:intergenic |
| AGAATAGATCTTGGCTTCAA+TGG | 0.435930 | 8_2:-11481962 | Msa1234260:CDS |
| TTTATACTTAACACTGGTCC+TGG | 0.439650 | 8_2:-11481788 | Msa1234260:CDS |
| TTTATGAAAACTCTTAATCC+TGG | 0.452433 | 8_2:-11481845 | Msa1234260:CDS |
| GAATAAGCAACAGCATTTCC+AGG | 0.471369 | 8_2:+11481770 | None:intergenic |
| TCTGTAGCAAGAATAGATCT+TGG | 0.497563 | 8_2:-11481971 | Msa1234260:CDS |
| ATTCAAGGTCAAATGACTGC+TGG | 0.516733 | 8_2:-11481890 | Msa1234260:CDS |
| ATAAAATGCAAAAGTCCTGT+TGG | 0.527650 | 8_2:+11481806 | None:intergenic |
| GATAAGATACCAGGTCTCAA+TGG | 0.527717 | 8_2:-11482004 | Msa1234260:CDS |
| ATACCAGGTCTCAATGGACT+TGG | 0.540360 | 8_2:-11481998 | Msa1234260:CDS |
| GAATTTATAATCGTCATTCA+AGG | 0.543864 | 8_2:-11481905 | Msa1234260:CDS |
| TTAAGCTTCATAATTTGTGG+AGG | 0.583672 | 8_2:+11481647 | None:intergenic |
| ACTTGCATGGATAGCCCGAA+GGG | 0.586847 | 8_2:+11482131 | None:intergenic |
| GACTTGCATGGATAGCCCGA+AGG | 0.590826 | 8_2:+11482130 | None:intergenic |
| GTACCAATGCACACTCATCC+TGG | 0.591016 | 8_2:-11481935 | Msa1234260:CDS |
| GTAAAAGTCGATAAGATACC+AGG | 0.594356 | 8_2:-11482013 | Msa1234260:CDS |
| ATTATAAATTCGCCTACACC+AGG | 0.610124 | 8_2:+11481917 | None:intergenic |
| ATGCACACTCATCCTGGTGT+AGG | 0.618060 | 8_2:-11481929 | Msa1234260:CDS |
| ACACCAGGATGAGTGTGCAT+TGG | 0.622495 | 8_2:+11481932 | None:intergenic |
| TTCGGGCTATCCATGCAAGT+CGG | 0.659661 | 8_2:-11482128 | Msa1234260:CDS |
| ATACCAAGTCCATTGAGACC+TGG | 0.667082 | 8_2:+11481995 | None:intergenic |
| CTTGCATGGATAGCCCGAAG+GGG | 0.715273 | 8_2:+11482132 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAACTGATTTTTTGTTATT+TGG | - | chr8_2:11482144-11482163 | Msa1234260:CDS | 15.0% |
| !!! | GTTTTCATAAAAACTTTTGT+AGG | + | chr8_2:11482006-11482025 | None:intergenic | 20.0% |
| ! | GAATTTATAATCGTCATTCA+AGG | - | chr8_2:11481955-11481974 | Msa1234260:CDS | 25.0% |
| ! | TTTATGAAAACTCTTAATCC+TGG | - | chr8_2:11482015-11482034 | Msa1234260:CDS | 25.0% |
| !! | TTGCATTTTATACTTAACAC+TGG | - | chr8_2:11482066-11482085 | Msa1234260:CDS | 25.0% |
| !! | ATGAAGCTTAAGGTTAATTT+TGG | - | chr8_2:11482225-11482244 | Msa1234260:CDS | 25.0% |
| ATCAGAATCAATAGCATTTG+AGG | + | chr8_2:11481674-11481693 | None:intergenic | 30.0% | |
| !!! | TATCTTATCGACTTTTACAG+TGG | + | chr8_2:11481845-11481864 | None:intergenic | 30.0% |
| ATAAAATGCAAAAGTCCTGT+TGG | + | chr8_2:11482057-11482076 | None:intergenic | 30.0% | |
| ! | TTAAGCTTCATAATTTGTGG+AGG | + | chr8_2:11482216-11482235 | None:intergenic | 30.0% |
| TCCACAAATTATGAAGCTTA+AGG | - | chr8_2:11482215-11482234 | Msa1234260:CDS | 30.0% | |
| ACCTTAAGCTTCATAATTTG+TGG | + | chr8_2:11482219-11482238 | None:intergenic | 30.0% | |
| ! | AAGCTTAAGGTTAATTTTGG+TGG | - | chr8_2:11482228-11482247 | Msa1234260:CDS | 30.0% |
| ! | GCTAATGATTTTGTGTTCTC+TGG | - | chr8_2:11481769-11481788 | Msa1234260:CDS | 35.0% |
| GTAAAAGTCGATAAGATACC+AGG | - | chr8_2:11481847-11481866 | Msa1234260:CDS | 35.0% | |
| TCTGTAGCAAGAATAGATCT+TGG | - | chr8_2:11481889-11481908 | Msa1234260:CDS | 35.0% | |
| AGAATAGATCTTGGCTTCAA+TGG | - | chr8_2:11481898-11481917 | Msa1234260:CDS | 35.0% | |
| ATTATAAATTCGCCTACACC+AGG | + | chr8_2:11481946-11481965 | None:intergenic | 35.0% | |
| ! | TCTTAATCCTGGTGATGTTT+GGG | - | chr8_2:11482026-11482045 | Msa1234260:CDS | 35.0% |
| TTTATACTTAACACTGGTCC+TGG | - | chr8_2:11482072-11482091 | Msa1234260:CDS | 35.0% | |
| ! | AAGAGTAGTCTTTTGAACTG+TGG | + | chr8_2:11482187-11482206 | None:intergenic | 35.0% |
| !! | ACATTGTTTTCCGACTTGCA+TGG | + | chr8_2:11481745-11481764 | None:intergenic | 40.0% |
| GATAAGATACCAGGTCTCAA+TGG | - | chr8_2:11481856-11481875 | Msa1234260:CDS | 40.0% | |
| ATTCAAGGTCAAATGACTGC+TGG | - | chr8_2:11481970-11481989 | Msa1234260:CDS | 40.0% | |
| ! | CTCTTAATCCTGGTGATGTT+TGG | - | chr8_2:11482025-11482044 | Msa1234260:CDS | 40.0% |
| !! | GATGTTTGGGTTTTTCCAAC+AGG | - | chr8_2:11482039-11482058 | Msa1234260:CDS | 40.0% |
| GAATAAGCAACAGCATTTCC+AGG | + | chr8_2:11482093-11482112 | None:intergenic | 40.0% | |
| ! | GTCTTTTGAACTGTGGAAGT+TGG | + | chr8_2:11482180-11482199 | None:intergenic | 40.0% |
| !! | AAGGTTAATTTTGGTGGCAG+TGG | - | chr8_2:11482234-11482253 | Msa1234260:CDS | 40.0% |
| ! | ATACCAGGTCTCAATGGACT+TGG | - | chr8_2:11481862-11481881 | Msa1234260:CDS | 45.0% |
| ATACCAAGTCCATTGAGACC+TGG | + | chr8_2:11481868-11481887 | None:intergenic | 45.0% | |
| GGAAAAACCCAAACATCACC+AGG | + | chr8_2:11482036-11482055 | None:intergenic | 45.0% | |
| ATCGTTTCCAGACACCCCTT+CGG | - | chr8_2:11481714-11481733 | Msa1234260:CDS | 50.0% | |
| ACTTGCATGGATAGCCCGAA+GGG | + | chr8_2:11481732-11481751 | None:intergenic | 50.0% | |
| TTCGGGCTATCCATGCAAGT+CGG | - | chr8_2:11481732-11481751 | Msa1234260:CDS | 50.0% | |
| GAGTTTGTCGACGTGTTTGC+AGG | + | chr8_2:11481805-11481824 | None:intergenic | 50.0% | |
| GTACCAATGCACACTCATCC+TGG | - | chr8_2:11481925-11481944 | Msa1234260:CDS | 50.0% | |
| ACACCAGGATGAGTGTGCAT+TGG | + | chr8_2:11481931-11481950 | None:intergenic | 50.0% | |
| ATGCACACTCATCCTGGTGT+AGG | - | chr8_2:11481931-11481950 | Msa1234260:CDS | 50.0% | |
| TCGTTTCCAGACACCCCTTC+GGG | - | chr8_2:11481715-11481734 | Msa1234260:CDS | 55.0% | |
| CTTGCATGGATAGCCCGAAG+GGG | + | chr8_2:11481731-11481750 | None:intergenic | 55.0% | |
| GACTTGCATGGATAGCCCGA+AGG | + | chr8_2:11481733-11481752 | None:intergenic | 55.0% | |
| !! | GGATAGCCCGAAGGGGTGTC+TGG | + | chr8_2:11481724-11481743 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 11481622 | 11482260 | 11481622 | ID=Msa1234260;Name=Msa1234260 |
| chr8_2 | mRNA | 11481622 | 11482260 | 11481622 | ID=Msa1234260-mRNA-1;Parent=Msa1234260;Name=Msa1234260-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|-1|0|1|-1|1|1|0|212 |
| chr8_2 | exon | 11481622 | 11482260 | 11481622 | ID=Msa1234260-mRNA-1:exon:4464;Parent=Msa1234260-mRNA-1 |
| chr8_2 | CDS | 11481622 | 11482260 | 11481622 | ID=Msa1234260-mRNA-1:cds;Parent=Msa1234260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
