AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1234430


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1234430 MtrunA17_Chr8g0345201 95.789 380 3 2 1 367 1 380 0.0 751
Msa1234430 MtrunA17_Chr5g0412871 48.795 332 156 4 44 366 3 329 1.46e-104 316
Msa1234430 MtrunA17_Chr6g0488041 24.255 235 169 7 136 367 86 314 7.05e-15 75.5
Msa1234430 MtrunA17_Chr8g0360241 28.402 169 109 3 140 303 77 238 1.65e-14 74.3
Msa1234430 MtrunA17_Chr6g0475681 24.691 162 118 3 141 299 183 343 1.78e-14 74.7
Msa1234430 MtrunA17_Chr8g0387481 25.490 153 112 2 145 295 94 246 1.29e-12 68.9
Msa1234430 MtrunA17_Chr8g0389311 22.951 183 136 4 136 315 78 258 1.39e-12 68.6
Msa1234430 MtrunA17_Chr8g0389321 22.951 183 136 4 136 315 78 258 1.39e-12 68.6
Msa1234430 MtrunA17_Chr5g0400831 24.848 165 119 4 136 296 77 240 7.77e-12 66.2
Msa1234430 MtrunA17_Chr7g0248681 23.926 163 120 3 136 295 84 245 1.18e-11 65.9
Msa1234430 MtrunA17_Chr2g0324801 28.977 176 105 6 141 307 46 210 2.65e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1234430 AT1G72330.2 71.827 394 75 4 10 367 3 396 0.0 568
Msa1234430 AT1G72330.1 71.827 394 75 4 10 367 3 396 0.0 567
Msa1234430 AT1G17290.1 80.655 336 52 2 45 367 64 399 0.0 565
Msa1234430 AT1G72330.3 69.533 407 75 5 10 367 3 409 0.0 559
Msa1234430 AT1G23310.2 50.307 326 148 4 51 367 10 330 4.49e-106 319
Msa1234430 AT1G23310.1 50.307 326 148 4 51 367 10 330 1.48e-105 319
Msa1234430 AT1G70580.4 49.235 327 152 4 50 367 9 330 3.69e-104 315
Msa1234430 AT1G70580.2 49.235 327 152 4 50 367 9 330 3.69e-104 315
Msa1234430 AT1G70580.3 49.235 327 152 4 50 367 9 330 3.69e-104 315
Msa1234430 AT1G70580.1 49.235 327 152 4 50 367 9 330 3.69e-104 315
Msa1234430 AT2G24850.1 26.087 207 128 4 140 341 86 272 2.66e-15 77.4
Msa1234430 AT4G11280.1 27.434 226 155 7 145 367 97 316 3.81e-15 77.0
Msa1234430 AT4G28420.1 24.771 218 138 5 129 341 86 282 1.58e-14 74.7
Msa1234430 AT4G28420.2 24.638 207 131 4 129 330 86 272 2.24e-14 74.7
Msa1234430 AT5G53970.1 29.444 180 115 5 114 290 43 213 2.40e-14 74.3
Msa1234430 AT4G26200.1 25.301 166 119 4 134 295 89 253 5.75e-14 73.2
Msa1234430 AT4G28410.2 25.229 218 145 5 113 330 81 280 7.51e-14 72.8
Msa1234430 AT4G28410.1 25.229 218 145 5 113 330 81 280 8.66e-14 72.8
Msa1234430 AT1G62960.1 24.176 182 134 3 129 307 194 374 1.50e-13 72.4
Msa1234430 AT4G37770.1 25.000 164 119 3 136 296 77 239 2.89e-13 71.2
Msa1234430 AT5G51690.2 24.294 177 129 4 137 310 21 195 4.08e-13 70.5
Msa1234430 AT5G51690.1 24.294 177 129 4 137 310 144 318 4.10e-13 70.9
Msa1234430 AT5G36160.1 24.883 213 144 5 129 341 68 264 2.92e-12 67.8
Msa1234430 AT2G20610.2 24.257 202 138 4 129 330 92 278 3.16e-12 67.8
Msa1234430 AT2G20610.1 24.257 202 138 4 129 330 92 278 4.02e-12 67.8
Msa1234430 AT4G23600.1 22.979 235 149 8 116 343 50 259 1.47e-11 65.9
Msa1234430 AT4G23600.3 22.979 235 149 8 116 343 50 259 1.51e-11 65.5
Msa1234430 AT4G23590.1 22.619 252 162 7 102 341 27 257 2.82e-11 65.1

Find 102 sgRNAs with CRISPR-Local

Find 349 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGCCCTGTTGGATTGCC+TGG 0.174028 8_2:-11771717 None:intergenic
GAAAGAAGGTTTGGTTCTTT+TGG 0.206185 8_2:+11771891 Msa1234430:CDS
ATTTCCATATCAGGGTATTC+AGG 0.251842 8_2:+11770769 Msa1234430:intron
CCTCCGTTCTTTGTCTTCAA+TGG 0.279276 8_2:+11767494 Msa1234430:CDS
TGGAAAGCGAGGAGGTTATA+TGG 0.296188 8_2:+11772501 Msa1234430:CDS
ATGTGACTATCCAGCTCTTT+TGG 0.315701 8_2:+11770034 Msa1234430:CDS
AGTCCAAGGGCATCAGTGTT+AGG 0.320042 8_2:+11771676 Msa1234430:CDS
TAGGCACCAGTTGCTCTTCC+AGG 0.325169 8_2:-11770653 None:intergenic
AATCCGCTGCAGACAGATTC+AGG 0.326102 8_2:+11767406 Msa1234430:CDS
TAAATTTGTTCCCTCACATC+TGG 0.331054 8_2:-11772541 None:intergenic
AAAGAGTGAAATTTCTTCTC+AGG 0.347700 8_2:-11772283 None:intergenic
GTTGCTTCATCAAGATAATA+TGG 0.353298 8_2:-11771603 None:intergenic
CATTGGAAATCCTCAGTCTC+TGG 0.360980 8_2:+11769885 Msa1234430:CDS
TCTTGATGAAGCAACTGGTT+GGG 0.394854 8_2:+11771611 Msa1234430:CDS
TGTTTGGCATCAGGCTATCA+TGG 0.398247 8_2:+11772472 Msa1234430:intron
CTTGATGAAGCAACTGGTTG+GGG 0.405077 8_2:+11771612 Msa1234430:CDS
CGCTCAAAATATTAACCCTC+AGG 0.406784 8_2:+11767542 Msa1234430:CDS
TAGATAATTTACTGCAACAT+TGG 0.412151 8_2:+11769868 Msa1234430:intron
TACCCTCCATGGTGGCCATC+TGG 0.418290 8_2:+11771097 Msa1234430:CDS
TGAGTAATTGCATCATCATA+TGG 0.423018 8_2:-11771010 None:intergenic
ATAAACCCAGGCAATCCAAC+AGG 0.430090 8_2:+11771711 Msa1234430:CDS
CAATACCTGACTATGACTAT+AGG 0.434197 8_2:-11770672 None:intergenic
CCTGCCCTGTTGGATTGCCT+GGG 0.436736 8_2:-11771716 None:intergenic
ATCTGTCAAGAAAATGTCAT+TGG 0.442497 8_2:-11770849 None:intergenic
CAGATCCCTGGAAGAGCAAC+TGG 0.442624 8_2:+11770647 Msa1234430:CDS
TATTATCTTGATGAAGCAAC+TGG 0.443419 8_2:+11771606 Msa1234430:CDS
TCATCAAACGAATGAGCATC+TGG 0.451967 8_2:-11769173 None:intergenic
TTTCCATATCAGGGTATTCA+GGG 0.458818 8_2:+11770770 Msa1234430:intron
GTTTGGCATCAGGCTATCAT+GGG 0.462803 8_2:+11772473 Msa1234430:intron
TTGTAGCTCACCTGCCCTGT+TGG 0.469395 8_2:-11771726 None:intergenic
AACACTGATGCCCTTGGACT+TGG 0.471424 8_2:-11771673 None:intergenic
AAACAAGTGAACGGTTGAAA+AGG 0.477236 8_2:-11767431 None:intergenic
GTATCTCGGTCCATGGGATA+CGG 0.483453 8_2:+11772313 Msa1234430:CDS
CAAATTGTGGATCAGATCCC+TGG 0.483599 8_2:+11770635 Msa1234430:CDS
GTCCAAGGGCATCAGTGTTA+GGG 0.485526 8_2:+11771677 Msa1234430:CDS
GAAATTTCACTCTTTCAAGA+AGG 0.487439 8_2:+11772291 Msa1234430:CDS
AGCCCTAACACTGATGCCCT+TGG 0.492947 8_2:-11771679 None:intergenic
AAATTTGTTCCCTCACATCT+GGG 0.493584 8_2:-11772540 None:intergenic
ATTACTCATTAGATCAGAAA+AGG 0.495437 8_2:+11771025 Msa1234430:CDS
CAAGAAGGTATCTCGGTCCA+TGG 0.500046 8_2:+11772306 Msa1234430:CDS
TCTTGCTGAGGAAAATCAAC+GGG 0.500346 8_2:+11771849 Msa1234430:CDS
GGAGGTTATATGGAGGTGAC+TGG 0.502434 8_2:+11772511 Msa1234430:CDS
CTGATTCAATAGAGAGAGCT+TGG 0.502786 8_2:+11770612 Msa1234430:intron
ATCTTGATGAAGCAACTGGT+TGG 0.502802 8_2:+11771610 Msa1234430:CDS
TGCAATAGCCGCTGGAATTG+AGG 0.504928 8_2:+11770802 Msa1234430:CDS
AAATGTCAGTATGCTGTTCG+AGG 0.506339 8_2:+11768748 Msa1234430:CDS
GACAAAGAACGGAGGGGAGA+AGG 0.507553 8_2:-11767486 None:intergenic
TGGTGCCTATAGTCATAGTC+AGG 0.517915 8_2:+11770667 Msa1234430:CDS
ATCATTGTCGCCGTATCCCA+TGG 0.518872 8_2:-11772323 None:intergenic
ACTCTTTCAAGAAGGTATCT+CGG 0.524240 8_2:+11772299 Msa1234430:CDS
AAACGAATGAGCATCTGGAT+TGG 0.528171 8_2:-11769168 None:intergenic
ATCTGAACTCAAGAAGCAGT+TGG 0.529742 8_2:+11771644 Msa1234430:CDS
GTAATTGAGGCTGAGTAGAG+AGG 0.534826 8_2:-11771077 None:intergenic
TAGAGAGGGTACTGAGGGAT+GGG 0.535149 8_2:-11771062 None:intergenic
ATTGGAAATCCTCAGTCTCT+GGG 0.536191 8_2:+11769886 Msa1234430:CDS
AGAGAGAGCTTGGCAAATTG+TGG 0.538808 8_2:+11770622 Msa1234430:intron
TTACGTGATGCAATAGCCGC+TGG 0.539193 8_2:+11770794 Msa1234430:CDS
GCCACCATGGAGGGTAATTG+AGG 0.545063 8_2:-11771090 None:intergenic
TACCAGATGGCCACCATGGA+GGG 0.546397 8_2:-11771099 None:intergenic
GAGGGAACAAATTTATAAAG+TGG 0.548832 8_2:+11772549 Msa1234430:CDS
CCCAGGCAATCCAACAGGGC+AGG 0.551402 8_2:+11771716 Msa1234430:CDS
GTTGGAAGATGCCAAGTCCA+AGG 0.558140 8_2:+11771662 Msa1234430:CDS
AAAATGTCATTGGCATTACA+AGG 0.558712 8_2:-11770839 None:intergenic
GGCTGCTGGCCCAGAGACTG+AGG 0.562423 8_2:-11769895 None:intergenic
ACTTACCTTTGGAGACGGAC+TGG 0.563121 8_2:-11772363 None:intergenic
GCTGAGTAGAGAGGGTACTG+AGG 0.564462 8_2:-11771068 None:intergenic
TACCGACTTACCTTTGGAGA+CGG 0.565061 8_2:-11772368 None:intergenic
TTTGGACAAAAGTGAAACAC+AGG 0.570857 8_2:+11770052 Msa1234430:CDS
GCTTTAGCTGTTATAAACCC+AGG 0.575885 8_2:+11771699 Msa1234430:CDS
CTGAGTAGAGAGGGTACTGA+GGG 0.576831 8_2:-11771067 None:intergenic
TCAGCCTCAATTACCCTCCA+TGG 0.578129 8_2:+11771086 Msa1234430:CDS
AGGCACCAGTTGCTCTTCCA+GGG 0.581572 8_2:-11770652 None:intergenic
TCAGGCTATCATGGGGAGTG+TGG 0.583981 8_2:+11772481 Msa1234430:intron
TAATTGAGGCTGAGTAGAGA+GGG 0.586157 8_2:-11771076 None:intergenic
GTAGAGAGGGTACTGAGGGA+TGG 0.592245 8_2:-11771063 None:intergenic
AAGAAGGTATCTCGGTCCAT+GGG 0.592457 8_2:+11772307 Msa1234430:CDS
GAGGTTATATGGAGGTGACT+GGG 0.595186 8_2:+11772512 Msa1234430:CDS
AGATGCTCATTCGTTTGATG+AGG 0.599601 8_2:+11769175 Msa1234430:CDS
CATTGAAGACAAAGAACGGA+GGG 0.602118 8_2:-11767493 None:intergenic
CTCATTAGATCAGAAAAGGA+TGG 0.606155 8_2:+11771029 Msa1234430:CDS
AAGCCATTGAAGACAAAGAA+CGG 0.607033 8_2:-11767497 None:intergenic
TCTTTCCAGTCCGTCTCCAA+AGG 0.607192 8_2:+11772358 Msa1234430:CDS
ACTTTACCAGATGGCCACCA+TGG 0.607824 8_2:-11771103 None:intergenic
CATGGGGAGTGTGGAAAGCG+AGG 0.612956 8_2:+11772490 Msa1234430:CDS
TTGGAAGATGCCAAGTCCAA+GGG 0.616464 8_2:+11771663 Msa1234430:CDS
TTCTTGCTGAGGAAAATCAA+CGG 0.620444 8_2:+11771848 Msa1234430:CDS
AAGAACGGAGGGGAGAAGGA+TGG 0.623284 8_2:-11767482 None:intergenic
GCTGGAATTGAGGAGCGTGA+TGG 0.627726 8_2:+11770812 Msa1234430:CDS
GTGCCTGAATCTGTCTGCAG+CGG 0.634809 8_2:-11767409 None:intergenic
AATTTGTTCCCTCACATCTG+GGG 0.645832 8_2:-11772539 None:intergenic
TTTGGCATCAGGCTATCATG+GGG 0.665460 8_2:+11772474 Msa1234430:intron
CCATTGAAGACAAAGAACGG+AGG 0.677733 8_2:-11767494 None:intergenic
TTACCAGATGGCCACCATGG+AGG 0.678131 8_2:-11771100 None:intergenic
AAAGCGAGGAGGTTATATGG+AGG 0.681303 8_2:+11772504 Msa1234430:CDS
TTGATGAAGCAACTGGTTGG+GGG 0.682358 8_2:+11771613 Msa1234430:CDS
TTGGACAAAAGTGAAACACA+GGG 0.683072 8_2:+11770053 Msa1234430:CDS
TAAACCCAGGCAATCCAACA+GGG 0.684915 8_2:+11771712 Msa1234430:CDS
GGGGAGTGTGGAAAGCGAGG+AGG 0.694971 8_2:+11772493 Msa1234430:CDS
ATGTCTGTAGGTTCTTGCTG+AGG 0.696225 8_2:+11771837 Msa1234430:intron
ATTGAAGACAAAGAACGGAG+GGG 0.701204 8_2:-11767492 None:intergenic
GCCTCAATTACCCTCCATGG+TGG 0.707215 8_2:+11771089 Msa1234430:CDS
ATCACGCTCCTCAATTCCAG+CGG 0.710500 8_2:-11770810 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATCAATTTTTTTATG+TGG + chr8_2:11767672-11767691 Msa1234430:intron 10.0%
!!! TTTTATCAATTTTTTTATGT+GGG + chr8_2:11767673-11767692 Msa1234430:intron 10.0%
!! AAAACCAAAAATAACAAAAA+GGG - chr8_2:11767757-11767776 None:intergenic 15.0%
!! AAAAACCAAAAATAACAAAA+AGG - chr8_2:11767758-11767777 None:intergenic 15.0%
!!! TTTTGTTATTTTTGGTTTTT+AGG + chr8_2:11767758-11767777 Msa1234430:intron 15.0%
!!! TTTTGAGATTTATTTGATTT+GGG + chr8_2:11767800-11767819 Msa1234430:intron 15.0%
!!! TTGTTTTTTTATGGTTTATA+AGG + chr8_2:11767884-11767903 Msa1234430:intron 15.0%
!! CAAACAAACTTATAAATTAA+GGG - chr8_2:11768099-11768118 None:intergenic 15.0%
!! ACAAACAAACTTATAAATTA+AGG - chr8_2:11768100-11768119 None:intergenic 15.0%
!!! GTTTATCATATTTGATAATA+TGG + chr8_2:11771804-11771823 Msa1234430:intron 15.0%
!! AAAAAAAAAACAAAACCTGA+GGG - chr8_2:11767560-11767579 None:intergenic 20.0%
!! AAAAAAAAAAACAAAACCTG+AGG - chr8_2:11767561-11767580 None:intergenic 20.0%
!! AAAAACAAAAAACAACGAAA+CGG - chr8_2:11767626-11767645 None:intergenic 20.0%
!!! TTTCGTTGTTTTTTGTTTTT+AGG + chr8_2:11767626-11767645 Msa1234430:intron 20.0%
!!! GTTTTGAGATTTATTTGATT+TGG + chr8_2:11767799-11767818 Msa1234430:intron 20.0%
!!! ATGCTGATTTTATTACATAA+GGG + chr8_2:11767844-11767863 Msa1234430:intron 20.0%
!!! ATTTTATTACATAAGGGTTT+TGG + chr8_2:11767850-11767869 Msa1234430:intron 20.0%
!!! TTTTATTACATAAGGGTTTT+GGG + chr8_2:11767851-11767870 Msa1234430:intron 20.0%
!!! CAACTTTTGATTGAATTATT+GGG + chr8_2:11767968-11767987 Msa1234430:intron 20.0%
!!! AATTAGTGGGTTTTTAATTT+TGG + chr8_2:11768181-11768200 Msa1234430:intron 20.0%
!!! ATTAGTGGGTTTTTAATTTT+GGG + chr8_2:11768182-11768201 Msa1234430:intron 20.0%
!!! TTTTAATTTTGGGGTTTATA+CGG + chr8_2:11768192-11768211 Msa1234430:intron 20.0%
!!! TGTAGTTTTTGCTAAAATTA+TGG + chr8_2:11768499-11768518 Msa1234430:intron 20.0%
!!! TTTGTGAAGTATTATGTTTT+TGG + chr8_2:11768636-11768655 Msa1234430:intron 20.0%
!!! TTGTGAAGTATTATGTTTTT+GGG + chr8_2:11768637-11768656 Msa1234430:intron 20.0%
!!! AAAACAGTTTTGTTAAATTG+TGG + chr8_2:11768837-11768856 Msa1234430:intron 20.0%
!! TAGCATGTTATTATATAGAT+TGG - chr8_2:11769593-11769612 None:intergenic 20.0%
!! TGATATTCCAATTTATCAAT+TGG + chr8_2:11769631-11769650 Msa1234430:intron 20.0%
!! ATTTAAATTGCTAATCATAG+TGG + chr8_2:11770116-11770135 Msa1234430:intron 20.0%
!! ATTGATTGGGTTATTTAATT+TGG + chr8_2:11770691-11770710 Msa1234430:intron 20.0%
!!! ATCATTTCTTCTCTATTTTT+AGG + chr8_2:11770986-11771005 Msa1234430:intron 20.0%
!!! CGCAAATCATAATTTAATTT+AGG + chr8_2:11771143-11771162 Msa1234430:intron 20.0%
!! AGAATACAAATCAGAAAAAA+TGG + chr8_2:11771419-11771438 Msa1234430:intron 20.0%
!! AAATCAGAAAAAATGGTATA+TGG + chr8_2:11771426-11771445 Msa1234430:intron 20.0%
!!! GATTTTGTTATTGTTTCTAA+AGG + chr8_2:11771578-11771597 Msa1234430:intron 20.0%
!!! TTTGAACAAACCATTATTTT+CGG + chr8_2:11772144-11772163 Msa1234430:intron 20.0%
! ACTGAAAAACAAGAATCAAA+GGG - chr8_2:11767588-11767607 None:intergenic 25.0%
! AAAACAAAAAACAACGAAAC+GGG - chr8_2:11767625-11767644 None:intergenic 25.0%
!!! GATGCTGATTTTATTACATA+AGG + chr8_2:11767843-11767862 Msa1234430:intron 25.0%
!!! TTGGTTGGTTTGTTTTTTTA+TGG + chr8_2:11767875-11767894 Msa1234430:intron 25.0%
! CCAATAATTCAATCAAAAGT+TGG - chr8_2:11767970-11767989 None:intergenic 25.0%
!!! CCAACTTTTGATTGAATTAT+TGG + chr8_2:11767967-11767986 Msa1234430:intron 25.0%
! AAAATCCCAAATAACAATCA+GGG - chr8_2:11768017-11768036 None:intergenic 25.0%
!!! TAAGCTTTTGATTGAATTAG+TGG + chr8_2:11768167-11768186 Msa1234430:intron 25.0%
!!! AAGCTTTTGATTGAATTAGT+GGG + chr8_2:11768168-11768187 Msa1234430:intron 25.0%
!!! TTAGTGGGTTTTTAATTTTG+GGG + chr8_2:11768183-11768202 Msa1234430:intron 25.0%
!!! TTTAATTTTGGGGTTTATAC+GGG + chr8_2:11768193-11768212 Msa1234430:intron 25.0%
! CAAACTATTTATCAAACTTG+CGG - chr8_2:11768428-11768447 None:intergenic 25.0%
!! AGTTTTTGCTAAAATTATGG+TGG + chr8_2:11768502-11768521 Msa1234430:intron 25.0%
! TGTAACTGAAGATCAAATAT+TGG - chr8_2:11768691-11768710 None:intergenic 25.0%
! GACACAATTTAAATATACAC+AGG - chr8_2:11768809-11768828 None:intergenic 25.0%
!!! GATTTTTTGACAACCATATT+AGG + chr8_2:11768881-11768900 Msa1234430:intron 25.0%
!!! ATTTTAAATCGGTGTTTTGA+TGG - chr8_2:11768973-11768992 None:intergenic 25.0%
!! GTCAGGACAAAATTTTAAAT+CGG - chr8_2:11768984-11769003 None:intergenic 25.0%
!!! TTTAAAATTTTGTCCTGACT+TGG + chr8_2:11768985-11769004 Msa1234430:intron 25.0%
!!! GTATTTGGTTTTTTATCATC+AGG + chr8_2:11769230-11769249 Msa1234430:intron 25.0%
! TAGAGAATACATAAAAGACA+AGG + chr8_2:11769438-11769457 Msa1234430:intron 25.0%
! AGAGAATACATAAAAGACAA+GGG + chr8_2:11769439-11769458 Msa1234430:intron 25.0%
! TTCTACACCAATTGATAAAT+TGG - chr8_2:11769641-11769660 None:intergenic 25.0%
! TAGATAATTTACTGCAACAT+TGG + chr8_2:11769868-11769887 Msa1234430:intron 25.0%
!! TTGTTTCTTATAGTTCTGTA+TGG + chr8_2:11769939-11769958 Msa1234430:intron 25.0%
! TGAGATTGTAAAATAAGCAT+TGG - chr8_2:11769993-11770012 None:intergenic 25.0%
! AGACTACAACATTGTAAAAA+TGG - chr8_2:11770255-11770274 None:intergenic 25.0%
! AAATCAGTGTTGTCAAATAA+AGG + chr8_2:11770337-11770356 Msa1234430:intron 25.0%
! ATTAAAACCAATGTTGTCAA+CGG - chr8_2:11770524-11770543 None:intergenic 25.0%
! GAAAATTATCGAAAGCAAAT+TGG - chr8_2:11770898-11770917 None:intergenic 25.0%
! ATTACTCATTAGATCAGAAA+AGG + chr8_2:11771025-11771044 Msa1234430:CDS 25.0%
! TATAAGAAAACTTTACCAGA+TGG - chr8_2:11771115-11771134 None:intergenic 25.0%
! AAAAAATGGTATATGGTCAA+TGG + chr8_2:11771433-11771452 Msa1234430:intron 25.0%
! ACAAATATGCATGTATCATT+GGG + chr8_2:11771477-11771496 Msa1234430:intron 25.0%
!! TTACAATGGAGTGTTAATAT+AGG + chr8_2:11771750-11771769 Msa1234430:intron 25.0%
! TACAAAATATCCTCAAATAG+CGG + chr8_2:11772101-11772120 Msa1234430:intron 25.0%
!!! TTTTTTTTGTTGAAACCATG+TGG + chr8_2:11772194-11772213 Msa1234430:intron 25.0%
!! GACTTTTATGTTATGCTAAT+AGG + chr8_2:11772423-11772442 Msa1234430:intron 25.0%
!! TAATATTTTGAGCGGTAACA+GGG - chr8_2:11767536-11767555 None:intergenic 30.0%
!! TTAATATTTTGAGCGGTAAC+AGG - chr8_2:11767537-11767556 None:intergenic 30.0%
CACTGAAAAACAAGAATCAA+AGG - chr8_2:11767589-11767608 None:intergenic 30.0%
!!! CTTTGATTCTTGTTTTTCAG+TGG + chr8_2:11767587-11767606 Msa1234430:intron 30.0%
!!! GATGCCCTTTTTGTTATTTT+TGG + chr8_2:11767750-11767769 Msa1234430:intron 30.0%
ACATTTGCATGCAAAATAGA+TGG + chr8_2:11767915-11767934 Msa1234430:intron 30.0%
CAAAATCCCAAATAACAATC+AGG - chr8_2:11768018-11768037 None:intergenic 30.0%
ATGCTTCTGTAATTACAGAA+GGG + chr8_2:11768049-11768068 Msa1234430:intron 30.0%
! TGTAATTACAGAAGGGTTTT+GGG + chr8_2:11768056-11768075 Msa1234430:intron 30.0%
TTGTATGCAAAATTGATGTG+TGG + chr8_2:11768124-11768143 Msa1234430:intron 30.0%
!!! CTGATCTTTTGTTTTTGCTT+TGG + chr8_2:11768255-11768274 Msa1234430:intron 30.0%
!! TTTTTGCTTTGGTTTCTGTT+TGG + chr8_2:11768266-11768285 Msa1234430:intron 30.0%
!!! CTTAGTGTATGTTTTGAGTT+CGG + chr8_2:11768452-11768471 Msa1234430:intron 30.0%
!!! TTTTGAGTTCGGTTAAATCA+TGG + chr8_2:11768463-11768482 Msa1234430:intron 30.0%
AAATATTGGTGCAAGTAAAG+TGG - chr8_2:11768677-11768696 None:intergenic 30.0%
!!! CAATGTTTTTTTTCCTGCTT+AGG + chr8_2:11768720-11768739 Msa1234430:intron 30.0%
CATGTTTGTATGCAAATGTT+TGG + chr8_2:11768941-11768960 Msa1234430:intron 30.0%
TTCATATCTTCTGCAGTATT+TGG + chr8_2:11769215-11769234 Msa1234430:intron 30.0%
!!! TTGGTTTTTTATCATCAGGA+TGG + chr8_2:11769234-11769253 Msa1234430:intron 30.0%
CAGTCAATACTGTGTTAAAA+TGG + chr8_2:11769697-11769716 Msa1234430:intron 30.0%
ACTATAAGAAACAAACCTCT+CGG - chr8_2:11769933-11769952 None:intergenic 30.0%
! ACTGCAAATACATTTTCCAT+CGG - chr8_2:11770164-11770183 None:intergenic 30.0%
TTGAATAGTCTATCTATCCA+CGG + chr8_2:11770183-11770202 Msa1234430:intron 30.0%
! CAATTACAATTTTGTTACCG+TGG - chr8_2:11770203-11770222 None:intergenic 30.0%
! GCTTTTGTTACCAATGATTT+TGG + chr8_2:11770298-11770317 Msa1234430:intron 30.0%
ACAACATAGACCAAAATCAT+TGG - chr8_2:11770311-11770330 None:intergenic 30.0%
TGGTTAGATAGTAGTTATAG+TGG + chr8_2:11770443-11770462 Msa1234430:intron 30.0%
TAATTCGTGAAGACAATAAG+AGG - chr8_2:11770550-11770569 None:intergenic 30.0%
AGCACTGTAACATAAATGAA+AGG - chr8_2:11770594-11770613 None:intergenic 30.0%
ACCTCACAGTGAATAATAAA+GGG - chr8_2:11770733-11770752 None:intergenic 30.0%
TGGAAATATGAACAGTTTCA+TGG - chr8_2:11770756-11770775 None:intergenic 30.0%
ACTGTTCATATTTCCATATC+AGG + chr8_2:11770760-11770779 Msa1234430:intron 30.0%
CTGTTCATATTTCCATATCA+GGG + chr8_2:11770761-11770780 Msa1234430:intron 30.0%
AAAATGTCATTGGCATTACA+AGG - chr8_2:11770842-11770861 None:intergenic 30.0%
ATCTGTCAAGAAAATGTCAT+TGG - chr8_2:11770852-11770871 None:intergenic 30.0%
! AATGACATTTTCTTGACAGA+TGG + chr8_2:11770851-11770870 Msa1234430:CDS 30.0%
TGAGTAATTGCATCATCATA+TGG - chr8_2:11771013-11771032 None:intergenic 30.0%
TTCCAAATTATGCTATGCTT+TGG - chr8_2:11771242-11771261 None:intergenic 30.0%
! CTGATTTGTATTCTTGAAGA+TGG - chr8_2:11771413-11771432 None:intergenic 30.0%
GACAAATATGCATGTATCAT+TGG + chr8_2:11771476-11771495 Msa1234430:intron 30.0%
! GTTACTTTGAAAATCTGAGT+TGG + chr8_2:11771512-11771531 Msa1234430:intron 30.0%
! GGAGCTATGCTTTTATATTA+CGG + chr8_2:11771533-11771552 Msa1234430:intron 30.0%
! GAGCTATGCTTTTATATTAC+GGG + chr8_2:11771534-11771553 Msa1234430:intron 30.0%
! AGCTATGCTTTTATATTACG+GGG + chr8_2:11771535-11771554 Msa1234430:intron 30.0%
GTTGCTTCATCAAGATAATA+TGG - chr8_2:11771606-11771625 None:intergenic 30.0%
TATTATCTTGATGAAGCAAC+TGG + chr8_2:11771606-11771625 Msa1234430:CDS 30.0%
! GTAGAATTTTGCAAGAAAGA+AGG + chr8_2:11771877-11771896 Msa1234430:CDS 30.0%
! ATTTTGCAAGAAAGAAGGTT+TGG + chr8_2:11771882-11771901 Msa1234430:CDS 30.0%
CAAATTCTGATACACTATAG+CGG - chr8_2:11772046-11772065 None:intergenic 30.0%
TAGAGAATTGCCGAAAATAA+TGG - chr8_2:11772157-11772176 None:intergenic 30.0%
AAAGAGTGAAATTTCTTCTC+AGG - chr8_2:11772286-11772305 None:intergenic 30.0%
GAAATTTCACTCTTTCAAGA+AGG + chr8_2:11772291-11772310 Msa1234430:CDS 30.0%
! CAAACAGAGACATTTTCAAT+CGG - chr8_2:11772458-11772477 None:intergenic 30.0%
GAGGGAACAAATTTATAAAG+TGG + chr8_2:11772549-11772568 Msa1234430:CDS 30.0%
AAACAAGTGAACGGTTGAAA+AGG - chr8_2:11767434-11767453 None:intergenic 35.0%
!!! ACCGTTCACTTGTTTTTGTT+CGG + chr8_2:11767439-11767458 Msa1234430:CDS 35.0%
TCCGAACAAAAACAAGTGAA+CGG - chr8_2:11767443-11767462 None:intergenic 35.0%
AAGCCATTGAAGACAAAGAA+CGG - chr8_2:11767500-11767519 None:intergenic 35.0%
!! CTGAGGGTTAATATTTTGAG+CGG - chr8_2:11767544-11767563 None:intergenic 35.0%
CATAAGCATCAGATTCATCA+TGG - chr8_2:11767706-11767725 None:intergenic 35.0%
!!! TTACATAAGGGTTTTGGGTT+TGG + chr8_2:11767856-11767875 Msa1234430:intron 35.0%
! ATAGATGGTGTTTTGTGATG+TGG + chr8_2:11767930-11767949 Msa1234430:intron 35.0%
!! CCATACCCTGATTGTTATTT+GGG + chr8_2:11768009-11768028 Msa1234430:intron 35.0%
GATGCTTCTGTAATTACAGA+AGG + chr8_2:11768048-11768067 Msa1234430:intron 35.0%
! CTGTAATTACAGAAGGGTTT+TGG + chr8_2:11768055-11768074 Msa1234430:intron 35.0%
CGCACAAAAACAAAGCAAAA+AGG - chr8_2:11768349-11768368 None:intergenic 35.0%
TTGTGGCAAAAGACATGTTA+TGG + chr8_2:11768392-11768411 Msa1234430:intron 35.0%
CAATGAGTTCAGCAAAAACA+CGG - chr8_2:11768532-11768551 None:intergenic 35.0%
GTGCATATGCATGTTTAGAT+TGG - chr8_2:11768556-11768575 None:intergenic 35.0%
TCTAAACATGCATATGCACT+TGG + chr8_2:11768557-11768576 Msa1234430:intron 35.0%
CTAAACATGCATATGCACTT+GGG + chr8_2:11768558-11768577 Msa1234430:intron 35.0%
!! GTTTTGTTAAATTGTGGCCT+TGG + chr8_2:11768843-11768862 Msa1234430:intron 35.0%
CATATTAGGCAATCTGTGAA+GGG + chr8_2:11768895-11768914 Msa1234430:intron 35.0%
TGCATACAAACATGTCATTG+CGG - chr8_2:11768935-11768954 None:intergenic 35.0%
!!! TTAAATCGGTGTTTTGATGG+CGG - chr8_2:11768970-11768989 None:intergenic 35.0%
TTGCAAGTTCTGCAACATTA+AGG - chr8_2:11769135-11769154 None:intergenic 35.0%
! CATCAGGATGGCTTTTTAAA+AGG + chr8_2:11769246-11769265 Msa1234430:intron 35.0%
ATGCTATAAAGCTCCTGATA+GGG + chr8_2:11769279-11769298 Msa1234430:intron 35.0%
!!! TAGTAGGCAGCCTTATTTTA+TGG + chr8_2:11769336-11769355 Msa1234430:intron 35.0%
TGGACTGTGTCCATAAAATA+AGG - chr8_2:11769349-11769368 None:intergenic 35.0%
!! TTCTCTAGATTCACTGACTT+CGG - chr8_2:11769425-11769444 None:intergenic 35.0%
ACCTCTCGGAAAAAAGTAAT+TGG - chr8_2:11769919-11769938 None:intergenic 35.0%
TTTACAATCTCATCTCTGTC+AGG + chr8_2:11770001-11770020 Msa1234430:intron 35.0%
TTTGGACAAAAGTGAAACAC+AGG + chr8_2:11770052-11770071 Msa1234430:CDS 35.0%
TTGGACAAAAGTGAAACACA+GGG + chr8_2:11770053-11770072 Msa1234430:CDS 35.0%
!! AATCTTAGTAGTTTTGCCGA+TGG + chr8_2:11770145-11770164 Msa1234430:intron 35.0%
TAAAGGCTATAGATGTGCTA+CGG + chr8_2:11770354-11770373 Msa1234430:intron 35.0%
! TTGTACTAAAAAGCGTATCG+TGG - chr8_2:11770419-11770438 None:intergenic 35.0%
!! ACGCTTTTTAGTACAAAGTG+TGG + chr8_2:11770423-11770442 Msa1234430:intron 35.0%
TCTATAACACTGTAGCATTG+TGG + chr8_2:11770467-11770486 Msa1234430:intron 35.0%
! GAATTATGTTTTTCCCTGTG+TGG + chr8_2:11770564-11770583 Msa1234430:intron 35.0%
CAATACCTGACTATGACTAT+AGG - chr8_2:11770675-11770694 None:intergenic 35.0%
!! AGTCATAGTCAGGTATTGAT+TGG + chr8_2:11770677-11770696 Msa1234430:intron 35.0%
!! GTCATAGTCAGGTATTGATT+GGG + chr8_2:11770678-11770697 Msa1234430:intron 35.0%
CCTCACAGTGAATAATAAAG+GGG - chr8_2:11770732-11770751 None:intergenic 35.0%
GACCTCACAGTGAATAATAA+AGG - chr8_2:11770734-11770753 None:intergenic 35.0%
! ATTTCCATATCAGGGTATTC+AGG + chr8_2:11770769-11770788 Msa1234430:intron 35.0%
! TTTCCATATCAGGGTATTCA+GGG + chr8_2:11770770-11770789 Msa1234430:intron 35.0%
CAAATTGGAAACATACAGCT+GGG - chr8_2:11770883-11770902 None:intergenic 35.0%
CTCATTAGATCAGAAAAGGA+TGG + chr8_2:11771029-11771048 Msa1234430:CDS 35.0%
TTAGCAGTGTTGTCAAATGA+TGG + chr8_2:11771197-11771216 Msa1234430:intron 35.0%
TTGTCAAATGATGGCTATAG+CGG + chr8_2:11771206-11771225 Msa1234430:intron 35.0%
TGCCAAAGCATAGCATAATT+TGG + chr8_2:11771237-11771256 Msa1234430:intron 35.0%
AATACCAGTGTTGTCAATTG+CGG - chr8_2:11771373-11771392 None:intergenic 35.0%
CAACACTGGTATTTAGTAGT+AGG + chr8_2:11771380-11771399 Msa1234430:intron 35.0%
! TGCTTTTATATTACGGGGAT+TGG + chr8_2:11771540-11771559 Msa1234430:intron 35.0%
AGGTGAGCTACAAATTACAA+TGG + chr8_2:11771736-11771755 Msa1234430:intron 35.0%
! CAATGGAGTGTTAATATAGG+AGG + chr8_2:11771753-11771772 Msa1234430:intron 35.0%
TTCTTGCTGAGGAAAATCAA+CGG + chr8_2:11771848-11771867 Msa1234430:CDS 35.0%
!!! GAAAGAAGGTTTGGTTCTTT+TGG + chr8_2:11771891-11771910 Msa1234430:CDS 35.0%
! CTGCACGAAATTCATTTTGT+AGG + chr8_2:11772237-11772256 Msa1234430:intron 35.0%
!! ACTCTTTCAAGAAGGTATCT+CGG + chr8_2:11772299-11772318 Msa1234430:CDS 35.0%
!! TCATTATACCGACTTACCTT+TGG - chr8_2:11772377-11772396 None:intergenic 35.0%
CGATTGAAAATGTCTCTGTT+TGG + chr8_2:11772456-11772475 Msa1234430:intron 35.0%
! AAATTTGTTCCCTCACATCT+GGG - chr8_2:11772543-11772562 None:intergenic 35.0%
! TAAATTTGTTCCCTCACATC+TGG - chr8_2:11772544-11772563 None:intergenic 35.0%
ATTGAAGACAAAGAACGGAG+GGG - chr8_2:11767495-11767514 None:intergenic 40.0%
CATTGAAGACAAAGAACGGA+GGG - chr8_2:11767496-11767515 None:intergenic 40.0%
CGCTCAAAATATTAACCCTC+AGG + chr8_2:11767542-11767561 Msa1234430:CDS 40.0%
!!! ATAAGGGTTTTGGGTTTGGT+TGG + chr8_2:11767860-11767879 Msa1234430:intron 40.0%
TGTGATGTGGTTGTTGATCA+AGG + chr8_2:11767943-11767962 Msa1234430:intron 40.0%
GTGATGTGGTTGTTGATCAA+GGG + chr8_2:11767944-11767963 Msa1234430:intron 40.0%
! GCCATACCCTGATTGTTATT+TGG + chr8_2:11768008-11768027 Msa1234430:intron 40.0%
CCCAAATAACAATCAGGGTA+TGG - chr8_2:11768012-11768031 None:intergenic 40.0%
!!! ATTACAGAAGGGTTTTGGGT+TGG + chr8_2:11768060-11768079 Msa1234430:intron 40.0%
TGCAAAATTGATGTGTGGTG+TGG + chr8_2:11768129-11768148 Msa1234430:intron 40.0%
TGGTGTGGTTGTTGATCAAA+GGG + chr8_2:11768144-11768163 Msa1234430:intron 40.0%
!!! TTTGTTTTTGTGCGCTACCA+TGG + chr8_2:11768355-11768374 Msa1234430:intron 40.0%
!!! TTGTTTTTGTGCGCTACCAT+GGG + chr8_2:11768356-11768375 Msa1234430:intron 40.0%
CAAACTATTCACTGATCCCA+TGG - chr8_2:11768375-11768394 None:intergenic 40.0%
TGGGATCAGTGAATAGTTTG+TGG + chr8_2:11768375-11768394 Msa1234430:intron 40.0%
!! CGTGTTTTTGCTGAACTCAT+TGG + chr8_2:11768530-11768549 Msa1234430:intron 40.0%
TGACATTTCAGAACCTAAGC+AGG - chr8_2:11768736-11768755 None:intergenic 40.0%
AAATGTCAGTATGCTGTTCG+AGG + chr8_2:11768748-11768767 Msa1234430:CDS 40.0%
AGAGATTGTTACACTTGCTC+AGG + chr8_2:11768771-11768790 Msa1234430:intron 40.0%
CCTTCACAGATTGCCTAATA+TGG - chr8_2:11768897-11768916 None:intergenic 40.0%
CCATATTAGGCAATCTGTGA+AGG + chr8_2:11768894-11768913 Msa1234430:intron 40.0%
AAACATGTCATTGCGGTCTA+TGG - chr8_2:11768928-11768947 None:intergenic 40.0%
TCTATGAAATGTGCCAAGTC+AGG - chr8_2:11769001-11769020 None:intergenic 40.0%
ATAGCTAAAAACACCTGCCA+CGG + chr8_2:11769025-11769044 Msa1234430:intron 40.0%
!! ATATTCTACTCAAAGCACCG+TGG - chr8_2:11769045-11769064 None:intergenic 40.0%
GAACTTGCAAAAAGCTTTGC+AGG + chr8_2:11769145-11769164 Msa1234430:intron 40.0%
AAACGAATGAGCATCTGGAT+TGG - chr8_2:11769171-11769190 None:intergenic 40.0%
TCATCAAACGAATGAGCATC+TGG - chr8_2:11769176-11769195 None:intergenic 40.0%
AGATGCTCATTCGTTTGATG+AGG + chr8_2:11769175-11769194 Msa1234430:CDS 40.0%
GATGCTATAAAGCTCCTGAT+AGG + chr8_2:11769278-11769297 Msa1234430:intron 40.0%
GTTGTCATGACATATCCTAG+AGG - chr8_2:11769389-11769408 None:intergenic 40.0%
AATGGCGTGCTTCTATCTTT+CGG + chr8_2:11769715-11769734 Msa1234430:intron 40.0%
ATGCAGCAGGTTCATTTCAT+TGG - chr8_2:11769760-11769779 None:intergenic 40.0%
CTGAAGAAAATCTATGCAGC+AGG - chr8_2:11769773-11769792 None:intergenic 40.0%
ATTGGAAATCCTCAGTCTCT+GGG + chr8_2:11769886-11769905 Msa1234430:CDS 40.0%
GGAAAAAAGTAATTGGCTGC+TGG - chr8_2:11769912-11769931 None:intergenic 40.0%
!!! GCCAATTACTTTTTTCCGAG+AGG + chr8_2:11769915-11769934 Msa1234430:CDS 40.0%
! ATGTGACTATCCAGCTCTTT+TGG + chr8_2:11770034-11770053 Msa1234430:CDS 40.0%
!! TCACTTTTGTCCAAAAGAGC+TGG - chr8_2:11770047-11770066 None:intergenic 40.0%
! AAAAGCGTATCGTGGAACAA+TGG - chr8_2:11770411-11770430 None:intergenic 40.0%
AAAACCAATGTTGTCAACGG+TGG - chr8_2:11770521-11770540 None:intergenic 40.0%
AATGAAAGGTCAACCACACA+GGG - chr8_2:11770580-11770599 None:intergenic 40.0%
AAATGAAAGGTCAACCACAC+AGG - chr8_2:11770581-11770600 None:intergenic 40.0%
CTGATTCAATAGAGAGAGCT+TGG + chr8_2:11770612-11770631 Msa1234430:intron 40.0%
CCCCTTTATTATTCACTGTG+AGG + chr8_2:11770729-11770748 Msa1234430:intron 40.0%
AAACCCTGAATACCCTGATA+TGG - chr8_2:11770776-11770795 None:intergenic 40.0%
GCAAATTGGAAACATACAGC+TGG - chr8_2:11770884-11770903 None:intergenic 40.0%
TAATTGAGGCTGAGTAGAGA+GGG - chr8_2:11771079-11771098 None:intergenic 40.0%
ATCTTGATGAAGCAACTGGT+TGG + chr8_2:11771610-11771629 Msa1234430:CDS 40.0%
TCTTGATGAAGCAACTGGTT+GGG + chr8_2:11771611-11771630 Msa1234430:CDS 40.0%
ATCTGAACTCAAGAAGCAGT+TGG + chr8_2:11771644-11771663 Msa1234430:CDS 40.0%
GCTTTAGCTGTTATAAACCC+AGG + chr8_2:11771699-11771718 Msa1234430:CDS 40.0%
GGAATTTCTGTCATGTCTGT+AGG + chr8_2:11771825-11771844 Msa1234430:intron 40.0%
TCTTGCTGAGGAAAATCAAC+GGG + chr8_2:11771849-11771868 Msa1234430:CDS 40.0%
!!! TTTGGTTCTTTTGGCTGATG+AGG + chr8_2:11771900-11771919 Msa1234430:CDS 40.0%
ATTCTGATACACTATAGCGG+CGG - chr8_2:11772043-11772062 None:intergenic 40.0%
! AACAATAGTGCCGCTATTTG+AGG - chr8_2:11772114-11772133 None:intergenic 40.0%
AAGAATGCTATTGTGCCACA+TGG - chr8_2:11772212-11772231 None:intergenic 40.0%
! AGAGACATTTTCAATCGGTG+TGG - chr8_2:11772453-11772472 None:intergenic 40.0%
AAATGTCTCTGTTTGGCATC+AGG + chr8_2:11772463-11772482 Msa1234430:intron 40.0%
! AATTTGTTCCCTCACATCTG+GGG - chr8_2:11772542-11772561 None:intergenic 40.0%
CCATTGAAGACAAAGAACGG+AGG - chr8_2:11767497-11767516 None:intergenic 45.0%
CCTCCGTTCTTTGTCTTCAA+TGG + chr8_2:11767494-11767513 Msa1234430:CDS 45.0%
! TTTTGAGCGGTAACAGGGAA+AGG - chr8_2:11767531-11767550 None:intergenic 45.0%
GTGGTGTGGTTGTTGATCAA+AGG + chr8_2:11768143-11768162 Msa1234430:intron 45.0%
TCTGTTTGGTTGTGTGACTG+AGG + chr8_2:11768280-11768299 Msa1234430:intron 45.0%
! AAATTGTGGCCTTGGCAGAA+TGG + chr8_2:11768851-11768870 Msa1234430:intron 45.0%
AAAGCTCCTGATAGGGTCAT+TGG + chr8_2:11769286-11769305 Msa1234430:intron 45.0%
TCCTGATAGGGTCATTGGAA+GGG + chr8_2:11769291-11769310 Msa1234430:intron 45.0%
TCTCTGTGTGGGCTTATAGT+AGG + chr8_2:11769320-11769339 Msa1234430:intron 45.0%
ATGGCGTGCTTCTATCTTTC+GGG + chr8_2:11769716-11769735 Msa1234430:intron 45.0%
CATTGGAAATCCTCAGTCTC+TGG + chr8_2:11769885-11769904 Msa1234430:CDS 45.0%
! GTGAAACACAGGGTTTGTTC+AGG + chr8_2:11770063-11770082 Msa1234430:intron 45.0%
ATGTTGTCAACGGTGGATCA+CGG - chr8_2:11770514-11770533 None:intergenic 45.0%
TGATCCACCGTTGACAACAT+TGG + chr8_2:11770514-11770533 Msa1234430:intron 45.0%
AGAGAGAGCTTGGCAAATTG+TGG + chr8_2:11770622-11770641 Msa1234430:intron 45.0%
CAAATTGTGGATCAGATCCC+TGG + chr8_2:11770635-11770654 Msa1234430:CDS 45.0%
TGGTGCCTATAGTCATAGTC+AGG + chr8_2:11770667-11770686 Msa1234430:CDS 45.0%
GTAATTGAGGCTGAGTAGAG+AGG - chr8_2:11771080-11771099 None:intergenic 45.0%
AGTGCTATAGTTCCGCAGTT+TGG + chr8_2:11771281-11771300 Msa1234430:intron 45.0%
CTACACTCAGTACCAAACTG+CGG - chr8_2:11771296-11771315 None:intergenic 45.0%
AAACTGCTGCTATAGCGTAG+CGG + chr8_2:11771318-11771337 Msa1234430:intron 45.0%
! GTGTTGTCAATTGCGGATTG+TGG - chr8_2:11771366-11771385 None:intergenic 45.0%
CAATCCGCAATTGACAACAC+TGG + chr8_2:11771366-11771385 Msa1234430:intron 45.0%
CTTGATGAAGCAACTGGTTG+GGG + chr8_2:11771612-11771631 Msa1234430:CDS 45.0%
TTGATGAAGCAACTGGTTGG+GGG + chr8_2:11771613-11771632 Msa1234430:CDS 45.0%
TTGGAAGATGCCAAGTCCAA+GGG + chr8_2:11771663-11771682 Msa1234430:CDS 45.0%
ATAAACCCAGGCAATCCAAC+AGG + chr8_2:11771711-11771730 Msa1234430:CDS 45.0%
TAAACCCAGGCAATCCAACA+GGG + chr8_2:11771712-11771731 Msa1234430:CDS 45.0%
ATGTCTGTAGGTTCTTGCTG+AGG + chr8_2:11771837-11771856 Msa1234430:intron 45.0%
AGCGGCACTATTGTTTACAG+CGG + chr8_2:11772119-11772138 Msa1234430:intron 45.0%
!! AAGAAGGTATCTCGGTCCAT+GGG + chr8_2:11772307-11772326 Msa1234430:CDS 45.0%
!! TACCGACTTACCTTTGGAGA+CGG - chr8_2:11772371-11772390 None:intergenic 45.0%
TGTTTGGCATCAGGCTATCA+TGG + chr8_2:11772472-11772491 Msa1234430:intron 45.0%
GTTTGGCATCAGGCTATCAT+GGG + chr8_2:11772473-11772492 Msa1234430:intron 45.0%
TTTGGCATCAGGCTATCATG+GGG + chr8_2:11772474-11772493 Msa1234430:intron 45.0%
TGGAAAGCGAGGAGGTTATA+TGG + chr8_2:11772501-11772520 Msa1234430:CDS 45.0%
AAAGCGAGGAGGTTATATGG+AGG + chr8_2:11772504-11772523 Msa1234430:CDS 45.0%
GAGGTTATATGGAGGTGACT+GGG + chr8_2:11772512-11772531 Msa1234430:CDS 45.0%
AATCCGCTGCAGACAGATTC+AGG + chr8_2:11767406-11767425 Msa1234430:CDS 50.0%
TTGGTTGTGTGACTGAGGAC+TGG + chr8_2:11768285-11768304 Msa1234430:intron 50.0%
ATGTCATTGCGGTCTATGGC+AGG - chr8_2:11768924-11768943 None:intergenic 50.0%
CTCCTGATAGGGTCATTGGA+AGG + chr8_2:11769290-11769309 Msa1234430:intron 50.0%
ACCCTTCCAATGACCCTATC+AGG - chr8_2:11769295-11769314 None:intergenic 50.0%
GATAGGGTCATTGGAAGGGT+TGG + chr8_2:11769295-11769314 Msa1234430:intron 50.0%
AAGGGTTGGACTCTCTGTGT+GGG + chr8_2:11769309-11769328 Msa1234430:intron 50.0%
! GGACACAGTCCAAAAGTGTG+AGG + chr8_2:11769357-11769376 Msa1234430:intron 50.0%
CACACATTCAGCGTCTCACA+CGG + chr8_2:11769463-11769482 Msa1234430:intron 50.0%
TTACGTGATGCAATAGCCGC+TGG + chr8_2:11770794-11770813 Msa1234430:CDS 50.0%
TGCAATAGCCGCTGGAATTG+AGG + chr8_2:11770802-11770821 Msa1234430:CDS 50.0%
ATCACGCTCCTCAATTCCAG+CGG - chr8_2:11770813-11770832 None:intergenic 50.0%
!! TAGAGAGGGTACTGAGGGAT+GGG - chr8_2:11771065-11771084 None:intergenic 50.0%
!! CTGAGTAGAGAGGGTACTGA+GGG - chr8_2:11771070-11771089 None:intergenic 50.0%
TCAGCCTCAATTACCCTCCA+TGG + chr8_2:11771086-11771105 Msa1234430:CDS 50.0%
ACTTTACCAGATGGCCACCA+TGG - chr8_2:11771106-11771125 None:intergenic 50.0%
GTTGGAAGATGCCAAGTCCA+AGG + chr8_2:11771662-11771681 Msa1234430:CDS 50.0%
AACACTGATGCCCTTGGACT+TGG - chr8_2:11771676-11771695 None:intergenic 50.0%
!! AGTCCAAGGGCATCAGTGTT+AGG + chr8_2:11771676-11771695 Msa1234430:CDS 50.0%
!! GTCCAAGGGCATCAGTGTTA+GGG + chr8_2:11771677-11771696 Msa1234430:CDS 50.0%
!! CAAGAAGGTATCTCGGTCCA+TGG + chr8_2:11772306-11772325 Msa1234430:CDS 50.0%
GTATCTCGGTCCATGGGATA+CGG + chr8_2:11772313-11772332 Msa1234430:CDS 50.0%
ATCATTGTCGCCGTATCCCA+TGG - chr8_2:11772326-11772345 None:intergenic 50.0%
TCTTTCCAGTCCGTCTCCAA+AGG + chr8_2:11772358-11772377 Msa1234430:CDS 50.0%
! ACTTACCTTTGGAGACGGAC+TGG - chr8_2:11772366-11772385 None:intergenic 50.0%
GTCCGTCTCCAAAGGTAAGT+CGG + chr8_2:11772366-11772385 Msa1234430:intron 50.0%
GGAGGTTATATGGAGGTGAC+TGG + chr8_2:11772511-11772530 Msa1234430:CDS 50.0%
! TGGGTTTTCCCCAGATGTGA+GGG + chr8_2:11772531-11772550 Msa1234430:CDS 50.0%
GTGCCTGAATCTGTCTGCAG+CGG - chr8_2:11767412-11767431 None:intergenic 55.0%
AAGAACGGAGGGGAGAAGGA+TGG - chr8_2:11767485-11767504 None:intergenic 55.0%
GACAAAGAACGGAGGGGAGA+AGG - chr8_2:11767489-11767508 None:intergenic 55.0%
!! TCTACTCAAAGCACCGTGGC+AGG - chr8_2:11769041-11769060 None:intergenic 55.0%
GAAGGGTTGGACTCTCTGTG+TGG + chr8_2:11769308-11769327 Msa1234430:intron 55.0%
! AGGTCGCAGCCTCACACTTT+TGG - chr8_2:11769369-11769388 None:intergenic 55.0%
GCTACGGCTCTCTAGTGTAG+TGG + chr8_2:11770370-11770389 Msa1234430:intron 55.0%
CAGATCCCTGGAAGAGCAAC+TGG + chr8_2:11770647-11770666 Msa1234430:CDS 55.0%
AGGCACCAGTTGCTCTTCCA+GGG - chr8_2:11770655-11770674 None:intergenic 55.0%
TAGGCACCAGTTGCTCTTCC+AGG - chr8_2:11770656-11770675 None:intergenic 55.0%
! GCTGGAATTGAGGAGCGTGA+TGG + chr8_2:11770812-11770831 Msa1234430:CDS 55.0%
!! GTAGAGAGGGTACTGAGGGA+TGG - chr8_2:11771066-11771085 None:intergenic 55.0%
!! GCTGAGTAGAGAGGGTACTG+AGG - chr8_2:11771071-11771090 None:intergenic 55.0%
GCCTCAATTACCCTCCATGG+TGG + chr8_2:11771089-11771108 Msa1234430:CDS 55.0%
GCCACCATGGAGGGTAATTG+AGG - chr8_2:11771093-11771112 None:intergenic 55.0%
TACCAGATGGCCACCATGGA+GGG - chr8_2:11771102-11771121 None:intergenic 55.0%
TTACCAGATGGCCACCATGG+AGG - chr8_2:11771103-11771122 None:intergenic 55.0%
AGCCCTAACACTGATGCCCT+TGG - chr8_2:11771682-11771701 None:intergenic 55.0%
TTGTAGCTCACCTGCCCTGT+TGG - chr8_2:11771729-11771748 None:intergenic 55.0%
TCAGGCTATCATGGGGAGTG+TGG + chr8_2:11772481-11772500 Msa1234430:intron 55.0%
! CTGGGTTTTCCCCAGATGTG+AGG + chr8_2:11772530-11772549 Msa1234430:CDS 55.0%
! GCCTTGGCAGAATGGTGTCG+CGG + chr8_2:11768859-11768878 Msa1234430:intron 60.0%
TCCGCGACACCATTCTGCCA+AGG - chr8_2:11768863-11768882 None:intergenic 60.0%
AGTGTGAGGCTGCGACCTCT+AGG + chr8_2:11769371-11769390 Msa1234430:intron 60.0%
TACCCTCCATGGTGGCCATC+TGG + chr8_2:11771097-11771116 Msa1234430:CDS 60.0%
TGAAGCAACTGGTTGGGGGC+TGG + chr8_2:11771617-11771636 Msa1234430:CDS 60.0%
CCTGCCCTGTTGGATTGCCT+GGG - chr8_2:11771719-11771738 None:intergenic 60.0%
ACCTGCCCTGTTGGATTGCC+TGG - chr8_2:11771720-11771739 None:intergenic 60.0%
! CATGGGGAGTGTGGAAAGCG+AGG + chr8_2:11772490-11772509 Msa1234430:CDS 60.0%
CCCAGGCAATCCAACAGGGC+AGG + chr8_2:11771716-11771735 Msa1234430:CDS 65.0%
! GGGGAGTGTGGAAAGCGAGG+AGG + chr8_2:11772493-11772512 Msa1234430:CDS 65.0%
GGCTGCTGGCCCAGAGACTG+AGG - chr8_2:11769898-11769917 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 11767399 11772600 11767399 ID=Msa1234430;Name=Msa1234430
chr8_2 mRNA 11767399 11772600 11767399 ID=Msa1234430-mRNA-1;Parent=Msa1234430;Name=Msa1234430-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0.81|0.83|12|0|367
chr8_2 exon 11767399 11767563 11767399 ID=Msa1234430-mRNA-1:exon:4570;Parent=Msa1234430-mRNA-1
chr8_2 exon 11768742 11768777 11768742 ID=Msa1234430-mRNA-1:exon:4571;Parent=Msa1234430-mRNA-1
chr8_2 exon 11769146 11769196 11769146 ID=Msa1234430-mRNA-1:exon:4572;Parent=Msa1234430-mRNA-1
chr8_2 exon 11769871 11769936 11769871 ID=Msa1234430-mRNA-1:exon:4573;Parent=Msa1234430-mRNA-1
chr8_2 exon 11770023 11770074 11770023 ID=Msa1234430-mRNA-1:exon:4574;Parent=Msa1234430-mRNA-1
chr8_2 exon 11770624 11770688 11770624 ID=Msa1234430-mRNA-1:exon:4575;Parent=Msa1234430-mRNA-1
chr8_2 exon 11770782 11770886 11770782 ID=Msa1234430-mRNA-1:exon:4576;Parent=Msa1234430-mRNA-1
chr8_2 exon 11771008 11771118 11771008 ID=Msa1234430-mRNA-1:exon:4577;Parent=Msa1234430-mRNA-1
chr8_2 exon 11771600 11771737 11771600 ID=Msa1234430-mRNA-1:exon:4578;Parent=Msa1234430-mRNA-1
chr8_2 exon 11771847 11771921 11771847 ID=Msa1234430-mRNA-1:exon:4579;Parent=Msa1234430-mRNA-1
chr8_2 exon 11772259 11772379 11772259 ID=Msa1234430-mRNA-1:exon:4580;Parent=Msa1234430-mRNA-1
chr8_2 exon 11772485 11772600 11772485 ID=Msa1234430-mRNA-1:exon:4581;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11767399 11767563 11767399 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11768742 11768777 11768742 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11769146 11769196 11769146 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11769871 11769936 11769871 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11770023 11770074 11770023 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11770624 11770688 11770624 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11770782 11770886 11770782 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11771008 11771118 11771008 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11771600 11771737 11771600 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11771847 11771921 11771847 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11772259 11772379 11772259 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
chr8_2 CDS 11772485 11772600 11772485 ID=Msa1234430-mRNA-1:cds;Parent=Msa1234430-mRNA-1
Gene Sequence

>Msa1234430

ATGCGGAAATCCGCTGCAGACAGATTCAGGCACCTTTTCAACCGTTCACTTGTTTTTGTTCGGAATCAAAATCAACAATATCACCATCCTTCTCCCCTCCGTTCTTTGTCTTCAATGGCTTCTGATTCACCTTTCCCTGTTACCGCTCAAAATATTAACCCTCAGGTTCTGAAATGTCAGTATGCTGTTCGAGGAGAGATTAACTTGCAAAAAGCTTTGCAGGCCAATCCAGATGCTCATTCGTTTGATGAGATAATTTACTGCAACATTGGAAATCCTCAGTCTCTGGGCCAGCAGCCAATTACTTTTTTCCGAGAGGTTCTTGCTTTATGTGACTATCCAGCTCTTTTGGACAAAAGTGAAACACAGGAGAGAGCTTGGCAAATTGTGGATCAGATCCCTGGAAGAGCAACTGGTGCCTATAGTCATAGTCAGGGTATTCAGGGTTTACGTGATGCAATAGCCGCTGGAATTGAGGAGCGTGATGGTTTTCCTTGTAATGCCAATGACATTTTCTTGACAGATGGTGCAAGCCCAGCTGTCCATATGATGATGCAATTACTCATTAGATCAGAAAAGGATGGTATTTTGTGTCCCATCCCTCAGTACCCTCTCTACTCAGCCTCAATTACCCTCCATGGTGGCCATCTGGTACCATATTATCTTGATGAAGCAACTGGTTGGGGGCTGGAAATATCTGAACTCAAGAAGCAGTTGGAAGATGCCAAGTCCAAGGGCATCAGTGTTAGGGCTTTAGCTGTTATAAACCCAGGCAATCCAACAGGGCAGGTTCTTGCTGAGGAAAATCAACGGGCTATAGTAGAATTTTGCAAGAAAGAAGGTTTGGTTCTTTTGGCTGATGAGGTTTATCAAGAAAACGTTTATGTTCCTGAGAAGAAATTTCACTCTTTCAAGAAGGTATCTCGGTCCATGGGATACGGCGACAATGATATCTGCTTAGTATCTTTCCAGTCCGTCTCCAAAGGCTATCATGGGGAGTGTGGAAAGCGAGGAGGTTATATGGAGGTGACTGGGTTTTCCCCAGATGTGAGGGAACAAATTTATAAAGTGGCATCTGTGAATCTTTGTTCTAACATCACT

Protein sequence

>Msa1234430

MRKSAADRFRHLFNRSLVFVRNQNQQYHHPSPLRSLSSMASDSPFPVTAQNINPQVLKCQYAVRGEINLQKALQANPDAHSFDEIIYCNIGNPQSLGQQPITFFREVLALCDYPALLDKSETQERAWQIVDQIPGRATGAYSHSQGIQGLRDAIAAGIEERDGFPCNANDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYSASITLHGGHLVPYYLDEATGWGLEISELKKQLEDAKSKGISVRALAVINPGNPTGQVLAEENQRAIVEFCKKEGLVLLADEVYQENVYVPEKKFHSFKKVSRSMGYGDNDICLVSFQSVSKGYHGECGKRGGYMEVTGFSPDVREQIYKVASVNLCSNIT