AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1046140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046140 MtrunA17_Chr7g0214101 99.723 361 1 0 1 361 1 361 0.0 737
Msa1046140 MtrunA17_Chr8g0376411 39.665 358 205 2 2 352 51 404 1.51e-88 272
Msa1046140 MtrunA17_Chr3g0116801 41.104 326 188 1 27 352 82 403 2.74e-88 271
Msa1046140 MtrunA17_Chr4g0009631 34.925 335 202 6 23 348 33 360 6.29e-64 207
Msa1046140 MtrunA17_Chr7g0216531 75.000 100 16 2 158 248 12 111 3.46e-41 140
Msa1046140 MtrunA17_Chr7g0216531 57.143 56 24 0 84 139 2 57 2.87e-12 62.8
Msa1046140 MtrunA17_Chr7g0216541 95.122 41 2 0 160 200 6 46 1.46e-21 86.7
Msa1046140 MtrunA17_Chr3g0138171 27.468 233 142 8 66 290 421 634 3.01e-11 64.7
Msa1046140 MtrunA17_Chr8g0367181 26.587 252 167 8 69 317 427 663 3.94e-11 64.3
Msa1046140 MtrunA17_Chr8g0367201 26.587 252 167 8 69 317 427 663 4.00e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1046140 AT5G50850.1 86.188 362 42 2 1 354 1 362 0.0 639
Msa1046140 AT1G30120.1 40.456 351 202 2 5 352 60 406 2.23e-90 277
Msa1046140 AT2G34590.1 42.042 333 185 2 22 352 80 406 2.05e-89 275
Msa1046140 AT1G55510.1 36.337 344 210 5 8 348 10 347 6.63e-70 223
Msa1046140 AT3G13450.1 35.224 335 210 4 15 348 25 353 1.64e-68 219
Msa1046140 AT4G15560.1 24.727 275 187 7 19 290 390 647 3.40e-12 68.2
Msa1046140 AT3G21500.3 26.549 226 151 6 68 290 392 605 3.19e-11 65.1
Msa1046140 AT3G21500.1 26.549 226 151 6 68 290 391 604 3.68e-11 65.1
Msa1046140 AT3G21500.2 26.549 226 151 6 68 290 392 605 4.14e-11 64.7

Find 129 sgRNAs with CRISPR-Local

Find 532 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACAAAGGTTATTAATTTA+AGG 0.162693 7_2:-6528296 Msa1046140:intron
TTTATAATTCCCAGCATATC+TGG 0.227146 7_2:-6527676 Msa1046140:three_prime_UTR
TCATGTCTTGGTTAGTTCTT+TGG 0.228149 7_2:-6527863 Msa1046140:three_prime_UTR
AATATGCAGGCTGGGTTTAC+TGG 0.232671 7_2:-6531170 Msa1046140:intron
ATGCCCTGGGTTGAAAGTTT+TGG 0.247026 7_2:-6529146 Msa1046140:CDS
AGAACTAGATCGATTAATTT+AGG 0.262380 7_2:+6527894 None:intergenic
GTTTACTTAAAGCTGCTATA+AGG 0.289090 7_2:-6529096 Msa1046140:CDS
TCTTGGTATGGCTCATGCCC+TGG 0.309803 7_2:-6529160 Msa1046140:CDS
TCACCCATCAAGAAGACTTT+AGG 0.312229 7_2:+6534688 None:intergenic
AAATGTGTAGGATAATAATT+TGG 0.314166 7_2:+6535462 None:intergenic
TTAGATTTCCAAGGGACTAT+TGG 0.314457 7_2:-6532811 Msa1046140:intron
AAGTTGGCCTTTGCAGTTTC+CGG 0.316568 7_2:+6527510 None:intergenic
GGAGTTGGTGCTGCTTACTA+TGG 0.330288 7_2:-6531143 Msa1046140:CDS
CATGCCTTATGCAGCAAATC+TGG 0.332687 7_2:-6528091 Msa1046140:CDS
TCAAGAACTTCGGCAGAAAC+AGG 0.334442 7_2:+6528908 None:intergenic
CAGAAAAGAATAATGAATTC+TGG 0.338933 7_2:-6535381 Msa1046140:five_prime_UTR
GAAGACTGAAAATTAAATTC+TGG 0.349384 7_2:-6527424 Msa1046140:three_prime_UTR
AATGGTTGGCTTTGCTCTAA+AGG 0.349744 7_2:-6528701 Msa1046140:intron
TCATTGATTCTGTCAGGCTT+TGG 0.355325 7_2:-6527770 Msa1046140:three_prime_UTR
TCAAGGAAAACTACAGGATC+AGG 0.356678 7_2:+6529070 None:intergenic
CTTTCCAGATTTGCTGCATA+AGG 0.357769 7_2:+6528087 None:intergenic
CAGGCTGGGTTTACTGGGAT+TGG 0.358479 7_2:-6531164 Msa1046140:CDS
TAATTTGTTTGCATTGCGTT+TGG 0.365019 7_2:-6527401 Msa1046140:three_prime_UTR
TCCGATGGGAAGGCAGAAAC+TGG 0.372273 7_2:+6528883 None:intergenic
TCTCTCTTCTTCCGCTAAAC+AGG 0.373627 7_2:-6534847 Msa1046140:intron
AATGTACCTATTGTATTTAG+AGG 0.374366 7_2:-6529384 Msa1046140:CDS
GCACCGGTGGAGAGAATTGC+CGG 0.381050 7_2:-6528126 Msa1046140:CDS
GGGTTTACTGGGATTGGAGT+TGG 0.388394 7_2:-6531158 Msa1046140:CDS
AAGGAATCAATCAAGATGTT+AGG 0.392916 7_2:-6535011 Msa1046140:exon
CGAGCATCTTCAGATGAATA+TGG 0.394225 7_2:+6529121 None:intergenic
TAAGATCAAATCGACGTGAT+AGG 0.407286 7_2:+6527279 None:intergenic
TGCAGCAAATCTGGAAAGAT+TGG 0.409248 7_2:-6528082 Msa1046140:CDS
TTATGCAGTGTTATGCATCT+TGG 0.410920 7_2:-6529177 Msa1046140:intron
AATGGTGCTGCTGCTGGTGT+TGG 0.415359 7_2:-6529357 Msa1046140:CDS
TCAGAGTTGGTGAGTATCAA+TGG 0.422592 7_2:+6535294 None:intergenic
AATTTGTTTGCATTGCGTTT+GGG 0.423865 7_2:-6527400 Msa1046140:three_prime_UTR
TCTGTCATCGAGGAGAGTTT+TGG 0.424908 7_2:-6528159 Msa1046140:CDS
TTTCCTGACAGAAGCATTGA+TGG 0.431540 7_2:+6528248 None:intergenic
AAATCAAATTACATGTCTGC+TGG 0.434500 7_2:-6529414 Msa1046140:CDS
TTTACTTAAAGCTGCTATAA+GGG 0.435542 7_2:-6529095 Msa1046140:CDS
GAACATCCTCCCAGATATGC+TGG 0.451781 7_2:+6527666 None:intergenic
TTGGGTCCTCTAAATACAAT+AGG 0.453035 7_2:+6529378 None:intergenic
CGATCCTAAAGTCTTCTTGA+TGG 0.454138 7_2:-6534692 Msa1046140:CDS
TCTCAGAAGCAGGCTTATAC+CGG 0.458262 7_2:+6527355 None:intergenic
GGACCCAATGGTGCTGCTGC+TGG 0.458395 7_2:-6529363 Msa1046140:CDS
TTCAACTGTCACCAGTCTGT+TGG 0.461416 7_2:+6528224 None:intergenic
CTTGGTATGGCTCATGCCCT+GGG 0.468165 7_2:-6529159 Msa1046140:CDS
TTGAATTGTGGCTGTTATCC+CGG 0.472385 7_2:-6527374 Msa1046140:three_prime_UTR
AGGTTGTGGTGGAAATTTGA+GGG 0.475922 7_2:+6527813 None:intergenic
AATGTCATAAACTCCACAAC+AGG 0.479865 7_2:+6531113 None:intergenic
GAAAGTGTGAAAAGGCAGAT+TGG 0.484065 7_2:-6527256 Msa1046140:three_prime_UTR
AAGGGACTATTGGAGAAGTA+TGG 0.485928 7_2:-6532801 Msa1046140:CDS
ATATGCAGGCTGGGTTTACT+GGG 0.487916 7_2:-6531169 Msa1046140:intron
CAGATTTGCTGCATAAGGCA+TGG 0.501282 7_2:+6528092 None:intergenic
GAGATGTCTGAATGCGGAAA+AGG 0.501518 7_2:+6534866 None:intergenic
GACATTTAACTTCTCCATGC+AGG 0.502562 7_2:-6531096 Msa1046140:intron
CAGTGTTATGCATCTTGGTA+TGG 0.510583 7_2:-6529172 Msa1046140:CDS
ACACCAGCAGCAGCACCATT+GGG 0.513248 7_2:+6529360 None:intergenic
GCCCCGGCAATTCTCTCCAC+CGG 0.513647 7_2:+6528123 None:intergenic
CCACCATCAATGCTTCTGTC+AGG 0.514146 7_2:-6528251 Msa1046140:CDS
ATGCCACAGATCTGTGCCTA+TGG 0.514735 7_2:-6527926 Msa1046140:CDS
CTTAACAGATTGAGAGAGAA+GGG 0.517313 7_2:-6528753 Msa1046140:intron
TGATCTTAGAAAGTGTGAAA+AGG 0.521086 7_2:-6527264 Msa1046140:three_prime_UTR
ATTTAGGCAGTTGCAGCCAT+AGG 0.522619 7_2:+6527910 None:intergenic
TTATAATTCCCAGCATATCT+GGG 0.527240 7_2:-6527675 Msa1046140:three_prime_UTR
AACACCAGCAGCAGCACCAT+TGG 0.529263 7_2:+6529359 None:intergenic
TCCTTCAATTTAGATTTCCA+AGG 0.535088 7_2:-6532820 Msa1046140:intron
GGAGTGTCGAGAACCCTCTC+AGG 0.535813 7_2:+6532777 None:intergenic
CAAGATATATTTAACTGTGT+GGG 0.539303 7_2:-6527459 Msa1046140:three_prime_UTR
AGATTTGCTGCATAAGGCAT+GGG 0.544500 7_2:+6528093 None:intergenic
ATACTTCTCCAATAGTCCCT+TGG 0.545557 7_2:+6532803 None:intergenic
TCCAGTTTCTGCCTTCCCAT+CGG 0.546005 7_2:-6528884 Msa1046140:CDS
GGGTTTCCTCAGCATGGTGT+TGG 0.548315 7_2:-6528198 Msa1046140:CDS
TTATAGGTTGGAGAATATCA+AGG 0.548317 7_2:-6532946 Msa1046140:intron
AGAATATCAAGGTGCATACA+AGG 0.548665 7_2:-6532935 Msa1046140:intron
GGAAAGATTGGCTGTCCCAC+AGG 0.549518 7_2:-6528070 Msa1046140:intron
GATCCTAAAGTCTTCTTGAT+GGG 0.550617 7_2:-6534691 Msa1046140:CDS
CAACAAACAAACCTGTTTAG+CGG 0.555702 7_2:+6534836 None:intergenic
AGACTGGTGACAGTTGAAGA+AGG 0.558832 7_2:-6528219 Msa1046140:CDS
ACAAGATATATTTAACTGTG+TGG 0.565114 7_2:-6527460 Msa1046140:three_prime_UTR
GCTTAACAGATTGAGAGAGA+AGG 0.566225 7_2:-6528754 Msa1046140:intron
AAAAGGATGCACTAAAGTAT+GGG 0.566640 7_2:+6527330 None:intergenic
CCTTCAATTTAGATTTCCAA+GGG 0.567285 7_2:-6532819 Msa1046140:intron
AATCAAATTACATGTCTGCT+GGG 0.569255 7_2:-6529413 Msa1046140:CDS
GAGGTTGTGGTGGAAATTTG+AGG 0.570350 7_2:+6527812 None:intergenic
AGTCTTCTTGATGGGTGAAG+AGG 0.572562 7_2:-6534683 Msa1046140:intron
CTATGGTCTAAAGCCTGTTG+TGG 0.572678 7_2:-6531126 Msa1046140:CDS
GGAACGAAAAGTTTCAGAGT+TGG 0.575482 7_2:+6535281 None:intergenic
AGTATGGGTATCTCAGAAGC+AGG 0.580296 7_2:+6527345 None:intergenic
CTCAGAAGCAGGCTTATACC+GGG 0.584510 7_2:+6527356 None:intergenic
AACATCCTCCCAGATATGCT+GGG 0.589448 7_2:+6527667 None:intergenic
CAAGAACTTCGGCAGAAACA+GGG 0.590845 7_2:+6528909 None:intergenic
GTAGAGGAATTCGAATACTT+AGG 0.593492 7_2:+6535344 None:intergenic
GAAACTGGAATCAAGAACTT+CGG 0.593707 7_2:+6528898 None:intergenic
GCGTTTGGGACTTTGAATTG+TGG 0.594726 7_2:-6527386 Msa1046140:three_prime_UTR
GTTAGGTGTTATAAGAAACA+AGG 0.596856 7_2:-6534994 Msa1046140:intron
CCTGACAGAAGCATTGATGG+TGG 0.602274 7_2:+6528251 None:intergenic
GTGCCAAAACTTTCAACCCA+GGG 0.603446 7_2:+6529143 None:intergenic
CAAGGAAAACTACAGGATCA+GGG 0.604349 7_2:+6529071 None:intergenic
GACTGGTGACAGTTGAAGAA+GGG 0.606152 7_2:-6528218 Msa1046140:CDS
GAGATAAACACTAACCTGCA+TGG 0.607390 7_2:+6531082 None:intergenic
TGTCAGGAAAACCAACAGAC+TGG 0.614276 7_2:-6528235 Msa1046140:CDS
CAGCCATAGGCACAGATCTG+TGG 0.618473 7_2:+6527923 None:intergenic
TAGCATACCGGAAACTGCAA+AGG 0.619213 7_2:-6527517 Msa1046140:three_prime_UTR
AGGCATGGGAACATCAGCCC+CGG 0.619316 7_2:+6528107 None:intergenic
GGAGAAGTATGGTCCTGAGA+GGG 0.619724 7_2:-6532790 Msa1046140:CDS
ATTGTATTTAGAGGACCCAA+TGG 0.620504 7_2:-6529375 Msa1046140:CDS
GAAGAAGGGTTTCCTCAGCA+TGG 0.620750 7_2:-6528204 Msa1046140:CDS
ACTCAAAACAGCAAGCAAGT+TGG 0.621959 7_2:+6527494 None:intergenic
GGTGCCAAAACTTTCAACCC+AGG 0.622618 7_2:+6529142 None:intergenic
CATCAAGAAGACTTTAGGAT+CGG 0.623232 7_2:+6534693 None:intergenic
CCTTCCCATCGGAAAAGCAA+AGG 0.627357 7_2:-6528873 Msa1046140:intron
GCTGAGACACTAGCAAAGGA+AGG 0.630656 7_2:-6528418 Msa1046140:CDS
GGCTGCTGAGACACTAGCAA+AGG 0.630698 7_2:-6528422 Msa1046140:CDS
TTGATGGTGGCTCGATCAAG+CGG 0.636023 7_2:+6528264 None:intergenic
TGGTGGCTCGATCAAGCGGT+CGG 0.637314 7_2:+6528268 None:intergenic
CAAGAAGACTTTAGGATCGG+CGG 0.641433 7_2:+6534696 None:intergenic
TGGCTATCTTGATGCACCGG+TGG 0.641507 7_2:-6528139 Msa1046140:CDS
ACCGGTGGAGAGAATTGCCG+GGG 0.643645 7_2:-6528124 Msa1046140:CDS
TATTCATCTGAAGATGCTCG+TGG 0.654209 7_2:-6529118 Msa1046140:CDS
AAAGGAAGGAATCAGTGCTG+AGG 0.656553 7_2:-6528404 Msa1046140:intron
TGGAGAAGTATGGTCCTGAG+AGG 0.669482 7_2:-6532791 Msa1046140:CDS
TGTCTGAATGCGGAAAAGGA+AGG 0.671745 7_2:+6534870 None:intergenic
TGATAACAATGACACAAGAG+AGG 0.681703 7_2:-6527626 Msa1046140:three_prime_UTR
TCAGCGCCAACACCATGCTG+AGG 0.686283 7_2:+6528192 None:intergenic
AGAAGAGAGATGTCTGAATG+CGG 0.692625 7_2:+6534860 None:intergenic
TAATTCCCAGCATATCTGGG+AGG 0.718916 7_2:-6527672 Msa1046140:three_prime_UTR
AATCTGTGCATCTGTCATCG+AGG 0.746298 7_2:-6528169 Msa1046140:CDS
TCTCGACACTCCCATCACTG+AGG 0.757157 7_2:-6532766 Msa1046140:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATATTTA+TGG + chr7_2:6527802-6527821 None:intergenic 0.0%
!! AAAAAAATAGCAAAAATATT+CGG - chr7_2:6527318-6527337 Msa1046140:three_prime_UTR 10.0%
!!! AATATTTAGAATTTTTGTTA+TGG - chr7_2:6528742-6528761 Msa1046140:CDS 10.0%
!!! AAAAGATTTTATGAATTTTA+AGG - chr7_2:6530627-6530646 Msa1046140:intron 10.0%
!!! TTTAAAGAATTTAAAATTCT+TGG - chr7_2:6531236-6531255 Msa1046140:intron 10.0%
!!! TTTTCTTATAAAAAATGTGT+AGG + chr7_2:6527297-6527316 None:intergenic 15.0%
!!! TTTTTTTCAATTAAGATTAG+AGG - chr7_2:6528382-6528401 Msa1046140:intron 15.0%
!!! TTTTTTCAATTAAGATTAGA+GGG - chr7_2:6528383-6528402 Msa1046140:intron 15.0%
!!! GTTATTACAATATTTTAGTT+AGG + chr7_2:6529040-6529059 None:intergenic 15.0%
!! TATGTTCATTTCAATATAAT+TGG - chr7_2:6529308-6529327 Msa1046140:intron 15.0%
!!! TCATTTTCTAATGTTTATTT+TGG - chr7_2:6529765-6529784 Msa1046140:intron 15.0%
!! TATAAAAATGTAAACATGAA+AGG + chr7_2:6530089-6530108 None:intergenic 15.0%
!!! AATTTGTTCATTTTATTAGA+TGG + chr7_2:6530197-6530216 None:intergenic 15.0%
!!! TTTACATCATAAGATTTTAA+AGG - chr7_2:6530581-6530600 Msa1046140:intron 15.0%
!!! TAAGATTTTAAAGGATTTTA+TGG - chr7_2:6530590-6530609 Msa1046140:intron 15.0%
!!! TTTAATAAATTAGATTTTGC+TGG + chr7_2:6530986-6531005 None:intergenic 15.0%
!!! TGTTTTAAATTTTGATATTC+AGG - chr7_2:6532941-6532960 Msa1046140:CDS 15.0%
!!! TTATATATTTGAAGTAAAGT+CGG - chr7_2:6534233-6534252 Msa1046140:intron 15.0%
!!! AACTTTTTTTTACTTTGTTT+AGG - chr7_2:6534301-6534320 Msa1046140:intron 15.0%
!!! ATTATTTTTGGTAACATAAA+GGG + chr7_2:6534910-6534929 None:intergenic 15.0%
!!! AATTATTTTTGGTAACATAA+AGG + chr7_2:6534911-6534930 None:intergenic 15.0%
!! AAATGTGTAGGATAATAATT+TGG + chr7_2:6527285-6527304 None:intergenic 20.0%
!!! TGTTGAGATTTTTATTTCTT+AGG - chr7_2:6527663-6527682 Msa1046140:three_prime_UTR 20.0%
!!! TTTTTCAATTAAGATTAGAG+GGG - chr7_2:6528384-6528403 Msa1046140:intron 20.0%
!! TAAGCTATAAGCTAAAAAAT+GGG - chr7_2:6528554-6528573 Msa1046140:intron 20.0%
!! AACAAAAAATCTGAAAATGT+TGG + chr7_2:6528963-6528982 None:intergenic 20.0%
!! TATTATATATGTCGGAATAT+AGG + chr7_2:6529271-6529290 None:intergenic 20.0%
!!! TTTTGGTTGTATTTGATTAT+AGG - chr7_2:6529782-6529801 Msa1046140:intron 20.0%
!! AAATGAACAAATTCAAACTT+TGG - chr7_2:6530204-6530223 Msa1046140:intron 20.0%
!!! GTATTGGATTAAGATTTTAA+AGG - chr7_2:6530452-6530471 Msa1046140:intron 20.0%
!!! TCAGATTTAAAAGATTTTGT+AGG - chr7_2:6530497-6530516 Msa1046140:intron 20.0%
!!! ATTTTCAATTTGGATTTCAA+TGG - chr7_2:6530557-6530576 Msa1046140:intron 20.0%
!!! TTTTTATGATAGATAAAGAG+AGG - chr7_2:6530722-6530741 Msa1046140:intron 20.0%
!!! TTTTATGATAGATAAAGAGA+GGG - chr7_2:6530723-6530742 Msa1046140:intron 20.0%
!! TTAATTATGAAAAAGTCTTG+TGG + chr7_2:6531165-6531184 None:intergenic 20.0%
!! ATTCCTGGTAAAAAAAAAAA+AGG - chr7_2:6531496-6531515 Msa1046140:intron 20.0%
!!! AATCCTTTTTTTTTTTTACC+AGG + chr7_2:6531502-6531521 None:intergenic 20.0%
!! ATAATGTTCATTAAATATGC+AGG - chr7_2:6531561-6531580 Msa1046140:intron 20.0%
!!! TGTGTTAATTTTACATCTTT+TGG - chr7_2:6531721-6531740 Msa1046140:intron 20.0%
!! TGTATAATCATCATAAATTC+AGG - chr7_2:6532153-6532172 Msa1046140:intron 20.0%
!! GCAACAATAAAATTAAACAA+TGG - chr7_2:6532424-6532443 Msa1046140:intron 20.0%
!! TAAAACAAATAGAATTGACA+AGG + chr7_2:6532928-6532947 None:intergenic 20.0%
!!! ATTGATAAAAATCGCTTTTA+GGG + chr7_2:6533063-6533082 None:intergenic 20.0%
!! TAAAATTAATTGTGTGAAGT+CGG - chr7_2:6533154-6533173 Msa1046140:intron 20.0%
!! AGATGACATAATGATAAAAT+GGG + chr7_2:6533265-6533284 None:intergenic 20.0%
!! AAGATGACATAATGATAAAA+TGG + chr7_2:6533266-6533285 None:intergenic 20.0%
!!! AAAAGAGGACTATAATTTTT+TGG - chr7_2:6534199-6534218 Msa1046140:intron 20.0%
!! CTTAAATTAATAACCTTTGT+GGG + chr7_2:6534450-6534469 None:intergenic 20.0%
!! TTTCTTAAATATCACTTCTA+AGG - chr7_2:6534702-6534721 Msa1046140:CDS 20.0%
!!! AAATTTGAGGGAATTATTTT+TGG + chr7_2:6534922-6534941 None:intergenic 20.0%
! CAGAAAAGAATAATGAATTC+TGG - chr7_2:6527363-6527382 Msa1046140:three_prime_UTR 25.0%
! GATCGGAAAATTAAAAAACA+CGG + chr7_2:6527538-6527557 None:intergenic 25.0%
! TGAAAAAAAAAACGAGAGAT+CGG + chr7_2:6527555-6527574 None:intergenic 25.0%
!! ATCATTTTCAGAATCTTCTT+CGG - chr7_2:6527851-6527870 Msa1046140:three_prime_UTR 25.0%
! ATAAGTTATATCAGCCTTTA+CGG + chr7_2:6528238-6528257 None:intergenic 25.0%
!! ATTTTACCAAACACTACAAA+GGG + chr7_2:6528298-6528317 None:intergenic 25.0%
!! AATTTTACCAAACACTACAA+AGG + chr7_2:6528299-6528318 None:intergenic 25.0%
! GTAGTGTTTGGTAAAATTAA+CGG - chr7_2:6528301-6528320 Msa1046140:intron 25.0%
!!! CATTTTTTAGCTTATAGCTT+AGG + chr7_2:6528555-6528574 None:intergenic 25.0%
! CTAAGCTATAAGCTAAAAAA+TGG - chr7_2:6528553-6528572 Msa1046140:intron 25.0%
!! TGTTATGGTAATTTTGCAAA+TGG - chr7_2:6528757-6528776 Msa1046140:intron 25.0%
! TAATGTAACACAAAAGTCAA+AGG + chr7_2:6528899-6528918 None:intergenic 25.0%
!!! CAGTTAGTTTTACGAAAATA+GGG + chr7_2:6528999-6529018 None:intergenic 25.0%
!!! TCAGTTAGTTTTACGAAAAT+AGG + chr7_2:6529000-6529019 None:intergenic 25.0%
!! AGATTTTTCCTAATAGTAGT+AGG - chr7_2:6529060-6529079 Msa1046140:CDS 25.0%
! TTCCGACATATATAATATGA+CGG - chr7_2:6529274-6529293 Msa1046140:intron 25.0%
!!! ATATGACCATTGACTTAATT+TGG - chr7_2:6529537-6529556 Msa1046140:intron 25.0%
! AATTCATGCATGTCTTTATA+CGG + chr7_2:6529740-6529759 None:intergenic 25.0%
! AAAATGTAAACATGAAAGGA+AGG + chr7_2:6530085-6530104 None:intergenic 25.0%
! CGAAAAATGTAACAAAAAGT+GGG + chr7_2:6530394-6530413 None:intergenic 25.0%
!!! CCACTTTTTGTTACATTTTT+CGG - chr7_2:6530392-6530411 Msa1046140:intron 25.0%
!! GTTAGTTTATTTCCATCTTA+GGG - chr7_2:6530426-6530445 Msa1046140:intron 25.0%
! TTAGTTTATTTCCATCTTAG+GGG - chr7_2:6530427-6530446 Msa1046140:intron 25.0%
!!! CATGATTTTAAAAGACTATC+AGG - chr7_2:6530534-6530553 Msa1046140:intron 25.0%
! TTTATGATAGATAAAGAGAG+GGG - chr7_2:6530724-6530743 Msa1046140:intron 25.0%
! ATGAAGACATAAGATTTCTT+GGG + chr7_2:6530917-6530936 None:intergenic 25.0%
! ATCACTTAAAAAAAGTCTCA+TGG + chr7_2:6531040-6531059 None:intergenic 25.0%
! GCAATTTAAAAAAAGTCTTG+TGG + chr7_2:6531123-6531142 None:intergenic 25.0%
! AGAAATTCACTAATAATTCC+TGG - chr7_2:6531481-6531500 Msa1046140:intron 25.0%
!!! AAAGTTTTTTCGTGAAAAGT+TGG - chr7_2:6531808-6531827 Msa1046140:intron 25.0%
! TAAGCAAACTAATCATCATT+TGG + chr7_2:6531914-6531933 None:intergenic 25.0%
!!! AAATGATGATTAGTTTGCTT+AGG - chr7_2:6531913-6531932 Msa1046140:intron 25.0%
! TTCTCGATATAAAATATTCG+AGG + chr7_2:6531998-6532017 None:intergenic 25.0%
!! AATCTGTAGTTTGTATCTTT+AGG + chr7_2:6532665-6532684 None:intergenic 25.0%
! ATCATCACCAATTAATTATG+TGG - chr7_2:6532763-6532782 Msa1046140:intron 25.0%
! CTAAACACCACATAATTAAT+TGG + chr7_2:6532773-6532792 None:intergenic 25.0%
! ATAAATCATCACCAATTATG+TGG - chr7_2:6532818-6532837 Msa1046140:intron 25.0%
! TAGGGTGTGATTATTAATAT+GGG + chr7_2:6533045-6533064 None:intergenic 25.0%
! TTAGGGTGTGATTATTAATA+TGG + chr7_2:6533046-6533065 None:intergenic 25.0%
!!! CATTGATAAAAATCGCTTTT+AGG + chr7_2:6533064-6533083 None:intergenic 25.0%
! AAAATTAATTGTGTGAAGTC+GGG - chr7_2:6533155-6533174 Msa1046140:intron 25.0%
! AAAATGGGATGAAATAGATA+GGG + chr7_2:6533250-6533269 None:intergenic 25.0%
! TAAAATGGGATGAAATAGAT+AGG + chr7_2:6533251-6533270 None:intergenic 25.0%
! AATGTACCTATTGTATTTAG+AGG - chr7_2:6533360-6533379 Msa1046140:intron 25.0%
! TTTACTTAAAGCTGCTATAA+GGG - chr7_2:6533649-6533668 Msa1046140:intron 25.0%
! TAAAAAATACAAGAAAGGAC+TGG + chr7_2:6533924-6533943 None:intergenic 25.0%
! GACACTAAAAAATACAAGAA+AGG + chr7_2:6533929-6533948 None:intergenic 25.0%
! TAGAATACAAAACGATCTTA+GGG + chr7_2:6534077-6534096 None:intergenic 25.0%
! AAACAATAACAGAAGAAAAG+AGG - chr7_2:6534184-6534203 Msa1046140:intron 25.0%
!!! ATGTTTTTTTTTACCCACAA+AGG - chr7_2:6534434-6534453 Msa1046140:intron 25.0%
! CCTTAAATTAATAACCTTTG+TGG + chr7_2:6534451-6534470 None:intergenic 25.0%
! CCACAAAGGTTATTAATTTA+AGG - chr7_2:6534448-6534467 Msa1046140:intron 25.0%
! ATTTAAGAAACATTACCTGT+GGG + chr7_2:6534692-6534711 None:intergenic 25.0%
! TATTTAAGAAACATTACCTG+TGG + chr7_2:6534693-6534712 None:intergenic 25.0%
! AGAACTAGATCGATTAATTT+AGG + chr7_2:6534853-6534872 None:intergenic 25.0%
!!! TTCTGAAATTTTTCATGTCT+TGG - chr7_2:6534869-6534888 Msa1046140:CDS 25.0%
! ACAAGATATATTTAACTGTG+TGG - chr7_2:6535284-6535303 Msa1046140:five_prime_UTR 25.0%
! CAAGATATATTTAACTGTGT+GGG - chr7_2:6535285-6535304 Msa1046140:five_prime_UTR 25.0%
! GAAGACTGAAAATTAAATTC+TGG - chr7_2:6535320-6535339 Msa1046140:five_prime_UTR 25.0%
! AACGTAATTGTGTCTAAAAA+AGG + chr7_2:6535434-6535453 None:intergenic 25.0%
!!! TTTTTTAGACACAATTACGT+TGG - chr7_2:6535433-6535452 Msa1046140:five_prime_UTR 25.0%
AAGAGAAAATGAATCGAGAA+AGG + chr7_2:6527506-6527525 None:intergenic 30.0%
CACAAAAACACAGTGAAATT+AGG + chr7_2:6527580-6527599 None:intergenic 30.0%
TGTAGCAAAAAAAACCTAAG+TGG + chr7_2:6527627-6527646 None:intergenic 30.0%
! AATCTATTTTGCAGCAATCA+AGG - chr7_2:6527714-6527733 Msa1046140:three_prime_UTR 30.0%
AAGGAATCAATCAAGATGTT+AGG - chr7_2:6527733-6527752 Msa1046140:three_prime_UTR 30.0%
! GTTAGGTGTTATAAGAAACA+AGG - chr7_2:6527750-6527769 Msa1046140:three_prime_UTR 30.0%
TCTGAAGATTACTTGTACTA+CGG + chr7_2:6528116-6528135 None:intergenic 30.0%
AAGTAATCTTCAGATTTCGT+AGG - chr7_2:6528122-6528141 Msa1046140:CDS 30.0%
AGTAATCTTCAGATTTCGTA+GGG - chr7_2:6528123-6528142 Msa1046140:CDS 30.0%
!! TTTCAAGTTTCATCCTTGAT+TGG - chr7_2:6528616-6528635 Msa1046140:intron 30.0%
TAATACTCCCATAGATTGTA+TGG - chr7_2:6528667-6528686 Msa1046140:intron 30.0%
CACTAAACCATACAATCTAT+GGG + chr7_2:6528677-6528696 None:intergenic 30.0%
TCACTAAACCATACAATCTA+TGG + chr7_2:6528678-6528697 None:intergenic 30.0%
GTCTGATATTTGATGAGATA+TGG + chr7_2:6528861-6528880 None:intergenic 30.0%
ACTATCTACCTACTACTATT+AGG + chr7_2:6529071-6529090 None:intergenic 30.0%
! GGTTAATAAAGTATCCTCAA+AGG + chr7_2:6529191-6529210 None:intergenic 30.0%
TCCGACATATATAATATGAC+GGG - chr7_2:6529275-6529294 Msa1046140:intron 30.0%
AAAGGACCAAATTAAGTCAA+TGG + chr7_2:6529546-6529565 None:intergenic 30.0%
AGATGAATTAAGCAAACGAA+AGG + chr7_2:6529564-6529583 None:intergenic 30.0%
!!! ATCTTTCAGTTTTAGAGTTG+AGG - chr7_2:6529580-6529599 Msa1046140:intron 30.0%
ATAAGCAAAGACATTGTAAG+GGG + chr7_2:6529671-6529690 None:intergenic 30.0%
CATAAGCAAAGACATTGTAA+GGG + chr7_2:6529672-6529691 None:intergenic 30.0%
TCATAAGCAAAGACATTGTA+AGG + chr7_2:6529673-6529692 None:intergenic 30.0%
! GTATACACTAAACCATTTTC+AGG + chr7_2:6529718-6529737 None:intergenic 30.0%
GGTTGTATTTGATTATAGGT+TGG - chr7_2:6529786-6529805 Msa1046140:intron 30.0%
! TTATAGGTTGGAGAATATCA+AGG - chr7_2:6529798-6529817 Msa1046140:intron 30.0%
AAGGAAATAACTTGAACAAG+TGG + chr7_2:6529849-6529868 None:intergenic 30.0%
TCCTTCAATTTAGATTTCCA+AGG - chr7_2:6529924-6529943 Msa1046140:intron 30.0%
CCTTCAATTTAGATTTCCAA+GGG - chr7_2:6529925-6529944 Msa1046140:intron 30.0%
AGAAAAATAACCTCAGTGAT+GGG + chr7_2:6529991-6530010 None:intergenic 30.0%
AAGAAAAATAACCTCAGTGA+TGG + chr7_2:6529992-6530011 None:intergenic 30.0%
!! ACTTTGGTAATGTAATGTGA+TGG - chr7_2:6530220-6530239 Msa1046140:intron 30.0%
CCGAAAAATGTAACAAAAAG+TGG + chr7_2:6530395-6530414 None:intergenic 30.0%
!! GGTTAGTTTATTTCCATCTT+AGG - chr7_2:6530425-6530444 Msa1046140:intron 30.0%
TAGTTTATTTCCATCTTAGG+GGG - chr7_2:6530428-6530447 Msa1046140:intron 30.0%
! GACTATCAGGATTTTCAATT+TGG - chr7_2:6530547-6530566 Msa1046140:intron 30.0%
CATGAAGACATAAGATTTCT+TGG + chr7_2:6530918-6530937 None:intergenic 30.0%
! TAGATTTTGCTGGATTTTGT+GGG + chr7_2:6530976-6530995 None:intergenic 30.0%
! TTAGATTTTGCTGGATTTTG+TGG + chr7_2:6530977-6530996 None:intergenic 30.0%
TGTGTTTGGATGATGTAATT+TGG - chr7_2:6531209-6531228 Msa1046140:intron 30.0%
TTATATTGCAGCTGTTTACA+TGG - chr7_2:6531521-6531540 Msa1046140:intron 30.0%
TTGCACACTGAATTTAAGAA+AGG + chr7_2:6531696-6531715 None:intergenic 30.0%
TATTCTTATCACACAGAAGA+CGG + chr7_2:6531869-6531888 None:intergenic 30.0%
CTAATCATCATTTGGAAACT+CGG + chr7_2:6531906-6531925 None:intergenic 30.0%
AAATTAGAAGGATAGTGATG+TGG - chr7_2:6532254-6532273 Msa1046140:intron 30.0%
! TTAAAGCATTTCTGTATGCA+TGG - chr7_2:6532596-6532615 Msa1046140:intron 30.0%
! TGTAGTTTGTATCTTTAGGA+GGG + chr7_2:6532661-6532680 None:intergenic 30.0%
AGATACAAACTACAGATTTG+TGG - chr7_2:6532667-6532686 Msa1046140:intron 30.0%
!!! TGGTTAGTTTTATAGTCACA+TGG - chr7_2:6532845-6532864 Msa1046140:intron 30.0%
!!! GTTTGTTGGTATTTTTTTGC+CGG - chr7_2:6532893-6532912 Msa1046140:intron 30.0%
ATTGACAAGGAATGATATTC+CGG + chr7_2:6532915-6532934 None:intergenic 30.0%
TTATTAATATGGGTATGCAC+AGG + chr7_2:6533035-6533054 None:intergenic 30.0%
AAATCAAATTACATGTCTGC+TGG - chr7_2:6533330-6533349 Msa1046140:intron 30.0%
AATCAAATTACATGTCTGCT+GGG - chr7_2:6533331-6533350 Msa1046140:intron 30.0%
GTTTCATAGAAGAAAATGTC+AGG + chr7_2:6533439-6533458 None:intergenic 30.0%
CATAACGAAAGAAAAACAGT+GGG + chr7_2:6533487-6533506 None:intergenic 30.0%
TCATAACGAAAGAAAAACAG+TGG + chr7_2:6533488-6533507 None:intergenic 30.0%
GTTTACTTAAAGCTGCTATA+AGG - chr7_2:6533648-6533667 Msa1046140:intron 30.0%
!! TCATTTTCAAGGAAAACTAC+AGG + chr7_2:6533683-6533702 None:intergenic 30.0%
! CTTACAGTAACTCATTTTCA+AGG + chr7_2:6533694-6533713 None:intergenic 30.0%
TATTACAGCCTTCTCAAAAA+TGG - chr7_2:6534025-6534044 Msa1046140:intron 30.0%
CTAGAATACAAAACGATCTT+AGG + chr7_2:6534078-6534097 None:intergenic 30.0%
! CTAAGATCGTTTTGTATTCT+AGG - chr7_2:6534076-6534095 Msa1046140:intron 30.0%
TTATTGCAAATGTGTTTGCT+TGG + chr7_2:6534283-6534302 None:intergenic 30.0%
!!! GTAAAACCACTTTTTGTATG+AGG + chr7_2:6534954-6534973 None:intergenic 30.0%
!!! TTTTACTCATTGATTCTGTC+AGG - chr7_2:6534968-6534987 Msa1046140:intron 30.0%
TTTATAATTCCCAGCATATC+TGG - chr7_2:6535068-6535087 Msa1046140:intron 30.0%
TTATAATTCCCAGCATATCT+GGG - chr7_2:6535069-6535088 Msa1046140:intron 30.0%
!! TCATTTTCTTTCTAGCATAC+CGG - chr7_2:6535215-6535234 Msa1046140:intron 30.0%
!! TAATTTGTTTGCATTGCGTT+TGG - chr7_2:6535343-6535362 Msa1046140:five_prime_UTR 30.0%
! AATTTGTTTGCATTGCGTTT+GGG - chr7_2:6535344-6535363 Msa1046140:five_prime_UTR 30.0%
AAAAGGATGCACTAAAGTAT+GGG + chr7_2:6535417-6535436 None:intergenic 30.0%
AAAAAGGATGCACTAAAGTA+TGG + chr7_2:6535418-6535437 None:intergenic 30.0%
! TGATCTTAGAAAGTGTGAAA+AGG - chr7_2:6535480-6535499 Msa1046140:five_prime_UTR 30.0%
GTAGAGGAATTCGAATACTT+AGG + chr7_2:6527403-6527422 None:intergenic 35.0%
TAAGTGGCAAAAATCGTAAC+CGG + chr7_2:6527611-6527630 None:intergenic 35.0%
CAACAAACAAACCTGTTTAG+CGG + chr7_2:6527911-6527930 None:intergenic 35.0%
!! CATCAAGAAGACTTTAGGAT+CGG + chr7_2:6528054-6528073 None:intergenic 35.0%
GATCCTAAAGTCTTCTTGAT+GGG - chr7_2:6528053-6528072 Msa1046140:intron 35.0%
GCTGATAAGTTAGCATATAG+AGG - chr7_2:6528165-6528184 Msa1046140:CDS 35.0%
!! GAGTTAAGCTTTTTCCGTAA+AGG - chr7_2:6528221-6528240 Msa1046140:CDS 35.0%
TTTCAGTCGAATGTGCTTAT+AGG - chr7_2:6528528-6528547 Msa1046140:intron 35.0%
CACTAAAATTGCAATCTGAC+AGG + chr7_2:6528722-6528741 None:intergenic 35.0%
TTGAAGCGTAAATCTTGTCA+TGG + chr7_2:6528927-6528946 None:intergenic 35.0%
! GTTTTACGAAAATAGGGACT+AGG + chr7_2:6528993-6529012 None:intergenic 35.0%
AAGGTCAACTAAGTACTTCA+GGG + chr7_2:6529162-6529181 None:intergenic 35.0%
TAAGGTCAACTAAGTACTTC+AGG + chr7_2:6529163-6529182 None:intergenic 35.0%
TTGACCTTAAGATTCCTTTG+AGG - chr7_2:6529174-6529193 Msa1046140:intron 35.0%
GTATCCTCAAAGGAATCTTA+AGG + chr7_2:6529181-6529200 None:intergenic 35.0%
! CATTCTCTTTTCTACGCTTT+TGG + chr7_2:6529212-6529231 None:intergenic 35.0%
! CAAAAGCGTAGAAAAGAGAA+TGG - chr7_2:6529210-6529229 Msa1046140:intron 35.0%
GCCCGTCATATTATATATGT+CGG + chr7_2:6529279-6529298 None:intergenic 35.0%
!! TATAATATGACGGGCAAAAC+TGG - chr7_2:6529284-6529303 Msa1046140:intron 35.0%
GTTTATGCATGTATGTGTGT+GGG + chr7_2:6529434-6529453 None:intergenic 35.0%
AGTTTATGCATGTATGTGTG+TGG + chr7_2:6529435-6529454 None:intergenic 35.0%
CAATGGTCATATTAACGACT+AGG + chr7_2:6529529-6529548 None:intergenic 35.0%
!!! TTTCAGTTTTAGAGTTGAGG+TGG - chr7_2:6529583-6529602 Msa1046140:intron 35.0%
AGGATATTTCCACCTGAAAA+TGG - chr7_2:6529703-6529722 Msa1046140:intron 35.0%
!! TACACTAAACCATTTTCAGG+TGG + chr7_2:6529715-6529734 None:intergenic 35.0%
AGAATATCAAGGTGCATACA+AGG - chr7_2:6529809-6529828 Msa1046140:intron 35.0%
! TGTTCAAGTTATTTCCTTGC+TGG - chr7_2:6529851-6529870 Msa1046140:intron 35.0%
CCCTTGGAAATCTAAATTGA+AGG + chr7_2:6529928-6529947 None:intergenic 35.0%
TTAGATTTCCAAGGGACTAT+TGG - chr7_2:6529933-6529952 Msa1046140:intron 35.0%
TTAATCCTGTCATTGCTTTG+AGG - chr7_2:6530113-6530132 Msa1046140:intron 35.0%
ATAAACCTCAAAGCAATGAC+AGG + chr7_2:6530121-6530140 None:intergenic 35.0%
TTATTAGATGGATGCACAGA+TGG + chr7_2:6530185-6530204 None:intergenic 35.0%
! TGGTAATGTAATGTGATGGA+TGG - chr7_2:6530224-6530243 Msa1046140:intron 35.0%
TGTTACTAGAGTTAAGAAGC+AGG + chr7_2:6530348-6530367 None:intergenic 35.0%
GGAAATAAACTAACCACTCA+TGG + chr7_2:6530420-6530439 None:intergenic 35.0%
AAAATCCCTTAGAGTGTGTT+TGG - chr7_2:6531195-6531214 Msa1046140:intron 35.0%
ATCATCCAAACACACTCTAA+GGG + chr7_2:6531203-6531222 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr7_2:6531269-6531288 None:intergenic 35.0%
GAGGAAATGTAATGTTACGA+GGG + chr7_2:6531287-6531306 None:intergenic 35.0%
TGAGGAAATGTAATGTTACG+AGG + chr7_2:6531288-6531307 None:intergenic 35.0%
TGAATTCCATTGTTTGGATG+GGG + chr7_2:6531327-6531346 None:intergenic 35.0%
GTGAATTCCATTGTTTGGAT+GGG + chr7_2:6531328-6531347 None:intergenic 35.0%
TTGAGGTGAATTCCATTGTT+TGG + chr7_2:6531333-6531352 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG + chr7_2:6531269-6531288 None:intergenic 35.0%
GAGGGAATGTAATGTTATGA+GGG + chr7_2:6531368-6531387 None:intergenic 35.0%
TGAGGGAATGTAATGTTATG+AGG + chr7_2:6531369-6531388 None:intergenic 35.0%
! TTCTAAGAGTGTGTTTGGAT+GGG + chr7_2:6531401-6531420 None:intergenic 35.0%
! ATTCTAAGAGTGTGTTTGGA+TGG + chr7_2:6531402-6531421 None:intergenic 35.0%
! TAGGATTCTAAGAGTGTGTT+TGG + chr7_2:6531406-6531425 None:intergenic 35.0%
! TCACTGGTTGTAACTTCTAA+GGG + chr7_2:6531442-6531461 None:intergenic 35.0%
TGTTCATTAAATATGCAGGC+TGG - chr7_2:6531565-6531584 Msa1046140:intron 35.0%
GTTCATTAAATATGCAGGCT+GGG - chr7_2:6531566-6531585 Msa1046140:intron 35.0%
AATGTCATAAACTCCACAAC+AGG + chr7_2:6531634-6531653 None:intergenic 35.0%
ACCAAACACAGAGAAATCAT+GGG + chr7_2:6531750-6531769 None:intergenic 35.0%
AACCAAACACAGAGAAATCA+TGG + chr7_2:6531751-6531770 None:intergenic 35.0%
!!! TCTGTGTTTGGTTTTCTGTT+TGG - chr7_2:6531758-6531777 Msa1046140:intron 35.0%
GCTTCCTTCAGATTATTAGA+TGG - chr7_2:6531830-6531849 Msa1046140:intron 35.0%
GATGCCATCTAATAATCTGA+AGG + chr7_2:6531837-6531856 None:intergenic 35.0%
AGAATGATGTCTTTCACTCT+GGG + chr7_2:6532099-6532118 None:intergenic 35.0%
AAGAATGATGTCTTTCACTC+TGG + chr7_2:6532100-6532119 None:intergenic 35.0%
AAGGATTTGAAGATTCTGAG+GGG + chr7_2:6532339-6532358 None:intergenic 35.0%
CAAGGATTTGAAGATTCTGA+GGG + chr7_2:6532340-6532359 None:intergenic 35.0%
TCAAGGATTTGAAGATTCTG+AGG + chr7_2:6532341-6532360 None:intergenic 35.0%
!!! CTGTTTTGACTCAGTTATCA+AGG + chr7_2:6532358-6532377 None:intergenic 35.0%
ATTTCTGTATGCATGGTGAA+AGG - chr7_2:6532603-6532622 Msa1046140:intron 35.0%
AATCAATCACGGGATTACAT+GGG + chr7_2:6532637-6532656 None:intergenic 35.0%
! CTGTAGTTTGTATCTTTAGG+AGG + chr7_2:6532662-6532681 None:intergenic 35.0%
TCTTCCAATATAGAGCTCAA+CGG + chr7_2:6532704-6532723 None:intergenic 35.0%
ATCACCAATTATGTGGTGTT+TGG - chr7_2:6532825-6532844 Msa1046140:intron 35.0%
CTAACCAAACACCACATAAT+TGG + chr7_2:6532832-6532851 None:intergenic 35.0%
!!! GTCAGTCAAGTTTTGTTTGT+TGG - chr7_2:6532879-6532898 Msa1046140:intron 35.0%
CAGGAAGAATTGCAAACATA+AGG + chr7_2:6533016-6533035 None:intergenic 35.0%
TAGTAAGCCAAGAAGATGAA+GGG + chr7_2:6533221-6533240 None:intergenic 35.0%
TTGGGTCCTCTAAATACAAT+AGG + chr7_2:6533369-6533388 None:intergenic 35.0%
ATTGTATTTAGAGGACCCAA+TGG - chr7_2:6533369-6533388 Msa1046140:intron 35.0%
CTGAAGTATATGTGCTCAAT+GGG + chr7_2:6533511-6533530 None:intergenic 35.0%
ACTGAAGTATATGTGCTCAA+TGG + chr7_2:6533512-6533531 None:intergenic 35.0%
TGCATAAAAGCAAAGTTGTG+GGG + chr7_2:6533554-6533573 None:intergenic 35.0%
CTGCATAAAAGCAAAGTTGT+GGG + chr7_2:6533555-6533574 None:intergenic 35.0%
ACTGCATAAAAGCAAAGTTG+TGG + chr7_2:6533556-6533575 None:intergenic 35.0%
TTATGCAGTGTTATGCATCT+TGG - chr7_2:6533567-6533586 Msa1046140:intron 35.0%
TGACTTATGTGCTGTAGATA+TGG - chr7_2:6533803-6533822 Msa1046140:intron 35.0%
GAAACTGGAATCAAGAACTT+CGG + chr7_2:6533849-6533868 None:intergenic 35.0%
CTTAACAGATTGAGAGAGAA+GGG - chr7_2:6533991-6534010 Msa1046140:intron 35.0%
!! AAAGCCAACCATTTTTGAGA+AGG + chr7_2:6534036-6534055 None:intergenic 35.0%
TTACCTAGTAGTATGTGAGA+TGG - chr7_2:6534129-6534148 Msa1046140:intron 35.0%
TATCCATCTCACATACTACT+AGG + chr7_2:6534135-6534154 None:intergenic 35.0%
GTAGTATGTGAGATGGATAT+AGG - chr7_2:6534136-6534155 Msa1046140:intron 35.0%
! CCAAAGAGAAAGTGCATAAA+GGG + chr7_2:6534398-6534417 None:intergenic 35.0%
! ACCAAAGAGAAAGTGCATAA+AGG + chr7_2:6534399-6534418 None:intergenic 35.0%
CATTATATCTCTTTGCTTGC+TGG - chr7_2:6534746-6534765 Msa1046140:intron 35.0%
! TCATGTCTTGGTTAGTTCTT+TGG - chr7_2:6534881-6534900 Msa1046140:CDS 35.0%
TGATAACAATGACACAAGAG+AGG - chr7_2:6535118-6535137 Msa1046140:intron 35.0%
!! ACAAGAGAGGAAGTTTTGTA+TGG - chr7_2:6535131-6535150 Msa1046140:intron 35.0%
!! AAGTTTTGTATGGAACCTAG+TGG - chr7_2:6535141-6535160 Msa1046140:intron 35.0%
AAAAACAGAAGTTGACCACT+AGG + chr7_2:6535159-6535178 None:intergenic 35.0%
TAAGATCAAATCGACGTGAT+AGG + chr7_2:6535468-6535487 None:intergenic 35.0%
!! TCAGAGTTGGTGAGTATCAA+TGG + chr7_2:6527453-6527472 None:intergenic 40.0%
GGAACGAAAAGTTTCAGAGT+TGG + chr7_2:6527466-6527485 None:intergenic 40.0%
!! TCTGAAACTTTTCGTTCCAC+AGG - chr7_2:6527468-6527487 Msa1046140:three_prime_UTR 40.0%
ATGAATCGAGAAAGGAAGAG+TGG + chr7_2:6527498-6527517 None:intergenic 40.0%
!! GGTTACGATTTTTGCCACTT+AGG - chr7_2:6527610-6527629 Msa1046140:three_prime_UTR 40.0%
AGAAGAGAGATGTCTGAATG+CGG + chr7_2:6527887-6527906 None:intergenic 40.0%
CGATCCTAAAGTCTTCTTGA+TGG - chr7_2:6528052-6528071 Msa1046140:intron 40.0%
TCACCCATCAAGAAGACTTT+AGG + chr7_2:6528059-6528078 None:intergenic 40.0%
TGAAGAGGTAAAGCGAGATA+TGG - chr7_2:6528076-6528095 Msa1046140:CDS 40.0%
AAGCTACGAATATCCGCTAT+AGG + chr7_2:6528200-6528219 None:intergenic 40.0%
AACACTACAAAGGGTCTGTT+TGG + chr7_2:6528289-6528308 None:intergenic 40.0%
AACAGACCCTTTGTAGTGTT+TGG - chr7_2:6528289-6528308 Msa1046140:CDS 40.0%
!! AAGTCCAAGTCGGTTTTGTA+GGG + chr7_2:6528791-6528810 None:intergenic 40.0%
!! AAAACCGACTTGGACTTGTA+AGG - chr7_2:6528794-6528813 Msa1046140:intron 40.0%
GGTCAGAAAATCTGTTTGAG+TGG + chr7_2:6528840-6528859 None:intergenic 40.0%
TATCAGACTTCTCAACAACC+AGG - chr7_2:6528873-6528892 Msa1046140:intron 40.0%
TAACACAAAAGTCAAAGGCC+TGG + chr7_2:6528894-6528913 None:intergenic 40.0%
AGTAGGTAGATAGTACGAAG+CGG - chr7_2:6529077-6529096 Msa1046140:CDS 40.0%
CGTAGAAAAGAGAATGGAAG+AGG - chr7_2:6529216-6529235 Msa1046140:intron 40.0%
! AAGAATACCTCTAAGAGACC+TGG - chr7_2:6529244-6529263 Msa1046140:intron 40.0%
ATATGTCGGAATATAGGACC+AGG + chr7_2:6529265-6529284 None:intergenic 40.0%
! TGATTTGTACATTCCGAAGC+CGG - chr7_2:6529474-6529493 Msa1046140:intron 40.0%
CATATTAACGACTAGGCAAG+TGG + chr7_2:6529522-6529541 None:intergenic 40.0%
GTTCATTCATGCAATGCAAG+TGG + chr7_2:6529629-6529648 None:intergenic 40.0%
TTGTAAGGGGAAGATTGTGT+GGG + chr7_2:6529658-6529677 None:intergenic 40.0%
ATTGTAAGGGGAAGATTGTG+TGG + chr7_2:6529659-6529678 None:intergenic 40.0%
TTGCTTATGACATCTGCTTC+AGG - chr7_2:6529683-6529702 Msa1046140:intron 40.0%
TATCAAGGTGCATACAAGGT+TGG - chr7_2:6529813-6529832 Msa1046140:intron 40.0%
AAATAAAGCAACAGCCAGCA+AGG + chr7_2:6529868-6529887 None:intergenic 40.0%
ATACTTCTCCAATAGTCCCT+TGG + chr7_2:6529944-6529963 None:intergenic 40.0%
AAGGGACTATTGGAGAAGTA+TGG - chr7_2:6529943-6529962 Msa1046140:intron 40.0%
GTTTAAACCTCGCAAATCAG+TGG + chr7_2:6530049-6530068 None:intergenic 40.0%
GGTTTATATACCAGTGCTTG+TGG - chr7_2:6530134-6530153 Msa1046140:intron 40.0%
ATATACCAGTGCTTGTGGAT+TGG - chr7_2:6530139-6530158 Msa1046140:intron 40.0%
!! ATGTAATGTGATGGATGGCA+TGG - chr7_2:6530229-6530248 Msa1046140:intron 40.0%
!! TGTAATGTGATGGATGGCAT+GGG - chr7_2:6530230-6530249 Msa1046140:intron 40.0%
!! ACATTTTTCGGTACCATGAG+TGG - chr7_2:6530404-6530423 Msa1046140:intron 40.0%
CATCATCCAAACACACTCTA+AGG + chr7_2:6531204-6531223 None:intergenic 40.0%
GGGAATGCAATGTAATGTTG+AGG + chr7_2:6531306-6531325 None:intergenic 40.0%
GAATTCCATTGTTTGGATGG+GGG + chr7_2:6531326-6531345 None:intergenic 40.0%
GGTGAATTCCATTGTTTGGA+TGG + chr7_2:6531329-6531348 None:intergenic 40.0%
! TCTAAGAGTGTGTTTGGATG+GGG + chr7_2:6531400-6531419 None:intergenic 40.0%
TAAGGGGGATGTATTGGATT+AGG + chr7_2:6531425-6531444 None:intergenic 40.0%
! AACTTCTAAGGGGGATGTAT+TGG + chr7_2:6531431-6531450 None:intergenic 40.0%
! ACTGGTTGTAACTTCTAAGG+GGG + chr7_2:6531440-6531459 None:intergenic 40.0%
! CACTGGTTGTAACTTCTAAG+GGG + chr7_2:6531441-6531460 None:intergenic 40.0%
! CTCACTGGTTGTAACTTCTA+AGG + chr7_2:6531443-6531462 None:intergenic 40.0%
TAGAAGTTACAACCAGTGAG+TGG - chr7_2:6531443-6531462 Msa1046140:intron 40.0%
TTCATACAAAGTCCACTCAC+TGG + chr7_2:6531458-6531477 None:intergenic 40.0%
! GACATTTAACTTCTCCATGC+AGG - chr7_2:6531648-6531667 Msa1046140:intron 40.0%
GAGATAAACACTAACCTGCA+TGG + chr7_2:6531665-6531684 None:intergenic 40.0%
CCAAACACAGAGAAATCATG+GGG + chr7_2:6531749-6531768 None:intergenic 40.0%
! ATAGTGATGTGGCTTGTGAA+CGG - chr7_2:6532265-6532284 Msa1046140:intron 40.0%
AAAGCTCAAACCATAATCCG+TGG - chr7_2:6532455-6532474 Msa1046140:intron 40.0%
AAGCTCAAACCATAATCCGT+GGG - chr7_2:6532456-6532475 Msa1046140:intron 40.0%
CAATCAATCACGGGATTACA+TGG + chr7_2:6532638-6532657 None:intergenic 40.0%
TTTAGGAGGGCAATCAATCA+CGG + chr7_2:6532648-6532667 None:intergenic 40.0%
ACAAACTACAGATTTGTGGC+TGG - chr7_2:6532671-6532690 Msa1046140:intron 40.0%
AAACCCGTTGAGCTCTATAT+TGG - chr7_2:6532697-6532716 Msa1046140:intron 40.0%
CTTCCAATATAGAGCTCAAC+GGG + chr7_2:6532703-6532722 None:intergenic 40.0%
GAGCTCTATATTGGAAGATC+TGG - chr7_2:6532706-6532725 Msa1046140:intron 40.0%
!! CAAAACTTGACTGACTCGTA+TGG + chr7_2:6532874-6532893 None:intergenic 40.0%
CTAGTAAGCCAAGAAGATGA+AGG + chr7_2:6533222-6533241 None:intergenic 40.0%
CTTCATCTTCTTGGCTTACT+AGG - chr7_2:6533220-6533239 Msa1046140:intron 40.0%
GTCATCTTGATTTCTGTTGC+AGG - chr7_2:6533278-6533297 Msa1046140:intron 40.0%
CAGTGTTATGCATCTTGGTA+TGG - chr7_2:6533572-6533591 Msa1046140:intron 40.0%
CGAGCATCTTCAGATGAATA+TGG + chr7_2:6533626-6533645 None:intergenic 40.0%
TATTCATCTGAAGATGCTCG+TGG - chr7_2:6533626-6533645 Msa1046140:intron 40.0%
CAAGGAAAACTACAGGATCA+GGG + chr7_2:6533676-6533695 None:intergenic 40.0%
TCAAGGAAAACTACAGGATC+AGG + chr7_2:6533677-6533696 None:intergenic 40.0%
!! AGTACCTTTGCTTTTCCGAT+GGG + chr7_2:6533878-6533897 None:intergenic 40.0%
!! AAGTACCTTTGCTTTTCCGA+TGG + chr7_2:6533879-6533898 None:intergenic 40.0%
GCTTAACAGATTGAGAGAGA+AGG - chr7_2:6533990-6534009 Msa1046140:intron 40.0%
ACAGCCTTCTCAAAAATGGT+TGG - chr7_2:6534029-6534048 Msa1046140:intron 40.0%
!! AATGGTTGGCTTTGCTCTAA+AGG - chr7_2:6534043-6534062 Msa1046140:intron 40.0%
TGCAAATGTGTTTGCTTGGT+AGG + chr7_2:6534279-6534298 None:intergenic 40.0%
CCCTTTATGCACTTTCTCTT+TGG - chr7_2:6534395-6534414 Msa1046140:intron 40.0%
!! TTTCCTGACAGAAGCATTGA+TGG + chr7_2:6534499-6534518 None:intergenic 40.0%
!! TTTTGGCTATCTTGATGCAC+CGG - chr7_2:6534602-6534621 Msa1046140:intron 40.0%
!! AGATTTGCTGCATAAGGCAT+GGG + chr7_2:6534654-6534673 None:intergenic 40.0%
!! CTTTCCAGATTTGCTGCATA+AGG + chr7_2:6534660-6534679 None:intergenic 40.0%
TGCAGCAAATCTGGAAAGAT+TGG - chr7_2:6534662-6534681 Msa1046140:intron 40.0%
! TCTTTGCTTGCTGGTATATG+TGG - chr7_2:6534755-6534774 Msa1046140:intron 40.0%
! AGGTTGTGGTGGAAATTTGA+GGG + chr7_2:6534934-6534953 None:intergenic 40.0%
! CTTTTTGTATGAGGTTGTGG+TGG + chr7_2:6534945-6534964 None:intergenic 40.0%
!!! CCACTTTTTGTATGAGGTTG+TGG + chr7_2:6534948-6534967 None:intergenic 40.0%
CCACAACCTCATACAAAAAG+TGG - chr7_2:6534945-6534964 Msa1046140:intron 40.0%
!! TCATTGATTCTGTCAGGCTT+TGG - chr7_2:6534974-6534993 Msa1046140:intron 40.0%
ACTCAAAACAGCAAGCAAGT+TGG + chr7_2:6535253-6535272 None:intergenic 40.0%
TTGAATTGTGGCTGTTATCC+CGG - chr7_2:6535370-6535389 Msa1046140:five_prime_UTR 40.0%
! GAAAGTGTGAAAAGGCAGAT+TGG - chr7_2:6535488-6535507 Msa1046140:five_prime_UTR 40.0%
AAGGAAGAGTGGAATACCTG+TGG + chr7_2:6527487-6527506 None:intergenic 45.0%
!! GTGTTTTTGTGAGATCTCGC+CGG - chr7_2:6527589-6527608 Msa1046140:three_prime_UTR 45.0%
TGTCTGAATGCGGAAAAGGA+AGG + chr7_2:6527877-6527896 None:intergenic 45.0%
GAGATGTCTGAATGCGGAAA+AGG + chr7_2:6527881-6527900 None:intergenic 45.0%
TCTCTCTTCTTCCGCTAAAC+AGG - chr7_2:6527897-6527916 Msa1046140:exon 45.0%
!! CAAGAAGACTTTAGGATCGG+CGG + chr7_2:6528051-6528070 None:intergenic 45.0%
! AGTCTTCTTGATGGGTGAAG+AGG - chr7_2:6528061-6528080 Msa1046140:intron 45.0%
AGATTTCGTAGGGCTCTGTT+TGG - chr7_2:6528133-6528152 Msa1046140:CDS 45.0%
GAGGATGAGCTATCCTATAG+CGG - chr7_2:6528184-6528203 Msa1046140:CDS 45.0%
CCTCTTTCCTAGGTTCTGTT+TGG + chr7_2:6528585-6528604 None:intergenic 45.0%
CCAAACAGAACCTAGGAAAG+AGG - chr7_2:6528582-6528601 Msa1046140:intron 45.0%
ACTGATCTTGCCTCTTTCCT+AGG + chr7_2:6528595-6528614 None:intergenic 45.0%
CCACTCTAGACAACCAATCA+AGG + chr7_2:6528632-6528651 None:intergenic 45.0%
! CCTTGATTGGTTGTCTAGAG+TGG - chr7_2:6528629-6528648 Msa1046140:intron 45.0%
GAAACCCTACAAAACCGACT+TGG - chr7_2:6528784-6528803 Msa1046140:intron 45.0%
!! CAAGTCCAAGTCGGTTTTGT+AGG + chr7_2:6528792-6528811 None:intergenic 45.0%
GTCACCTTACAAGTCCAAGT+CGG + chr7_2:6528801-6528820 None:intergenic 45.0%
TATAGGACCAGGTCTCTTAG+AGG + chr7_2:6529254-6529273 None:intergenic 45.0%
GATTTGTACATTCCGAAGCC+GGG - chr7_2:6529475-6529494 Msa1046140:intron 45.0%
ATTTGTACATTCCGAAGCCG+GGG - chr7_2:6529476-6529495 Msa1046140:intron 45.0%
AACTTGAACAGAAGAAGCCC+CGG + chr7_2:6529496-6529515 None:intergenic 45.0%
ATTCATGCAATGCAAGTGGC+TGG + chr7_2:6529625-6529644 None:intergenic 45.0%
TTGTACCAATCCACAAGCAC+TGG + chr7_2:6530147-6530166 None:intergenic 45.0%
!! GTAATGTGATGGATGGCATG+GGG - chr7_2:6530231-6530250 Msa1046140:intron 45.0%
AGTTAGCAGAAGTTCGCATG+AGG + chr7_2:6530276-6530295 None:intergenic 45.0%
! TTCCATCTTAGGGGGTGTAT+TGG - chr7_2:6530436-6530455 Msa1046140:intron 45.0%
ATCCAATACACCCCCTAAGA+TGG + chr7_2:6530441-6530460 None:intergenic 45.0%
ATAAAGAGAGGGGAGAAGAG+AGG - chr7_2:6530734-6530753 Msa1046140:intron 45.0%
GAGAGAGAGAGAGAAAAGAG+AGG - chr7_2:6530789-6530808 Msa1046140:intron 45.0%
GAAAAGAGAGGAGAGAGAGA+AGG - chr7_2:6530847-6530866 Msa1046140:intron 45.0%
AGGAGAGAGAGAAGGATGAA+GGG - chr7_2:6530855-6530874 Msa1046140:intron 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG + chr7_2:6531386-6531405 None:intergenic 45.0%
! TTGGATGGGGGAATGTTTTG+AGG + chr7_2:6531387-6531406 None:intergenic 45.0%
! CTAAGAGTGTGTTTGGATGG+GGG + chr7_2:6531399-6531418 None:intergenic 45.0%
AATATGCAGGCTGGGTTTAC+TGG - chr7_2:6531574-6531593 Msa1046140:intron 45.0%
ATATGCAGGCTGGGTTTACT+GGG - chr7_2:6531575-6531594 Msa1046140:intron 45.0%
! CTATGGTCTAAAGCCTGTTG+TGG - chr7_2:6531618-6531637 Msa1046140:intron 45.0%
CCCCATGATTTCTCTGTGTT+TGG - chr7_2:6531746-6531765 Msa1046140:intron 45.0%
AAACCACACCATACAGTTGG+AGG - chr7_2:6532289-6532308 Msa1046140:intron 45.0%
AACCACACCATACAGTTGGA+GGG - chr7_2:6532290-6532309 Msa1046140:intron 45.0%
AGCTCAAACCATAATCCGTG+GGG - chr7_2:6532457-6532476 Msa1046140:intron 45.0%
TGGAGGTGAATTAGAAGGGT+AGG - chr7_2:6532480-6532499 Msa1046140:intron 45.0%
GTGAATTAGAAGGGTAGGCA+TGG - chr7_2:6532485-6532504 Msa1046140:intron 45.0%
AAACCCCAACAGAAACCTGA+CGG - chr7_2:6532511-6532530 Msa1046140:intron 45.0%
ATCACGGGATTACATGGGTT+GGG + chr7_2:6532632-6532651 None:intergenic 45.0%
AATCACGGGATTACATGGGT+TGG + chr7_2:6532633-6532652 None:intergenic 45.0%
TTAGGAGGGCAATCAATCAC+GGG + chr7_2:6532647-6532666 None:intergenic 45.0%
AACTACAGATTTGTGGCTGG+AGG - chr7_2:6532674-6532693 Msa1046140:intron 45.0%
AAGCACTCCCTTCATCTTCT+TGG - chr7_2:6533211-6533230 Msa1046140:intron 45.0%
!! ATGCCCTGGGTTGAAAGTTT+TGG - chr7_2:6533598-6533617 Msa1046140:intron 45.0%
GTGCCAAAACTTTCAACCCA+GGG + chr7_2:6533604-6533623 None:intergenic 45.0%
CAAGAACTTCGGCAGAAACA+GGG + chr7_2:6533838-6533857 None:intergenic 45.0%
TCAAGAACTTCGGCAGAAAC+AGG + chr7_2:6533839-6533858 None:intergenic 45.0%
ATGTGTTTGCTTGGTAGGAC+AGG + chr7_2:6534274-6534293 None:intergenic 45.0%
AAAGGAAGGAATCAGTGCTG+AGG - chr7_2:6534340-6534359 Msa1046140:intron 45.0%
TGTCAGGAAAACCAACAGAC+TGG - chr7_2:6534509-6534528 Msa1046140:intron 45.0%
TTCAACTGTCACCAGTCTGT+TGG + chr7_2:6534523-6534542 None:intergenic 45.0%
AGACTGGTGACAGTTGAAGA+AGG - chr7_2:6534525-6534544 Msa1046140:intron 45.0%
GACTGGTGACAGTTGAAGAA+GGG - chr7_2:6534526-6534545 Msa1046140:intron 45.0%
AATCTGTGCATCTGTCATCG+AGG - chr7_2:6534575-6534594 Msa1046140:intron 45.0%
! TCTGTCATCGAGGAGAGTTT+TGG - chr7_2:6534585-6534604 Msa1046140:intron 45.0%
!! CAGATTTGCTGCATAAGGCA+TGG + chr7_2:6534655-6534674 None:intergenic 45.0%
CATGCCTTATGCAGCAAATC+TGG - chr7_2:6534653-6534672 Msa1046140:intron 45.0%
ATTTAGGCAGTTGCAGCCAT+AGG + chr7_2:6534837-6534856 None:intergenic 45.0%
! GAGGTTGTGGTGGAAATTTG+AGG + chr7_2:6534935-6534954 None:intergenic 45.0%
TAATTCCCAGCATATCTGGG+AGG - chr7_2:6535072-6535091 Msa1046140:intron 45.0%
AACATCCTCCCAGATATGCT+GGG + chr7_2:6535080-6535099 None:intergenic 45.0%
TAGCATACCGGAAACTGCAA+AGG - chr7_2:6535227-6535246 Msa1046140:intron 45.0%
!! AAGTTGGCCTTTGCAGTTTC+CGG + chr7_2:6535237-6535256 None:intergenic 45.0%
! GCGTTTGGGACTTTGAATTG+TGG - chr7_2:6535358-6535377 Msa1046140:five_prime_UTR 45.0%
TCTCAGAAGCAGGCTTATAC+CGG + chr7_2:6535392-6535411 None:intergenic 45.0%
AGTATGGGTATCTCAGAAGC+AGG + chr7_2:6535402-6535421 None:intergenic 45.0%
GGTCTTGCCAAACAGAACCT+AGG - chr7_2:6528575-6528594 Msa1046140:intron 50.0%
AGTGTAACGCCTCAGCATTG+AGG + chr7_2:6529104-6529123 None:intergenic 50.0%
! TGGAGAAGTATGGTCCTGAG+AGG - chr7_2:6529953-6529972 Msa1046140:intron 50.0%
! GGAGAAGTATGGTCCTGAGA+GGG - chr7_2:6529954-6529973 Msa1046140:intron 50.0%
!! TTTGCAGCCACTGATTTGCG+AGG - chr7_2:6530039-6530058 Msa1046140:intron 50.0%
CATGAAAGGAAGGACAGCGA+GGG + chr7_2:6530075-6530094 None:intergenic 50.0%
ACATGAAAGGAAGGACAGCG+AGG + chr7_2:6530076-6530095 None:intergenic 50.0%
TAGATGGATGCACAGATGGC+AGG + chr7_2:6530181-6530200 None:intergenic 50.0%
! ATGGCATGGGGTGTCATGTT+GGG - chr7_2:6530243-6530262 Msa1046140:intron 50.0%
AGGAGAGAGACGAAGAGAGA+AGG - chr7_2:6530809-6530828 Msa1046140:intron 50.0%
GGAGAGAGACGAAGAGAGAA+GGG - chr7_2:6530810-6530829 Msa1046140:intron 50.0%
AGAGAGGAGGGAGAAAAGAG+AGG - chr7_2:6530835-6530854 Msa1046140:intron 50.0%
GAGGAGAGAGAGAAGGATGA+AGG - chr7_2:6530854-6530873 Msa1046140:intron 50.0%
GCATTCCCCCATCCAAACAA+TGG - chr7_2:6531318-6531337 Msa1046140:intron 50.0%
GGGTTTACTGGGATTGGAGT+TGG - chr7_2:6531586-6531605 Msa1046140:intron 50.0%
!! GGAGTTGGTGCTGCTTACTA+TGG - chr7_2:6531601-6531620 Msa1046140:intron 50.0%
GGAATCTGCAAGCAATGCTC+TGG - chr7_2:6531779-6531798 Msa1046140:intron 50.0%
GGCAAACCACACCATACAGT+TGG - chr7_2:6532286-6532305 Msa1046140:intron 50.0%
ACCACACCATACAGTTGGAG+GGG - chr7_2:6532291-6532310 Msa1046140:intron 50.0%
TCAAACCATAATCCGTGGGG+TGG - chr7_2:6532460-6532479 Msa1046140:intron 50.0%
TCTAATTCACCTCCACCCCA+CGG + chr7_2:6532475-6532494 None:intergenic 50.0%
TGGGGTGGAGGTGAATTAGA+AGG - chr7_2:6532475-6532494 Msa1046140:intron 50.0%
GGGGTGGAGGTGAATTAGAA+GGG - chr7_2:6532476-6532495 Msa1046140:intron 50.0%
AACCCCAACAGAAACCTGAC+GGG - chr7_2:6532512-6532531 Msa1046140:intron 50.0%
ACTGATATTGTGTCCCCGTC+AGG + chr7_2:6532529-6532548 None:intergenic 50.0%
GGTGCCAAAACTTTCAACCC+AGG + chr7_2:6533605-6533624 None:intergenic 50.0%
TCCAGTTTCTGCCTTCCCAT+CGG - chr7_2:6533860-6533879 Msa1046140:intron 50.0%
!! CCTTTGCTTTTCCGATGGGA+AGG + chr7_2:6533874-6533893 None:intergenic 50.0%
CCTTCCCATCGGAAAAGCAA+AGG - chr7_2:6533871-6533890 Msa1046140:intron 50.0%
TTGCTTGGTAGGACAGGAAG+AGG + chr7_2:6534268-6534287 None:intergenic 50.0%
GCTGAGACACTAGCAAAGGA+AGG - chr7_2:6534326-6534345 Msa1046140:intron 50.0%
! GAAGGAATCAGTGCTGAGGT+AGG - chr7_2:6534344-6534363 Msa1046140:intron 50.0%
!! TTGATGGTGGCTCGATCAAG+CGG + chr7_2:6534483-6534502 None:intergenic 50.0%
!! CCTGACAGAAGCATTGATGG+TGG + chr7_2:6534496-6534515 None:intergenic 50.0%
CCACCATCAATGCTTCTGTC+AGG - chr7_2:6534493-6534512 Msa1046140:intron 50.0%
GAAGAAGGGTTTCCTCAGCA+TGG - chr7_2:6534540-6534559 Msa1046140:intron 50.0%
ATGCCACAGATCTGTGCCTA+TGG - chr7_2:6534818-6534837 Msa1046140:intron 50.0%
GAACATCCTCCCAGATATGC+TGG + chr7_2:6535081-6535100 None:intergenic 50.0%
CTCAGAAGCAGGCTTATACC+GGG + chr7_2:6535391-6535410 None:intergenic 50.0%
! GAGAGAGAGAGAGAGCGTAG+AGG + chr7_2:6527419-6527438 None:intergenic 55.0%
AACAGAAGAAGCCCCGGCTT+CGG + chr7_2:6529490-6529509 None:intergenic 55.0%
! TGCAATGCAAGTGGCTGGCT+AGG + chr7_2:6529620-6529639 None:intergenic 55.0%
TCTCGACACTCCCATCACTG+AGG - chr7_2:6529978-6529997 Msa1046140:intron 55.0%
AAAGGAAGGACAGCGAGGGA+TGG + chr7_2:6530071-6530090 None:intergenic 55.0%
! GATGGCATGGGGTGTCATGT+TGG - chr7_2:6530242-6530261 Msa1046140:intron 55.0%
AAGAGAGGGGAGAAGAGAGG+AGG - chr7_2:6530737-6530756 Msa1046140:intron 55.0%
AGAGAGGGGAGAAGAGAGGA+GGG - chr7_2:6530738-6530757 Msa1046140:intron 55.0%
CGAAGAGAGAAGGGAGAGAG+AGG - chr7_2:6530819-6530838 Msa1046140:intron 55.0%
AGAGAGAAGGGAGAGAGAGG+AGG - chr7_2:6530822-6530841 Msa1046140:intron 55.0%
GAGAGAAGGGAGAGAGAGGA+GGG - chr7_2:6530823-6530842 Msa1046140:intron 55.0%
CAGGCTGGGTTTACTGGGAT+TGG - chr7_2:6531580-6531599 Msa1046140:intron 55.0%
CCACACCATACAGTTGGAGG+GGG - chr7_2:6532292-6532311 Msa1046140:intron 55.0%
AACCATAATCCGTGGGGTGG+AGG - chr7_2:6532463-6532482 Msa1046140:intron 55.0%
ACCCCAACAGAAACCTGACG+GGG - chr7_2:6532513-6532532 Msa1046140:intron 55.0%
TCCCCGTCAGGTTTCTGTTG+GGG + chr7_2:6532517-6532536 None:intergenic 55.0%
GTCCCCGTCAGGTTTCTGTT+GGG + chr7_2:6532518-6532537 None:intergenic 55.0%
TGTCCCCGTCAGGTTTCTGT+TGG + chr7_2:6532519-6532538 None:intergenic 55.0%
ACACCAGCAGCAGCACCATT+GGG + chr7_2:6533387-6533406 None:intergenic 55.0%
AACACCAGCAGCAGCACCAT+TGG + chr7_2:6533388-6533407 None:intergenic 55.0%
!! AATGGTGCTGCTGCTGGTGT+TGG - chr7_2:6533387-6533406 Msa1046140:intron 55.0%
TCTTGGTATGGCTCATGCCC+TGG - chr7_2:6533584-6533603 Msa1046140:intron 55.0%
CTTGGTATGGCTCATGCCCT+GGG - chr7_2:6533585-6533604 Msa1046140:intron 55.0%
TCCGATGGGAAGGCAGAAAC+TGG + chr7_2:6533864-6533883 None:intergenic 55.0%
GGCTGCTGAGACACTAGCAA+AGG - chr7_2:6534322-6534341 Msa1046140:intron 55.0%
GGGTTTCCTCAGCATGGTGT+TGG - chr7_2:6534546-6534565 Msa1046140:intron 55.0%
TGGCTATCTTGATGCACCGG+TGG - chr7_2:6534605-6534624 Msa1046140:intron 55.0%
! GGAAAGATTGGCTGTCCCAC+AGG - chr7_2:6534674-6534693 Msa1046140:intron 55.0%
CAGCCATAGGCACAGATCTG+TGG + chr7_2:6534824-6534843 None:intergenic 55.0%
CGAAGCGGTCCTCAATGCTG+AGG - chr7_2:6529092-6529111 Msa1046140:CDS 60.0%
!! GGAGTGTCGAGAACCCTCTC+AGG + chr7_2:6529970-6529989 None:intergenic 60.0%
AGAGGAGGGAGAGGAGAGAG+AGG - chr7_2:6530752-6530771 Msa1046140:intron 60.0%
GAGGAGGGAGAGGAGAGAGA+GGG - chr7_2:6530753-6530772 Msa1046140:intron 60.0%
GAGAGAGAGGGAGAGGAGAG+AGG - chr7_2:6530765-6530784 Msa1046140:intron 60.0%
CCCCCTCCAACTGTATGGTG+TGG + chr7_2:6532295-6532314 None:intergenic 60.0%
CTGTGCCCCCTCCAACTGTA+TGG + chr7_2:6532300-6532319 None:intergenic 60.0%
! CATACAGTTGGAGGGGGCAC+AGG - chr7_2:6532298-6532317 Msa1046140:intron 60.0%
! CACCTCCACCCCACGGATTA+TGG + chr7_2:6532468-6532487 None:intergenic 60.0%
TGGTGGCTCGATCAAGCGGT+CGG + chr7_2:6534479-6534498 None:intergenic 60.0%
TCAGCGCCAACACCATGCTG+AGG + chr7_2:6534555-6534574 None:intergenic 60.0%
! GCACCGGTGGAGAGAATTGC+CGG - chr7_2:6534618-6534637 Msa1046140:intron 60.0%
CACCGGTGGAGAGAATTGCC+GGG - chr7_2:6534619-6534638 Msa1046140:intron 60.0%
ACCGGTGGAGAGAATTGCCG+GGG - chr7_2:6534620-6534639 Msa1046140:intron 60.0%
AGGCATGGGAACATCAGCCC+CGG + chr7_2:6534640-6534659 None:intergenic 60.0%
GGGGAGAAGAGAGGAGGGAG+AGG - chr7_2:6530743-6530762 Msa1046140:intron 65.0%
GGGAGAGGAGAGAGAGGGAG+AGG - chr7_2:6530758-6530777 Msa1046140:intron 65.0%
!! GGACCCAATGGTGCTGCTGC+TGG - chr7_2:6533381-6533400 Msa1046140:intron 65.0%
GCCCCGGCAATTCTCTCCAC+CGG + chr7_2:6534624-6534643 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 6527249 6535517 6527249 ID=Msa1046140;Name=Msa1046140
chr7_2 mRNA 6527249 6535517 6527249 ID=Msa1046140-mRNA-1;Parent=Msa1046140;Name=Msa1046140-mRNA-1;_AED=0.08;_eAED=0.08;_QI=261|1|1|1|1|1|14|663|361
chr7_2 exon 6527249 6527980 6527249 ID=Msa1046140-mRNA-1:exon:1533;Parent=Msa1046140-mRNA-1
chr7_2 exon 6528071 6528310 6528071 ID=Msa1046140-mRNA-1:exon:1532;Parent=Msa1046140-mRNA-1
chr7_2 exon 6528405 6528443 6528405 ID=Msa1046140-mRNA-1:exon:1531;Parent=Msa1046140-mRNA-1
chr7_2 exon 6528702 6528767 6528702 ID=Msa1046140-mRNA-1:exon:1530;Parent=Msa1046140-mRNA-1
chr7_2 exon 6528874 6528946 6528874 ID=Msa1046140-mRNA-1:exon:1529;Parent=Msa1046140-mRNA-1
chr7_2 exon 6529058 6529191 6529058 ID=Msa1046140-mRNA-1:exon:1528;Parent=Msa1046140-mRNA-1
chr7_2 exon 6529341 6529466 6529341 ID=Msa1046140-mRNA-1:exon:1527;Parent=Msa1046140-mRNA-1
chr7_2 exon 6531097 6531183 6531097 ID=Msa1046140-mRNA-1:exon:1526;Parent=Msa1046140-mRNA-1
chr7_2 exon 6532767 6532829 6532767 ID=Msa1046140-mRNA-1:exon:1525;Parent=Msa1046140-mRNA-1
chr7_2 exon 6532936 6532962 6532936 ID=Msa1046140-mRNA-1:exon:1524;Parent=Msa1046140-mRNA-1
chr7_2 exon 6534684 6534764 6534684 ID=Msa1046140-mRNA-1:exon:1523;Parent=Msa1046140-mRNA-1
chr7_2 exon 6534848 6534904 6534848 ID=Msa1046140-mRNA-1:exon:1522;Parent=Msa1046140-mRNA-1
chr7_2 exon 6534995 6535038 6534995 ID=Msa1046140-mRNA-1:exon:1521;Parent=Msa1046140-mRNA-1
chr7_2 exon 6535277 6535517 6535277 ID=Msa1046140-mRNA-1:exon:1520;Parent=Msa1046140-mRNA-1
chr7_2 five_prime_UTR 6535277 6535517 6535277 ID=Msa1046140-mRNA-1:five_prime_utr;Parent=Msa1046140-mRNA-1
chr7_2 five_prime_UTR 6535019 6535038 6535019 ID=Msa1046140-mRNA-1:five_prime_utr;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6534995 6535018 6534995 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6534848 6534904 6534848 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6534684 6534764 6534684 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6532936 6532962 6532936 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6532767 6532829 6532767 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6531097 6531183 6531097 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6529341 6529466 6529341 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6529058 6529191 6529058 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6528874 6528946 6528874 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6528702 6528767 6528702 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6528405 6528443 6528405 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6528071 6528310 6528071 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 CDS 6527912 6527980 6527912 ID=Msa1046140-mRNA-1:cds;Parent=Msa1046140-mRNA-1
chr7_2 three_prime_UTR 6527249 6527911 6527249 ID=Msa1046140-mRNA-1:three_prime_utr;Parent=Msa1046140-mRNA-1
Gene Sequence

>Msa1046140

ATGTTAGGTGTTATAAGAAACAAGAATCTTCTTCGGCCTTCCTTTTCCGCATTCAGACATCTCTCTTCTTCCGCTAAACAGATGACAGTGAGAGATGCTCTTAATTCAGCTCTTGATGAAGAAATGTCCGCCGATCCTAAAGTCTTCTTGATGGGTGAAGAGGTTGGAGAATATCAAGGTGCATACAAGATTTCCAAGGGACTATTGGAGAAGTATGGTCCTGAGAGGGTTCTCGACACTCCCATCACTGAGGCTGGGTTTACTGGGATTGGAGTTGGTGCTGCTTACTATGGTCTAAAGCCTGTTGTGGAGTTTATGACATTTAACTTCTCCATGCAGGCAATAGATCACATCATTAATTCTGCTGCAAAATCAAATTACATGTCTGCTGGGCAAATAAATGTACCTATTGTATTTAGAGGACCCAATGGTGCTGCTGCTGGTGTTGGTGCTCAGCACTCTCATTGTTATGCATCTTGGTATGGCTCATGCCCTGGGTTGAAAGTTTTGGCACCATATTCATCTGAAGATGCTCGTGGTTTACTTAAAGCTGCTATAAGGGACCCTGATCCTGTAGTTTTCCTTGAAAATGAGTTACTATATGGTGAGTCATTCCCTGTTTCTGCCGAAGTTCTTGATTCCAGTTTCTGCCTTCCCATCGGAAAAGCAAAGATTGAGAGAGAAGGGAAAGATGTGACTATTACAGCCTTCTCAAAAATGGTTGGCTTTGCTCTAAAGGCTGCTGAGACACTAGCAAAGGAAGGAATCAGTGCTGAGGTTATTAATTTAAGGTCAATCCGACCGCTTGATCGAGCCACCATCAATGCTTCTGTCAGGAAAACCAACAGACTGGTGACAGTTGAAGAAGGGTTTCCTCAGCATGGTGTTGGCGCTGAAATCTGTGCATCTGTCATCGAGGAGAGTTTTGGCTATCTTGATGCACCGGTGGAGAGAATTGCCGGGGCTGATGTTCCCATGCCTTATGCAGCAAATCTGGAAAGATTGGCTGTCCCACAGATTGAAGATATTGTTCGTGCTGCAAAGAGAGCATGCCACAGATCTGTGCCTATGGCTGCAACTGCCTAA

Protein sequence

>Msa1046140

MLGVIRNKNLLRPSFSAFRHLSSSAKQMTVRDALNSALDEEMSADPKVFLMGEEVGEYQGAYKISKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLKPVVEFMTFNFSMQAIDHIINSAAKSNYMSAGQINVPIVFRGPNGAAAGVGAQHSHCYASWYGSCPGLKVLAPYSSEDARGLLKAAIRDPDPVVFLENELLYGESFPVSAEVLDSSFCLPIGKAKIEREGKDVTITAFSKMVGFALKAAETLAKEGISAEVINLRSIRPLDRATINASVRKTNRLVTVEEGFPQHGVGAEICASVIEESFGYLDAPVERIAGADVPMPYAANLERLAVPQIEDIVRAAKRACHRSVPMAATA*